Bouke van der Bijl
081eb4d889
openmvg: set target architecture to 'generic'
...
Otherwise the resulting binaries are specialized for the machine they're
built on (like -march=native)
2023-02-22 12:14:01 +01:00
Artturi
cdcca1cdcd
Merge pull request #215715 from Artturin/removegirworkarounds2
2023-02-18 20:12:57 +02:00
Artturin
cadffcfe50
treewide: remove issue #56943 workarounds
...
checked with diffoscope+difflog and launching the programs
i have fixed that issue in my other gir PRs
2023-02-17 20:26:13 +02:00
R. Ryantm
a89eef2c5e
cwltool: 3.1.20230209161050 -> 3.1.20230213100550
2023-02-16 20:12:48 +00:00
Felix Buehler
cdb39a86e0
treewide: use optionalString
2023-02-13 21:52:34 +01:00
R. RyanTM
4734c1fce6
cwltool: 3.1.20230201130431 -> 3.1.20230209161050 ( #215856 )
2023-02-11 13:24:03 -05:00
R. Ryantm
9827f080e0
cwltool: 3.1.20230127121939 -> 3.1.20230201130431
2023-02-03 19:56:10 +00:00
Guillaume Girol
325aba25a7
Merge pull request #212242 from bouk/openmvs-fix-bins
...
openmvs: move binaries to correct location
2023-02-02 19:48:57 +00:00
Bouke van der Bijl
e6276c1d19
Remove installCheckPhase
...
There's no --version flag on the openmvs binaries.
2023-02-01 20:04:54 +01:00
Bouke van der Bijl
b1ea6b2d73
openmvs: add check and instalCheck
2023-02-01 12:10:23 +01:00
Bouke van der Bijl
8003109e39
openmvs: add missing gmp, mpfr
2023-01-31 13:54:21 +01:00
Bouke van der Bijl
1fe7bc7570
openmvs: don't compile test binary
2023-01-31 12:10:06 +01:00
R. Ryantm
d9cde24420
cwltool: 3.1.20221201130942 -> 3.1.20230127121939
2023-01-30 13:13:23 -05:00
Nick Cao
b40f84b205
Merge pull request #212446 from bouk/openmvg-build-lib
...
openmvg: build as shared library
2023-01-27 18:26:26 +08:00
Weijia Wang
dcd69bc308
Merge pull request #212714 from wegank/aarch64-gcc-comments
...
treewide: mark #201254
2023-01-26 15:38:04 +01:00
Weijia Wang
52a28708b8
treewide: mark #201254
2023-01-26 15:11:41 +01:00
Luflosi
b547e203d6
boinc: 7.20.5 -> 7.22.0
...
https://github.com/BOINC/boinc/releases/tag/client_release%2F7.22%2F7.22.0
2023-01-25 12:49:01 +01:00
Bouke van der Bijl
a725652372
openmvg: don't build shared if isStatic
2023-01-25 10:48:16 +01:00
Bouke van der Bijl
6917c3116b
openmvg: build as shared library
2023-01-24 16:30:52 +01:00
Bouke van der Bijl
0dcc6bc710
Add missing 'optional' packages
2023-01-23 15:24:46 +01:00
Bouke van der Bijl
37abe67414
openmvg: add missing dependencies
...
* Use external cereal
* Add openmp for parallel processing
* Add bouk as maintainer
2023-01-23 14:46:58 +01:00
Bouke van der Bijl
b705896d69
openmvs: move binaries to correct location
...
Turns out the build puts the binaries into an OpenMVS directory so it
doesn't work when the bin folder is added to the PATH.
2023-01-23 11:33:21 +01:00
Nick Cao
ffa956cb00
Merge pull request #212039 from Et7f3/fix_ocamlPackages.megam
...
Fix ocaml packages.megam
2023-01-23 09:18:58 +08:00
Weijia Wang
6e9ffe5b99
Merge pull request #190246 from r-ryantm/auto-update/bada-bib
...
bada-bib: 0.7.2 -> 0.8.0
2023-01-22 23:33:47 +01:00
Et7f3
637880a98c
ocamlPackages.megam: fix build with ocaml_5_0
2023-01-22 15:35:48 +01:00
Guillaume Girol
33afbf39f6
treewide: switch to nativeCheckInputs
...
checkInputs used to be added to nativeBuildInputs. Now we have
nativeCheckInputs to do that instead. Doing this treewide change allows
to keep hashes identical to before the introduction of
nativeCheckInputs.
2023-01-21 12:00:00 +00:00
Bouke van der Bijl
b3dead4ffb
openmvs: init at 2.1.0
2023-01-20 15:50:59 +01:00
Bouke van der Bijl
e3848c1ec4
openmvg: 2.0 -> unstable-2022-12-30 ( #211560 )
2023-01-20 13:08:22 +01:00
Artturi
f837537cdd
Merge pull request #207034 from ShamrockLee/root-layout
2023-01-19 15:51:39 +02:00
ppenguin
6b2a42af7d
openmodelica: add openscenegraph to OMEdit build (enables 3D animation)
2023-01-16 12:15:14 +01:00
Fabian Affolter
1493baebd9
cwltool: 3.1.20220224085855 -> 3.1.20221201130942
...
Changelog: https://github.com/common-workflow-language/cwltool/releases/tag/3.1.20221201130942
2023-01-15 14:57:12 +01:00
Weijia Wang
b40f0196f3
megam: add darwin support ( #209898 )
...
