github-actions[bot]
1ac9e3255b
Merge staging-next into staging
2022-12-03 06:02:18 +00:00
Weijia Wang
eac8b51565
flopoco: init at 4.1.3 ( #200459 )
...
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
2022-12-03 05:26:22 +01:00
John Shaffer
9d8767be46
xcircuit: 3.10.12 -> 3.10.37, maintain
2022-12-02 21:57:29 -06:00
Weijia Wang
07cd65bea2
treewide: drop wxGTK30-gtk2
2022-12-03 03:28:32 +01:00
Martin Weinelt
e3da5a807b
Merge remote-tracking branch 'origin/staging-next' into staging
2022-12-03 01:28:01 +01:00
Sandro
e461e83aa7
Merge pull request #191966 from jvanbruegge/isabelle-2022
2022-12-03 00:45:47 +01:00
Pavol Rusnak
85f5d65b7e
Merge pull request #204149 from wegank/viennarna-bump
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ViennaRNA: 2.4.18 -> 2.5.1, unbreak on aarch64-darwin
2022-12-03 00:23:09 +01:00
Vincent Laporte
188b935b6d
alt-ergo: fix version string
2022-12-03 00:00:05 +01:00
Weijia Wang
df1810c6e8
ViennaRNA: 2.4.18 -> 2.5.1
2022-12-02 18:20:04 +01:00
R. RyanTM
132e60b840
calc: 2.14.1.0 -> 2.14.1.2
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Also fixed GitHub source url.
2022-12-02 18:02:05 +08:00
github-actions[bot]
c14692be87
Merge staging-next into staging
2022-11-30 18:01:46 +00:00
Mario Rodas
227de2b3bb
Merge pull request #203387 from wegank/formula-aarch64-linux
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formula: unbreak on aarch64-linux
2022-11-30 07:02:00 -05:00
github-actions[bot]
3f79042e89
Merge staging-next into staging
2022-11-29 12:02:06 +00:00
Weijia Wang
280b4b8279
root: fix build on aarch64-linux ( #203267 )
2022-11-29 01:41:49 -05:00
Martin Weinelt
df2d130ee0
python3Packages.dataclasses: drop
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Only required on python36, which was dropped a while ago.
2022-11-29 01:34:58 +01:00
Mauricio Collares
9102f78309
Merge pull request #192525 from r-ryantm/auto-update/pari
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pari: 2.13.4 -> 2.15.1
2022-11-28 20:58:42 -03:00
Jack Gerrits
c5be637c72
vowpal-wabbit: 9.0.1 -> 9.6.0
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- flatbuffers removed as a dep as the upstream doesn't support installing with flatbuffer support currently and this is an experimental feature
- BUILD_TESTS workaround removed as upstream now properly understands BUILD_TESTING
- `eigen` is a new dependency in this release
- Removed `USE_LATEST_STD` as it was causing an ICE in clang when building on an m1 macbook and it is not strictly necessary for the package
2022-11-29 00:02:14 +08:00
Mauricio Collares
40fddeb8fc
giac: mark as broken on aarch64-darwin
2022-11-28 09:33:10 -03:00
Weijia Wang
31dae4a6c0
formula: unbreak on aarch64-linux
2022-11-28 02:56:13 +01:00
Sandro
853077236a
Merge pull request #202124 from SuperSandro2000/dbus-passthru-daemon
2022-11-28 01:35:34 +01:00
Mauricio Collares
3b258a60a6
sage: import pari 2.15.1 update patch
2022-11-27 20:39:59 -03:00
R. Ryantm
081289609e
pari: 2.13.4 -> 2.15.1
2022-11-27 20:39:59 -03:00
Robert Scott
d2504ace98
Merge pull request #203249 from aaronjheng/streamlit
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streamlit: 1.13.0 -> 1.15.0
2022-11-27 23:10:22 +00:00
Mauricio Collares
dad9d4f76e
Merge pull request #203170 from jiegec/pari
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pari: unbreak on aarch64-darwin
2022-11-27 15:15:19 -03:00
Aaron Jheng
8bed9cc42f
streamlit: 1.13.0 -> 1.15.0
2022-11-27 12:57:33 +00:00
Jiajie Chen
91e59727c0
pari: unbreak on aarch64-darwin
2022-11-27 09:39:27 +08:00
K900
420fd2d25b
graphia: 3.1 -> 3.2
2022-11-26 15:49:07 +03:00
Nikolay Korotkiy
bb92198f4c
geogebra6: 6-0-723-0 → 6-0-745-0
2022-11-26 14:17:44 +03:00
Nikolay Korotkiy
5b4bf09237
geogebra6: fix the meta data to allow autoupdate
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Resolve #188260
2022-11-26 13:58:19 +03:00
Nikolay Korotkiy
ec635b51d6
geogebra: 5-0-723-0 → 5-0-745-0
2022-11-26 13:39:52 +03:00
Robert Schütz
be1fe08f79
surelog: use latest OpenJDK
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OpenJDK 11 depends on Python 2.
