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5137 Commits

Author SHA1 Message Date
Ryan Burns
2df1874125
Merge pull request #141430 from r-ryantm/auto-update/MAVProxy 
mavproxy: 1.8.44 -> 1.8.45
 2021-10-12 17:59:17 -07:00
R. RyanTM
f9da99e40d mavproxy: 1.8.44 -> 1.8.45 2021-10-13 00:39:29 +00:00
Sergei Trofimovich
b18a746169
yices: 2.6.1 -> 2.6.3 (#141241) 
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2021-10-12 23:09:47 +02:00
Sandro
1aac6f3b28
Merge pull request #141302 from felixsinger/pkgs/gtkwave/update 2021-10-12 21:38:24 +02:00
Vincent Laporte
17e2fbf2dc alt-ergo: 2.4.0 → 2.4.1 2021-10-12 14:41:54 +02:00
Sandro
2017c3a883
Merge pull request #141301 from jbedo/samtools 2021-10-12 11:30:07 +02:00
Felix Singer
c1ecf6d2b4 gtkwave: 3.3.110 -> 3.3.111 
Update GTKWave to latest release. Also, reformat default.nix.

Signed-off-by: Felix Singer <felixsinger@posteo.net>
 2021-10-12 01:40:44 +02:00
Justin Bedo
02a1a2b3c8
samtools: 1.11 -> 1.13 2021-10-12 10:19:36 +11:00
Artturi
d5ac63708f
Merge pull request #135133 from r-ryantm/auto-update/emuflight-configurator 2021-10-11 21:03:27 +03:00
Gabriel Ebner
9044534a8d elan: 1.0.7 -> 1.1.0 2021-10-09 20:06:10 +02:00
Ryan Burns
5170bbc015
Merge pull request #140689 from r-ryantm/auto-update/MAVProxy 
mavproxy: 1.8.43 -> 1.8.44
 2021-10-09 00:43:10 -07:00
markuskowa
14ab975a71
Merge pull request #140975 from sheepforce/avogadro2-updates 
avogadro2: 1.94.0 -> 1.95.1
 2021-10-08 22:02:11 +02:00
Phillip Seeber
aa02e7f828 avogadro2: initialise a translation repo 2021-10-08 14:43:13 +02:00
Phillip Seeber
181689dfea avogadro2: 1.94.0 -> 1.95.1 2021-10-08 14:26:19 +02:00
Gabriel Ebner
be4d1ca79c
Merge pull request #140916 from andersk/lean 
lean: 3.32.1 → 3.33.0
 2021-10-08 10:37:22 +02:00
Anders Kaseorg
4ce09e0e06 lean: 3.32.1 → 3.33.0 
Signed-off-by: Anders Kaseorg <andersk@mit.edu>
 2021-10-07 18:54:06 -07:00
Justin Bedő
68f25d5a86
Merge pull request #140170 from marsam/r-hydra 
R: don't restrict hydraPlatforms
 2021-10-07 08:54:26 +11:00
R. RyanTM
a1e297d282 mavproxy: 1.8.43 -> 1.8.44 2021-10-06 00:35:56 +00:00
Bruno Bzeznik
fe36d93cea siesta: 4.1-b3 -> 4.1.5 2021-10-05 22:46:40 +02:00
figsoda
3109ff5765 treewide: avoid use of lib.optional with list in inputs 2021-10-04 13:02:42 -04:00
Sandro
87180d88f9
Merge pull request #140102 from r-ryantm/auto-update/MAVProxy 2021-10-03 19:20:09 +02:00
Alex Martens
5430af2013 dwfv: init at 0.4.1 2021-10-02 09:03:37 -07:00
Vladimir Korolev
72d4a1f13d openmodelica: v1.17.0 -> v1.18.0, add balodja to openmodelica maintainers 2021-10-02 12:39:57 +03:00
Mario Rodas
4662abd3b4 R: don't restrict hydraPlatforms 
The restriction of hydraPlatforms was added in [1: ef05fad51a], but
doesn't seem to be a real reason behind it. R is Free Software and it
take takes a few minutes to build so I believe it can be distributed by
Hydra.

