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samtools: pull upstream fix for ncurses-6.3

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Without the fix build on ncurses-6.3 fails as:

    bam_tview_curses.c:88:5: error: format not a string literal and no format arguments [-Werror=format-security]
       88 |     mvprintw(y,x,str);
          |     ^~~~~~~~
This commit is contained in:
Sergei Trofimovich 2021-11-26 12:56:51 +00:00
parent 8efe977574
commit 8147fb683c
1 changed files with 10 additions and 1 deletions
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11
pkgs/applications/science/biology/samtools/default.nix
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@ -1,4 +1,4 @@
{ lib, stdenv, fetchurl, zlib, htslib, perl, ncurses ? null }:
{ lib, stdenv, fetchurl, fetchpatch, zlib, htslib, perl, ncurses ? null }:
stdenv.mkDerivation rec {
pname = "samtools";
@ -9,6 +9,15 @@ stdenv.mkDerivation rec {
sha256 = "sha256-YWyi4FHMgAmh6cAc/Yx8r4twkW3f9m87dpFAeUZfjGA=";
};
patches = [
# Pull upstream patch for ncurses-6.3 support
(fetchpatch {
name = "ncurses-6.3.patch";
url = "https://github.com/samtools/samtools/commit/396ef20eb0854d6b223c3223b60bb7efe42301f7.patch";
sha256 = "sha256-p0l9ymXK9nqL2w8EytbW+qeaI7dD86IQgIVxacBj838=";
})
];
nativeBuildInputs = [ perl ];
buildInputs = [ zlib ncurses htslib ];