Merge branch 'master' into eventlist

pkgs/applications/audio/mpc/default.nix

@@ -0,0 +1,27 @@
+{ stdenv, fetchurl, mpd_clientlib }:
+
+stdenv.mkDerivation rec {
+  version = "0.23";
+  name = "mpc-${version}";
+
+  src = fetchurl {
+    url = "http://www.musicpd.org/download/mpc/0/${name}.tar.bz2";
+    sha256 = "1ir96wfgq5qfdd2s06zfycv38g3bhn3bpndwx9hwf1w507rvifi9";
+  };
+	
+  buildInputs = [ mpd_clientlib ]; 
+  
+  preConfigure =
+    ''
+      export LIBMPDCLIENT_LIBS=${mpd_clientlib}/lib/libmpdclient.so.${mpd_clientlib.majorVersion}.0.${mpd_clientlib.minorVersion}
+      export LIBMPDCLIENT_CFLAGS=${mpd_clientlib}
+    '';
+
+  meta = {
+    description = "A minimalist command line interface to MPD";
+    homepage = http://www.musicpd.org/clients/mpc/;
+    license = "GPL2";
+    maintainers = [ stdenv.lib.maintainers.algorith ];
+    platforms = stdenv.lib.platforms.linux;
+  };
+}

pkgs/applications/audio/rubyripper/default.nix

@@ -0,0 +1,16 @@
+{ stdenv, fetchurl, ruby, cdparanoia, makeWrapper }:
+stdenv.mkDerivation rec {
+  version = "0.6.2";
+  name = "rubyripper-${version}";
+  src = fetchurl {
+    url = "https://rubyripper.googlecode.com/files/rubyripper-${version}.tar.bz2";
+    sha256 = "1fwyk3y0f45l2vi3a481qd7drsy82ccqdb8g2flakv58m45q0yl1";
+  };
+  configureFlags = [ "--enable-cli" ];
+  buildInputs = [ ruby cdparanoia makeWrapper ];
+  postInstall = ''
+    wrapProgram "$out/bin/rrip_cli" \
+      --prefix PATH : "${ruby}/bin" \
+      --prefix PATH : "${cdparanoia}/bin"
+  '';
+}

pkgs/applications/editors/aseprite/default.nix

@@ -0,0 +1,48 @@
+{ stdenv, fetchurl, cmake, pkgconfig
+, giflib, libjpeg, zlib, libpng, tinyxml, allegro
+, libX11, libXext, libXcursor, libXpm, libXxf86vm, libXxf86dga
+}:
+
+stdenv.mkDerivation rec {
+  name = "aseprite-0.9.5";
+
+  src = fetchurl {
+    url = "http://aseprite.googlecode.com/files/${name}.tar.xz";
+    sha256 = "0m7i6ybj2bym4w9rybacnnaaq2jjn76vlpbp932xcclakl6kdq41";
+  };
+
+  buildInputs = [
+    cmake pkgconfig
+    giflib libjpeg zlib libpng tinyxml allegro
+    libX11 libXext libXcursor libXpm libXxf86vm libXxf86dga
+  ];
+
+  patchPhase = ''
+    sed -i '/^find_unittests/d' src/CMakeLists.txt
+    sed -i '/include_directories(.*third_party\/gtest.*)/d' src/CMakeLists.txt
+    sed -i '/add_subdirectory(gtest)/d' third_party/CMakeLists.txt
+    sed -i 's/png_\(sizeof\)/\1/g' src/file/png_format.cpp
+  '';
+
+  cmakeFlags = ''
+    -DUSE_SHARED_GIFLIB=ON
+    -DUSE_SHARED_JPEGLIB=ON
+    -DUSE_SHARED_ZLIB=ON
+    -DUSE_SHARED_LIBPNG=ON
+    -DUSE_SHARED_LIBLOADPNG=ON
+    -DUSE_SHARED_TINYXML=ON
+    -DUSE_SHARED_GTEST=ON
+    -DUSE_SHARED_ALLEGRO4=ON
+    -DENABLE_UPDATER=OFF
+  '';
+
+  NIX_LDFLAGS = "-lX11";
+
+  meta = {
+    description = "Animated sprite editor & pixel art tool";
+    homepage = "http://www.aseprite.org/";
+    license = stdenv.lib.licenses.gpl2Plus;
+    platforms = stdenv.lib.platforms.linux;
+    maintainers = with stdenv.lib.maintainers; [iyzsong];
+  };
+}

pkgs/applications/misc/rxvt_unicode/default.nix

@@ -1,7 +1,7 @@
 { stdenv, fetchurl, perlSupport, libX11, libXt, libXft, ncurses, perl,
   fontconfig, freetype, pkgconfig, libXrender, gdkPixbufSupport, gdk_pixbuf }:
 
