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8290 Commits

Author SHA1 Message Date
Mauricio Collares
d4aaa0447a
Merge pull request #258501 from r-ryantm/auto-update/jmol 
jmol: 16.1.39 -> 16.1.41
 2023-10-02 09:20:43 +02:00
Fabián Heredia Montiel
72b10ff62f
Merge pull request #258278 from markuskowa/split-libxsmm 
libxsmm: split outputs -> out, dev, doc
 2023-10-01 22:53:43 -06:00
R. Ryantm
51ef74c648 jmol: 16.1.39 -> 16.1.41 2023-10-02 00:01:49 +00:00
Weijia Wang
0396d3b0fb
Merge pull request #258254 from r-ryantm/auto-update/nest-mpi 
nest-mpi: 3.5 -> 3.6
 2023-10-01 03:53:05 +02:00
Weijia Wang
d2f79d7443
Merge pull request #257369 from r-ryantm/auto-update/stacks 
stacks: 2.62 -> 2.65
 2023-10-01 03:20:19 +02:00
Weijia Wang
293062bbdb stacks: set platforms 2023-10-01 02:26:34 +02:00
Weijia Wang
00d57438ab
Merge pull request #256805 from r-ryantm/auto-update/neuron-mpi 
neuron-mpi: 8.2.2 -> 8.2.3
 2023-10-01 00:44:58 +02:00
Weijia Wang
0b2e425b68
Merge pull request #256750 from r-ryantm/auto-update/ginac 
ginac: 1.8.6 -> 1.8.7
 2023-10-01 00:40:22 +02:00
Weijia Wang
991ea4b415
Merge pull request #258269 from wegank/siril-bump 
siril: 1.0.6 -> 1.2.0
 2023-10-01 00:16:35 +02:00
Markus Kowalewski
dad3ce4398 cp2k: fix libxsmm includes (use getDev) 2023-09-30 23:28:31 +02:00
Weijia Wang
032719d0c5 siril: 1.0.6 -> 1.2.0 2023-09-30 23:18:47 +02:00
R. Ryantm
a78f4ed541 nest-mpi: 3.5 -> 3.6 2023-09-30 18:54:13 +00:00
Markus Kowalewski
f1b44ffc1c nwchem: remove test jobs from output 
The tests are not needed to run the program.
Removing the tests saves about 220 MB.
 2023-09-30 16:15:37 +02:00
Markus Kowalewski
c883a53089 c2pk: remove unit tests from output 
reduces output size from 1.3GB to 960 MB
 2023-09-30 15:03:12 +02:00
Arnout Engelen
2add93ab93
Merge pull request #257795 from natsukium/dssp/update 
dssp: 4.4.2 -> 4.4.3
 2023-09-29 14:50:46 +02:00
Vincent Laporte
368f95104b easycrypt: 2022.04 → 2023.09 2023-09-29 10:33:21 +02:00
Vincent Laporte
82aaf63703 alt-ergo: 2.4.3 → 2.5.1 
ocamlPackages.ocplib-simplex: 0.4 → 0.5
 2023-09-29 06:43:44 +02:00
Peder Bergebakken Sundt
470614b671 treewide: Fix typos 2023-09-28 19:06:13 +02:00
markuskowa
7e0e86fe35
Merge pull request #257718 from markuskowa/upd-mopac 
mopac: 22.0.6 -> 22.1.0
 2023-09-28 10:23:28 +02:00
natsukium
c90607c5a7
dssp: 4.4.2 -> 4.4.3 
Diff: https://github.com/PDB-REDO/dssp/compare/refs/tags/v4.4.2...v4.4.3

