R. Ryantm 7decc89f3e bcftools: 1.20 -> 1.21		2024-09-13 06:20:40 +00:00
..
angsd
ants	ants: 2.5.2 -> 2.5.3	2024-07-25 02:08:42 +00:00
aragorn
astral
bamtools	treewide: remove refs/tags/ from github release meta.changelog urls	2024-08-29 22:45:00 -04:00
bayescan
bcftools	bcftools: 1.20 -> 1.21	2024-09-13 06:20:40 +00:00
bedops
bedtools
bftools
bioawk
blast
bowtie
bowtie2	treewide: remove refs/tags/ from github release meta.changelog urls	2024-08-29 22:45:00 -04:00
bppsuite
bwa
bwa-mem2
cd-hit
clustal-omega
cmtk
conglomerate
dcm2niix	dcm2niix: 1.0.20230411 -> 1.0.20240202	2024-07-09 10:18:52 -04:00
deeptools
delly
diamond
dssp	treewide: remove refs/tags/ from github release meta.changelog urls	2024-08-29 22:45:00 -04:00
ecopcr
eggnog-mapper
emboss
est-sfs
exonerate
EZminc
fastp
flywheel-cli
freebayes
gatk	gatk: 4.5.0.0 -> 4.6.0.0	2024-06-30 01:17:34 +00:00
genmap	treewide: sha256 -> hash attribute for fetchgit	2024-07-14 19:10:08 +08:00
hh-suite
hisat2
hmmer
igv	Only replace actual java commands with the full path	2024-08-29 23:51:23 -07:00
inormalize
iqtree	iqtree: 2.3.5 -> 2.3.6	2024-08-01 14:11:09 +00:00
itsx
iv
jbrowse	jbrowse: 2.14.0 -> 2.15.0	2024-09-04 14:00:01 +00:00
kalign	treewide: remove refs/tags/ from github release meta.changelog urls	2024-08-29 22:45:00 -04:00
kallisto	kallisto: 0.50.1 -> 0.51.0	2024-08-02 11:16:03 +00:00
kent	kent: 467 -> 468	2024-07-16 04:00:44 +00:00
kssd
last	last: 1548 -> 1550	2024-07-23 00:58:03 +00:00
macs2	macs2: refactor	2024-06-24 12:18:27 +02:00
macse
mafft
manta
megahit
meme-suite
messer-slim
migrate	treewide: fix uses of finalAttrs.pname in source urls	2024-07-12 20:23:39 -04:00
minc-tools	minc-tools: unstable-2020-07-25 -> 2.3.06-unstable-2023-08-12	2024-09-07 13:57:40 -04:00
minc-widgets
minia
minimap2
mmseqs2
mni_autoreg
mrbayes	treewide: remove unused with statements from maintainer lists	2024-07-29 10:06:20 +08:00
mrtrix
muscle
N3
nest	nest: 3.7 -> 3.8	2024-08-03 02:21:53 +00:00
neuron	python312Packages.neuronpy: 8.2.4 -> 8.2.6	2024-07-25 15:04:43 +00:00
niftyreg
niftyseg
obitools
octopus
paml	treewide: remove refs/tags/ from github release meta.changelog urls	2024-08-29 22:45:00 -04:00
picard-tools	picard-tools: 3.1.1 -> 3.2.0	2024-06-28 01:41:05 +00:00
platypus
plink-ng
prodigal
quast
raxml
repseek
sambamba	treewide: sha256 -> hash attribute for fetchgit	2024-07-14 19:10:08 +08:00
samblaster
samtools
seaview
seqkit
seqtk
snpeff
somatic-sniper
sortmerna
stacks
star
strelka
subread
sumatools
svaba
tebreak
treemix
trf
trimal	trimal: 1.4.1 -> 1.5.0	2024-07-02 19:20:38 +00:00
trimmomatic
truvari	truvari: 4.1.0 -> 4.2.2	2024-07-04 21:38:05 +09:00
varscan
vcftools
veryfasttree
whisper
xenomapper