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8290 Commits

Author SHA1 Message Date
Weijia Wang
e05ddba190
Merge pull request #252357 from GaetanLepage/wolfram 
wolfram-engine: add 13.3.0
 2023-09-05 23:31:00 +02:00
Tobias Mayer
142cb83c73
hal-hardware-analyzer: mark as broken on darwin 2023-09-05 18:06:51 +02:00
Nick Cao
32c85e9b8f
Merge pull request #253413 from r-ryantm/auto-update/cytoscape 
cytoscape: 3.10.0 -> 3.10.1
 2023-09-05 08:17:18 -04:00
R. Ryantm
7310af91d4 cytoscape: 3.10.0 -> 3.10.1 2023-09-05 11:47:11 +00:00
Weijia Wang
4b16df4b63
Merge pull request #253204 from r-ryantm/auto-update/gama 
gama: 2.24 -> 2.25
 2023-09-05 12:06:00 +02:00
R. Ryantm
086fe9c93c kissat: 3.0.0 -> 3.1.0 2023-09-05 05:29:29 +00:00
Tobias Mayer
90ea2f63fe
openroad: unstable-2023-03-31 -> unstable-2023-08-26 2023-09-04 21:01:51 +02:00
Dmitry Kalinkin
3c15feef77
root: 6.26.10 -> 6.28.06 (#215187) 2023-09-04 12:24:30 -04:00
Henner Zeller
7d1ddd1dfb surelog: 1.57 -> 1.73 
Also, use the finalAttrs pattern for easier overrides.
Explicitly mention that we don't fetch submodules to emphasize that
all vendored dependencies are replaced with nix dependencies.
 2023-09-04 09:03:32 -05:00
Henner Zeller
ad71d3105c uhdm: 1.57 -> 1.73 
Also, use the finalAttrs pattern for easier overrides.
Explicitly mention that we don't fetch submodules to emphasize that
all vendored dependencies are replaced with nix dependencies.
 2023-09-04 09:03:32 -05:00
ajs124
7f728d409f flatcam: fix after daf490f1f9 2023-09-04 13:55:31 +02:00
ajs124
3d1d7419d4 qucs: remove 2023-09-04 13:55:29 +02:00
ajs124
f72bd5065d qfsm: remove 
there seems to be an active fork. see https://github.com/AaronErhardt/qfsm/issues/1
for their progress on qt5 support
 2023-09-04 13:55:28 +02:00
ajs124
f1ca7eecbb avogadro: remove 2023-09-04 13:55:28 +02:00
ajs124
fd9213cf75 aliza: remove 2023-09-04 13:55:28 +02:00
ajs124
85d2adb0cd flatcam: 8.5 -> unstable-2022-02-02 
qt4 -> qt5
 2023-09-04 13:54:49 +02:00
ajs124
de1d98cabe vite: 1.2pre1543 -> unstable-2022-05-17 2023-09-04 13:54:49 +02:00
Vincent Laporte
02643fe422 coq_8_18: init at 8.18+rc1 2023-09-04 10:02:59 +02:00
Vincent Laporte
62441cb5da cvc5: 1.0.6 → 1.0.7 2023-09-04 08:32:07 +02:00
R. Ryantm
d0d2a84f6a gama: 2.24 -> 2.25 2023-09-04 00:12:07 +00:00
Erik Nolf
1375f052e4 xmedcon: update project homepage 2023-09-03 22:49:42 +03:00
Erik Nolf
511eecaa07 xmedcon: add wrapGAppsHook 
This prevents some crashes on non-GNOME systems.
