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5889 Commits

Author SHA1 Message Date
github-actions[bot]
c62314becb
Merge staging-next into staging 2022-03-22 06:01:42 +00:00
Serge Bazanski
8171e0a24e magic-vlsi: 8.3.109 -> 8.3.277 2022-03-22 02:14:44 +01:00
Sandro
4348e36456
Merge pull request #164248 from Stunkymonkey/treewide-fetchFromGitHub-2 2022-03-22 02:13:45 +01:00
github-actions[bot]
03c279d7ea
Merge staging-next into staging 2022-03-22 00:02:58 +00:00
Jörg Thalheim
800d3e733c
Merge pull request #165100 from armeenm/remove-golly-beta 
golly-beta: remove
 2022-03-21 20:20:31 +00:00
github-actions[bot]
6ae26bb3c8
Merge staging-next into staging 2022-03-21 18:07:51 +00:00
Ryan Mulligan
0ecdc95822
Merge pull request #165002 from r-ryantm/auto-update/kstars 
kstars: 3.5.7 -> 3.5.8
 2022-03-21 10:02:16 -07:00
Armeen Mahdian
858e03cf1f golly-beta: remove 
Golly is more up to date
 2022-03-21 07:08:53 -05:00
Vladimír Čunát
a519740b4c
Merge branch 'staging-next' into staging 2022-03-21 11:57:43 +01:00
R. Ryantm
142a76c412 kstars: 3.5.7 -> 3.5.8 2022-03-20 17:43:56 +00:00
Gabriel Ebner
3aa72cc471
Merge pull request #157515 from jvanbruegge/isabelle-naproche 
isabelle: Enable and use naproche from nixpkgs
 2022-03-20 18:26:33 +01:00
Evils
dfb7d36e7a kicad-unstable: 2022-01-13 -> 2022-03-19 2022-03-20 16:32:32 +01:00
Evils
fc6f267e5d kicad: 6.0.2 -> 6.0.4 
6.0.3 was tagged but never released due to an issue
 2022-03-20 15:36:44 +01:00
Doron Behar
6f227f03cb qalculate-gtk: 4.0.0 -> 4.1.0 2022-03-20 16:04:47 +08:00
Bobby Rong
b3549ba290
Merge pull request #164837 from bobby285271/pantheon-eco 
various: remove elementary-icon-theme from buildInputs & vala 0.56 fixes
 2022-03-20 13:34:08 +08:00
Martin Weinelt
f4f3622cb1 Merge remote-tracking branch 'origin/staging-next' into staging 2022-03-20 00:00:32 +01:00
Bobby Rong
88aee703c2
various: remove elementary-icon-theme from buildInputs 
These apps don't hardcode their icon themes and the icon theme
is no longer picked up by wrapGAppsHook by default. User may
also able to choose to use icon themes of their choice so pulling
them to XDG_DATA_DIRS is mostly no use.