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
2023-01-15 02:50:59 +01:00
Weijia Wang
f0425af6cd
root5: migrate to python3
2023-01-05 10:56:07 +01:00
Shamrock Lee
c1027175c1
root: fix output directory layout with -Dgnuinstall=ON
...
Make "$out" more conformant to the bin/ lib/ share/ hirarchy
instead of messing up the user profile
with stuff like cmake/ config/ macros/ icons/ js/ tutorials/ ...
In this layout,
* `tutorials` is now under `share/doc/ROOT/tutorial`
* `cmake`, `font`, `icons`, `js` and `macro` is now under `share/root`
* `Makefile.comp` and `Makefile.config` in now under `etc/root`.
2022-12-21 03:03:49 +08:00
Shamrock Lee
c09e03c1a6
root: remove the already-default CMAKE_INSTALL_*DIR flags
2022-12-21 03:03:38 +08:00
Dmitry Kalinkin
199975755e
Merge pull request #205394 from ShamrockLee/root-update
...
undefined
2022-12-17 19:58:37 -05:00
Dmitry Kalinkin
49d5867732
root: move nlohmann_json to propagatedBuildInputs
2022-12-17 17:57:37 -05:00
Sandro
ddc265fa1e
Merge pull request #204270 from Luflosi/update/boinc
2022-12-16 02:08:16 +01:00
Artturin
05a2dfd674
lib.replaceChars: warn about being a deprecated alias
...
replaceStrings has been in nix since 2015(nix 1.10)
so it is safe to remove the fallback
d6d5885c15
2022-12-15 22:25:51 +02:00
Luflosi
06137551e6
boinc: 7.20.2 -> 7.20.5
...
https://github.com/BOINC/boinc/releases/tag/client_release%2F7.20%2F7.20.5
Also simplify the code a bit by using `lib.versions.majorMinor` as suggested by @SuperSandro2000.
2022-12-13 18:50:42 +01:00
Shamrock Lee
e23f5f4f92
root: 6.26.8 -> 6.26.10
2022-12-11 18:00:34 +08:00
Shamrock Lee
f2fcf446d0
root: add xrootd support and workaround the xrootd runpath bug
2022-12-11 18:00:32 +08:00
Shamrock Lee
53f8736f10
root: adjust format
2022-12-11 17:45:55 +08:00
Fabian Affolter
7d3c53e6d1
snakemake: rename GitPython
2022-12-05 21:53:53 +01:00
Weijia Wang
280b4b8279
root: fix build on aarch64-linux ( #203267 )
2022-11-29 01:41:49 -05:00
K900
420fd2d25b
graphia: 3.1 -> 3.2
2022-11-26 15:49:07 +03:00
Sandro
2ca694f473
Merge pull request #198552 from wegank/wxgtk-games
2022-11-24 14:21:25 +01:00
Sandro Jäckel
da3200b7b6
Revert "gplates: fix failing build"
...
This reverts commit 8a236e246a
2022-11-16 00:29:02 +01:00
yurket
8a236e246a
gplates: fix failing build
...
Started failing after the commit 11ea0e99b7
2022-11-12 11:33:42 -08:00
Weijia Wang
699e05b52a
root5: migrate to gsl ( #200455 )
2022-11-10 18:59:19 -05:00
Shamrock Lee
a664ec27f4
root: add package test test-thisroot
2022-11-10 09:27:35 +08:00
Shamrock Lee
7f91dec5dd
root: wrap the executable and patch thisroot.*
2022-11-10 09:23:52 +08:00
Dmitry Kalinkin
25fd03cf72
Merge pull request #200412 from wegank/root-darwin
...
root: 6.26.06 -> 6.26.08
2022-11-09 18:16:38 -05:00
Weijia Wang
d474e39f7d
root: fix build on aarch64-darwin
2022-11-09 21:03:59 +01:00
Weijia Wang
5d5c6ded1a
root: 6.26.06 -> 6.26.08
2022-11-09 18:19:45 +01:00
Shamrock Lee
0106a68555
root: enable davix and ssl support ( #200096 )
...
This enables CERN ROOT to open file urls with scheme
`davs://` and `https://`.
The inclusion of `openssl` in buildInputs
will increase neither closure size nor rebuild frequency,
since `python3`, which depends on `openssl`, is already a dependency.
2022-11-09 11:31:37 -05:00
Weijia Wang
e0e6444e50
boinc: unbreak on aarch64-linux
2022-11-09 00:59:14 +01:00
Fabian Affolter
cad704eb95
toil: 5.6.0 -> 5.7.1
2022-11-08 12:17:40 +01:00
Weijia Wang
7f0b7f4cf3
fityk: migrate to wxGTK32
2022-11-03 11:49:13 +01:00
github-actions[bot]
886633ba43
Merge master into staging-next
2022-10-15 00:04:00 +00:00
Markus S. Wamser
c9d167f174
pkgs.applications: remove unused args
2022-10-12 16:00:16 +02:00
Franz Pletz
2c10e089b9
root: fix build with libxcrypt
2022-10-09 18:10:46 +02:00
Franz Pletz
6264d94616
root5: fix build with libxcrypt
2022-10-09 18:10:46 +02:00
R. Ryantm
cdfcbf552e
simgrid: 3.31 -> 3.32
2022-10-06 15:54:46 +08:00
Theodore Ni
2d3705b141
root: mark broken on aarch64
2022-09-29 17:06:14 -07:00
R. Ryantm
f28b6e5468
snakemake: 7.14.1 -> 7.14.2
2022-09-27 19:16:23 -04:00
R. Ryantm
fe2504c61b
snakemake: 7.14.0 -> 7.14.1
2022-09-26 23:13:22 -04:00
Anthony Roussel
341029d5cc
sasview: fix build
...