-let 
+let
   name = "rxvt-unicode";
   version = "9.16";
   n = "${name}-${version}";
@@ -17,14 +17,14 @@ stdenv.mkDerivation (rec {
   };
 
   buildInputs =
-    [ libX11 libXt libXft ncurses /* required to build the terminfo file */ 
+    [ libX11 libXt libXft ncurses /* required to build the terminfo file */
       fontconfig freetype pkgconfig libXrender ]
     ++ stdenv.lib.optional perlSupport perl
     ++ stdenv.lib.optional gdkPixbufSupport gdk_pixbuf;
 
   preConfigure =
     ''
-      configureFlags="--with-terminfo=$out/share/terminfo ${if perlSupport then "--enable-perl" else "--disable-perl"}";
+      configureFlags="--with-terminfo=$out/share/terminfo --enable-256-color ${if perlSupport then "--enable-perl" else "--disable-perl"}";
       export TERMINFO=$out/share/terminfo # without this the terminfo won't be compiled by tic, see man tic
       NIX_CFLAGS_COMPILE="$NIX_CFLAGS_COMPILE -I${freetype}/include/freetype2"
       NIX_LDFLAGS="$NIX_LDFLAGS -lfontconfig -lXrender "

pkgs/applications/science/math/R/default.nix

@@ -55,6 +55,8 @@ stdenv.mkDerivation rec {
 
   enableParallelBuilding = true;
 
+  setupHook = ./setup-hook.sh;
+
   meta = {
     homepage = "http://www.r-project.org/";
     description = "a free software environment for statistical computing and graphics";

pkgs/applications/science/math/R/setup-hook.sh

@@ -0,0 +1,5 @@
+addRLibPath () {
+    addToSearchPath R_LIBS_SITE $1/library
+}
+
+envHooks=(${envHooks[@]} addRLibPath)

pkgs/applications/version-management/git-and-tools/fast-export/default.nix

@@ -5,7 +5,8 @@ stdenv.mkDerivation {
 
   src = fetchgit {
     url = "git://repo.or.cz/fast-export.git";
-    rev = "refs/heads/master";
+    rev = "aaccfba";
+    sha256 = "c9d1498e31d32b8271c1e651175794718611f93b4843dea569d831005de0a750";
   };
 
   buildInputs = [mercurial.python mercurial makeWrapper subversion];
@@ -19,7 +20,6 @@ stdenv.mkDerivation {
     sed -i "s@/usr/bin/env.*@$(type -p python)@" *.py
     l=$out/libexec/git-fast-export
     mkdir -p $out/{bin,doc/git-fast-export} $l
-    mv *.txt $out/doc/git-fast-export
     sed -i "s@ROOT=.*@ROOT=$l@" *.sh
     mv *.sh $out/bin
     mv *.py $l

pkgs/applications/video/gpac/default.nix

@@ -4,9 +4,9 @@ stdenv.mkDerivation rec {
   name = "gpac-0.5.0-svn";
 
   src = fetchsvn {
-    url = "https://gpac.svn.sourceforge.net/svnroot/gpac/trunk/gpac";
+    url = "http://svn.code.sf.net/p/gpac/code/trunk/gpac";
-    rev = "4253";
+    rev = "4749";
-    sha256 = "0z4bd63c805q53hpb09gq0m0apy12z5a90zxx4jjx3ln64xq0pnn";
+    sha256 = "0y38pmp64a2l70y1yby90qzxfzx8y7r0cdmgjxzw86jh6si5ndhp";
   };
 
   # this is the bare minimum configuration, as I'm only interested in MP4Box

pkgs/build-support/fetchurl/mirrors.nix

@@ -271,4 +271,100 @@ rec {
     ftp://ftp.xemacs.org/sites/metalab.unc.edu/
   ];
 