 2022-03-19 17:16:30 +08:00
7c6f434c
c8677c4da2
Merge pull request #164193 from NixOS/r-updates 
R 4.1.2 -> 4.1.3 and rPackages bump
 2022-03-18 17:27:53 +00:00
Ryan Mulligan
bfe3a6f08a
Merge pull request #164022 from r-ryantm/auto-update/jmol 
jmol: 14.32.30 -> 14.32.33
 2022-03-18 10:25:57 -07:00
Sandro
957075fd6d
Merge pull request #164375 from fedeinthemix/gaw-update 2022-03-18 17:58:40 +01:00
Gabriel Ebner
dccd0f76c3
Merge pull request #164717 from collares/lean-3.42.0 
lean: 3.41.0 -> 3.42.0
 2022-03-18 17:31:26 +01:00
Armeen Mahdian
6cfaf0a464 eggnog-mapper: 1.0.3 -> 2.1.7 
https://github.com/eggnogdb/eggnog-mapper/releases
 2022-03-18 10:26:47 -05:00
Mauricio Collares
897ba65b6f lean: 3.41.0 -> 3.42.0 2022-03-18 11:52:10 -03:00
github-actions[bot]
588298ee0a
Merge staging-next into staging 2022-03-18 12:01:57 +00:00
R. Ryantm
d055eda636 mavproxy: 1.8.46 -> 1.8.48 2022-03-18 11:17:17 +00:00
R. Ryantm
d29ff668b5 opensmt: 2.3.0 -> 2.3.1 2022-03-17 18:40:58 +00:00
tilcreator
73449ea799 inav-configurator: 3.0.2 -> 4.1.0 2022-03-17 17:50:49 +01:00
Felix Buehler
f8684d34e9 cntk: switch to fetchFromGitHub 2022-03-16 23:23:09 +01:00
github-actions[bot]
177bd4ed53
Merge staging-next into staging 2022-03-16 18:01:43 +00:00
Bobby Rong
2079219a72
Merge pull request #164162 from jdupak/master 
QtRVSim: 0.9.1 -> 0.9.2
 2022-03-16 21:32:22 +08:00
Federico Beffa
3076eab196 gaw: 20200922 -> 20220315 2022-03-16 08:01:53 +01:00
zowoq
6431086967 Merge remote-tracking branch 'origin/staging-next' into staging 
Conflicts:
	pkgs/development/python-modules/symengine/default.nix
 2022-03-16 16:03:43 +10:00
Morgan Jones
98a951c509 klee: build with klee-uclibc 
This ends up enabling more of the KLEE test suite, so apply patches to
fix those too.
 2022-03-15 19:21:00 -06:00
Ryan Mulligan
2a0d98d319
Merge pull request #163638 from r-ryantm/auto-update/siril 
siril: 0.99.10.1 -> 1.0.0
 2022-03-15 14:56:47 -07:00
Ryan Mulligan
7e1cc45b66
Merge pull request #162443 from r-ryantm/auto-update/phd2 
phd2: 2.6.10 -> 2.6.11
 2022-03-15 14:56:29 -07:00
Martin Weinelt
8d18f29b60
Merge pull request #161366 from NixOS/staging-next 
Staging next 2022-02-22
 2022-03-15 22:31:01 +01:00
Ben Siraphob
cc7b9eac78
Merge pull request #164195 from siraben/nuXmv-init 2022-03-15 18:53:13 +00:00
Ben Siraphob
b39792d141
nuXmv: init at 2.0.0 2022-03-15 13:50:58 -05:00
Vladimír Čunát
b61852cd94
Merge branch 'master' into staging-next 2022-03-15 18:08:32 +01:00
Rasmus Thomsen
69895c6248
bada-bib: 0.5.1 -> 0.6.0 2022-03-15 12:50:26 +01:00
Jakub Dupak
b72a99d718 QtRVSim: 0.9.1 -> 0.9.2 2022-03-14 22:04:17 +02:00
Alyssa Ross
d7e181ff83
Merge remote-tracking branch 'nixpkgs/staging-next' into staging 
Conflicts:
	pkgs/development/compilers/ocaml/4.12.nix
	pkgs/development/python-modules/oci/default.nix
	pkgs/tools/admin/bubblewrap/default.nix
 2022-03-14 12:33:16 +00:00
github-actions[bot]
0ed928e4ab
Merge master into staging-next 2022-03-14 12:01:26 +00:00
Mauricio Collares