2022-11-25 20:10:49 -08:00
Sandro
bf8865dc28
Merge pull request #198871 from wegank/aspino-aarch64-darwin
2022-11-25 20:12:58 +01:00
Weijia Wang
c00ddaf144
aspino: remove patchShebangs
2022-11-25 16:48:27 +01:00
Weijia Wang
fc653e9de0
avy: fix build on aarch64-linux
2022-11-25 16:48:03 +01:00
Weijia Wang
ee09ecaca2
glucose: fix build on aarch64-linux
2022-11-25 16:48:03 +01:00
Weijia Wang
017015a82b
aspino: fix build
2022-11-25 16:48:03 +01:00
Bobby Rong
e34bc8cc1a
Merge pull request #198055 from jdupak/master
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QtRVSim: 0.9.3 -> 0.9.4
2022-11-25 22:50:43 +08:00
Bobby Rong
4315ef82eb
Merge pull request #202657 from 4825764518/master
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qalculate-qt: update supported platforms
2022-11-25 21:51:45 +08:00
R. Ryantm
d9af397634
cbmc: 5.70.0 -> 5.71.0
2022-11-25 08:37:13 +00:00
Jonas Heinrich
20193b6d86
Merge pull request #202395 from thyol/muscle
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muscle: 3.8.31 -> 5.1.0
2022-11-24 15:47:12 +01:00
Guillaume Girol
6f9188b26b
Merge pull request #201759 from collares/giac-1.9.0.29
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giac: 1.9.0-5 -> 1.9.0-29
2022-11-24 14:16:03 +00:00
Jonas Heinrich
57728b51cf
Merge pull request #202404 from thyol/veryfasttree
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veryfasttree: init at 3.1.1
2022-11-24 15:14:13 +01:00
Sandro
2ca694f473
Merge pull request #198552 from wegank/wxgtk-games
2022-11-24 14:21:25 +01:00
4825764518
9c363bae16
qalculate-qt: update supported platforms
2022-11-24 05:37:05 -05:00
R. Ryantm
471d8bb07a
opensmt: 2.4.2 -> 2.4.3
2022-11-22 20:15:56 +00:00
thyol
cdcb7946ba
veryfasttree: init at 3.1.1
2022-11-22 20:45:45 +01:00
thyol
35d3a6fa79
muscle: add myself to maintainers
2022-11-22 20:19:17 +01:00
thyol
d7c8595f62
muscle: 3.8.31 -> 5.1.0
2022-11-22 20:19:17 +01:00
R. Ryantm
7e88b2bef5
form: 4.2.1 -> 4.3.0
2022-11-22 12:01:40 -05:00
thyol
81d6f1c7dc
sratoolkit: init at 2.11.3
2022-11-21 20:27:28 +01:00
Sandro Jäckel
c7f5becba3
dbus: remove unused daemon passhtru
2022-11-21 20:23:00 +01:00
R. Ryantm
6ba0d20487
igv: 2.14.1 -> 2.15.1
2022-11-20 14:06:29 +08:00
R. Ryantm
862277ac9d
kstars: 3.6.0 -> 3.6.1
2022-11-20 10:52:50 +08:00
Markus Kowalewski
57d39374e2
gromacs: 2022.3 -> 2022.4
2022-11-18 14:37:22 +01:00
Mauricio Collares
339f72586a
giac: 1.9.0-5 -> 1.9.0-29
2022-11-18 09:15:22 -03:00
Pascal Bach
b85c2a060f
Merge pull request #200871 from lorenz/update-dsview
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dsview: 1.1.2 -> 1.2.1
2022-11-16 21:18:59 +01:00
sternenseemann
a110f08f12
ocamlPackages.extlib: rename from ocaml_extlib
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This matches the name used in dune and on OPAM.
