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8003 Commits

Author SHA1 Message Date
Lassulus
43fd3a94bb
Merge pull request #245215 from idlip/pspp-bump 
pspp: 1.4.1 -> 1.6.2
 2023-08-14 20:34:03 +02:00
7c6f434c
6221aed0d1
Merge pull request #247359 from xworld21/R-sweave-tex 
R: split tex output for use with texlive.combine
 2023-08-14 16:50:01 +00:00
Pascal Bach
1f546bd2bc
Merge pull request #247575 from lorenz/dsview-1-3-0 
dsview: 1.2.2 -> 1.3.0
 2023-08-14 13:31:47 +02:00
Mauricio Collares
32c7b9a220
Merge pull request #249003 from r-ryantm/auto-update/jmol 
jmol: 16.1.13 -> 16.1.33
 2023-08-14 11:11:21 +02:00
Artturi
aab90d8714
Merge pull request #248817 from Artturin/reffixes1 2023-08-14 09:13:40 +03:00
Nick Cao
8500983a14
Merge pull request #248856 from NickCao/eigenmath 
eigenmath: unstable-2023-06-16 -> unstable-2023-08-03
 2023-08-13 22:35:58 -06:00
R. Ryantm
b3e6bcb605 jmol: 16.1.13 -> 16.1.33 2023-08-14 00:00:24 +00:00
Weijia Wang
f6538bb83a eigenmath: set platforms 2023-08-13 17:31:58 +02:00
Weijia Wang
5075896acb
Merge pull request #247626 from r-ryantm/auto-update/fast-downward 
fast-downward: 22.12.0 -> 23.06.0
 2023-08-13 13:49:08 +02:00
Nick Cao
b09606fc0a
eigenmath: unstable-2023-06-16 -> unstable-2023-08-03 
Diff: 800adc5c0b...f202cf0c34
 2023-08-13 15:50:40 +08:00
Artturin
25eef24033 treewide: Don't hardcode nix store in patchelf calls 2023-08-13 05:44:01 +03:00
Theodore Ni
851d2f6b95
macs2: 2.2.8 -> 2.2.9.1 2023-08-11 14:45:45 -07:00
Jan Malakhovski
591ccfe5b9 treewide: noop: refer to src.name or similar where appropriate, part 3: more use cases 
This continues where d8f7f6a5ce left off. Similarly
to that commit, this commit this also points `sourceRoot`s to `src.name` and similar
instead of keeping hardcoded names, and edits other derivation attrs do do the same,
where appropriate.

Also, similarly to d8f7f6a5ce some of expressions this
edits use `srcs` attribute with customly-named sources, so they have to be moved
into `let` blocks to keep evaluation efficient (the other, worse, way to do this
would to recurcively refer to `elemAt n finalAttrs.srcs` or, similarly, with `rec`).
 2023-08-11 09:20:44 +00:00
Nick Cao
39f729e827
Merge pull request #248258 from r-ryantm/auto-update/cbmc 
cbmc: 5.88.1 -> 5.89.0
 2023-08-10 19:30:18 -06:00
Nick Cao
f6f59fdce7
Merge pull request #248280 from r-ryantm/auto-update/seqkit 
seqkit: 2.5.0 -> 2.5.1
 2023-08-09 23:23:15 -06:00
R. Ryantm
6d530a6389 seqkit: 2.5.0 -> 2.5.1 2023-08-10 04:42:38 +00:00
R. Ryantm
7dbd412737 cbmc: 5.88.1 -> 5.89.0 2023-08-10 02:27:01 +00:00
figsoda
a69648b581 egglog: unstable-2023-07-19 -> unstable-2023-08-09 
Diff: 9fe03ad35a...de31786679
 2023-08-09 16:46:12 -04:00
figsoda
fba2eab4c0 reason-shell: init at 0.3.10 
https://github.com/jaywonchung/reason
 2023-08-08 14:51:53 +00:00
Janik
777fcd15e2
Merge pull request #245677 from fsagbuya/linux-gpib 2023-08-08 14:52:14 +02:00
Vincenzo Mantova
fb4da9bcad R: split tex output for use with texlive.combine 2023-08-08 11:37:56 +01:00
github-actions[bot]
dd48ee46cf
Merge master into staging-next 2023-08-07 12:00:52 +00:00
Weijia Wang
c34272e65c
Merge pull request #247623 from r-ryantm/auto-update/samtools 
samtools: 1.17 -> 1.18
 2023-08-07 13:50:07 +02:00
Vladimír Čunát
a93afc73ef
polymake: pin back to perl 5.36 
https://hydra.nixos.org/build/230316833/nixlog/2/tail
 2023-08-07 08:52:10 +02:00
R. Ryantm
06fadebc20 libpoly: 0.1.11 -> 0.1.13 2023-08-07 04:40:37 +00:00
R. Ryantm
2f9afe24c3 fast-downward: 22.12.0 -> 23.06.0 2023-08-07 01:43:33 +00:00
R. Ryantm
a303664816 samtools: 1.17 -> 1.18 2023-08-07 01:22:06 +00:00
Lorenz Brun
c317e99ee7 dsview: 1.2.2 -> 1.3.0 
The new version is also Qt 6 compatible, so use this opportunity to
switch to Qt 6.
