Pol Dellaiera
55b00aa1f7
ants: update postInstall attribute
2023-09-02 23:09:28 +02:00
Pol Dellaiera
ad1e8a5b43
ants: update meta attributes
2023-09-02 23:08:44 +02:00
Pol Dellaiera
d04a1a598e
ants: use finalAttrs pattern
2023-09-02 22:18:19 +02:00
Pol Dellaiera
35145f9df0
ants: reformat file using nixpkgs-fmt
2023-09-02 22:17:19 +02:00
R. Ryantm
875e737bfa
ants: 2.4.4 -> 2.5.0
2023-09-02 11:57:30 +00:00
Justin Bedő
f25f30b17a
Merge pull request #251304 from r-ryantm/auto-update/sambamba
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sambamba: 1.0.0 -> 1.0.1
2023-09-01 15:30:29 +10:00
github-actions[bot]
e79f8fd118
Merge master into staging-next
2023-08-25 18:00:58 +00:00
R. Ryantm
e1b695a96f
iqtree: 2.2.2.6 -> 2.2.2.7
2023-08-25 12:25:13 +00:00
R. Ryantm
d564dfa4d0
sambamba: 1.0.0 -> 1.0.1
2023-08-25 06:20:00 +00:00
github-actions[bot]
a451dcf514
Merge master into staging-next
2023-08-24 06:01:14 +00:00
OTABI Tomoya
21943b1829
Merge pull request #248172 from alxsimon/bwa
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bwa-mem2: init at version 2.2.1
2023-08-24 09:28:34 +09:00
Alexis Simon
556dac0725
bwa-mem2: init at version 2.2.1
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Co-authored-by: OTABI Tomoya <tomoya.otabi@gmail.com>
2023-08-23 15:02:06 -07:00
github-actions[bot]
56f5b9fafc
Merge staging-next into staging
2023-08-21 12:01:35 +00:00
OTABI Tomoya
325b09c1b5
Merge pull request #249878 from jbedo/last
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last: 1460 -> 1471
2023-08-21 16:09:10 +09:00
Emery Hemingway
ed353dc721
mosdepth: build with Nim-2
2023-08-21 07:32:46 +01:00
Emery Hemingway
9025a583b1
nimPackages.hts: 0.3.4 -> 0.3.23, rename from hts-nim
2023-08-21 07:32:46 +01:00
github-actions[bot]
9145b3fd81
Merge staging-next into staging
2023-08-19 18:01:22 +00:00
Justin Bedo
8d9f56ac2d
last: 1460 -> 1471
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Diff: https://gitlab.com/mcfrith/last/-/compare/refs/tags/1460...1471
2023-08-18 14:11:53 +10:00
natsukium
5462f67cc8
bamtools: init at 2.5.2
2023-08-18 00:17:15 +09:00
Pol Dellaiera
3eb7f7a63b
Merge pull request #248683 from oxij/tree/source-root-continues-3
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treewide: cleanup `sourceRoot` and `setSourceRoot` usage
2023-08-15 05:53:52 +02:00
Jan Malakhovski
d098c821d6
treewide: remove unneeded dots and slashes in sourceRoots
2023-08-12 08:29:56 +00:00
Theodore Ni
851d2f6b95
macs2: 2.2.8 -> 2.2.9.1
2023-08-11 14:45:45 -07:00
R. Ryantm
6d530a6389
seqkit: 2.5.0 -> 2.5.1
2023-08-10 04:42:38 +00:00
R. Ryantm
a303664816
samtools: 1.17 -> 1.18
2023-08-07 01:22:06 +00:00
Mario Rodas
156a49aa49
Merge pull request #236810 from natsukium/cmtk/update
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cmtk: 3.3.1 -> 3.3.2; fix darwin build
2023-08-06 11:51:18 -05:00
Weijia Wang
5c9ba9e55c
Merge pull request #246863 from r-ryantm/auto-update/picard-tools
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picard-tools: 3.0.0 -> 3.1.0
2023-08-04 21:17:27 +02:00
Jan Malakhovski
5852f26bdc
treewide: noop: refer to src.name or similar in sourceRoot where appropriate, part 1: trivial cases
2023-08-03 16:32:03 +00:00