+  # CRAN mirrors (from http://cran.r-project.org/mirrors.html)
+  cran = [
+    http://cran.r-project.org/
+    http://cran.rstudio.com/
+    http://mirror.fcaglp.unlp.edu.ar/CRAN/
+    http://r.mirror.mendoza-conicet.gob.ar/
+    http://cran.csiro.au/
+    http://cran.ms.unimelb.edu.au/
+    http://cran.at.r-project.org/
+    http://www.freestatistics.org/cran/
+    http://cran-r.c3sl.ufpr.br/
+    http://cran.fiocruz.br/
+    http://www.vps.fmvz.usp.br/CRAN/
+    http://brieger.esalq.usp.br/CRAN/
+    http://cran.stat.sfu.ca/
+    http://mirror.its.dal.ca/cran/
+    http://probability.ca/cran/
+    http://cran.skazkaforyou.com/
+    http://cran.parentingamerica.com/
+    http://dirichlet.mat.puc.cl/
+    http://ftp.ctex.org/mirrors/CRAN/
+    http://mirror.bjtu.edu.cn/cran
+    http://cran.dataguru.cn/
+    http://mirrors.ustc.edu.cn/CRAN/
+    http://mirrors.xmu.edu.cn/CRAN/
+    http://www.laqee.unal.edu.co/CRAN/
+    http://www.icesi.edu.co/CRAN/
+    http://mirrors.dotsrc.org/cran/
+    http://cran.espol.edu.ec/
+    http://cran.univ-lyon1.fr/
+    http://mirror.ibcp.fr/pub/CRAN/
+    http://ftp.igh.cnrs.fr/pub/CRAN/
+    http://cran.irsn.fr/
+    http://cran.univ-paris1.fr/
+    http://mirrors.softliste.de/cran/
+    http://cran.r-mirror.de/
+    http://ftp5.gwdg.de/pub/misc/cran/
+    http://cran.cc.uoc.gr/
+    http://cran.rapporter.net/
+    http://ftp.iitm.ac.in/cran/
+    http://cran.repo.bppt.go.id/
+    http://cran.um.ac.ir/
+    http://ftp.heanet.ie/mirrors/cran.r-project.org/
+    http://cran.mirror.garr.it/mirrors/CRAN/
+    http://cran.stat.unipd.it/
+    http://dssm.unipa.it/CRAN/
+    http://essrc.hyogo-u.ac.jp/cran/
+    http://cran.md.tsukuba.ac.jp/
+    http://cran.ism.ac.jp/
+    http://cran.nexr.com/
+    http://biostat.cau.ac.kr/CRAN/
+    http://cran.itam.mx/
+    http://www.est.colpos.mx/R-mirror/
+    http://cran.xl-mirror.nl/
+    http://cran-mirror.cs.uu.nl/
+    http://cran.stat.auckland.ac.nz/
+    http://cran.uib.no/
+    http://cran.stat.upd.edu.ph/
+    http://r.meteo.uni.wroc.pl/
+    http://cran.dcc.fc.up.pt/
+    http://cran.gis-lab.info/
+    http://cran.stat.nus.edu.sg/
+    http://cran.fyxm.net/
+    http://r.adu.org.za/
+    http://cran.mirror.ac.za/
+    http://cran.es.r-project.org/
+    http://ftp.sunet.se/pub/lang/CRAN/
+    http://stat.ethz.ch/CRAN/
+    http://cran.cs.pu.edu.tw/
+    http://cran.csie.ntu.edu.tw/
+    http://mirrors.psu.ac.th/pub/cran/
+    http://cran.pau.edu.tr/
+    http://www.stats.bris.ac.uk/R/
+    http://cran.ma.imperial.ac.uk/
+    http://star-www.st-andrews.ac.uk/cran/
+    http://cran.cnr.berkeley.edu/
+    http://cran.stat.ucla.edu/
+    http://streaming.stat.iastate.edu/CRAN/
+    http://ftp.ussg.iu.edu/CRAN/
+    http://rweb.quant.ku.edu/cran/
+    http://watson.nci.nih.gov/cran_mirror/
+    http://cran.mtu.edu/
+    http://cran.wustl.edu/
+    http://cran.case.edu/
+    http://ftp.osuosl.org/pub/cran/
+    http://lib.stat.cmu.edu/R/CRAN/
+    http://cran.mirrors.hoobly.com/
+    http://mirrors.nics.utk.edu/cran/
+    http://cran.revolutionanalytics.com/
+    http://cran.fhcrc.org/
+    http://cran.cs.wwu.edu/
+    http://camoruco.ing.uc.edu.ve/cran/
+    http://cran.vinastat.com/
+    http://lib.stat.cmu.edu/
+  ];
+
 }

pkgs/desktops/gnome-3/core/gcr/default.nix

@@ -14,5 +14,7 @@ stdenv.mkDerivation rec {
     libgcrypt libtasn1 dbus_glib gtk pango gdk_pixbuf atk
   ];
 