2022-11-16 14:30:37 +01:00
Grace Dinh
d3153abe7d
accelergy: init at unstable-2022-05-03
2022-11-15 17:06:02 -08:00
Sandro Jäckel
da3200b7b6
Revert "gplates: fix failing build"
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This reverts commit 8a236e246a
2022-11-16 00:29:02 +01:00
Sergei Trofimovich
e4d99ffc58
Merge pull request #201383 from yurket/d-seams_zhf_fix
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d-seams: fix failing build
2022-11-15 22:57:02 +00:00
yurket
4e4a021fd7
d-seams: fix failing builds
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cxxopts failing to build with clang11:
/build/source/src/include/external/cxxopts.hpp:488:42: error: no member named 'numeric_limits' in namespace 'std'
if (u > static_cast<U>(-std::numeric_limits<T>::min()))
Use the patch from upstream, which updates cxxopts 2.2.0 -> 3.0.0
2022-11-15 14:05:05 -08:00
Aaron Jheng
678ccdf716
element: mark as broken on darwin
2022-11-14 02:16:43 +00:00
Robert Scott
ea6d354b84
Merge pull request #201044 from fedeinthemix/update-xyce
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xyce: 7.4.0 -> 7.6.0
2022-11-13 20:13:29 +00:00
Federico Beffa
d36e0be2ea
xyce: 7.4.0 -> 7.6.0
2022-11-13 16:41:14 +01:00
Mario Rodas
16df31b2cd
Merge pull request #200755 from collares/lean-3.49.0
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lean: 3.48.0 -> 3.49.0
2022-11-13 09:04:08 -05:00
Robert Schütz
61c207555b
hal-hardware-analyzer: use igraph 0.9
2022-11-12 20:07:20 -08:00
yurket
8a236e246a
gplates: fix failing build
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Started failing after the commit 11ea0e99b7
2022-11-12 11:33:42 -08:00
Lorenz Brun
c35b5503f4
dsview: 1.1.2 -> 1.2.1
2022-11-12 16:04:11 +01:00
Mauricio Collares
c87af38741
lean: 3.48.0 -> 3.49.0
2022-11-11 17:33:01 -03:00
R. Ryantm
139ba95570
cbmc: 5.69.1 -> 5.70.0
2022-11-11 18:08:36 +08:00
Weijia Wang
699e05b52a
root5: migrate to gsl ( #200455 )
2022-11-10 18:59:19 -05:00
7c6f434c
511bbd4c78
Merge pull request #200059 from r-ryantm/auto-update/clingo
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clingo: 5.6.1 -> 5.6.2
2022-11-10 10:32:04 +00:00
Shamrock Lee
a664ec27f4
root: add package test test-thisroot
2022-11-10 09:27:35 +08:00
Shamrock Lee
7f91dec5dd
root: wrap the executable and patch thisroot.*
2022-11-10 09:23:52 +08:00
Dmitry Kalinkin
25fd03cf72
Merge pull request #200412 from wegank/root-darwin
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root: 6.26.06 -> 6.26.08
2022-11-09 18:16:38 -05:00
Weijia Wang
d474e39f7d
root: fix build on aarch64-darwin
2022-11-09 21:03:59 +01:00
Weijia Wang
5d5c6ded1a
root: 6.26.06 -> 6.26.08
2022-11-09 18:19:45 +01:00
Shamrock Lee
0106a68555
root: enable davix and ssl support ( #200096 )
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This enables CERN ROOT to open file urls with scheme
`davs://` and `https://`.
