..
angsd
angsd: init at 0.937
2022-03-04 09:17:35 -06:00
ants
treewide: avoid use of lib.optional with list in inputs
2021-10-04 13:02:42 -04:00
aragorn
bayescan
bcftools
bcftools: 1.14 -> 1.15
2022-02-25 11:12:05 -08:00
bedops
bedops: 2.4.39 -> 2.4.40
2021-07-23 01:02:40 +00:00
bedtools
bftools
blast
blast: 2.11.0 -> 2.12.0
2021-09-15 15:33:44 +00:00
bowtie
bowtie: 1.3.0 -> 1.3.1
2021-09-15 07:35:44 +00:00
bowtie2
bowtie2: 2.4.4 -> 2.4.5
2022-01-23 22:45:59 +00:00
bppsuite
bwa
cd-hit
perlPackages.ImageMagick: rename from perlPackages.PerlMagick
2021-08-02 20:05:00 +03:00
clustal-omega
cmtk
pkgs/applications: rename name to pname&version part 2
2021-11-07 14:53:06 +01:00
conglomerate
dcm2niix
dcm2niix: add support for configuring optional compile-time modules
2022-04-04 10:41:27 -04:00
deeptools
deeptools: 3.5.0 -> 3.5.1
2022-01-21 05:36:24 +00:00
delly
delly: 0.8.7 -> 0.9.1
2021-11-25 21:19:48 +11:00
diamond
diamond: switch to fetchFromGitHub
2021-12-23 19:11:17 +01:00
ecopcr
pkgs/applications: rename name to pname&version part 2
2021-11-07 14:53:06 +01:00
eggnog-mapper
emboss
pkgs/applications: rename name to pname&version part 2
2021-11-07 14:53:06 +01:00
est-sfs
exonerate
EZminc
fastp
fastp: 0.23.1 -> 0.23.2
2021-12-02 08:03:17 +11:00
febio-studio
febio-studio: init at 1.6.1
2022-02-21 16:43:36 +01:00
freebayes
genmap
genmap: init 1.3.0
2021-12-04 06:51:16 +11:00
hisat2
hisat2: update homepage
2022-02-06 15:10:53 +01:00
hmmer
hmmer: restrict platforms to x86_64
2021-11-20 19:17:57 +00:00
igv
inormalize
itsx
iv
pkgs/applications: rename name to pname&version part 2
2021-11-07 14:53:06 +01:00
kallisto
kallisto: 0.46.2 -> 0.48.0
2022-01-31 09:53:54 -08:00
kent
kssd
kssd: switch to fetchFromGitHub
2021-12-23 19:11:17 +01:00
last
last: 1260 -> 1268
2022-03-02 13:35:56 +11:00
MACS2
macse
treewide: convert phases that contain ":" to dont* = true ( #130500 )
2021-07-18 23:42:48 +02:00
manta
megahit
meme-suite
messer-slim
messer-slim: 3.7 -> 3.7.1
2022-02-14 00:46:29 +00:00
migrate
minc-tools
minc-widgets
minia
minimap2
minimap2: enable aarch64 builds ( #161169 )
2022-03-04 12:27:29 +01:00
mni_autoreg
mosdepth
mosdepth: 0.3.2 -> 0.3.3
2022-02-12 14:31:47 +00:00
mrbayes
mrbayes: 3.2.7 -> 3.2.7a
2021-07-27 14:30:23 +02:00
mrtrix
mrtrix: 3.0.2 -> unstable-2021-11-25
2021-11-30 21:03:53 -08:00
muscle
N3
ncbi-tools
neuron
neuron-mpi: remove appendToName to have a consistent package name for repology
2022-02-28 12:46:15 +01:00
niftyreg
niftyseg
niftyseg: switch to fetchFromGitHub
2021-12-23 19:11:17 +01:00
obitools
obitools3: removed useless python restriction
2021-11-08 07:51:48 +01:00
octopus
paml
picard-tools
picard-tools: 2.26.10 -> 2.26.11
2022-02-24 17:34:18 +00:00
platypus
plink-ng
poretools
python,pythonPackages: make aliases
2022-01-16 18:39:59 +00:00
prodigal
quast
raxml
raxml-mpi: remove appendToName to have a consistent package name for repology
2022-02-28 12:46:15 +01:00
repseek
repseek: init at 9Sep2014 ( #148017 )
2022-01-31 14:59:32 +01:00
sambamba
sambamba: 0.8.1 -> 0.8.2 ( #155972 )
2022-01-23 04:51:46 +01:00
samblaster
samtools
samtools: pull upstream fix for ncurses-6.3
2021-11-26 13:02:05 +00:00
seaview
seaview: 5.0.4 -> 5.0.5
2021-12-12 15:59:16 +00:00
snpeff
somatic-sniper
sortmerna
spades
SPAdes: 3.15.3 -> 3.15.4
2022-02-18 00:55:34 +01:00
stacks
stacks: 2.59 -> 2.60
2022-01-02 19:23:58 +01:00
star
star: 2.7.9a -> 2.7.10a
2022-01-24 19:51:44 +01:00
strelka
subread
subread: init 2.0.3
2021-12-14 13:30:23 +11:00
sumatools
svaba
tebreak
tebreak: also use python3 for tests
2022-01-16 18:00:59 +00:00
trimal
truvari
truvari: 2.0.2 -> 2.1.1 ( #126839 )
2021-06-15 22:14:20 +02:00
varscan
varscan: deprecate phases
2021-08-03 00:04:16 +02:00
vcftools
whisper
xenomapper
python3Packages.xenomapper: move to top-level
2022-01-01 02:09:11 +01:00
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