+  configureFlags = "--disable-introspection";
+
   #doCheck = true;
 }

pkgs/development/libraries/haskell/active/default.nix

@@ -4,8 +4,8 @@
 
 cabal.mkDerivation (self: {
   pname = "active";
-  version = "0.1.0.6";
+  version = "0.1.0.7";
-  sha256 = "0hh52hkmma4lxfv3gj7x23cwx8v6wd1cm9hblvhzhylxk8dyl5m7";
+  sha256 = "18pcw98ni8fiy0yd7wmrqvpaf2wgav70rsikqfl571zjmdmzdw7p";
   buildDepends = [ newtype semigroupoids semigroups vectorSpace ];
   testDepends = [
     newtype QuickCheck semigroupoids semigroups vectorSpace

pkgs/development/libraries/haskell/amqp/default.nix

@@ -2,8 +2,8 @@
 
 cabal.mkDerivation (self: {
   pname = "amqp";
-  version = "0.5.0";
+  version = "0.6.0";
-  sha256 = "1i02pp184r1iq40mz16m9qh8i3h1jmf3ykpg67j3i1732cks8n8w";
+  sha256 = "0rfczmhf46sc3pxxb5gwv4ggsxkqkvdi4kkqdnrdpdhs7p41im2n";
   isLibrary = true;
   isExecutable = true;
   buildDepends = [ binary dataBinaryIeee754 network text xml ];

pkgs/development/libraries/haskell/cereal/default.nix

@@ -2,8 +2,8 @@
 
 cabal.mkDerivation (self: {
   pname = "cereal";
-  version = "0.3.5.2";
+  version = "0.4.0.0";
-  sha256 = "0yjxvhagsm552idfrs6d9lzlz6x5878xj1vfg0zxf8w1kixgghil";
+  sha256 = "0q6lrfa2p70mh3d08mbj89anc3p9ycy6wyyiycj5pm62kcimv7rj";
   meta = {
     description = "A binary serialization library";
     license = self.stdenv.lib.licenses.bsd3;

pkgs/development/libraries/haskell/classy-prelude-conduit/default.nix

@@ -1,14 +1,14 @@
 { cabal, classyPrelude, conduit, hspec, monadControl, QuickCheck
-, resourcet, transformers, void, xmlConduit
+, resourcet, systemFileio, transformers, void
 }:
 
 cabal.mkDerivation (self: {
   pname = "classy-prelude-conduit";
-  version = "0.5.3";
+  version = "0.6.0";
-  sha256 = "1rmx439kdjipyz2s3v2s1xv1mb55kb4njl9k6f8mfhykgac39rhz";
+  sha256 = "122clkwrz1n009b5gxq96sbby7i8kb4dgvc90ydamd86bx3pvc84";
   buildDepends = [
-    classyPrelude conduit monadControl resourcet transformers void
+    classyPrelude conduit monadControl resourcet systemFileio
-    xmlConduit
+    transformers void
   ];
   testDepends = [ conduit hspec QuickCheck transformers ];
   meta = {

pkgs/development/libraries/haskell/classy-prelude/default.nix

@@ -1,17 +1,21 @@
 { cabal, async, basicPrelude, deepseq, hashable, hspec, liftedBase
-, monadControl, QuickCheck, systemFilepath, text, transformers
+, monadControl, monoTraversable, QuickCheck, semigroups
-, unorderedContainers, vector
+, systemFilepath, text, transformers, unorderedContainers, vector
+, vectorInstances
 }:
 