The inclusion of `openssl` in buildInputs
will increase neither closure size nor rebuild frequency,
since `python3`, which depends on `openssl`, is already a dependency.
2022-11-09 11:31:37 -05:00
Fabian Affolter
95ed815b50
Merge pull request #200234 from r-ryantm/auto-update/delly
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delly: 1.1.5 -> 1.1.6
2022-11-09 08:00:15 +01:00
Artturi
3e2445be79
Merge pull request #200145 from hzeller/20221107-update-surelog-uhdm-plugin
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Fix for darwin build.
2022-11-09 02:09:35 +02:00
Weijia Wang
e0e6444e50
boinc: unbreak on aarch64-linux
2022-11-09 00:59:14 +01:00
Henner Zeller
50c509ecf3
surelog: 1.40 -> 1.45
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Update Surelog (going along with uhdm 1.45). Fix flaky tests
to to parallel execution of ctest by patching in a fix that is
already upstream.
Result zero hydra failures #199919
Also: using flatbuffers from nix environment instead of third_party/
Signed-off-by: Henner Zeller <h.zeller@acm.org>
2022-11-08 12:47:27 -08:00
Henner Zeller
568398e338
uhdm: 0.9.1.40 -> 1.45
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Update UHDM and also fix for Darwin build.
The gtest version used in the project unconditionally uses
/tmp as temporary directory in Darwin and does not honor the
environment variables introduced in gtest 1.12.
Use that gtest version so that it will work in the Hydra
build environment.
Related: #199919 as this is fixing the Darwin build.
Signed-off-by: Henner Zeller <h.zeller@acm.org>
2022-11-08 12:47:14 -08:00
R. Ryantm
c7ba9b459c
delly: 1.1.5 -> 1.1.6
2022-11-08 18:21:37 +00:00
Fabian Affolter
9ac3253434
Merge pull request #200024 from fabaff/docker-bump
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python310Packages.docker: 6.0.0 -> 6.0.1
2022-11-08 15:48:02 +01:00
Fabian Affolter
cad704eb95
toil: 5.6.0 -> 5.7.1
2022-11-08 12:17:40 +01:00
Mario Rodas
f84d890770
Merge pull request #199530 from NickCao/stellarium_11
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stellarium: 1.0 -> 1.1
2022-11-08 03:15:29 -05:00
Justin Bedő
3a90ab68e6
Merge pull request #197631 from jbedo/octopus
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octopus-caller: backport patch to fix build
2022-11-07 21:26:21 +00:00
Mauricio Collares
fc9eb96278
Merge pull request #198355 from collares/sage-libgap-aarch64
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sage: fix aarch64 crashes and skip problematic test
2022-11-07 17:53:09 -03:00
R. Ryantm
f77d334af1
clingo: 5.6.1 -> 5.6.2
2022-11-07 17:55:20 +00:00
R. Ryantm
a8ed4be9a6
gmsh: 4.10.5 -> 4.11.0
2022-11-07 11:31:21 +00:00
amesgen
4a3fc076e4
clingcon: 5.0.0 -> 5.2.0 and fix build
2022-11-07 00:41:21 +01:00
Mario Rodas
5b06368259
Merge pull request #199623 from wegank/kicad-wxgtk
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kicad: migrate to wxGTK32
2022-11-05 16:31:07 -05:00
Nick Cao
e562fc6e05
stellarium: build with qt6
2022-11-05 21:39:24 +08:00
Nick Cao
f2870ff9e2
calcmysky: build with qt6
2022-11-05 21:39:10 +08:00
Nick Cao
74fd5f0cba
stellarium: 1.0 -> 1.1
2022-11-05 21:37:59 +08:00
Nick Cao
b105efc145
calcmysky: 0.1.0 -> 0.2.1
2022-11-05 21:37:59 +08:00
markuskowa
e2cf8ac376
Merge pull request #199331 from markuskowa/fix-arpack
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arpack: fix ILP64 checks and MPI support
2022-11-05 12:37:35 +01:00
Weijia Wang
0b894f5564