Changelog: https://github.com/PDB-REDO/libcifpp/releases/tag/refs/tags/v4.4.3
 2023-09-28 15:38:55 +09:00
Markus Kowalewski
6367eb7ffd mopac: 22.0.6 -> 22.1.0 2023-09-27 22:54:32 +02:00
Doron Behar
2112a277f9 lammps: 23Jun2022_update4 -> 2Aug2023_update1 
Diff: https://github.com/lammps/lammps/compare/stable_23Jun2022_update4...stable_2Aug2023_update1
 2023-09-27 17:18:14 +03:00
github-actions[bot]
9a4dae4abd
Merge master into staging-next 2023-09-27 06:01:00 +00:00
github-actions[bot]
2717201e72
Merge master into staging-next 2023-09-26 12:01:28 +00:00
Weijia Wang
5cf0d8d81b
Merge pull request #256231 from r-ryantm/auto-update/uhdm 
uhdm: 1.73 -> 1.74
 2023-09-26 11:38:43 +02:00
Janik
43ea837586
Merge pull request #257328 from kilianar/stellarium-23.3 2023-09-26 10:23:42 +02:00
github-actions[bot]
3bfcfd7eef
Merge master into staging-next 2023-09-26 06:01:00 +00:00
R. Ryantm
272b458b29 gwyddion: 2.61 -> 2.63 2023-09-26 04:43:55 +00:00
Mario Rodas
3fc0d1348b lean4: 4.0.0 -> 4.1.0 
Diff: https://github.com/leanprover/lean4/compare/v4.0.0...v4.1.0

Changelog: https://github.com/leanprover/lean4/blob/v4.1.0/RELEASES.md
 2023-09-26 04:20:00 +00:00
Fabián Heredia Montiel
24dec617bb
Merge pull request #256676 from r-ryantm/auto-update/beluga 
beluga: 1.1 -> 1.1.1
 2023-09-25 21:11:55 -06:00
R. Ryantm
90361534b7 stacks: 2.62 -> 2.65 2023-09-26 03:03:04 +00:00
kilianar
5eb942b80a stellarium: 23.2 -> 23.3 
https://github.com/Stellarium/stellarium/releases/tag/v23.3
 2023-09-25 22:12:36 +02:00
github-actions[bot]
3e52e5929d
Merge master into staging-next 2023-09-25 12:01:02 +00:00
Thiago Kenji Okada
1cfbc68e38
Merge pull request #257014 from r-ryantm/auto-update/hmmer 
hmmer: 3.3.2 -> 3.4
 2023-09-25 12:48:35 +01:00
github-actions[bot]
03a82ba5d4
Merge master into staging-next 2023-09-24 18:00:54 +00:00
Luz
e9c44cb203 librepcb: 0.1.7 -> 1.0.0 2023-09-24 11:41:12 -05:00
Mario Rodas
b289d79b8d hmmer: add changelog to meta 2023-09-24 04:24:00 +00:00
R. Ryantm
272a0e1edb hmmer: 3.3.2 -> 3.4 2023-09-24 04:23:47 +00:00
github-actions[bot]
0e6413dbff
Merge master into staging-next 2023-09-24 00:02:23 +00:00
Dmitry Kalinkin
9e7786c32b
Merge pull request #255928 from bcdarwin/remove-vtk_8 
vtk_8: remove
 2023-09-23 15:50:41 -04:00
github-actions[bot]
3180ce092d
Merge master into staging-next 2023-09-23 12:01:04 +00:00
R. Ryantm
d660b340ee neuron-mpi: 8.2.2 -> 8.2.3 2023-09-23 02:33:53 +00:00
alyaeanyx
d3dfee8256 {libqalculate, qalculate-gtk, qalculate-qt}: 4.8.0 -> 4.8.1 2023-09-22 22:42:11 +02:00
R. Ryantm
c179caee7e ginac: 1.8.6 -> 1.8.7 2023-09-22 20:01:05 +00:00
github-actions[bot]
583877beb2
Merge master into staging-next 2023-09-22 18:01:00 +00:00
László Kupcsik
c678bba28c trimmomatic: init at 0.39 
Co-authored-by: Anderson Torres <torres.anderson.85@protonmail.com>
 2023-09-22 13:50:18 -03:00
github-actions[bot]
3431cedfe3
Merge master into staging-next 2023-09-22 12:01:02 +00:00
R. Ryantm
cf423daab0 beluga: 1.1 -> 1.1.1 2023-09-22 11:56:33 +00:00
Weijia Wang
ca3449710c
Merge pull request #254485 from r-ryantm/auto-update/cvc5 
cvc5: 1.0.7 -> 1.0.8
 2023-09-22 11:14:06 +02:00
github-actions[bot]
4c610adf95
Merge master into staging-next 2023-09-21 12:01:19 +00:00
Vincent Laporte
2abfae9e9b coq: 8.17.1 -> 8.18.0 2023-09-21 11:02:55 +02:00
Doron Behar
8ace65ff3d
treewide: use finalAttrs in all packages I maintain (#255902) 
* mpd-touch-screen-gui: use finalAttrs in mkDerivation; reformat