 2023-09-03 22:48:41 +03:00
Evils
01a94e55a2 kicad: clean up meta and comments 2023-09-03 19:34:30 +02:00
Evils
378f10ad81 kicad: remove kiwi maintainer 
they're no longer active
 2023-09-03 19:34:30 +02:00
Evils
29bf6c5ca5 kicad.libraries.packages3d: use stepreduce & stepZ 
this makes it buildable by hydra

stepreduce brings down closure size from 5.4G to 3.3G
zip brings it down from 3.3G to 1.6G (or 5.4G to 1.9G without reduce)

xz compressed NAR sizes are:
plain: 373M
gzip: 712M
zip: 712M
stepreduce: 262M
stepreduce & gzip: 465M
stepreduce & zip: 468M
 2023-09-03 19:34:30 +02:00
Mauricio Collares
5e9ff98d1d
Merge pull request #252962 from collares/sage-trac-to-gh 
treewide: fetch sage patches from github instead of now-defunct trac
 2023-09-02 23:47:06 -07:00
Pol Dellaiera
cb8d5ad83e
Merge pull request #252932 from r-ryantm/auto-update/ants 
ants: 2.4.4 -> 2.5.0
 2023-09-03 08:30:51 +02:00
Pol Dellaiera
539ceb8267
Merge pull request #252643 from r-ryantm/auto-update/gretl 
gretl: 2023a -> 2023b
 2023-09-02 23:45:31 +02:00
Pol Dellaiera
55b00aa1f7
ants: update postInstall attribute 2023-09-02 23:09:28 +02:00
Pol Dellaiera
ad1e8a5b43
ants: update meta attributes 2023-09-02 23:08:44 +02:00
Pol Dellaiera
ed6e675844
gretl: fix compilation on aarch64-darwin 2023-09-02 22:51:40 +02:00
Pol Dellaiera
d04a1a598e
ants: use finalAttrs pattern 2023-09-02 22:18:19 +02:00
Pol Dellaiera
35145f9df0
ants: reformat file using nixpkgs-fmt 2023-09-02 22:17:19 +02:00
Pol Dellaiera
0346e4c01d
gretl: use finalAttrs pattern 2023-09-02 21:56:53 +02:00
Pol Dellaiera
b8dcdcc45a
gretl: reformat files using nixpkgs-fmt 2023-09-02 21:56:06 +02:00
Mauricio Collares
2701d140df treewide: fetch sage patches from github instead of now-defunct trac 2023-09-02 08:46:11 -07:00
R. Ryantm
875e737bfa ants: 2.4.4 -> 2.5.0 2023-09-02 11:57:30 +00:00
figsoda
e90c4d8d01 egglog: unstable-2023-08-23 -> unstable-2023-08-29 
Diff: 9e53038196...c83fc75087
 2023-09-01 16:33:25 -04:00
Weijia Wang
2a01448de1
Merge pull request #248805 from r-ryantm/auto-update/openmvs 
openmvs: 2.1.0 -> 2.2.0
 2023-09-01 13:52:30 +02:00
Justin Bedő
f25f30b17a
Merge pull request #251304 from r-ryantm/auto-update/sambamba 
sambamba: 1.0.0 -> 1.0.1
 2023-09-01 15:30:29 +10:00
R. Ryantm
3aa19ca341 gretl: 2023a -> 2023b 2023-08-31 21:56:09 +00:00
Austin Seipp
118a61fadd tamarin-prover: 1.6.1 -> 1.8.0 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2023-08-31 10:57:38 -05:00
Weijia Wang
c869bec978
Merge pull request #250861 from kashw2/qucs-s 
qucs-s: 1.1.0 -> 2.0.0
 2023-08-31 11:23:40 +02:00
Mauricio Collares
65fc9ca744
Merge pull request #252485 from r-ryantm/auto-update/jmol 
jmol: 16.1.33 -> 16.1.35
 2023-08-31 00:42:04 -07:00
R. Ryantm
0ced6748c9 jmol: 16.1.33 -> 16.1.35 2023-08-31 02:32:25 +00:00
Michael Raskin
5ab5c5d6c7 golly: 4.1 -> 4.2 2023-08-31 00:45:02 +02:00
Gaetan Lepage
7209bb1058 wolfram-engine: add 13.3.0 2023-08-30 16:10:47 +02:00
Tobias Mayer
1b6d208654
hal-hardware-analyzer: fix build with fmt 10.1.0 2023-08-30 14:54:42 +02:00
Weijia Wang
94d396e4ac
Merge pull request #252223 from wegank/nvc-bump 
nvc: 1.10.1 -> 1.10.2
 2023-08-30 11:21:09 +02:00
Weijia Wang
e55291a495 nvc: 1.10.1 -> 1.10.2 2023-08-30 00:23:24 +02:00
Weijia Wang
35055b7107
Merge pull request #251907 from r-ryantm/auto-update/kstars 
kstars: 3.6.4 -> 3.6.6