kicad: migrate to wxGTK32
2022-11-05 03:35:27 +01:00
Mauricio Collares
079200691f
sage: patches to fix aarch64 crashes and skip known timeout
2022-11-04 16:09:51 -03:00
Valentin Gagarin
b02d74fb5e
Merge pull request #173225 from matthuszagh/uhdm
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Add systemverilog plugin to yosys
2022-11-04 18:37:13 +01:00
Christian Kögler
759bbe2f57
Merge pull request #190900 from bzizou/seqkit
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seqkit: init at 2.3.1
2022-11-04 16:48:40 +01:00
Sandro
8f679a5327
Merge pull request #194031 from NickCao/stellarium
2022-11-04 15:33:03 +01:00
7c6f434c
58f6230338
Merge pull request #192548 from collares/gap-4.12
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gap: 4.11.1 -> 4.12.1
2022-11-04 08:01:40 +00:00
Bruno Bzeznik
9243a44c9c
seqkit: init at 2.3.1
2022-11-04 08:51:32 +01:00
Markus Kowalewski
8c3d2bab83
calculix: add blas, lapack, arpack ILP64 checks
2022-11-03 12:59:44 +01:00
Markus Kowalewski
b931e2bb82
octopus: add arpack ILP64 check
2022-11-03 12:50:08 +01:00
Weijia Wang
7f0b7f4cf3
fityk: migrate to wxGTK32
2022-11-03 11:49:13 +01:00
markuskowa
c14386f1ed
Merge pull request #199025 from r-ryantm/auto-update/element
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element: 1.0.0 -> 1.0.1
2022-11-02 21:46:19 +01:00
Austin Seipp
3afaf7d263
verilator: enable doCheck = true
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Based on the work from yangm2 in #109493 .
Co-authored-by: yangm2 <yangm2@users.noreply.github.com>
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2022-11-02 07:55:30 -05:00
Austin Seipp
5ceadb26b8
verilator: 4.226 -> 5.002
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Signed-off-by: Austin Seipp <aseipp@pobox.com>
2022-11-02 07:55:30 -05:00
R. Ryantm
f75ed7fcef
element: 1.0.0 -> 1.0.1
2022-11-01 18:43:56 +00:00
Stanisław Pitucha
9ed8ce7ff3
Merge pull request #198609 from natsukium/mmseqs2/init
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mmseqs2: init at 14-7e284
2022-11-01 21:47:20 +11:00
Jan van Brügge
fa28ed4858
isabelle-linter: 2021-1 -> 2022-09-05
2022-10-31 20:06:03 +00:00
Jan van Brügge
f6b110fb50
isabelle: 2021-1 -> 2022
2022-10-31 20:06:00 +00:00
natsukium
ed7511ad02
mmseqs2: init at 14-7e284
2022-10-31 23:49:10 +09:00
Nikolay Korotkiy
015979436c
Merge pull request #198374 from jiegec/ngspice-darwin
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ngspice: add darwin to platforms
2022-10-31 08:26:36 +03:00
Bobby Rong
fa6834cf70
Merge pull request #198648 from evils/kicad
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kicad: 6.0.8 -> 6.0.9
2022-10-31 12:17:55 +08:00
Thiago Kenji Okada
2e7242bbb9
Merge pull request #188939 from luc65r/cemu-ti
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cemu-ti: 1.3 -> unstable-2022-06-29
2022-10-31 00:36:24 +00:00
Thiago Kenji Okada
b2bb7c1348
cemu-ti: update license
2022-10-30 23:22:01 +00:00
Sandro
65d82645b9
Merge pull request #185507 from OPNA2608/update/d-compilers
2022-10-30 23:02:43 +01:00
Anderson Torres
eb7b3043ff
Merge pull request #195226 from mgttlinger/nusmv
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nusmv: init at 2.6.0
2022-10-30 16:03:23 -03:00
Sandro
412b9917ce
Merge pull request #198064 from wegank/wxgtk31-drop-gtk2
2022-10-30 16:09:59 +01:00
Jiajie Chen
4941d433fa
ngspice: add darwin to platforms
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ngspice can build and run on darwin.