Caused by `asscalar` numpy API removal.
See https://github.com/SasView/sasview/pull/2178
2022-09-18 20:42:33 +02:00
Sandro Jäckel
224da23db2
sasview: remove unused input
2022-09-11 16:25:56 +02:00
Dmitry Kalinkin
ea1dcc4f8b
Merge pull request #189926 from veprbl/pr/root_rip_via_setup_hook
...
root: populate ROOT_INCLUDE_PATH via the setupHook
2022-09-08 19:45:45 -04:00
R. Ryantm
914100fd45
snakemake: 7.12.1 -> 7.14.0
2022-09-08 09:57:07 -04:00
R. Ryantm
76da07ebfb
bada-bib: 0.7.2 -> 0.8.0
2022-09-08 04:44:53 +00:00
Dmitry Kalinkin
0fe6d6f6b9
root: populate ROOT_INCLUDE_PATH via the setupHook
2022-09-05 18:47:48 -04:00
tpdcl
4f39ada71b
FAHClient: 7.6.13 -> 7.6.21 ( #188476 )
...
This time also in master so it can get in unstable
2022-08-29 19:51:58 +02:00
Artturi
79c42aa06c
Merge pull request #186564 from Artturin/crossevalfixes
...
Fixes for cross-compilation
2022-08-27 17:49:00 +03:00
Jonas Heinrich
fbf9205774
Merge pull request #185912 from r-ryantm/auto-update/fityk
...
fityk: 1.3.1 -> 1.3.2
2022-08-21 21:34:00 +02:00
Artturin
c6568adb00
treewide: makeWrapper buildInputs to nativeBuildInputs
...
most found with https://github.com/siraben/nix-lint
2022-08-16 13:14:19 +03:00
Christian Kögler
121d695571
Merge pull request #183328 from r-ryantm/auto-update/graphia
...
graphia: 3.0 -> 3.1
2022-08-15 14:13:00 +02:00
R. Ryantm
7f3ad42166
snakemake: 7.12.0 -> 7.12.1
2022-08-13 16:16:11 -04:00
R. Ryantm
50f7eed980
fityk: 1.3.1 -> 1.3.2
2022-08-10 13:28:43 +00:00
Dmitry Kalinkin
1e64d9a87c
root: 6.26.04 -> 6.26.06
2022-07-31 19:43:07 -04:00
R. Ryantm
4c3caca96d
snakemake: 7.9.0 -> 7.12.0
2022-07-31 11:06:29 -04:00
R. Ryantm
8ecdb52267
graphia: 3.0 -> 3.1
2022-07-28 13:49:36 +00:00
Mario Rodas
0f87b2b305
Merge pull request #181123 from avdv/gephi-0.9.6
...
gephi: 0.9.2 -> 0.9.6
2022-07-24 16:08:03 -05:00
Robert Scott
0b7947c963
Merge pull request #182349 from r-ryantm/auto-update/snakemake
...
snakemake: 7.8.5 -> 7.9.0
2022-07-21 21:35:04 +01:00
R. Ryantm
7a5b52ff26
snakemake: 7.8.5 -> 7.9.0
2022-07-21 15:24:14 +00:00
Bobby Rong
b536142220
Merge pull request #181946 from Luflosi/update/boinc
...
boinc: 7.20.1 -> 7.20.2
2022-07-21 20:01:43 +08:00
Dmitry Kalinkin
3518b4ac5a
Merge pull request #182037 from veprbl/pr/root_6_26_04
...
root: 6.24.06 -> 6.26.04
2022-07-20 17:50:18 -04:00
Artturin
6b8c65acd9
treewide: fix fallout from 'cmake/setup-hook.sh: Don't skip build-RPATH'
2022-07-19 17:47:13 +03:00
Dmitry Kalinkin
b3df13e2d7
root: 6.24.06 -> 6.26.04
2022-07-18 23:14:15 -04:00
Luflosi
bf27ab825e
boinc: 7.20.1 -> 7.20.2
...
https://github.com/BOINC/boinc/releases/tag/client_release%2F7.20%2F7.20.2
2022-07-18 14:33:23 +02:00
Vladimír Čunát
0879ac5da6
Merge branch 'master' into staging-next
2022-07-16 20:07:05 +02:00
Mario Rodas
279e1daf20
Merge pull request #180821 from r-ryantm/auto-update/nextinspace
...
nextinspace: 2.0.3 -> 2.0.5
2022-07-16 09:46:22 -05:00
Artturin
a584822577
treewide: fix fallout from 'cmake/setup-hook.sh: Don't skip build-RPATH'
...
f7414e2
2022-07-15 02:50:09 +03:00
Vladimír Čunát
8169a7fce0
Merge branch 'master' into staging-next
2022-07-13 09:57:41 +02:00
Jonas Heinrich
2349dd5cb2
graphia: 2.2 -> 3.0
2022-07-12 10:01:03 -04:00
github-actions[bot]
5f2ff17a45
Merge master into staging-next
2022-07-11 18:01:16 +00:00
Thomas Tuegel
e1e0d5d513
Merge pull request #108496 from knedlsepp/cmake-rpath
...
cmake/setup-hook.sh: Don't skip build-RPATH
2022-07-11 10:18:47 -05:00
Claudio Bley
16a1651a4a
gephi: 0.9.2 -> 0.9.6
...