 2023-08-29 23:00:59 +02:00
Robert Scott
a6f8a0796f
Merge pull request #251048 from risicle/ris-hal-hardware-analyzer-4.2.0 
hal-hardware-analyzer: 3.3.0 -> 4.2.0
 2023-08-29 21:46:45 +01:00
R. Ryantm
6a6f2b535c workcraft: 3.4.0 -> 3.4.1 2023-08-29 19:57:19 +00:00
R. Ryantm
116480d33f kstars: 3.6.4 -> 3.6.6 2023-08-28 05:48:08 +00:00
OTABI Tomoya
00a6142d86
Merge pull request #251193 from lopsided98/pymavlink-update 
mavproxy, python3Packages.pymavlink: update
 2023-08-28 14:29:03 +09:00
Doron Behar
d189406ad2 hal-hardware-analyzer: 3.3.0 -> 4.2.0 
Diff: https://github.com/emsec/hal/compare/v3.3.0...v4.2.0
 2023-08-27 16:25:38 +01:00
Theodore Ni
c173b99c6c
Merge branch 'master' into staging-next 
Resolve correctly the three-way merge between https://github.com/NixOS/nixpkgs/pull/251681,
https://github.com/NixOS/nixpkgs/pull/227900, and https://github.com/NixOS/nixpkgs/pull/246022
 2023-08-26 19:00:58 -07:00
Nick Cao
cf2004afe4
Merge pull request #249053 from r-ryantm/auto-update/dataexplorer 
dataexplorer: 3.7.9 -> 3.8.0
 2023-08-27 09:19:47 +08:00
github-actions[bot]
3503eea847
Merge master into staging-next 2023-08-26 18:00:55 +00:00
figsoda
b424933ae6 egglog: unstable-2023-08-19 -> unstable-2023-08-23 
Diff: a4768b1751...9e53038196
 2023-08-26 12:00:55 -04:00
github-actions[bot]
4cdbb53d13
Merge master into staging-next 2023-08-26 12:01:05 +00:00
markuskowa
212d454c2a
Merge pull request #246867 from markuskowa/add-mpi-hook 
add mpiCheckPhaseHook
 2023-08-26 11:54:56 +02:00
github-actions[bot]
e79f8fd118
Merge master into staging-next 2023-08-25 18:00:58 +00:00
Matthias Beyer
103bbccbf6
Merge pull request #251359 from r-ryantm/auto-update/iqtree 
iqtree: 2.2.2.6 -> 2.2.2.7
 2023-08-25 17:53:42 +02:00
R. Ryantm
e1b695a96f iqtree: 2.2.2.6 -> 2.2.2.7 2023-08-25 12:25:13 +00:00
github-actions[bot]
8680fe99a1
Merge master into staging-next 2023-08-25 12:01:24 +00:00
Doron Behar
582c821533
Merge pull request #251215 from alyaeanyx/qalculate-4.8.0 
{libqalculate, qalculate-gtk, qalculate-qt}: 4.7.0 -> 4.8.0
 2023-08-25 11:11:37 +00:00
R. Ryantm
d564dfa4d0 sambamba: 1.0.0 -> 1.0.1 2023-08-25 06:20:00 +00:00
github-actions[bot]
a11e7e3428
Merge master into staging-next 2023-08-25 06:00:56 +00:00
Samuel Ainsworth
c41b4c955e
Merge pull request #250779 from GaetanLepage/mujoco-update 
mujoco: 2.3.0 -> 2.3.7
 2023-08-24 20:20:35 -04:00
github-actions[bot]
d4c8d05cac
Merge master into staging-next 2023-08-25 00:01:49 +00:00
alyaeanyx
3d99e9b980 {libqalculate, qalculate-gtk, qalculate-qt}: 4.7.0 -> 4.8.0 2023-08-24 22:15:44 +02:00
Matthias Beyer
8573330e41
Merge pull request #251197 from r-ryantm/auto-update/cryptominisat 
cryptominisat: 5.11.11 -> 5.11.12
 2023-08-24 20:08:46 +02:00
github-actions[bot]
abaaf09a76
Merge master into staging-next 2023-08-24 18:00:52 +00:00
R. Ryantm
fcf9eb1b51 cryptominisat: 5.11.11 -> 5.11.12 2023-08-24 17:19:43 +00:00
R. Ryantm
df4f0605ce gerbv: 2.9.8 -> 2.10.0 2023-08-24 17:00:06 +00:00
Ben Wolsieffer
a2a7149af1 mavproxy: 1.8.62 -> 1.8.66 2023-08-24 12:28:51 -04:00
github-actions[bot]
4328391132
Merge master into staging-next 2023-08-24 12:01:05 +00:00
Theodore Ni
093f591dbc
Merge pull request #249849 from tjni/flatcam 
flatcam: do not pin setuptools in shapely
 2023-08-23 23:19:06 -07:00
github-actions[bot]
a451dcf514