2022-10-30 22:19:08 +08:00
Evils
b2f1884dd8
kicad: 6.0.8 -> 6.0.9
2022-10-30 14:00:01 +01:00
markuskowa
89857e684f
Merge pull request #198463 from r-ryantm/auto-update/cbmc
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cbmc: 5.69.0 -> 5.69.1
2022-10-29 23:23:02 +02:00
Samuel Ainsworth
b647155e5b
mujoco: init at 2.3.0 ( #198145 )
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* mujoco: init at 2.3.0
* mujoco: refactor `meta`
Co-authored-by: Florian <florian.brandes@posteo.de>
Co-authored-by: Florian <florian.brandes@posteo.de>
2022-10-29 11:47:32 -07:00
R. Ryantm
4db4ddf01a
cbmc: 5.69.0 -> 5.69.1
2022-10-29 13:42:50 +00:00
R. Ryantm
0ef660daa1
gnuastro: 0.18 -> 0.19
2022-10-29 05:17:40 +00:00
Mauricio Collares
41b59d27e4
sage: import gap update patch
2022-10-28 18:28:03 -03:00
Mauricio Collares
90eca1d362
gap: 4.11.1 -> 4.12.1
2022-10-28 18:20:03 -03:00
R. Ryantm
52b1e28293
cbmc: 5.68.0 -> 5.69.0
2022-10-28 16:23:12 +08:00
Weijia Wang
30d66019b4
wxGTK31: drop gtk2 support
2022-10-27 15:30:15 +02:00
R. Ryantm
11cca34608
qgroundcontrol: 4.2.3 -> 4.2.4
2022-10-27 21:19:31 +08:00
Jakub Dupak
57069c3366
QtRVSim: 0.9.3 -> 0.9.4
2022-10-27 13:27:37 +02:00
Jan van Brügge
269c1f5e90
naproche: 2022-04-19 -> 2022-10-24
2022-10-26 12:10:09 +01:00
7c6f434c
02835f2253
Merge pull request #197645 from r-ryantm/auto-update/opensmt
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opensmt: 2.4.1 -> 2.4.2
2022-10-25 16:04:34 +00:00
Bobby Rong
256da9655f
Merge pull request #192797 from wucke13/inav-configurator
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inav-configurator: 4.1.0 -> 5.1.0
2022-10-25 21:12:11 +08:00
R. Ryantm
1401fdb2d4
opensmt: 2.4.1 -> 2.4.2
2022-10-25 02:23:41 +00:00
Justin Bedo
5f5bb45093
octopus-caller: backport patch to fix build
2022-10-25 09:52:28 +11:00
Dmitry Kalinkin
cde19b8469
Merge pull request #197306 from veprbl/pr/dawncut_init
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dawncut: init at 1.54a
2022-10-24 16:38:58 -04:00
markuskowa
f67325ac2c
Merge pull request #197390 from markuskowa/upd-openmolcas
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openmolcas: 22.06 -> 22.10
2022-10-24 10:55:56 +02:00
Markus Kowalewski
bd5597dce4
openmolcas: 22.06 -> 22.10
2022-10-23 18:06:56 +02:00
Markus Kowalewski
f6771d4d15
octopus: 12.0 -> 12.1
2022-10-23 17:51:24 +02:00
OPNA2608
982a1bfd80
sambamba: fix compilation on Darwin, cleanup installPhase
2022-10-23 16:12:47 +02:00
fee1-dead
93e729e432
wolfram-engine: fix Qt ( #195814 )
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This is necessary for using wolfram-notebook, which calls wolframplayer
where the latter would segfault if Qt plugins are not found.
2022-10-23 00:15:12 -04:00
Dmitry Kalinkin
62b5fa807f
dawn: provide path to wish for the GUI
2022-10-22 22:04:23 -04:00
Dmitry Kalinkin
5375f83194
dawncut: init at 1.54a
2022-10-22 21:52:40 -04:00
Robert Scott
31acb601e3
Merge pull request #196812 from smaret/fix-gildas-python
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gildas: restore Python support
2022-10-22 17:07:30 +01:00
github-actions[bot]
71e4896d63
Merge master into staging-next
2022-10-22 12:01:25 +00:00