1: 2014-05-04 ef05fad51a
   R: don't restrict meta.platforms to Linux; other architectures should build fine
 2021-10-01 04:20:00 +00:00
R. RyanTM
e7ad746486 mavproxy: 1.8.42 -> 1.8.43 2021-10-01 00:38:44 +00:00
Bobby Rong
8145828985
Merge pull request #134593 from r-ryantm/auto-update/star 
star: 2.7.8a -> 2.7.9a
 2021-09-30 22:39:05 +08:00
Austin Seipp
d474571392 symbiyosys: 2020.08.22 -> 2021.09.13 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2021-09-29 13:14:27 -05:00
Sandro
8f7fa26a78
Merge pull request #139309 from Baltoli/bump-z3 2021-09-29 15:00:38 +02:00
Timo Kaufmann
cb3342eec8
Merge pull request #139758 from collares/sage-threejs-path 
threejs-sage: install in expected location
 2021-09-28 20:05:18 +02:00
Mauricio Collares
a5a7c33e77 threejs-sage: install in expected location 
Co-authored-by: Timo Kaufmann <timokau@zoho.com>
 2021-09-28 19:06:48 +02:00
Sandro
5b5fb57aed
Merge pull request #139745 from Ma27/bump-stellarium 2021-09-28 14:12:02 +02:00
Maximilian Bosch
fbdf7d2206
stellarium: 0.21.1 -> 0.21.2 
ChangeLog: https://github.com/Stellarium/stellarium/releases/tag/v0.21.2
 2021-09-28 13:49:59 +02:00
Robert Schütz
54e1db2152
Merge pull request #138479 from dotlambda/proj-8.1.1 
proj: 7.2.1 -> 8.1.1
 2021-09-27 16:46:32 -07:00
Robert Schütz
98c8fc6fd0 gplates: 2.2.0 -> 2.3.0 2021-09-26 23:11:29 -07:00
Ryan Burns
4e1586c6ad
Merge pull request #139338 from r-burns/protobuf 
treewide: fixes for protobuf 3.18+
 2021-09-25 14:54:43 -07:00
Bruce Collie
3e213b8699 z3: 4.8.10 -> 4.8.12 2021-09-24 11:46:21 +01:00
R. RyanTM
5becb56f71
star: 2.7.8a -> 2.7.9a 2021-09-24 10:37:28 +08:00
Ryan Burns
40299257cc Merge branch 'master' into staging-next 2021-09-23 18:43:00 -07:00
Naïm Favier
b2391a51d2 coq: add desktop file for coqide 2021-09-23 14:39:50 +02:00
Sandro
9f5d7fa703
Merge pull request #136526 from smancill/shogun-remove-svmlight 
shogun: remove non-distributable SVMlight code
 2021-09-23 14:11:12 +02:00
Ryan Burns
813c400edc cntk: fix build with protobuf 3.18+ 2021-09-23 02:16:17 -07:00
Bobby Rong
c25465873c
Merge pull request #138022 from natsukium/blast/update 
blast: 2.11.0 -> 2.12.0
 2021-09-23 14:48:35 +08:00
Ryan Burns
e12802213e caffe: fix build with protobuf 3.18+ 2021-09-22 21:57:13 -07:00
github-actions[bot]
796a5df129
Merge master into staging-next 2021-09-23 00:01:50 +00:00
Sandro
1d180608da
Merge pull request #138968 from hjones2199/kstars355 2021-09-22 22:32:28 +02:00
Guillaume Girol
4bc83aaffa
Merge pull request #136489 from ehmry/nimPackages 
nimpackages / buildNimPackage
 2021-09-22 18:35:38 +00:00
Hunter Jones
3ba268b73d kstars: 3.5.4 -> 3.5.5 2021-09-22 11:35:38 -05:00
markuskowa
b4f1a1338f
Merge pull request #138512 from r-burns/csdp 
[staging-next] Revert "csdp: move gfortran to nativeBuildInputs"
 2021-09-20 12:18:40 +02:00
Alyssa Ross
e2bb7997c4
Merge remote-tracking branch 'nixpkgs/master' into staging-next 
Conflicts:
	nixos/doc/manual/release-notes/rl-2111.section.md
 2021-09-19 17:08:00 +00:00
Ryan Burns
b23afbb866 Revert "csdp: move gfortran to nativeBuildInputs" 
We are not using gfortran as a native binary; we are using its lib.