Gephi now requies Java 11+.
2022-07-11 16:45:30 +02:00
Bobby Rong
06e537ad60
bada-bib: add missing libadwaita and gtksourceview5 dependency
2022-07-11 13:46:57 +08:00
R. Ryantm
58d35e01aa
nextinspace: 2.0.3 -> 2.0.5
2022-07-09 07:19:07 +00:00
R. Ryantm
4975868d54
bada-bib: 0.6.2 -> 0.7.2
2022-07-06 00:52:29 +00:00
R. RyanTM
200d8c500a
snakemake: 7.8.3 -> 7.8.5 ( #179874 )
2022-07-04 12:24:26 -04:00
Josef Kemetmüller
bcd7045998
treewide: Remove now-unneeded LD_LIBRARY_PATH in cmake derivations
...
Since the setting DCMAKE_SKIP_BUILD_RPATH was disabled, we can now run
the checkPhase of cmake derivations without having to tweak the
LD_LIBRARY_PATH anymore.
2022-07-04 03:49:01 +03:00
Luflosi
6eea86625e
boinc: 7.20.0 -> 7.20.1
...
https://github.com/BOINC/boinc/releases/tag/client_release%2F7.20%2F7.20.1
2022-07-02 15:56:06 +02:00
Lassulus
c58d141dcc
Merge pull request #177268 from Luflosi/update/boinc
...
boinc: 7.18.1 -> 7.20.0
2022-06-23 21:14:33 +02:00
Robert Scott
070028a960
fahcontrol: remove autoPatchelfHook argument
...
this is confusing as it is not used - the package .deb only contains
python (and bash)
2022-06-23 18:38:23 +01:00
Robert Scott
466c2e342a
treewide/applications: add sourceType binaryNativeCode for many packages
2022-06-23 18:38:19 +01:00
R. Ryantm
671aeb2769
snakemake: 7.8.2 -> 7.8.3
2022-06-21 19:01:53 +00:00
Luflosi
0045581c23
boinc: 7.18.1 -> 7.20.0
...
https://github.com/BOINC/boinc/releases/tag/client_release%2F7.20%2F7.20.0
2022-06-11 11:26:45 +02:00
R. Ryantm
acf23020f0
snakemake: 7.8.1 -> 7.8.2
2022-06-09 19:49:56 +00:00
Robert Scott
3b6bc4b69c
treewide: set sourceProvenance for packages containing downloaded jars
...
these are the easily identifiable cases and will not be comprehensive
2022-06-04 19:47:57 +01:00
R. Ryantm
e9fb739e59
snakemake: 7.8.0 -> 7.8.1
2022-06-02 01:20:40 +00:00
R. RyanTM
7a54d237e0
snakemake: 7.7.0 -> 7.8.0 ( #174592 )
2022-05-30 10:51:36 -04:00
Rick van Schijndel
433701147a
treewide: pkgs/applications: mark broken for aarch64-linux
2022-05-30 13:42:58 +02:00
Rick van Schijndel
90869787c5
boinc: mark broken for aarch64
2022-05-29 10:56:03 +02:00
Fabian Affolter
44b8ec5ccb
Merge pull request #173416 from r-ryantm/auto-update/snakemake
...
snakemake: 7.6.2 -> 7.7.0
2022-05-17 20:39:48 +02:00
R. Ryantm
a52b64015a
snakemake: 7.6.2 -> 7.7.0
2022-05-17 16:18:18 +00:00
Dmitry Kalinkin
fdf0806386
root5: fix build with recent gcc
2022-05-16 11:53:42 -04:00
R. Ryantm
5b55f851ac
snakemake: 7.6.1 -> 7.6.2
2022-05-07 16:16:09 +00:00
R. Ryantm
166b1378fe
snakemake: 7.5.0 -> 7.6.1
2022-05-04 16:06:44 +00:00
Fabian Affolter
8b176291d7
snakemake: 6.15.5 -> 7.5.0
2022-05-01 13:02:10 +02:00
Serge K
1248ea16e1
colmap: fix for cuda11.6/gcc11 ( #169623 )
...
* colmap: force nvcc std=c++14 after gcc11 bump
* colmap: optional -> optionals
* colmap: sha256 -> hash
* colmapWithCuda: force CUDA_ENABLED=ON safeguard
* colmapWithCuda: add opengl runpath
2022-04-27 16:09:30 -07:00
Ryan Mulligan
f05a748058
Merge pull request #169246 from r-ryantm/auto-update/bada-bib
...
bada-bib: 0.6.1 -> 0.6.2
2022-04-24 13:58:11 -07:00
veprbl
2511bad8aa
Merge pull request #168973 from veprbl/pr/root5_glibc_fix
...