R. Ryantm
29a0a9e29a
picard-tools: 3.0.0 -> 3.1.0
2023-08-02 22:03:03 +00:00
Weijia Wang
66aedfd010
Merge pull request #246815 from r-ryantm/auto-update/veryfasttree
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veryfasttree: 4.0.1 -> 4.0.2
2023-08-02 21:56:37 +02:00
Weijia Wang
e4e313aeff
Merge pull request #246485 from r-ryantm/auto-update/bcftools
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bcftools: 1.17 -> 1.18
2023-08-02 19:51:47 +02:00
Pol Dellaiera
9a772d7658
veryfasttree: use finalAttrs pattern
2023-08-02 18:51:11 +02:00
R. Ryantm
1fd16883d4
veryfasttree: 4.0.1 -> 4.0.2
2023-08-02 16:13:45 +00:00
Weijia Wang
23332e13fe
Merge pull request #243407 from natsukium/paml/update
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paml: 4.9j -> 4.10.7
2023-08-01 22:09:44 +02:00
R. Ryantm
487c6ac2bd
bcftools: 1.17 -> 1.18
2023-08-01 03:38:31 +00:00
R. Ryantm
40b736f0e8
last: 1456 -> 1460
2023-07-25 04:34:13 +00:00
github-actions[bot]
449a683b10
Merge master into staging-next
2023-07-24 00:02:26 +00:00
natsukium
e54f06de69
dssp: 4.3.1 -> 4.4.2
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Diff: https://github.com/PDB-REDO/dssp/compare/refs/tags/v4.3.1...v4.4.2
Changelog: https://github.com/PDB-REDO/libcifpp/releases/tag/refs/tags/v4.4.2
2023-07-23 21:24:23 +09:00
Tobias Mayer
ba2ce6e73b
various packages: pin boost179
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Taken from PR #244831 and vcunat amended the miopen override.
2023-07-22 16:54:22 +02:00
R. Ryantm
7a9d01d44c
seqkit: 2.4.0 -> 2.5.0
2023-07-17 11:15:14 +00:00
natsukium
d2c506948b
paml: refactor
2023-07-14 15:08:14 +09:00
natsukium
f6e2b68122
paml: 4.9j -> 4.10.7
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Diff: d59d538939https://github.com/abacus-gene/paml/releases/tag/4.10.7
2023-07-14 15:08:08 +09:00
natsukium
7cec88e50f
delly: enable openmp
2023-07-14 00:20:20 +09:00
natsukium
ae95c0d5a5
delly: refactor
2023-07-14 00:18:27 +09:00
natsukium
61be2ca18a
delly: enable darwin support
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- add passthru.tests
2023-07-13 23:54:39 +09:00
natsukium
e7c8cbc2b1
cmtk: fix format
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- use finalAttrs instead of rec
- fix license
- remove trailing space from description
2023-07-11 17:50:47 +09:00
natsukium
7014b723d9
cmtk: enable some compile options
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- use system zlib
- enabled bzip2
- enabled fftw
- enabled openmp for clang
- still disabled Grand Central Dispatch for linux because of build failure
- still disabled CUDA because of build failure
- still disabled mxml because of build failure
- still disabled lzma because of lack of lzmadec.h
- still disabled dcmtk because of build failure
2023-07-11 17:50:47 +09:00
natsukium
6bf04fc9c9
cmtk: fix darwin build
2023-07-11 17:50:43 +09:00
R. Ryantm
b5e04f0bc7
kallisto: 0.48.0 -> 0.50.0
2023-07-09 17:19:43 +00:00
Weijia Wang
6d506a9d51
Merge pull request #242302 from r-ryantm/auto-update/nest-mpi
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nest-mpi: 3.4 -> 3.5
2023-07-09 12:21:22 +03:00
R. Ryantm
ead7b7800d
nest-mpi: 3.4 -> 3.5
2023-07-08 16:03:30 +00:00