5240cbc0d8 sage: adapt tachyon interface for 0.99.3 2022-03-13 16:53:22 -03:00
R. Ryantm
6d61669d69 jmol: 14.32.30 -> 14.32.33 2022-03-13 16:20:57 +00:00
github-actions[bot]
1630ab9b47
Merge master into staging-next 2022-03-13 06:05:11 +00:00
Jakub Dupak
d09489e5f1
QtRvSim: init at 0.9.1 (#163128) 
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2022-03-13 03:08:40 +01:00
github-actions[bot]
6f7d104254
Merge master into staging-next 2022-03-13 00:02:14 +00:00
Sandro
529b89d755
Merge pull request #161434 from collares/lean-3.40.0 2022-03-12 23:43:20 +01:00
Sandro
8057801ad7
Merge pull request #163849 from fedeinthemix/add-xschem-2 2022-03-12 22:32:08 +01:00
R. Ryantm
29d7a27d9f opensmt: 2.2.0 -> 2.3.0 2022-03-12 17:44:51 +00:00
Federico Beffa
5d702c6b23 gaw: init at version 20200922 
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2022-03-12 17:50:10 +01:00
Federico Beffa
a40de4b146 xschem: init at version 3.0.0 
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2022-03-12 17:49:48 +01:00
github-actions[bot]
a9a2d9475d
Merge staging-next into staging 2022-03-11 18:01:59 +00:00
github-actions[bot]
7573d7fe79
Merge master into staging-next 2022-03-11 18:01:20 +00:00
Renaud
28721c55c5
Merge pull request #160342 from Luflosi/update/yosys 
yosys: 0.12+54 -> 0.15
 2022-03-11 18:15:51 +01:00
Mauricio Collares
bab25a7a3a lean: 3.40.0 -> 3.41.0 2022-03-11 11:40:27 -03:00
R. Ryantm
f764458ed2 siril: 0.99.10.1 -> 1.0.0 2022-03-10 22:40:03 +00:00
Justin Bedo
3739a7819d
R: 4.1.2 -> 4.1.3 2022-03-10 22:31:13 +11:00
github-actions[bot]
f6b4a4048a
Merge staging-next into staging 2022-03-09 12:01:59 +00:00
github-actions[bot]
201cc2f89b
Merge master into staging-next 2022-03-09 00:02:05 +00:00
Luflosi
0e4d199cbd
abc-verifier: 2021.11.12 -> 2022.03.04 2022-03-08 18:28:13 +01:00
R. Ryantm
e0c3da7946 jmol: 14.32.28 -> 14.32.30 2022-03-08 16:34:40 +00:00
github-actions[bot]
69e1d85d54
Merge staging-next into staging 2022-03-06 18:01:46 +00:00
github-actions[bot]
68a45fb1f2
Merge master into staging-next 2022-03-06 18:01:10 +00:00
R. Ryantm
f3288c60f0 marvin: 22.3.0 -> 22.7.0 2022-03-06 07:45:27 +00:00
github-actions[bot]
6933fb31ab
Merge staging-next into staging 2022-03-06 06:01:40 +00:00
github-actions[bot]
3f8e60728f
Merge master into staging-next 2022-03-06 06:01:06 +00:00
Bobby Rong
cf7e4cac05
Merge pull request #161194 from wucke13/mission-planner 
mission-planner: 1.3.74 -> 1.3.76
 2022-03-06 13:28:50 +08:00
github-actions[bot]
90f82a2f9a
Merge staging-next into staging 2022-03-06 00:02:44 +00:00
github-actions[bot]
9dd2a8b600
Merge master into staging-next 2022-03-06 00:02:10 +00:00
Dmitry Kalinkin
149d68268d
root: fix ROOTConfig.cmake.in patching 2022-03-04 21:04:19 -05:00
github-actions[bot]
a072933f52
Merge staging-next into staging 2022-03-05 00:02:27 +00:00
github-actions[bot]
d4bfb57f40
Merge master into staging-next 2022-03-05 00:01:54 +00:00
7c6f434c
d5058ae9e5
Merge pull request #162688 from r-ryantm/auto-update/jmol 