Merge master into staging-next 2023-08-24 06:01:14 +00:00
Nick Cao
c5008e9a86
geogebra6: fix web archive url and darwin hash 2023-08-24 09:37:22 +08:00
Theodore Ni
003cfb2dc7
flatcam: do not pin setuptools in shapely 2023-08-23 17:46:21 -07:00
OTABI Tomoya
21943b1829
Merge pull request #248172 from alxsimon/bwa 
bwa-mem2: init at version 2.2.1
 2023-08-24 09:28:34 +09:00
Alexis Simon
556dac0725 bwa-mem2: init at version 2.2.1 
Co-authored-by: OTABI Tomoya <tomoya.otabi@gmail.com>
 2023-08-23 15:02:06 -07:00
github-actions[bot]
3e9e11f99a
Merge master into staging-next 2023-08-23 18:01:00 +00:00
markuskowa
3df4255e9e
Merge pull request #250973 from markuskowa/upd-ergoscf 
ergoscf: 3.8 -> 3.8.2
 2023-08-23 16:43:04 +02:00
Markus Kowalewski
dc963f7f2e ergoscf: 3.8 -> 3.8.2 2023-08-23 15:05:58 +02:00
github-actions[bot]
11e56ed9bb
Merge master into staging-next 2023-08-23 12:01:03 +00:00
Mauricio Collares
0ce130a11b
Merge pull request #250947 from collares/sage-gmp 
sage: import test fixes for gmp update
 2023-08-23 13:13:44 +02:00
Mauricio Collares
71e74a395b sage: import test fixes for gmp update 2023-08-23 12:09:01 +02:00
Nick Cao
201bbdbe7a
Merge pull request #250869 from r-ryantm/auto-update/cbmc 
cbmc: 5.89.0 -> 5.90.0
 2023-08-23 17:15:24 +08:00
natsukium
ae0bfcb156
viennarna: rename from ViennaRNA 2023-08-23 16:54:10 +09:00
Matthias Beyer
2f2a1073a7
Merge pull request #250742 from smaret/update/gildas 
gildas: 20230201_a -> 20230801_a
 2023-08-23 08:49:14 +02:00
Gaetan Lepage
ed86f377f2 mujoco: 2.3.0 -> 2.3.7 2023-08-23 07:40:17 +02:00
R. Ryantm
58a4a997db cbmc: 5.89.0 -> 5.90.0 2023-08-23 00:42:48 +00:00
kashw2
55774d1ef6 qucs-s: 1.1.0 -> 2.0.0 2023-08-23 10:20:54 +10:00
Markus Kowalewski
1534b6768e nwchem: use mpiCheckPhaseHook 2023-08-22 23:27:47 +02:00
Markus Kowalewski
b44960c4d9 cp2k: use mpiCheckPhaseHook 2023-08-22 23:27:47 +02:00
github-actions[bot]
1f6fb14d17
Merge staging-next into staging 2023-08-22 00:02:25 +00:00
Šimon Brandner
4920a168dc
geogebra6: 6-0-785-0 -> 6-0-794-0 
Signed-off-by: Šimon Brandner <simon.bra.ag@gmail.com>
 2023-08-21 21:27:51 +02:00
Sébastien Maret
a159d678ba gildas: 20230201_a -> 20230801_a 
- Update to the latest upstream version

 - Install only user binaries in bin/
 2023-08-21 16:51:40 +02:00
github-actions[bot]
56f5b9fafc
Merge staging-next into staging 2023-08-21 12:01:35 +00:00
OTABI Tomoya
325b09c1b5
Merge pull request #249878 from jbedo/last 
last: 1460 -> 1471
 2023-08-21 16:09:10 +09:00
Emery Hemingway
ed353dc721 mosdepth: build with Nim-2 2023-08-21 07:32:46 +01:00
Emery Hemingway
9025a583b1 nimPackages.hts: 0.3.4 -> 0.3.23, rename from hts-nim 2023-08-21 07:32:46 +01:00
github-actions[bot]
6eac46a06d
Merge staging-next into staging 2023-08-21 06:01:22 +00:00
figsoda
9fece688bc egglog: unstable-2023-08-09 -> unstable-2023-08-19 
Diff: de31786679...a4768b1751
 2023-08-20 15:59:22 -04:00
github-actions[bot]
435d3aef59
Merge staging-next into staging 2023-08-20 12:01:50 +00:00
Artturi
52d8a64da6
Merge pull request #249212 from Artturin/makewrapperevaler 2023-08-20 13:25:00 +03:00
Evils
37b8244412 kicad-unstable: 2023-06-24 -> 2023-08-15 2023-08-20 10:42:06 +02:00
Sergei Trofimovich
f434e83d62 angsd: pull patch pending upstream inclusion for parallel build fix 
Without the change rapallel builds fail occasionally as:

    $ make --shuffle -j
    ...