Fixes build on darwin.

This reverts commit eabbf45b60.
 2021-09-19 02:35:27 -07:00
Bobby Rong
0fd8cc3908
treewide: switch from pantheon.maintainers to lib.teams.pantheon 2021-09-18 23:07:00 +08:00
github-actions[bot]
263bdbdad4
Merge master into staging-next 2021-09-18 06:01:19 +00:00
figsoda
0e575a459e
Merge pull request #137974 from r-ryantm/auto-update/bowtie 
bowtie: 1.3.0 -> 1.3.1
 2021-09-17 22:52:43 -04:00
Sebastián Mancilla
e810fad47a shogun: remove non-distributable SVMlight code 
SVMlight uses a non-standard license [0] that doesn't allow distribution
without the author's permission:

> The software must not be modified and distributed without prior permission of the author.

So remove all code related to it when building the binary package.
Use upstream's own script to do it (which they use to create and
distribute their own Debian package), with a few fixes.

There is still the option of building from source with SVMlight enabled
with an override that sets the withSvmLight parameter.

If SVMlight is enabled set the license to unfree. Also fix the
deprecated gpl3 license to gpl3Plus.

[0]: https://github.com/shogun-toolbox/shogun/blob/shogun_6.1.4/doc/license/LICENSE_SVMlight.md
 2021-09-17 15:04:34 -03:00
github-actions[bot]
a21275cdae
Merge master into staging-next 2021-09-17 18:01:14 +00:00
figsoda
715d551a10
Merge pull request #136637 from L-as/alliance 
alliance: 5.1.1 -> unstable-2020-12-04
 2021-09-17 12:47:55 -04:00
Las Safin
33390f6bc7
alliance: 5.1.1 -> unstable-2021-09-15 2021-09-17 16:17:23 +00:00
github-actions[bot]
2ad7b248e6
Merge staging-next into staging 2021-09-17 00:02:15 +00:00
Robert Scott
c1dac4490e
Merge pull request #138061 from Stunkymonkey/switch-fetchFromGitLab 
quantum-espresso,postgresql11Packages.pg_ed25519: switch to fetchFromGitlab
 2021-09-16 23:53:23 +01:00
github-actions[bot]
85bd312fb6
Merge staging-next into staging 2021-09-16 12:02:04 +00:00
markuskowa
228e15e7cb
Merge pull request #138123 from markuskowa/fix-octopus 
octopus: add CPU optimization flags
 2021-09-16 13:25:47 +02:00
Markus Kowalewski
bd69f3d627
octopus: add CPU optimization flags 2021-09-16 12:53:47 +02:00
Bobby Rong
12d38c57c3
Merge pull request #134133 from Kranzes/auto-update/SPAdes 
SPAdes: 3.15.2 -> 3.15.3
 2021-09-16 17:09:24 +08:00
Bobby Rong
77f92d23c7
Merge pull request #137608 from lopsided98/qgroundcontrol-update 
qgroundcontrol: 4.1.3 -> 4.1.4
 2021-09-16 14:18:28 +08:00
Felix Buehler
64bac8e874 quantum-espresso: switch to fetchFromGitLab 2021-09-15 23:13:57 +02:00
github-actions[bot]
1c625bf844
Merge staging-next into staging 2021-09-15 18:01:59 +00:00
Dmitry Kalinkin
d8ed39b309
Merge pull request #135525 from veprbl/pr/open_memstream_fmemopen_darwin_fix 
Add implemetations of open_memstream/fmemopen to be used on BSDs
 2021-09-15 11:49:55 -04:00
Dmitry Kalinkin
84f408f206
Merge pull request #136016 from veprbl/pr/root_6_24_04 
root: 6.24.02 -> 6.24.06
 2021-09-15 11:35:07 -04:00
Tomoya Otabi
1e9bd43214 blast: 2.11.0 -> 2.12.0 2021-09-15 15:33:44 +00:00
github-actions[bot]
24a34e5706