 cabal.mkDerivation (self: {
   pname = "classy-prelude";
-  version = "0.5.10";
+  version = "0.6.0";
-  sha256 = "04grmld90qr8m6lcdf83clai0anpp8iry7m9l9li8ija9fckl3lk";
+  sha256 = "0wpymr2gl0hmbgpw0qd0h1ik1h42s8raykq7jsdjqnmcvsmww5j6";
   buildDepends = [
     async basicPrelude deepseq hashable liftedBase monadControl
-    systemFilepath text transformers unorderedContainers vector
+    monoTraversable semigroups systemFilepath text transformers
+    unorderedContainers vector vectorInstances
+  ];
+  testDepends = [
+    hspec QuickCheck transformers unorderedContainers
   ];
-  testDepends = [ hspec QuickCheck transformers ];
   meta = {
     homepage = "https://github.com/snoyberg/classy-prelude";
     description = "A typeclass-based Prelude";

pkgs/development/libraries/haskell/crypto-conduit/default.nix

@@ -12,6 +12,7 @@ cabal.mkDerivation (self: {
     skein transformers
   ];
   doCheck = false;
+  jailbreak = true;
   meta = {
     homepage = "https://github.com/meteficha/crypto-conduit";
     description = "Conduit interface for cryptographic operations (from crypto-api)";

pkgs/development/libraries/haskell/data-lens/default.nix

@@ -3,8 +3,8 @@
 
 cabal.mkDerivation (self: {
   pname = "data-lens";
-  version = "2.10.2";
+  version = "2.10.3";
-  sha256 = "1mv4lh5rhmq09d89ci07kj9anv7ckrlqh9x3xr4jq9idf7sf54b5";
+  sha256 = "0x8qrcsnl1z2n3vwld0jcnapmzlzjgyzpa34qjyxpv4f15xn8vic";
   buildDepends = [
     comonad comonadTransformers semigroupoids transformers
   ];

pkgs/development/libraries/haskell/dbus/default.nix

@@ -10,6 +10,7 @@ cabal.mkDerivation (self: {
     cereal libxmlSax network parsec random text transformers vector
     xmlTypes
   ];
+  jailbreak = true;
   meta = {
     homepage = "https://john-millikin.com/software/haskell-dbus/";
     description = "A client library for the D-Bus IPC system";

pkgs/development/libraries/haskell/diagrams/core.nix

@@ -4,8 +4,8 @@
 
 cabal.mkDerivation (self: {
   pname = "diagrams-core";
-  version = "0.7";
+  version = "0.7.0.1";
-  sha256 = "00ba31imq91w6lzy8blgxawr06igrjfrg4adrqy650wip8jafqwq";
+  sha256 = "1826f6yrb0ch07y4bjb1cnqi8giphn2i6g45484qr6bfbb8wj5dg";
   buildDepends = [
     dualTree MemoTrie monoidExtras newtype semigroups vectorSpace
     vectorSpacePoints

pkgs/development/libraries/haskell/diagrams/lib.nix

@@ -5,8 +5,8 @@
 
 cabal.mkDerivation (self: {
   pname = "diagrams-lib";
-  version = "0.7.1";
+  version = "0.7.1.1";
-  sha256 = "1ig7a0ns458aqk9yxya7djdd40x3iyd1lycjygdl3zgl2pjpdva7";
+  sha256 = "14d557y22dqyjr026vbawa2a2yjh7alh3rpavyidfdlrg48lqgrc";
   buildDepends = [
     active colour dataDefaultClass diagramsCore fingertree intervals
     monoidExtras newtype NumInstances semigroups vectorSpace

pkgs/development/libraries/haskell/dual-tree/default.nix

@@ -2,8 +2,8 @@
 
 cabal.mkDerivation (self: {
   pname = "dual-tree";
-  version = "0.1.0.3";
+  version = "0.1.0.4";
-  sha256 = "0k3p1lqhynlqvkbnrs5vn478c76qcn754n5pb17p5i4jcw94bm0n";
+  sha256 = "0xrpb7kz6aazqy9w0b7hcbxgmy4ddy0zh7gdpv2w140vvyx5qjrn";
   buildDepends = [ monoidExtras newtype semigroups ];
   jailbreak = true;
   meta = {