    g++ -c   -O3 -D__STDC_FORMAT_MACROS   argStruct.cpp
    g++ -c   -O3 -D__STDC_FORMAT_MACROS   ancestral_likes.cpp
    gcc -c   -O3 -D__STDC_FORMAT_MACROS   fet.c
    g++ -c   -O3 -D__STDC_FORMAT_MACROS   abcGL.cpp
    g++ -c   -O3 -D__STDC_FORMAT_MACROS   pop1_read.cpp
    g++ -c   -O3 -D__STDC_FORMAT_MACROS   angsd.cpp
    g++ -c   -O3 -D__STDC_FORMAT_MACROS   abcHWE_F.cpp
    gcc -c   -O3 -D__STDC_FORMAT_MACROS   kprobaln.c
    g++ -c   -O3 -D__STDC_FORMAT_MACROS   mpileup.cpp
    argStruct.cpp:3:10: fatal error: version.h: No such file or directory
        3 | #include "version.h"
          |          ^~~~~~~~~~~
    compilation terminated.
    angsd.cpp:11:10: fatal error: version.h: No such file or directory
       11 | #include "version.h"
          |          ^~~~~~~~~~~
 2023-08-20 08:50:53 +01:00
github-actions[bot]
8a62479e06
Merge staging-next into staging 2023-08-20 00:03:24 +00:00
Pol Dellaiera
aea9afbc0f
Merge pull request #249221 from r-ryantm/auto-update/calc 
calc: 2.14.1.6 -> 2.14.3.5
 2023-08-20 00:37:26 +02:00
github-actions[bot]
9145b3fd81
Merge staging-next into staging 2023-08-19 18:01:22 +00:00
OTABI Tomoya
b107015d47
Merge pull request #249755 from natsukium/bamtools/init 
bamtools: init at 2.5.2
 2023-08-19 21:14:25 +09:00
R. Ryantm
85632d125b calc: 2.14.1.6 -> 2.14.3.5 2023-08-19 03:45:31 +00:00
github-actions[bot]
313f7c5380
Merge staging-next into staging 2023-08-19 00:02:13 +00:00
Theodore Ni
ece0953571
Merge branch 'staging-next' into staging 2023-08-18 16:02:27 -07:00
Jack Leightcap
03f6f069b3 gtkwave: 3.3.115 -> 3.3.117 
Signed-off-by: Jack Leightcap <jack@leightcap.com>
 2023-08-18 23:21:16 +02:00
Jack Leightcap
bcedfe83e7 gtkwave: add maintainer jleightcap 
Signed-off-by: Jack Leightcap <jack@leightcap.com>
 2023-08-18 23:21:16 +02:00
Justin Bedo
8d9f56ac2d
last: 1460 -> 1471 
Diff: https://gitlab.com/mcfrith/last/-/compare/refs/tags/1460...1471
 2023-08-18 14:11:53 +10:00
natsukium
5462f67cc8
bamtools: init at 2.5.2 2023-08-18 00:17:15 +09:00
Vincent Laporte
ae68d70536
cvc5: 1.0.5 → 1.0.6 2023-08-16 21:33:07 +02:00
Jan Tojnar
86797b2008 Merge branch 'staging-next' into staging 
Conflicts:
- pkgs/development/libraries/qt-6/default.nix
  Merge a5b92645f1 and 0597d865ef
 2023-08-16 19:37:11 +02:00
Luflosi
dc24d56846
boinc: 7.22.2 -> 7.24.1 
https://github.com/BOINC/boinc/releases/tag/client_release%2F7.24%2F7.24.0
https://github.com/BOINC/boinc/releases/tag/client_release%2F7.24%2F7.24.1
 2023-08-16 18:35:16 +02:00
K900
408482c158
Merge pull request #249330 from evils/kicad 
kicad: 7.0.6 -> 7.0.7
 2023-08-16 15:34:21 +03:00
K900
6edd6f71c7 treewide: clean up all qttranslations workarounds 
There are two kinds of changes here:
- removing explicit qttranslations path hardcoding from applications that were patched to do it
- replacing qttranslations in buildInputs with qttools for packages that really depend on the latter

After this, qttranslation is never used outside Qt itself, as it should.