root5: fix for glibc
2022-04-19 14:56:09 -04:00
R. Ryantm
9919952421
bada-bib: 0.6.1 -> 0.6.2
2022-04-19 00:53:01 +00:00
Dmitry Kalinkin
81f9e28844
root5: fix for glibc
2022-04-16 17:20:16 -04:00
Fabián Heredia Montiel
5275050ab0
fityk: add -std=c++11 flag for gcc11 and later
2022-04-16 11:11:46 -05:00
github-actions[bot]
bf63dd7434
Merge staging-next into staging
2022-04-10 18:01:38 +00:00
Lassulus
973fa1917c
Merge pull request #162300 from r-ryantm/auto-update/cwltool
...
cwltool: 3.1.20220221074232 -> 3.1.20220224085855
2022-04-10 13:37:54 +01:00
Martin Weinelt
bf1914e12a
Merge remote-tracking branch 'origin/staging-next' into staging
2022-04-05 04:05:02 +02:00
Ryan Mulligan
b56cf0ed6a
Merge pull request #167069 from r-ryantm/auto-update/bada-bib
...
bada-bib: 0.6.0 -> 0.6.1
2022-04-04 13:51:15 -07:00
Martin Weinelt
f95a3d1140
Merge remote-tracking branch 'origin/staging-next' into staging
2022-04-04 00:46:25 +02:00
R. Ryantm
2a5b81d50f
bada-bib: 0.6.0 -> 0.6.1
2022-04-03 19:11:54 +00:00
ajs124
f9ad6fb744
openmvs: remove after being marked broken for over two years
...
It was marked in commit 796050fedd
2022-04-03 16:14:19 +01:00
github-actions[bot]
9aa014c46a
Merge staging-next into staging
2022-03-31 12:02:10 +00:00
R. Ryantm
53dff2f7c8
rink: 0.6.2 -> 0.6.3
2022-03-28 18:13:37 +00:00
github-actions[bot]
8357b101a5
Merge staging-next into staging
2022-03-25 12:02:05 +00:00
davidak
6ea8d5ee71
Merge pull request #165297 from Stunkymonkey/treewide-pname-version-17
...
treewide: rename name to pname&version
2022-03-24 16:38:33 +01:00
Doron Behar
4a02c56a7d
Merge pull request #164746 from ncfavier/makeWrapper-chdir
2022-03-24 13:51:27 +02:00
Felix Buehler
3bc5196252
treewide: rename name to pname&version
2022-03-23 22:55:50 +01:00
Millian Poquet
9ff032c291
simgrid: 3.30 -> 3.31
...
- addition of the optional eigen dependency, used by a new simulation
model (bmf) that looks very promising to take interference phenomena
into account while remaining coarse-grained.
- enabled the new dependency by default as I think this is interesting
for most users.
2022-03-22 14:52:22 +01:00
Armeen Mahdian
858e03cf1f
golly-beta: remove
...
Golly is more up to date
2022-03-21 07:08:53 -05:00
Naïm Favier
9160044f5f
treewide/makeWrapper: replace --run cd with --chdir
...
Lay the groundwork for switching to binary wrappers by reducing uses
of `--run` (which is not supported by `makeBinaryWrapper`).
2022-03-19 09:46:31 +01:00
Rasmus Thomsen
69895c6248
bada-bib: 0.5.1 -> 0.6.0
2022-03-15 12:50:26 +01:00
Dmitry Kalinkin
149d68268d
root: fix ROOTConfig.cmake.in patching
2022-03-04 21:04:19 -05:00
R. Ryantm
de0ff65232
cwltool: 3.1.20220221074232 -> 3.1.20220224085855
2022-03-01 03:46:50 +00:00
K900
cb2cfba6f7
treewide: switch all desktop file generators to new API
...
Notably:
- remove explicit arguments that match the defaults
- convert everything to the right Nix types
2022-02-25 13:40:38 -08:00
R. Ryantm
d6a24fc108
cwltool: 3.1.20220217222804 -> 3.1.20220221074232
2022-02-24 15:52:49 -05:00
Bobby Rong
93883402a4
Merge pull request #160594 from Cogitri/bada-bib
...
bada-bib: 0.4.1 -> 0.5.1
2022-02-22 12:10:40 +08:00
Rasmus Thomsen
87c1d9f92c
bada-bib: 0.4.1 -> 0.5.1
2022-02-21 16:33:50 +01:00
R. Ryantm
c35aa0a0f3
cwltool: 3.1.20220217190813 -> 3.1.20220217222804
2022-02-21 01:31:33 -05:00
Millian Poquet
bc2604732e
simgrid: mark as broken on darwin
2022-02-19 10:05:17 +01:00
Millian Poquet
3f804f68bc
simgrid: 3.28 -> 3.30 + python + clean
...
- use latest SimGrid release
- enable the python binding (in new output "python")
- reviews from PR 141040 have been applied
2022-02-19 10:05:12 +01:00
R. Ryantm
b715fcd9d9
cwltool: 3.1.20220210171524 -> 3.1.20220217190813
2022-02-18 00:36:37 -05:00
R. RyanTM
ac1c96ecec
colmap: 3.6 -> 3.7
...
* colmap: 3.6 -> 3.7 (#159198 )
* colmap: license is BSD-3-Clause
Co-authored-by: Renaud <c0bw3b@users.noreply.github.com>
2022-02-18 00:29:14 +01:00
Daniel Wheeler
4befe7a89f
snakemake: 6.10.0 -> 6.15.5 ( #159026 )
...
Fetch from GitHub rather than PyPI so tests are included.