jmol: 14.32.24 -> 14.32.28
 2022-03-04 20:43:10 +00:00
github-actions[bot]
d3cf053b7f
Merge staging-next into staging 2022-03-04 18:01:54 +00:00
github-actions[bot]
437813752b
Merge master into staging-next 2022-03-04 18:01:19 +00:00
Bruno Bzeznik
7d62054650 angsd: init at 0.937 2022-03-04 09:17:35 -06:00
Alyssa Ross
c010a19a56
Merge remote-tracking branch 'nixpkgs/staging-next' into staging 
Conflicts:
	pkgs/development/python-modules/hypothesmith/default.nix
 2022-03-04 14:53:05 +00:00
github-actions[bot]
fc22d0d5e2
Merge master into staging-next 2022-03-04 12:01:33 +00:00
Matthew Wakefield
e85b65f986
minimap2: enable aarch64 builds (#161169) 
Co-authored-by: Bobby Rong <rjl931189261@126.com>
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2022-03-04 12:27:29 +01:00
R. Ryantm
f5258a7d12 jmol: 14.32.24 -> 14.32.28 2022-03-03 23:44:55 +00:00
github-actions[bot]
18a9a18e2b
Merge staging-next into staging 2022-03-02 12:10:55 +00:00
github-actions[bot]
12423e2e92
Merge master into staging-next 2022-03-02 12:05:47 +00:00
R. Ryantm
04ee1b8975 phd2: 2.6.10 -> 2.6.11 2022-03-02 03:13:28 +00:00
Justin Bedo
89eff15f31
last: 1260 -> 1268 2022-03-02 13:35:56 +11:00
Jan van Brügge
c1ef185bdb
isabelle: Use naproche from nixpkgs 2022-03-01 13:43:38 +01:00
Jan van Brügge
2b71e68503
naproche: init at 0.1.0.0 2022-03-01 13:43:37 +01:00
github-actions[bot]
fbd1c5b484
Merge staging-next into staging 2022-03-01 12:11:43 +00:00
github-actions[bot]
4ae3f9a06c
Merge master into staging-next 2022-03-01 12:05:54 +00:00
Gabriel Ebner
8934eb7c91
Merge pull request #157843 from jvanbruegge/isabelle_setup 
isabelle: Rebuild isabelle_setup.jar
 2022-03-01 12:11:25 +01:00
zowoq
64a89aac86 Merge staging-next into staging 
Conflicts:
	pkgs/development/libraries/sqlite/default.nix
 2022-03-01 16:20:52 +10:00
R. Ryantm
de0ff65232 cwltool: 3.1.20220221074232 -> 3.1.20220224085855 2022-03-01 03:46:50 +00:00
grnnja
b6c7526d3a
jflap: init at 7.1 2022-02-28 17:12:08 -08:00
github-actions[bot]
bfb0bc0461
Merge master into staging-next 2022-02-28 18:05:41 +00:00
Sandro
b7ec0afb59
Merge pull request #162205 from Stunkymonkey/treewide-vVersion 2022-02-28 14:26:16 +01:00
Felix Buehler
1573dbdcd0 treewide: fix versions starting with 'v' 2022-02-28 13:05:18 +01:00
github-actions[bot]
f831b62376
Merge staging-next into staging 2022-02-28 12:01:47 +00:00
github-actions[bot]
e71c1249e8
Merge master into staging-next 2022-02-28 12:01:10 +00:00
Felix Buehler
fe7678ca81 raxml-mpi: remove appendToName to have a consistent package name for repology 2022-02-28 12:46:15 +01:00
Felix Buehler
13dca33cdc neuron-mpi: remove appendToName to have a consistent package name for repology 2022-02-28 12:46:15 +01:00
Bobby Rong
f35d1b8568
Merge pull request #160332 from florentc/tlaps 
tlaps: 1.4.3 -> 1.4.5
 2022-02-28 16:33:42 +08:00
Jonathan Ringer
3af9faf36d
Merge pull request #133431 from Ma27/glibc-2.34 
glibc: 2.33-108 -> 2.34-115
 2022-02-27 18:07:11 -08:00