 2023-08-15 22:11:39 +03:00
R. Ryantm
fa5cfd04d0 openhantek6022: 3.3.2.2 -> 3.3.3 2023-08-15 17:09:05 +00:00
Evils
fb95457e7a kicad: 7.0.6 -> 7.0.7 2023-08-15 11:53:59 +02:00
Pol Dellaiera
3eb7f7a63b
Merge pull request #248683 from oxij/tree/source-root-continues-3 
treewide: cleanup `sourceRoot` and `setSourceRoot` usage
 2023-08-15 05:53:52 +02:00
Artturin
9594f53b99 sage.with-env: remove unnecessary makeWrapper 
Builds without it, all it seems to be doing is adding `/nix/store/6xfmwacsa9a7mzjjarknf9zg28q67ghq-sage-with-env-10.0/var/lib/sage/installed/make_shell_wrapper-hook`
 2023-08-14 23:13:27 +03:00
Lassulus
43fd3a94bb
Merge pull request #245215 from idlip/pspp-bump 
pspp: 1.4.1 -> 1.6.2
 2023-08-14 20:34:03 +02:00
7c6f434c
6221aed0d1
Merge pull request #247359 from xworld21/R-sweave-tex 
R: split tex output for use with texlive.combine
 2023-08-14 16:50:01 +00:00
Pascal Bach
1f546bd2bc
Merge pull request #247575 from lorenz/dsview-1-3-0 
dsview: 1.2.2 -> 1.3.0
 2023-08-14 13:31:47 +02:00
Mauricio Collares
32c7b9a220
Merge pull request #249003 from r-ryantm/auto-update/jmol 
jmol: 16.1.13 -> 16.1.33
 2023-08-14 11:11:21 +02:00
R. Ryantm
8894e03cbb dataexplorer: 3.7.9 -> 3.8.0 2023-08-14 07:01:44 +00:00
Artturi
aab90d8714
Merge pull request #248817 from Artturin/reffixes1 2023-08-14 09:13:40 +03:00
Nick Cao
8500983a14
Merge pull request #248856 from NickCao/eigenmath 
eigenmath: unstable-2023-06-16 -> unstable-2023-08-03
 2023-08-13 22:35:58 -06:00
R. Ryantm
b3e6bcb605 jmol: 16.1.13 -> 16.1.33 2023-08-14 00:00:24 +00:00
Weijia Wang
f6538bb83a eigenmath: set platforms 2023-08-13 17:31:58 +02:00
Weijia Wang
5075896acb
Merge pull request #247626 from r-ryantm/auto-update/fast-downward 
fast-downward: 22.12.0 -> 23.06.0
 2023-08-13 13:49:08 +02:00
Nick Cao
b09606fc0a
eigenmath: unstable-2023-06-16 -> unstable-2023-08-03 
Diff: 800adc5c0b...f202cf0c34
 2023-08-13 15:50:40 +08:00
Artturin
25eef24033 treewide: Don't hardcode nix store in patchelf calls 2023-08-13 05:44:01 +03:00
R. Ryantm
ee363c9ad3 openmvs: 2.1.0 -> 2.2.0 2023-08-13 01:21:41 +00:00
Jan Malakhovski
d098c821d6 treewide: remove unneeded dots and slashes in sourceRoots 2023-08-12 08:29:56 +00:00
Theodore Ni
851d2f6b95
macs2: 2.2.8 -> 2.2.9.1 2023-08-11 14:45:45 -07:00
Jan Malakhovski
591ccfe5b9 treewide: noop: refer to src.name or similar where appropriate, part 3: more use cases 
This continues where d8f7f6a5ce left off. Similarly
to that commit, this commit this also points `sourceRoot`s to `src.name` and similar
instead of keeping hardcoded names, and edits other derivation attrs do do the same,
where appropriate.

Also, similarly to d8f7f6a5ce some of expressions this
edits use `srcs` attribute with customly-named sources, so they have to be moved
into `let` blocks to keep evaluation efficient (the other, worse, way to do this
would to recurcively refer to `elemAt n finalAttrs.srcs` or, similarly, with `rec`).