* musescore: use finalAttrs in mkDerivation

* syncthingtray: use stdenv.mkDerivation with a function; reformat

* ocrfeeder: use finalAttrs in mkDerivation; reformat

* castget: use finalAttrs in mkDerivation

* gnome-network-displays: use finalAttrs in mkDerivation

* mailreaders: use finalAttrs in mkDerivation

* mswatch: use finalAttrs in mkDerivation

* uhd: use finalAttrs in mkDerivation

* maxima: use finalAttrs in mkDerivation

* qalculate-gtk: use finalAttrs in mkDerivation

* qalculate-qt: use finalAttrs in mkDerivation

* wxmaxima: use finalAttrs in mkDerivation

* lammps: use finalAttrs in mkDerivation

* mlterm: use finalAttrs in mkDerivation

* video-trimmer: use finalAttrs in mkDerivation

* nerdfonts: use finalAttrs in mkDerivation

* gnomeExtensions.easyScreenCast: use finalAttrs in mkDerivation

* octave: use finalAttrs in mkDerivation; reformat

* comedilib: use finalAttrs in mkDerivation

* cpp-utilities: use finalAttrs in mkDerivation

* libsForQt5.kpeoplevcard: use finalAttrs in mkDerivation; reformat

* liberio: use finalAttrs in mkDerivation

* libqalculate: use finalAttrs in mkDerivation; reformat

* libwtk-sdl2: use finalAttrs in mkDerivation

* libsForQt5.pulseaudio-qt: use finalAttrs in mkDerivation; reformat

* qrupdate: use finalAttrs in mkDerivation; reformat

* libsForQt5.qtforkawesome: use finalAttrs in mkDerivation; reformat

* libsForQt5.qtutilities: use finalAttrs in mkDerivation; reformat

* sqlitecpp: use finalAttrs in mkDerivation; reformat

* tweeny: use finalAttrs in mkDerivation

* volk: use finalAttrs in mkDerivation

* wiringpi: use finalAttrs in mkDerivation

* snzip: use finalAttrs in mkDerivation; reformat

* bpm-tools: use finalAttrs in mkDerivation; reformat

* sacd: use finalAttrs in mkDerivation

* gtk-gnutella: use finalAttrs in mkDerivation; reformat

* sile: use finalAttrs in mkDerivation

* pplatex: use finalAttrs in mkDerivation; reformat
 2023-09-21 11:31:17 +03:00
Fabián Heredia Montiel
b2f85dbf28 Merge remote-tracking branch 'origin/master' into staging-next 2023-09-20 15:08:16 -06:00
Pol Dellaiera
958c531b62
Merge pull request #256069 from r-ryantm/auto-update/jmol 
jmol: 16.1.35 -> 16.1.39
 2023-09-20 20:00:41 +02:00
github-actions[bot]
8d8feb905e
Merge master into staging-next 2023-09-20 06:01:21 +00:00
R. Ryantm
89081e1fdf uhdm: 1.73 -> 1.74 2023-09-20 04:08:31 +00:00
Weijia Wang
de8116cdb2 nvc: 1.10.2 -> 1.10.3 2023-09-20 00:23:53 +02:00
R. Ryantm
dd4bd3dabb jmol: 16.1.35 -> 16.1.39 2023-09-19 08:55:58 +00:00
github-actions[bot]
3245a21e71
Merge master into staging-next 2023-09-19 06:01:00 +00:00
R. Ryantm
65033fea28 mosdepth: 0.3.4 -> 0.3.5 2023-09-19 00:55:31 +00:00
Ben Darwin
5a82c61519 elmerfem: unstable-2023-02-03 -> 2023-09-18 2023-09-18 13:37:08 -04:00
github-actions[bot]
9fd6a65a3a
Merge master into staging-next 2023-09-18 12:01:07 +00:00
OTABI Tomoya
79b7aacb8b
Merge pull request #255413 from r-ryantm/auto-update/blast 
blast: 2.14.0 -> 2.14.1
 2023-09-18 17:55:58 +09:00
github-actions[bot]
c43057cfb6
Merge staging-next into staging 2023-09-16 18:01:34 +00:00