 2023-08-06 22:29:50 +02:00
github-actions[bot]
191e60634e
Merge master into staging-next 2023-08-06 18:01:04 +00:00
Mario Rodas
156a49aa49
Merge pull request #236810 from natsukium/cmtk/update 
cmtk: 3.3.1 -> 3.3.2; fix darwin build
 2023-08-06 11:51:18 -05:00
natsukium
edc5d13ef3
streamlit: manage as python-modules 2023-08-06 22:55:01 +09:00
github-actions[bot]
6458cb74a2
Merge master into staging-next 2023-08-05 12:01:30 +00:00
Mauricio Collares
91c8b652db
Merge pull request #246980 from collares/sage-next-20230728 
[staging-next] sage: numpy/scipy upgrade patches
 2023-08-05 10:14:27 +02:00
Doron Behar
82326d676d
Merge pull request #247122 from doronbehar/pkg/lammps 
lammps: 23Jun2022_update4 -> 2Aug2023
 2023-08-05 08:00:23 +00:00
Nick Cao
bbe9ae26ec
Merge pull request #247159 from panicgh/dataexplorer 
dataexplorer: 3.7.8 -> 3.7.9
 2023-08-05 00:27:43 -06:00
Andrey Alekseenko
2f707365e2 gromacs: update meta 
- license is now lgpl21Plus
- accurate longDescription
 2023-08-05 00:44:04 +00:00
Weijia Wang
70f066f77f
Merge pull request #247155 from wegank/beluga-hash 
beluga: fix hash
 2023-08-04 22:10:47 +02:00
Weijia Wang
5c9ba9e55c
Merge pull request #246863 from r-ryantm/auto-update/picard-tools 
picard-tools: 3.0.0 -> 3.1.0
 2023-08-04 21:17:27 +02:00
Weijia Wang
ac82995363
Merge pull request #247137 from wegank/guile-platforms-3 
treewide: reduce guile_2_0 usage
 2023-08-04 20:36:06 +02:00
Weijia Wang
d4e52e4564 beluga: fix hash 2023-08-04 19:48:22 +02:00
Weijia Wang
c39c0479dd geda: 1.8.2-20130925 -> 1.10.2 2023-08-04 19:10:54 +02:00
Vincent Laporte
14651559b5 hol_light: 2019-10-06 → 2023-07-21 2023-08-04 18:15:31 +02:00
Doron Behar
4939850514 lammps: 23Jun2022_update4 -> 2Aug2023 2023-08-04 17:48:40 +03:00
Nicolas Benes
afd76e93e3 dataexplorer: 3.7.8 -> 3.7.9 2023-08-04 14:19:25 +02:00
markuskowa
394beeefa6
Merge pull request #246983 from sheepforce/molcas-qcmaquis 
openmolcas: enable dmrg and nevpt2 support
 2023-08-04 10:55:44 +02:00
Jan Malakhovski
5852f26bdc treewide: noop: refer to src.name or similar in sourceRoot where appropriate, part 1: trivial cases 2023-08-03 16:32:03 +00:00
Weijia Wang
029622d055
Merge pull request #246876 from wegank/jogl-platforms 
gephi, processing: support more platforms
 2023-08-03 17:47:40 +02:00
Phillip Seeber
eacf49d19e openmolcas: enable dmrg and nevpt2 support 2023-08-03 17:34:32 +02:00
Mauricio Collares
c0f4dc2f59
Merge pull request #246573 from CRTified/sage-overrideScope 
sage: use overrideScope instead of packageOverrides
 2023-08-03 17:02:44 +02:00
Weijia Wang
c9b8162d3d gephi: unrestrict platforms 2023-08-03 15:33:20 +02:00