 2023-08-11 09:20:44 +00:00
Nick Cao
39f729e827
Merge pull request #248258 from r-ryantm/auto-update/cbmc 
cbmc: 5.88.1 -> 5.89.0
 2023-08-10 19:30:18 -06:00
Nick Cao
f6f59fdce7
Merge pull request #248280 from r-ryantm/auto-update/seqkit 
seqkit: 2.5.0 -> 2.5.1
 2023-08-09 23:23:15 -06:00
R. Ryantm
6d530a6389 seqkit: 2.5.0 -> 2.5.1 2023-08-10 04:42:38 +00:00
R. Ryantm
7dbd412737 cbmc: 5.88.1 -> 5.89.0 2023-08-10 02:27:01 +00:00
figsoda
a69648b581 egglog: unstable-2023-07-19 -> unstable-2023-08-09 
Diff: 9fe03ad35a...de31786679
 2023-08-09 16:46:12 -04:00
figsoda
fba2eab4c0 reason-shell: init at 0.3.10 
https://github.com/jaywonchung/reason
 2023-08-08 14:51:53 +00:00
Janik
777fcd15e2
Merge pull request #245677 from fsagbuya/linux-gpib 2023-08-08 14:52:14 +02:00
Vincenzo Mantova
fb4da9bcad R: split tex output for use with texlive.combine 2023-08-08 11:37:56 +01:00
github-actions[bot]
dd48ee46cf
Merge master into staging-next 2023-08-07 12:00:52 +00:00
Weijia Wang
c34272e65c
Merge pull request #247623 from r-ryantm/auto-update/samtools 
samtools: 1.17 -> 1.18
 2023-08-07 13:50:07 +02:00
Vladimír Čunát
a93afc73ef
polymake: pin back to perl 5.36 
https://hydra.nixos.org/build/230316833/nixlog/2/tail
 2023-08-07 08:52:10 +02:00
R. Ryantm
06fadebc20 libpoly: 0.1.11 -> 0.1.13 2023-08-07 04:40:37 +00:00
R. Ryantm
2f9afe24c3 fast-downward: 22.12.0 -> 23.06.0 2023-08-07 01:43:33 +00:00
R. Ryantm
a303664816 samtools: 1.17 -> 1.18 2023-08-07 01:22:06 +00:00
Lorenz Brun
c317e99ee7 dsview: 1.2.2 -> 1.3.0 
The new version is also Qt 6 compatible, so use this opportunity to
switch to Qt 6.
 2023-08-06 22:29:50 +02:00
github-actions[bot]
191e60634e
Merge master into staging-next 2023-08-06 18:01:04 +00:00
Mario Rodas
156a49aa49
Merge pull request #236810 from natsukium/cmtk/update 
cmtk: 3.3.1 -> 3.3.2; fix darwin build
 2023-08-06 11:51:18 -05:00
natsukium
edc5d13ef3
streamlit: manage as python-modules 2023-08-06 22:55:01 +09:00
github-actions[bot]
6458cb74a2
Merge master into staging-next 2023-08-05 12:01:30 +00:00
Mauricio Collares
91c8b652db
Merge pull request #246980 from collares/sage-next-20230728 
[staging-next] sage: numpy/scipy upgrade patches
 2023-08-05 10:14:27 +02:00
Doron Behar
82326d676d
Merge pull request #247122 from doronbehar/pkg/lammps 
lammps: 23Jun2022_update4 -> 2Aug2023
 2023-08-05 08:00:23 +00:00
Nick Cao
bbe9ae26ec
Merge pull request #247159 from panicgh/dataexplorer 
dataexplorer: 3.7.8 -> 3.7.9
 2023-08-05 00:27:43 -06:00
Andrey Alekseenko
2f707365e2 gromacs: update meta 
- license is now lgpl21Plus
- accurate longDescription
 2023-08-05 00:44:04 +00:00
Weijia Wang
70f066f77f
Merge pull request #247155 from wegank/beluga-hash 
beluga: fix hash
 2023-08-04 22:10:47 +02:00
Weijia Wang
5c9ba9e55c
Merge pull request #246863 from r-ryantm/auto-update/picard-tools 
picard-tools: 3.0.0 -> 3.1.0
 2023-08-04 21:17:27 +02:00
Weijia Wang
ac82995363
Merge pull request #247137 from wegank/guile-platforms-3 