2022-02-17 18:06:23 -05:00
Zhong Jianxin
e8f3914985
treewide: Replace transfig with fig2dev
...
Reasons:
- transfig never get upstream update since it was added to nixpkgs 2006,
according to [fig2dev Debian changelog][1], upstream maintainership
was taken over at 2016, and renamed to fig2dev.
- [Debian][2], [ArchLinux][3], [HomeBrew][4] all use fig2dev to replace
transfig.
- transfig builds [failed][5] on aarch64-darwin, fig2dev builds fine.
- One less package to maintain.
[1]: https://salsa.debian.org/debian/fig2dev/-/blob/debian/1%253.2.6_beta-1/debian/changelog
[2]: https://packages.debian.org/bullseye/transfig
[3]: https://archlinux.org/packages/community/x86_64/fig2dev/
[4]: https://formulae.brew.sh/formula/fig2dev
[5]: https://hydra.nixos.org/build/163404782/nixlog/2
2022-02-15 10:13:56 +08:00
R. Ryantm
2220d35562
bada-bib: 0.3.0 -> 0.4.1
2022-02-12 22:22:46 -08:00
R. Ryantm
24b505484b
cytoscape: 3.9.0 -> 3.9.1
2022-02-12 21:13:11 -08:00
R. Ryantm
1631ffae8d
cwltool: 3.1.20220204090313 -> 3.1.20220210171524
2022-02-11 12:44:06 -05:00
R. RyanTM
1bfc1730e1
cwltool: 3.1.20220202173120 -> 3.1.20220204090313 ( #158272 )
2022-02-05 15:14:21 -05:00
Sandro
63a6539b76
Merge pull request #157198 from afontaine/afontaine/correct-fah-shortcuts
2022-02-04 18:26:20 +01:00
R. Ryantm
af3af2df32
cwltool: 3.1.20220124184855 -> 3.1.20220202173120
2022-02-03 20:06:12 -05:00
markuskowa
65bc2de0ef
Merge pull request #152447 from Cogitri/bada-bib
...
bada-bib: init at 0.3.0
2022-02-01 22:26:26 +01:00
Robert Schütz
a13fe11c59
sasview: 4.2.0 -> 5.0.4
2022-01-30 20:47:10 +00:00
Andrew Fontaine
3c0680b783
fahviewer: fix variable substitution for shortcut
...
Because single quotes are used in the sed command, the application
shortcut had the literal $out instead of the package path.
2022-01-28 16:47:24 -05:00
Andrew Fontaine
ba785adb28
fahcontrol: fix variable substitution for shortcut
...
Because single quotes are used in the sed command, the application
shortcut had the literal $out instead of the package path.
2022-01-28 16:46:52 -05:00
Yipeng Sun
54cbee8d97
root: tweak wrapping flags for auxiliary programs, avoid forcing CMAKE_CXX_STANDARD ( #157069 )
2022-01-27 19:37:36 -05:00
Sandro
27cccd4e49
Merge pull request #151363 from Stunkymonkey/doc-updateWalker
2022-01-27 14:06:36 +01:00
ajs124
3638ca8be6
Merge pull request #156001 from helsinki-systems/upd/tulip
...
tulip: 5.2.1 -> 5.6.1
2022-01-26 23:33:44 +01:00
Felix Buehler
ed7bf9452c
treewide: remove *.upstream files from updateWalker
2022-01-26 21:46:07 +01:00
R. Ryantm
6b3bf39220
cwltool: 3.1.20220119140128 -> 3.1.20220124184855
2022-01-25 21:56:09 -05:00
R. Ryantm
f888e66ad4
cwltool: 3.1.20211107152837 -> 3.1.20220119140128
2022-01-21 09:09:34 -05:00
ajs124
479ca09609
tulip: 5.2.1 -> 5.6.1
2022-01-21 03:45:21 +01:00
Robert Schütz
d5cceedbd1
python,pythonPackages: make aliases
...
Since aliases are disallowed in nixpkgs, this makes usage of Python 2
which is EOL more explicit.
2022-01-16 18:39:59 +00:00
Bobby Rong
cb3da55ede
Merge pull request #154988 from veprbl/pr/broken_gplates
...
gplates: mark as broken on darwin
2022-01-15 13:24:14 +08:00
Bobby Rong
a6ed245599
Merge pull request #154989 from veprbl/pr/broken_graphia
...
graphia: mark as broken on darwin
2022-01-15 13:23:31 +08:00
Fabian Affolter
49574fc9d5
Merge pull request #154934 from fabaff/fix-toil
...
toil: 5.4.0 -> 5.6.0
2022-01-14 21:16:45 +01:00
Dmitry Kalinkin
2b9f8eb0a2
graphia: mark as broken on darwin
2022-01-14 03:38:54 -05:00
Dmitry Kalinkin
69d78f174a
gplates: mark as broken on darwin
2022-01-14 03:33:15 -05:00
Shamrock Lee
cc5ffb3de4
root: Explicit specify -Dtmva=ON
2022-01-14 14:19:33 +08:00
Shamrock Lee
336cc50b1f
root: add openblas and lapack into buildInputs for TMVA
2022-01-14 14:15:22 +08:00
Fabian Affolter
32003c3051
toil: 5.4.0 -> 5.6.0
2022-01-13 21:37:08 +01:00
Fabian Affolter
1a549598b4
cwltool: 3.1.20211104071347 -> 3.1.20211107152837
2022-01-12 18:00:43 +01:00
Fabian Affolter
b9c6bff4f0
nextinspace: 1.0.6 -> 2.0.3
2022-01-09 01:17:23 +01:00
Ben Siraphob
39a0a70d29
treewide: fix homepages with permanent redirect to https
2021-12-29 22:06:47 +07:00
Rasmus Thomsen
83e5da9238
bada-bib: init at 0.3.0
2021-12-28 12:40:39 +01:00
Dmitry Kalinkin
d5bdb7d39d
root: fix installation of bin/rootcint and bin/genreflex
2021-12-26 00:07:49 -05:00
Bobby Rong
bcaa1b4633
Merge pull request #149151 from Luflosi/update/boinc
...