Mario Rodas
00207520f9
Merge pull request #255313 from kilianar/mpsolve-init 
mpsolve: init at 3.2.1
 2023-09-16 07:48:28 -05:00
github-actions[bot]
7f93574706
Merge staging-next into staging 2023-09-16 06:01:30 +00:00
Artturi
eac4faced1
Merge pull request #254287 from Artturin/sagedocfix1 
sage: If docs are not enabled then don't include a doc attribute
 2023-09-16 06:36:31 +03:00
R. Ryantm
e567f85a64 blast: 2.14.0 -> 2.14.1 2023-09-16 03:10:11 +00:00
kilianar
d82f297d79 mpsolve: init at 3.2.1 2023-09-15 17:44:16 +02:00
Alyssa Ross
4a027948f9
Merge remote-tracking branch 'origin/staging-next' into staging 
Conflicts:
	pkgs/applications/radio/soapysdr/default.nix
 2023-09-14 11:31:01 +00:00
Fabián Heredia Montiel
d32595dad1
Merge pull request #249590 from Luflosi/update/boinc 
boinc: 7.22.2 -> 7.24.1
 2023-09-13 23:26:57 -05:00
figsoda
50d5d15896 egglog: unstable-2023-08-29 -> unstable-2023-09-12 
Diff: c83fc75087...4d67f262a6
 2023-09-13 11:32:01 -04:00
Yorick
e4c9667019
Merge pull request #254490 from Vtec234/master 
drat-trim: 2020-06-05 -> 2023-05-22
 2023-09-13 15:53:03 +02:00
Mario Rodas
48780fa239
Merge pull request #250309 from trofi/angsd-fix-parallel 
angsd: pull patch pending upstream inclusion for parallel build fix
 2023-09-13 06:24:00 -05:00
Fabián Heredia Montiel
37123711fc
Merge pull request #254879 from LibreCybernetics/treewide-vendorhash 
treewide: vendorSha256 → vendorHash
 2023-09-13 02:59:20 -05:00
Fabián Heredia Montiel
ff323ed355 treewide: vendorSha256 → vendorHash 
via: `find pkgs/ -type f -exec sed -i 's/vendorSha256 = "sha256/vendorHash = "sha256/' {};`
 2023-09-13 01:03:44 -06:00
Mario Rodas
fae6b58656
Merge pull request #254848 from r-ryantm/auto-update/cbmc 
cbmc: 5.90.0 -> 5.91.0
 2023-09-12 23:29:01 -05:00
OTABI Tomoya
acc0ac92ee
Merge pull request #250922 from natsukium/viennarna/update 
viennarna: rename from ViennaRNA
 2023-09-13 12:37:50 +09:00
R. Ryantm
1dd61a3ea5 cbmc: 5.90.0 -> 5.91.0 2023-09-13 00:11:49 +00:00
Wojciech Nawrocki
8c55974f89
Update pkgs/applications/science/logic/drat-trim/default.nix 
Co-authored-by: Weijia Wang <9713184+wegank@users.noreply.github.com>
 2023-09-12 14:52:16 -04:00
github-actions[bot]
564dc31f47
Merge staging-next into staging 2023-09-12 18:01:30 +00:00
Wojciech Nawrocki
cf7bdf9486
drat-trim: 2020-06-05 -> 2023-05-22 2023-09-12 12:00:38 -04:00
R. Ryantm
d5e6e8ac03 veryfasttree: 4.0.2 -> 4.0.3 2023-09-12 06:13:28 +00:00
github-actions[bot]
8481e5d2d3
Merge staging-next into staging 2023-09-12 00:02:17 +00:00
Nick Cao
ae7df79dfb
Merge pull request #254499 from marsam/update-elan 
elan: 2.0.1 -> 3.0.0
 2023-09-11 10:16:16 -04:00
R. Ryantm
5165646399 cvc5: 1.0.7 -> 1.0.8 2023-09-11 02:43:36 +00:00
github-actions[bot]
0c33553927
Merge staging-next into staging 2023-09-10 12:02:00 +00:00
Doron Behar
2fa96bfc08
Merge pull request #250435 from tobim/pkgs/spdlog-1.12 
spdlog: 1.11.0 -> 1.12.0
 2023-09-10 10:30:42 +00:00
Mario Rodas
1a5ae14bcb elan: 2.0.1 -> 3.0.0 
Diff: https://github.com/leanprover/elan/compare/v2.0.1...v3.0.0