pkgs/development/libraries/haskell/generic-deriving/default.nix

@@ -2,8 +2,8 @@
 
 cabal.mkDerivation (self: {
   pname = "generic-deriving";
-  version = "1.6.1";
+  version = "1.6.2";
-  sha256 = "0c3b3xkjdfp14w48gfk3f6aqz4cgk6i3bl5mci23mbb3f33jcx1j";
+  sha256 = "1ryzg7zgnlhx6mbmpsh4fgqf2d758c94qz2zpg3jxns30hd4sfy6";
   meta = {
     description = "Generic programming library for generalised deriving";
     license = self.stdenv.lib.licenses.bsd3;

pkgs/development/libraries/haskell/ghc-mod/default.nix

@@ -4,8 +4,8 @@
 
 cabal.mkDerivation (self: {
   pname = "ghc-mod";
-  version = "3.1.1";
+  version = "3.1.2";
-  sha256 = "0gz5andg5ap7a71ap82rpkbflgj9fcrw47gyzlbn5rpp110d86jf";
+  sha256 = "164ldbdvr2qrnb9sq0d9y35la4fzwn6x43xqdsi1s10dppckczlm";
   isLibrary = true;
   isExecutable = true;
   buildDepends = [

pkgs/development/libraries/haskell/gitit/default.nix

@@ -2,7 +2,7 @@
 , filepath, filestore, ghcPaths, happstackServer, highlightingKate
 , hslogger, HStringTemplate, HTTP, json, mtl, network, pandoc
 , pandocTypes, parsec, random, recaptcha, safe, SHA, syb, tagsoup
-, text, time, url, utf8String, xhtml, xml, xssSanitize, zlib
+, text, time, url, utf8String, xhtml, xml, xssSanitize, zlib, fetchurl
 }:
 
 cabal.mkDerivation (self: {
@@ -19,6 +19,10 @@ cabal.mkDerivation (self: {
     zlib
   ];
   jailbreak = true;
+  patches = [ (fetchurl { url = "https://github.com/jgm/gitit/commit/48155008397bdaed4f97c5678d83c70d4bc3f0ff.patch";
+                          sha256 = "0xdg9frr8lany8ry6vj4vpskmhkpww8jswnb05pzl8a4xfqxh9gd";
+                        })
+            ];
   meta = {
     homepage = "http://gitit.net";
     description = "Wiki using happstack, git or darcs, and pandoc";

pkgs/development/libraries/haskell/groups/default.nix

@@ -2,8 +2,8 @@
 
 cabal.mkDerivation (self: {
   pname = "groups";
-  version = "0.3.0.0";
+  version = "0.4.0.0";
-  sha256 = "07swv09l98fxh563w1x8n8xzgh9q7n9dbx4gx3i77kwi72vmxl8x";
+  sha256 = "1kp8h3617cimya8nnadljyy4vk66dzl5nzfm900k2gh3ci8kja6k";
   meta = {
     description = "Haskell 98 groups";
     license = self.stdenv.lib.licenses.bsd3;

pkgs/development/libraries/haskell/language-java/default.nix

@@ -5,7 +5,7 @@
 cabal.mkDerivation (self: {
   pname = "language-java";
   version = "0.2.5";
-  sha256 = "1l3q156m3l3fawsrgj3fr16qxr0apwg2si410j0f5hsgfmkhdrm6";
+  sha256 = "1ai6mvzasi8fji4b81nrpy48icf5h25g3kakhpfbzckwf20c9dkd";
   buildDepends = [ cpphs parsec syb ];
   testDepends = [
     filepath HUnit mtl QuickCheck testFramework testFrameworkHunit

pkgs/development/libraries/haskell/mono-traversable/default.nix

@@ -0,0 +1,20 @@
+{ cabal, comonad, hashable, hspec, semigroupoids, semigroups, text
+, transformers, unorderedContainers, vector
+}:
+
+cabal.mkDerivation (self: {
+  pname = "mono-traversable";
+  version = "0.1.0.0";
+  sha256 = "1pkg8lagfiixgq2xb4ficgcqv1hhmxy2r49lq9szar7knh0gcjn1";
+  buildDepends = [
+    comonad hashable semigroupoids semigroups text transformers
+    unorderedContainers vector
+  ];
+  testDepends = [ hspec text ];
+  meta = {
+    homepage = "https://github.com/snoyberg/mono-traversable";
+    description = "Type classes for mapping, folding, and traversing monomorphic containers";
+    license = self.stdenv.lib.licenses.mit;
+    platforms = self.ghc.meta.platforms;
+  };
+})