boinc: 7.14.2 -> 7.18.1
2021-12-18 21:32:22 +08:00
Oleksii Filonenko
a400948064
Merge pull request #149167 from r-ryantm/auto-update/rink
...
rink: 0.6.1 -> 0.6.2
2021-12-13 14:40:57 +02:00
R. Ryantm
3112fe2ace
openmvg: 1.6 -> 2.0
2021-12-07 20:17:43 +00:00
R. Ryantm
5517f74759
rink: 0.6.1 -> 0.6.2
2021-12-06 23:57:17 +00:00
Luflosi
ca87168c6e
boinc: copy systemd service file to output
2021-12-06 23:56:06 +01:00
Luflosi
4e0d9003fc
boinc: 7.14.2 -> 7.18.1
2021-12-06 23:56:06 +01:00
Luflosi
a7be4f3840
boinc: add Luflosi as maintainer
2021-12-06 23:56:05 +01:00
Michael Raskin
65b2df8b45
golly: 3.3 -> 4.1
2021-12-06 16:27:09 +01:00
Bernardo Meurer
51694b0af4
root5: binutils 2.37 fix
...
Co-authored-by: TredwellGit <tredwell@tutanota.com>
2021-11-28 08:49:32 +00:00
Dmitry Kalinkin
a1b8eb4a30
Merge pull request #144870 from fabaff/fix-cwltool
...
cwltool: 3.1.20210628163208 -> 3.1.20211104071347
2021-11-11 23:41:46 -05:00
Felix Buehler
b52ab3b712
pkgs/applications: rename name to pname&version part 2
2021-11-07 14:53:06 +01:00
Fabian Affolter
18b531b514
cwltool: 3.1.20210628163208 -> 3.1.20211104071347
2021-11-06 13:01:16 +01:00
R. Ryantm
5ba5ff1a84
cytoscape: 3.8.2 -> 3.9.0
2021-10-29 09:08:26 +00:00
Dmitry Kalinkin
49d19b7945
snakemake: 6.7.0 -> 6.10.0
2021-10-24 17:49:14 -04:00
Vladimir Korolev
72d4a1f13d
openmodelica: v1.17.0 -> v1.18.0, add balodja to openmodelica maintainers
2021-10-02 12:39:57 +03:00
Robert Schütz
98c8fc6fd0
gplates: 2.2.0 -> 2.3.0
2021-09-26 23:11:29 -07:00
Dmitry Kalinkin
84f408f206
Merge pull request #136016 from veprbl/pr/root_6_24_04
...
root: 6.24.02 -> 6.24.06
2021-09-15 11:35:07 -04:00
Dmitry Kalinkin
0ec2acf51f
root: build with -Dimt=ON
2021-09-03 12:41:16 -04:00
Dmitry Kalinkin
95b2d74bc5
root: re-enable unvendored LLVM
2021-09-03 12:41:16 -04:00
Dmitry Kalinkin
aedfb59c87
root: 6.24.02 -> 6.24.06
2021-09-03 12:41:04 -04:00
Dmitry Kalinkin
0a312a356c
root5: fix for gcc10
2021-09-01 07:14:56 -04:00
Dmitry Kalinkin
b8c5c06aab
snakemake: 6.6.1 -> 6.7.0
2021-08-28 02:18:38 -04:00
Dmitry Kalinkin
e51edc1e64
Merge pull request #130903 from veprbl/pr/cwltool
...
cwltool: init at 3.1.20210628163208
2021-08-08 11:15:33 -04:00
Ben Siraphob
0f34985134
Merge pull request #122828 from balodja/openmodelica
2021-07-25 09:24:25 +07:00
Vladimir Korolev
5c8561f11a
openmodelica: 1.9.3 -> 1.17.0 with lots of changes
...
Co-authored-by: Jaakko Luttinen <jaakko.luttinen@iki.fi>
Most of changes are:
* separate packages for different openmodelica components,
* qt4 -> qt5,
* patches to instruct the OMEdit wrapper with stdenv executables
location,
* adoption of #89731 and #109595 ,
* openblas -> blas, lapack according to #83888 ,
* parallel building,
* getting rid of spurious build phases,
* correct the license,
* cross-compilation,
* forcing compiler to clang++ according to OM build recommendations,
* drop of pangox_compat according to #75909 and #76412 ,
* better dependencies, and more.