treewide: reduce guile_2_0 usage
 2023-08-04 20:36:06 +02:00
Weijia Wang
d4e52e4564 beluga: fix hash 2023-08-04 19:48:22 +02:00
Weijia Wang
c39c0479dd geda: 1.8.2-20130925 -> 1.10.2 2023-08-04 19:10:54 +02:00
Vincent Laporte
14651559b5 hol_light: 2019-10-06 → 2023-07-21 2023-08-04 18:15:31 +02:00
Doron Behar
4939850514 lammps: 23Jun2022_update4 -> 2Aug2023 2023-08-04 17:48:40 +03:00
Nicolas Benes
afd76e93e3 dataexplorer: 3.7.8 -> 3.7.9 2023-08-04 14:19:25 +02:00
markuskowa
394beeefa6
Merge pull request #246983 from sheepforce/molcas-qcmaquis 
openmolcas: enable dmrg and nevpt2 support
 2023-08-04 10:55:44 +02:00
Jan Malakhovski
5852f26bdc treewide: noop: refer to src.name or similar in sourceRoot where appropriate, part 1: trivial cases 2023-08-03 16:32:03 +00:00
Weijia Wang
029622d055
Merge pull request #246876 from wegank/jogl-platforms 
gephi, processing: support more platforms
 2023-08-03 17:47:40 +02:00
Phillip Seeber
eacf49d19e openmolcas: enable dmrg and nevpt2 support 2023-08-03 17:34:32 +02:00
Mauricio Collares
c0f4dc2f59
Merge pull request #246573 from CRTified/sage-overrideScope 
sage: use overrideScope instead of packageOverrides
 2023-08-03 17:02:44 +02:00
Weijia Wang
c9b8162d3d gephi: unrestrict platforms 2023-08-03 15:33:20 +02:00
Florian Agbuya
1d41078177 linux-gpib: init at 4.3.6 2023-08-03 21:19:45 +08:00
R. Ryantm
29a0a9e29a picard-tools: 3.0.0 -> 3.1.0 2023-08-02 22:03:03 +00:00
Weijia Wang
4ae82b0bbe
Merge pull request #246823 from bcdarwin/update-beluga 
beluga: 1.0 -> 1.1
 2023-08-02 23:19:07 +02:00
Weijia Wang
66aedfd010
Merge pull request #246815 from r-ryantm/auto-update/veryfasttree 
veryfasttree: 4.0.1 -> 4.0.2
 2023-08-02 21:56:37 +02:00
Weijia Wang
e4e313aeff
Merge pull request #246485 from r-ryantm/auto-update/bcftools 
bcftools: 1.17 -> 1.18
 2023-08-02 19:51:47 +02:00
Ben Darwin
93a35301f1 beluga: 1.0 -> 1.1 2023-08-02 13:20:41 -04:00
Pol Dellaiera
9a772d7658
veryfasttree: use finalAttrs pattern 2023-08-02 18:51:11 +02:00
R. Ryantm
1fd16883d4 veryfasttree: 4.0.1 -> 4.0.2 2023-08-02 16:13:45 +00:00
Mauricio Collares
c25f522dda sage: import upstream numpy/scipy upgrade patches 2023-08-02 11:41:20 +02:00
Weijia Wang
b5416bf837
Merge pull request #246593 from jiegec/auto-update/cbmc 
cbmc: 5.87.0 -> 5.88.1
 2023-08-01 23:00:00 +02:00
Weijia Wang
23332e13fe
Merge pull request #243407 from natsukium/paml/update 
paml: 4.9j -> 4.10.7
 2023-08-01 22:09:44 +02:00
Jiajie Chen
b96dbd032c cbmc: 5.87.0 -> 5.88.1 2023-08-01 23:52:10 +08:00
Doron Behar
43ce484589
Merge pull request #245375 from doronbehar/pkg/lammps 
lammps: numerous improvements
 2023-08-01 14:44:57 +00:00
markuskowa
b89bbeaac5
Merge pull request #246331 from sheepforce/cp2k 
cp2k: 2023.1 -> 2023.2
 2023-08-01 15:52:32 +02:00
Carl Richard Theodor Schneider
27657a22ba sage: use overrideScope instead of packageOverrides 2023-08-01 15:04:21 +02:00
sheepforce
ab6fef15e0 stellarium: add patch for indi 2.0 compatibility 2023-08-01 11:12:10 +00:00