figsoda
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8014b08ee0
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treewide/applications: use top-level fetchPypi
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2023-05-25 10:51:30 -04:00 |
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Weijia Wang
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6d71b5d6de
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iqtree: set platforms
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2023-05-22 11:14:57 +03:00 |
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R. Ryantm
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b36979ec74
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iqtree: 2.2.0.4 -> 2.2.2.4
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2023-05-22 04:48:16 +00:00 |
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Weijia Wang
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7c6ca2791b
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Merge pull request #231635 from natsukium/bwa/build-on-aarch64
bwa: 0.7.17 -> unstable-2022-09-23
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2023-05-18 01:10:14 +03:00 |
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Nick Cao
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906c7dd78c
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Merge pull request #231975 from jbedo/fastp
fastp: 0.23.2 -> 0.23.3
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2023-05-15 05:11:28 -06:00 |
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natsukium
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04dd7f41e7
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bwa: add runHook
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2023-05-15 16:13:49 +09:00 |
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natsukium
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c85dced23e
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bwa: update license
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2023-05-15 16:13:49 +09:00 |
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natsukium
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01ddcaa879
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bwa: 0.7.17 -> unstable-2022-09-23
Diff: https://github.com/lh3/bwa/compare/v0.7.17...139f68fc4c3747813783a488aef2adc86626b01b
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2023-05-15 16:13:45 +09:00 |
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Ryan Lahfa
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308ee09f2f
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Merge pull request #231598 from natsukium/truvari/disable-tests-darwin
truvari: disable some tests on darwin
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2023-05-15 09:09:09 +02:00 |
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Justin Bedo
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60c69da248
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fastp: 0.23.2 -> 0.23.3
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2023-05-15 15:03:24 +10:00 |
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natsukium
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7edb72db10
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truvari: add patches to fix truvari anno
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2023-05-15 10:01:38 +09:00 |
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Ben Booth
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fed8eeba5c
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jbrowse: init at 2.5.0
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2023-05-12 11:24:26 -07:00 |
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Justin Bedo
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c7a6773f8e
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subread: 2.0.5 -> 2.0.6
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2023-05-10 22:30:35 +10:00 |
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Alexis Praga
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e027a5d836
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kent: package headers too.
This is needed for perlPackages.BioBigFile.
Removing NIX_BUILD_TOP.
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2023-05-06 19:48:14 +02:00 |
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R. Ryantm
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be4b60bf4f
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minimap2: 2.25 -> 2.26
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2023-05-03 19:38:48 +00:00 |
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Ben Darwin
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cf573698b1
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ants: 2.4.3 -> 2.4.4
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2023-05-02 12:29:21 -04:00 |
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R. Ryantm
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54a5899734
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minimap2: 2.24 -> 2.25
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2023-04-29 21:45:58 +00:00 |
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R. Ryantm
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395db2896e
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bedtools: 2.30.0 -> 2.31.0
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2023-04-29 03:05:55 +00:00 |
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natsukium
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8d40a0ecaa
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bedops: fix build on darwin
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2023-04-24 22:11:47 +09:00 |
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Nick Cao
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ab7c128e3c
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Merge pull request #227207 from natsukium/kent/update
kent: 404 -> 446
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2023-04-24 10:03:16 +08:00 |
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Sandro
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9bc9cfe51d
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Merge pull request #222660 from natsukium/hh-suite/init
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2023-04-23 23:42:38 +02:00 |
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Nick Cao
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99c4e7b895
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Merge pull request #227170 from jbedo/subread
subread: 2.0.4 -> 2.0.5
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2023-04-22 11:05:37 +08:00 |
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Robert Schütz
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2362848adf
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truvari: add natsukium to maintainers
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2023-04-21 13:43:26 -07:00 |
|
Robert Schütz
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ea468d9691
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truvari: 2.1.1 -> 4.0.0
Diff: https://github.com/spiralgenetics/truvari/compare/v2.1.1...v4.0.0
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2023-04-21 13:43:26 -07:00 |
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natsukium
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23205d28d2
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kent: add missing information to the meta
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2023-04-20 16:06:09 +09:00 |