2021-07-24 20:29:26 +03:00
Dmitry Kalinkin
3f24366cda
cwltool: init at 3.1.20210628163208
2021-07-21 22:11:17 -04:00
Sandro
d06f7e07a6
Merge pull request #130925 from SuperSandro2000/python-aliases
2021-07-22 03:21:11 +02:00
Sandro Jäckel
b4099137b1
pythonPackages: deprecate ConfigArgParse alias
2021-07-21 13:32:54 +02:00
Sandro
aee461ddb4
toil: update homepage
2021-07-21 13:28:37 +02:00
Dmitry Kalinkin
866fe59150
toil: init at 5.4.0
2021-07-20 22:18:08 -04:00
Dmitry Kalinkin
3a79b1fece
snakemake: 6.5.3 -> 6.6.1
2021-07-19 16:22:36 -04:00
Dmitry Kalinkin
a93f2af20b
snakemake: add missing optional dependenices
...
These are needed to generate reports
2021-07-19 16:19:27 -04:00
Millian Poquet
c6f34aeaef
simgrid: compile tests in parallel
2021-07-19 14:05:17 +02:00
Millian Poquet
c4ec6ffb78
simgrid: fix paths in smpicc/smpicxx
2021-07-19 14:04:57 +02:00
Millian Poquet
33f915f241
simgrid: propagate boost
...
Since SimGrid include files directly include boost files,
most SimGrid users need boost as well.
2021-07-19 14:03:50 +02:00
Millian Poquet
2d05c2d535
simgrid: 3.27 -> 3.28
2021-07-19 14:01:30 +02:00
Felix Buehler
82cb33a0ae
treewide: remove meta.version
2021-07-18 00:07:38 +02:00
Dmitry Kalinkin
1cbb9c64d1
root,root5: apply nixpkgs-fmt
2021-07-14 16:23:09 -04:00
Dmitry Kalinkin
62ab958fb0
root: 6.24.00 -> 6.24.02
2021-07-14 14:58:15 -04:00
Dmitry Kalinkin
45bed6d99f
snakemake: 6.5.0 -> 6.5.3
2021-07-11 10:40:09 -04:00
Andrew Childs
55dcd99859
root: use pure CoreSymbolication on Darwin
...
The current build works by linking against CoreSymbolication in
/System/Library/PrivateFrameworks. This is impure and doesn't work in
newer versions of macOS.
See https://github.com/NixOS/nixpkgs/issues/128576
2021-06-29 11:00:05 +09:00
Dmitry Kalinkin
e3678ae8a6
snakemake: 6.0.5 -> 6.5.0
2021-06-24 11:36:26 -04:00
Sandro
47480918a5
Merge pull request #125802 from yipengsun/root-6-24-00
2021-06-09 15:42:05 +02:00
Yipeng Sun
ffced8d681
root: 6.22.08 -> 6.24.00
...
We switched to the bundled llvm-clang combo because to use the llvm
provided in nixpkgs, clang also needs to be patched and built
externally, which is too much trouble.
2021-06-09 14:06:13 +02:00
Sandro
c037394f5f
Merge pull request #117606 from bgamari/graphia
2021-06-05 16:31:10 +02:00
Ben Gamari
dcfaa98677
graphia: init at 2.2
...
Graphia is a relatively new tool for graph visualisation and analysis,
in the same vain as gephi.
2021-06-02 09:07:32 -04:00
Sandro Jäckel
d6ff646b3f
pythonPackages.smart_open: rename to smart-open
2021-05-22 15:02:50 -07:00
Stéphan Kochen
7e9451ffb3
rink: fix darwin build ( #123501 )
2021-05-18 10:34:25 -04:00
Jonathan Ringer
1d85caaa26
root: fix build
2021-05-08 01:29:18 -07:00
V
5a835e6e92
rink: 0.6.0 -> 0.6.1
2021-05-01 10:46:51 +02:00
Fabian Affolter
e4149e6e0b
rink: specify license
2021-04-11 23:18:32 +02:00
R. RyanTM
12518ff683
rink: 0.5.1 -> 0.6.0
2021-04-11 14:49:45 +00:00
Dmitry Kalinkin
1d93243467
root: 6.22.06 -> 6.22.08
2021-04-06 02:41:06 -04:00
Sandro Jäckel
3453b89f4b
lzma: deprecate alias
2021-04-04 19:49:52 +02:00
Millian Poquet
99a5de6ebc
simgrid: 3.26 -> 3.27
2021-03-29 21:20:27 +02:00
Dmitry Kalinkin
8887f4655e
snakemake: 5.28.0 -> 6.0.5
2021-03-26 18:32:26 -04:00
Ben Siraphob
e03c068af5
treewide: makeWrapper buildInputs to nativeBuildInputs
2021-02-19 20:09:16 +07:00
Sandro Jäckel
6ad10c3bcd
treewide: Remove doBuild cause it does not exist
2021-02-02 14:46:06 +01:00
Pavol Rusnak
a6ce00c50c
treewide: remove stdenv where not needed
2021-01-25 18:31:47 +01:00
Jonathan Ringer
9bb3fccb5b
treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nix
...
continuation of #109595
pkgconfig was aliased in 2018, however, it remained in
all-packages.nix due to its wide usage. This cleans
up the remaining references to pkgs.pkgsconfig and
moves the entry to aliases.nix.
python3Packages.pkgconfig remained unchanged because
it's the canonical name of the upstream package
on pypi.
2021-01-19 01:16:25 -08:00
Ben Siraphob
badf51221d
treewide: stdenv.lib -> lib
2021-01-16 17:58:11 +07:00