Merge staging-next into staging 2021-09-15 12:01:34 +00:00
Michael Raskin
47eaf6727b
Merge pull request #137876 from r-ryantm/auto-update/opensmt 
opensmt: 2.1.0 -> 2.1.1
 2021-09-15 09:03:33 +00:00
R. RyanTM
7bf7c9b92b bowtie: 1.3.0 -> 1.3.1 2021-09-15 07:35:44 +00:00
github-actions[bot]
636ebe3a72
Merge staging-next into staging 2021-09-15 06:01:54 +00:00
Justin Bedő
9c4f65db4b
Merge pull request #137884 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.26.0 -> 2.26.2
 2021-09-15 04:59:06 +00:00
R. RyanTM
e676fdcb90 picard-tools: 2.26.0 -> 2.26.2 2021-09-14 19:53:25 +00:00
R. RyanTM
1c9cbe8a05 opensmt: 2.1.0 -> 2.1.1 2021-09-14 18:44:37 +00:00
github-actions[bot]
95f24a8a57
Merge staging-next into staging 2021-09-14 18:01:40 +00:00
R. RyanTM
504529d628 horizon-eda: 2.0.0 -> 2.1.0 2021-09-14 10:46:32 +00:00
github-actions[bot]
04e48fbe4f
Merge staging-next into staging 2021-09-13 18:01:51 +00:00
adisbladis
fcf5397793
Merge pull request #135905 from dukc/secondDmd2097 
D compiler update
 2021-09-13 11:36:55 -05:00
Ben Wolsieffer
03111112cc qgroundcontrol: 4.1.3 -> 4.1.4 2021-09-13 00:11:37 -04:00
github-actions[bot]
dfd1161f35
Merge staging-next into staging 2021-09-13 00:02:22 +00:00
Sandro
11e504567d
Merge pull request #137454 from r-ryantm/auto-update/MAVProxy 
mavproxy: 1.8.41 -> 1.8.42
 2021-09-13 00:26:51 +02:00
github-actions[bot]
fef6f602e6
Merge staging-next into staging 2021-09-12 18:01:50 +00:00
Daniël de Kok
6f2ce2a65e treewide: remove danieldk as maintainer from a set of packages 
I currently do not have much time to work on nixpkgs. Remove
myself as a maintainer from a bunch of packages to avoid that
people are waiting on me for a review.
 2021-09-12 14:42:12 +00:00
Sandro
83eef43893
Merge pull request #135906 from yl3dy/xoscope 
xoscope: 2.0 -> 2.3
 2021-09-12 16:15:41 +02:00
Sandro Jäckel
e4a49641ae
openems: fix eval 2021-09-12 14:45:44 +02:00
R. RyanTM
2464f7ae0a mavproxy: 1.8.41 -> 1.8.42 2021-09-12 00:36:50 +00:00
github-actions[bot]
d370d9ee99
Merge staging-next into staging 2021-09-11 18:01:51 +00:00
Sandro
22d08e62d9
Merge pull request #137382 from Xitian9/geogebra 2021-09-11 18:33:09 +02:00
Sandro
790559422e
Merge pull request #136823 from r-ryantm/auto-update/MAVProxy 2021-09-11 18:08:34 +02:00
Sandro
205c2ada66
Merge pull request #136967 from bzizou/obitools 2021-09-11 16:27:18 +02:00
Stephen Morgan
28b5133cce geogebra: 5-0-644-0 -> 5-0-662-0 2021-09-11 23:49:13 +10:00
github-actions[bot]
6188f2aeeb
Merge staging-next into staging 2021-09-11 06:01:28 +00:00
Guillaume Girol
1065a41d8d
Merge pull request #136369 from veprbl/pr/root5_gcc10_fix 
root5: fix for gcc10
 2021-09-10 19:54:29 +00:00
Hunter Jones
bc19f8dd1e kstars: 3.5.3 -> 3.5.4 2021-09-07 13:04:31 -05:00
Bruno Bzeznik
3bd1b0ed0d obitools3: 3.0.0-beta14 -> 3.0.1b11 2021-09-07 09:38:41 +02:00
R. RyanTM
a7277dd058 mavproxy: 1.8.40 -> 1.8.41 2021-09-06 00:37:54 +00:00
Emery Hemingway
323c503cba mosdepth: convert to buildNimPackage 2021-09-05 11:20:02 +02:00
Dmitry Kalinkin
0ec2acf51f
root: build with -Dimt=ON 2021-09-03 12:41:16 -04:00