Changelog: https://github.com/leanprover/elan/blob/v3.0.0/CHANGELOG.md
 2023-09-10 04:20:00 +00:00
github-actions[bot]
6fcb9c7bfa
Merge staging-next into staging 2023-09-10 00:03:30 +00:00
Peder Bergebakken Sundt
584efdc931 netlistsvg: update meta.homepage 2023-09-09 22:53:54 +02:00
Artturin
cf3d29d63f sage: If docs are not enabled then don't include a doc attribute 
there should be no doc attribute if docs are not enabled

the doc attribute is used in nixos/documentation.nix

adeb7629fc/nixos/modules/misc/documentation.nix (L342)

the doc will still be built because the doc attribute exists
 2023-09-09 23:30:11 +03:00
github-actions[bot]
6d1f33a3ed
Merge staging-next into staging 2023-09-09 12:01:22 +00:00
R. Ryantm
ac77a8f7d0 igv: 2.16.1 -> 2.16.2 2023-09-09 05:56:58 +00:00
github-actions[bot]
21efb9220e
Merge staging-next into staging 2023-09-09 00:02:37 +00:00
Peder Bergebakken Sundt
c49f338aeb netlistsvg: init at 1.0.2 2023-09-08 19:23:43 +00:00
Sandro Jäckel
fccf04b620 treewide: replace -DCMAKE_BUILD_TYPE in cmakeFlags with cmakeBuildType 2023-09-08 14:18:26 +00:00
Weijia Wang
71bdfb80b1
Merge pull request #252203 from r-ryantm/auto-update/workcraft 
workcraft: 3.4.0 -> 3.4.1
 2023-09-06 20:49:49 +02:00
Ben Darwin
5bbcb4840b mrtrix: unstable-2021-11-25 -> 3.0.4 2023-09-06 12:11:38 -04:00
Weijia Wang
c0b6bb0677
Merge pull request #253169 from flokli/xmedcon-cherrypick 
xmedcon: update homepage, add wrapGAppsHook
 2023-09-05 23:50:15 +02:00