github-actions[bot]
6787116890
Merge master into staging-next 2022-02-28 00:02:07 +00:00
Guillaume Girol
b9ecdae495
Merge pull request #161344 from ulrikstrid/ulrikstrid/tree-wide-native-inputs 
ocamlPackages tree-wide: Move buildInputs that should be nativeBuildInputs
 2022-02-27 19:49:07 +00:00
7c6f434c
da576d8a4a
Merge pull request #161876 from FRidh/sage-python 
Sage: make it possible to extend the Python runtime environment with additional packages
 2022-02-27 19:02:59 +00:00
Maximilian Bosch
52bba1de8a
clingcon: fix build w/glibc-2.34 
Failing Hydra build: https://hydra.nixos.org/build/163641612
 2022-02-27 10:26:56 +01:00
AndersonTorres
ed2b1b4b90 Merge branch 'master' into staging-next 2022-02-26 21:04:25 -03:00
Vincent Laporte
68e4b639a3
Merge pull request #161111 from ulrikstrid/ulrikstrid/coq-move-dune-to-native 
coq: Move dune, ocaml and findlib to nativeBuildInputs
 2022-02-26 08:54:53 +01:00
R. Ryantm
21a1125f37 gmsh: 4.9.4 -> 4.9.5 2022-02-25 14:21:11 -08:00
K900
cb2cfba6f7 treewide: switch all desktop file generators to new API 
Notably:
- remove explicit arguments that match the defaults
- convert everything to the right Nix types
 2022-02-25 13:40:38 -08:00
Frederik Rietdijk
330d9344d2 sage: make it possible not to rebuild sage-tests 
Requiring sage-tests as build input just so it gets build is a bit
unfortunatey but understandable. This commit introduces an option to not
add sage-tests as a dependency. This is preferred in case e.g. Python
packages are added to the environment.
 2022-02-25 21:27:14 +01:00
Frederik Rietdijk
7442533bf1 sage: support adding extra Python packages to environment 
mysage = sage.override { extraPythonPackages = ps: with ps; [ dask ]; };

Note that the sage-tests are executed again as well, which is not very nice.
 2022-02-25 21:18:23 +01:00
R. Ryantm
1e7c64aae1 bcftools: 1.14 -> 1.15 2022-02-25 11:12:05 -08:00
markuskowa
49186d631f
Merge pull request #161635 from r-ryantm/auto-update/jmol 
jmol: 14.32.21 -> 14.32.24
 2022-02-25 13:42:31 +01:00
Ulrik Strid
7e20e9039e coqPackages: tree-wide move packages to nativeBuildInputs and add strictDeps = true 
Co-authored-by: Vincent Laporte <vbgl@users.noreply.github.com>
 2022-02-25 07:54:17 +01:00
Vincent Laporte
056c34167d why3: 1.4.0 → 1.4.1 2022-02-25 06:00:09 +01:00
Justin Bedő
6b477d556d
Merge pull request #161695 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.26.10 -> 2.26.11
 2022-02-25 08:27:23 +11:00
R. Ryantm
d6a24fc108 cwltool: 3.1.20220217222804 -> 3.1.20220221074232 2022-02-24 15:52:49 -05:00
R. Ryantm
ce9d28cc49 picard-tools: 2.26.10 -> 2.26.11 2022-02-24 17:34:18 +00:00
Ulrik Strid
48df7cdbba coq: Move dune to nativeBuildInputs and add ocaml, findlib and menhir 2022-02-24 14:39:45 +01:00
Ulrik Strid
a13cdfe520 ocamlPackages tree-wide: Move buildInputs that should be nativeBuildInputs 
To keep this for the future we also strictDeps where possible, including for janePackages, topkg, oasis and ocamlbuild.