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natsukium
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5b62152599
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kent: add runHooks
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2023-04-20 16:06:08 +09:00 |
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natsukium
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1e68ff3ee9
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kent: 404 -> 446
https://github.com/ucscGenomeBrowser/kent/compare/v404_base...v446_base
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2023-04-20 16:05:44 +09:00 |
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Justin Bedo
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718170ed41
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subread: 2.0.4 -> 2.0.5
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2023-04-20 10:25:20 +10:00 |
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natsukium
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e201b1556f
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tandem-aligner: add changelog to meta
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2023-04-19 21:23:21 +09:00 |
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natsukium
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14d7a73714
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tandem-aligner: unstable-2022-09-17 -> 0.1
https://github.com/seryrzu/tandem_aligner/releases/tag/v0.1
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2023-04-19 21:22:18 +09:00 |
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natsukium
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a272606614
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hh-suite: init at 3.3.0
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2023-04-19 10:32:35 +09:00 |
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Artturi
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9a1f5d4248
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Merge pull request #226889 from Artturin/fixlints2
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2023-04-18 21:52:21 +03:00 |
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Artturin
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eac28f38d6
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treewide: fix lints
Arg to lib.optional is a list
build time tool in buildInputs
*Flags not a list
https://github.com/nix-community/nixpkgs-lint
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2023-04-18 20:20:56 +03:00 |
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Sandro
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555daa9d33
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Merge pull request #221957 from natsukium/dssp/update
dssp: 4.0.5 -> 4.2.2.1
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2023-04-18 16:34:17 +02:00 |
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natsukium
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62943901dd
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dssp: 4.0.5 -> 4.2.2.1
https://github.com/PDB-REDO/dssp/compare/v4.0.5...v4.2.2.1
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2023-04-14 11:35:48 +09:00 |
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Nick Cao
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2833fc3981
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Merge pull request #225841 from natsukium/mafft/update
mafft: 7.515 -> 7.520
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2023-04-13 09:15:12 +08:00 |
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Robert Scott
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2107f7de60
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Merge pull request #225865 from bzizou/samtools
samtools: 1.13 -> 1.17
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2023-04-13 00:10:42 +01:00 |
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Bruno Bzeznik
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d69d242b7b
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Samtools: 1.13 -> 1.17
Changelogs:
- https://github.com/samtools/samtools/releases/tag/1.14
- https://github.com/samtools/samtools/releases/tag/1.15
- https://github.com/samtools/samtools/releases/tag/1.15.1
- https://github.com/samtools/samtools/releases/tag/1.16
- https://github.com/samtools/samtools/releases/tag/1.16.1
- https://github.com/samtools/samtools/releases/tag/1.17
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2023-04-12 12:00:25 +02:00 |
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natsukium
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f962206f94
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mafft: 7.515 -> 7.520
https://gitlab.com/sysimm/mafft/-/tags/v7.520
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2023-04-12 13:28:24 +09:00 |
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R. Ryantm
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8fcdc3f62c
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varscan: 2.4.5 -> 2.4.6
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2023-04-05 14:55:31 +00:00 |
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Weijia Wang
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150dcd7ce7
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Merge pull request #224345 from natsukium/blast/darwin
blast-bin: init at 2.13.0
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2023-04-03 09:59:08 +03:00 |
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natsukium
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cddb4a24ba
|
blast-bin: init at 2.13.0
|
2023-04-03 12:39:17 +09:00 |
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Justin Bedo
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e739dc5088
|
last: 1447 -> 1453
|
2023-04-03 08:38:27 +10:00 |
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github-actions[bot]
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cead7e3e73
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Merge master into staging-next
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2023-03-25 00:02:20 +00:00 |
|
Weijia Wang
|
2ce97f2bf9
|
Merge pull request #222464 from r-ryantm/auto-update/diamond
diamond: 2.1.5 -> 2.1.6
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2023-03-24 20:56:17 +02:00 |
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github-actions[bot]
|
0537539006
|
Merge master into staging-next
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2023-03-22 12:01:22 +00:00 |
|
Nick Cao
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6c4095e7af
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Merge pull request #222331 from r-ryantm/auto-update/seqkit
seqkit: 2.3.1 -> 2.4.0
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2023-03-22 16:08:39 +08:00 |
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R. Ryantm
|
4c2324cf14
|
diamond: 2.1.5 -> 2.1.6
|
2023-03-22 03:09:40 +00:00 |
|
R. Ryantm
|
a6f33bd62f
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seqkit: 2.3.1 -> 2.4.0
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2023-03-21 10:45:22 +00:00 |
|
Martin Weinelt
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9959ec97f8
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Merge remote-tracking branch 'origin/master' into staging-next
Conflicts:
- pkgs/development/python-modules/wxPython/4.0.nix
- pkgs/development/python-modules/wxPython/4.1.nix
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2023-03-20 15:07:36 +01:00 |
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