Merge pull request #63117 from bzizou/macse

macse: init at 2.03

pkgs/applications/science/biology/macse/default.nix

@@ -0,0 +1,32 @@
+{ stdenv, fetchurl, jre, makeWrapper }:
+
+stdenv.mkDerivation rec {
+  pname = "macse";
+  version = "2.03";
+
+  src = fetchurl {
+    url = "https://bioweb.supagro.inra.fr/${pname}/releases/${pname}_v${version}.jar";
+    sha256 = "0jnjyz4f255glg37rawzdv4m6nfs7wfwc5dny7afvx4dz2sv4ssh";
+  };
+
+  nativeBuildInputs = [ makeWrapper ];
+
+  dontBuild = true;
+  unpackPhase = ":";
+
+  installPhase = ''
+    runHook preInstall
+    mkdir -p $out/share/java
+    cp -s $src $out/share/java/macse.jar
+    makeWrapper ${jre}/bin/java $out/bin/macse --add-flags "-jar $out/share/java/macse.jar"
+    runHook postInstall
+  '';
+
+  meta = with stdenv.lib; {
+    description = "Multiple alignment of coding sequences";
+    homepage = "https://bioweb.supagro.inra.fr/macse/";
+    license = licenses.gpl2;
+    maintainers = [ maintainers.bzizou ];
+    platforms = platforms.all;
+  };
+}

pkgs/top-level/all-packages.nix

@@ -22923,6 +22923,8 @@ in
 
   kallisto = callPackage ../applications/science/biology/kallisto { };
 
+  macse = callPackage ../applications/science/biology/macse { };
+
   migrate = callPackage ../applications/science/biology/migrate { };
 
   mirtk = callPackage ../development/libraries/science/biology/mirtk { };