This makes some closures significantly smaller and makes cross compilation easier
 2022-02-24 14:39:27 +01:00
R. Ryantm
1b8518cadd jmol: 14.32.21 -> 14.32.24 2022-02-24 08:42:12 +00:00
github-actions[bot]
cd6011bf17
Merge master into staging-next 2022-02-24 00:02:03 +00:00
Renaud
65ecaa9903
Merge pull request #150078 from r-ryantm/auto-update/gurobi 
gurobi: 9.1.2 -> 9.5.0
 2022-02-23 22:08:43 +01:00
github-actions[bot]
37f89e2837
Merge master into staging-next 2022-02-23 18:01:10 +00:00
Markus Kowalewski
469ae42107
gromacs: 2021.5 -> 2022 2022-02-23 14:47:26 +01:00
Renaud
a723c88d4e
Merge pull request #159967 from r-ryantm/auto-update/workcraft 
workcraft: 3.3.5 -> 3.3.6
 2022-02-23 13:30:39 +01:00
github-actions[bot]
10c4b97b44
Merge master into staging-next 2022-02-23 12:01:11 +00:00
Renaud
359d63179e
Merge pull request #160360 from r-ryantm/auto-update/qalculate-gtk 
qalculate-gtk: 3.22.0 -> 4.0.0
 2022-02-23 08:30:49 +01:00
Mauricio Collares
4ba9b2d198 lean: 3.39.2 -> 3.40.0 2022-02-22 21:02:08 -03:00
github-actions[bot]
ac0e0313b5
Merge staging-next into staging 2022-02-22 06:01:53 +00:00
Bobby Rong
93883402a4
Merge pull request #160594 from Cogitri/bada-bib 
bada-bib: 0.4.1 -> 0.5.1
 2022-02-22 12:10:40 +08:00
github-actions[bot]
f8210665fc
Merge staging-next into staging 2022-02-22 00:02:51 +00:00
Mauricio Collares
586b897693 sage: update test expectations for stack_data 0.2.0 2022-02-21 14:49:16 -08:00
Wanja Zaeske
2d67cc2bf6 removing maintainer wucke13 from some packages 2022-02-21 22:58:18 +01:00
ajs124
55bf481a21
Merge pull request #159212 from helsinki-systems/init/febio-studio 
febio-studio: init at 1.6.1
 2022-02-21 17:24:33 +01:00
Scriptkiddi
4e60a4823b febio-studio: init at 1.6.1 2022-02-21 16:43:36 +01:00
Rasmus Thomsen
87c1d9f92c
bada-bib: 0.4.1 -> 0.5.1 2022-02-21 16:33:50 +01:00
Wanja Zaeske
58d5eb70e2 mission-planner: 1.3.74 -> 1.3.76 2022-02-21 09:51:16 +01:00
R. Ryantm
c35aa0a0f3 cwltool: 3.1.20220217190813 -> 3.1.20220217222804 2022-02-21 01:31:33 -05:00
markuskowa
48ab0d0233
Merge pull request #160924 from qbg/submit/mathematica-13.0.1 
mathematica: 13.0.0 -> 13.0.1
 2022-02-20 10:23:22 +01:00
R. RyanTM
286ecff9e0
getdp: 3.3.0 -> 3.4.0 
(#150127)
 2022-02-19 22:41:33 +01:00
Mario Rodas
94723d21f9
Merge pull request #159540 from r-ryantm/auto-update/marvin 
marvin: 21.20.0 -> 22.3.0
 2022-02-19 15:59:08 -05:00
qbg
f4f52d9d70 mathematica: 13.0.0 -> 13.0.1 
https://wolfram.com/mathematica/quick-revision-history.html#v130
 2022-02-19 11:26:53 -06:00
Millian Poquet
bc2604732e simgrid: mark as broken on darwin 2022-02-19 10:05:17 +01:00
Millian Poquet
3f804f68bc simgrid: 3.28 -> 3.30 + python + clean 
- use latest SimGrid release
- enable the python binding (in new output "python")
- reviews from PR 141040 have been applied
 2022-02-19 10:05:12 +01:00
Ulrik Strid
4150bf02b5 coq: allow static linking by moving wrapGAppsHook to nativeBuildInputs 
Co-authored-by: Vincent Laporte <vbgl@users.noreply.github.com>
 2022-02-18 15:17:04 +01:00
Mario Rodas
947c98310c
Merge pull request #160545 from collares/lean-3.39.2 
lean: 3.39.1 -> 3.39.2
 2022-02-18 06:26:51 -05:00
R. Ryantm
b715fcd9d9 cwltool: 3.1.20220210171524 -> 3.1.20220217190813 2022-02-18 00:36:37 -05:00