pkgs/development/libraries/haskell/monoid-extras/default.nix

@@ -2,8 +2,8 @@
 
 cabal.mkDerivation (self: {
   pname = "monoid-extras";
-  version = "0.3.2.0";
+  version = "0.3.2.2";
-  sha256 = "0yhb55v0a2221xbpbm8jiqzqvps0lab5n8iakpq69ndr2l0d2r3x";
+  sha256 = "1fy0fk2mzan6n5chc11x303hz3iq3kpx6ma6c8xsi8va1b9ikpda";
   buildDepends = [ groupoids groups semigroupoids semigroups ];
   jailbreak = true;
   meta = {

pkgs/development/libraries/haskell/ncurses/default.nix

@@ -2,8 +2,8 @@
 
 cabal.mkDerivation (self: {
   pname = "ncurses";
-  version = "0.2.6";
+  version = "0.2.7";
-  sha256 = "0mcgbq67f8hfdqmvm3p59949mbxcc2mgjw889zxvxx0174kn205q";
+  sha256 = "026p6b2apgi9r65py45h3rl57xgwzyamq511a0rsb7myzagw22vz";
   buildDepends = [ text transformers ];
   buildTools = [ c2hs ];
   extraLibraries = [ ncurses ];

pkgs/development/libraries/haskell/pandoc-types/default.nix

@@ -2,8 +2,8 @@
 
 cabal.mkDerivation (self: {
   pname = "pandoc-types";
-  version = "1.12.1.1";
+  version = "1.12.1.2";
-  sha256 = "0afxpsfvhgn8rka1piykddpsav8hdvwiv2gzr06hrlswd0xk89qi";
+  sha256 = "02x1s8m9zzlgj8asr4y247944pg3p8ccnh819rhs2g09qqiq4ylc";
   buildDepends = [ aeson syb ];
   meta = {
     homepage = "http://johnmacfarlane.net/pandoc";

pkgs/development/libraries/haskell/primitive/0.5.1.0.nix

@@ -0,0 +1,14 @@
+{ cabal }:
+
+cabal.mkDerivation (self: {
+  pname = "primitive";
+  version = "0.5.1.0";
+  sha256 = "0a8mf8k62xga5r5dd0fna1swqbx2r94c0mvqnc4mfq640zrsa5w8";
+  meta = {
+    homepage = "https://github.com/haskell/primitive";
+    description = "Primitive memory-related operations";
+    license = self.stdenv.lib.licenses.bsd3;
+    platforms = self.ghc.meta.platforms;
+    maintainers = [ self.stdenv.lib.maintainers.andres ];
+  };
+})

pkgs/development/libraries/haskell/regex-compat-tdfa/default.nix

@@ -2,8 +2,8 @@
 
 cabal.mkDerivation (self: {
   pname = "regex-compat-tdfa";
-  version = "0.95.1.2";
+  version = "0.95.1.3";
-  sha256 = "0b7pp5xq4ybgji5shz5v1a91y6wwzila3vjiyq4nma0xj3njy802";
+  sha256 = "0wl5sqbb3rl5dai3qni8w09wlipc4n1mn9kh5zgb9xl0lcd59pjx";
   buildDepends = [ regexBase regexTdfa ];
   meta = {
     homepage = "http://hub.darcs.net/shelarcy/regex-compat-tdfa";

pkgs/development/libraries/haskell/shake/default.nix

@@ -1,16 +1,16 @@
 { cabal, binary, deepseq, filepath, hashable, random, time
-, transformers, unorderedContainers
+, transformers, unorderedContainers, utf8String
 }:
 
 cabal.mkDerivation (self: {
   pname = "shake";
-  version = "0.10.6";
+  version = "0.10.7";
-  sha256 = "0d2wrgraifcj0rv9jmvc5a0gl0j1jjkc4r0nmaypnv6929kl26q8";
+  sha256 = "0r48kzldbgixr1c83sd7frvygqyjx32n67nri1nnamcwpvlv8hgv";
   isLibrary = true;
   isExecutable = true;
   buildDepends = [
     binary deepseq filepath hashable random time transformers
-    unorderedContainers
+    unorderedContainers utf8String
   ];
   meta = {
     homepage = "http://community.haskell.org/~ndm/shake/";

pkgs/development/libraries/haskell/socks/default.nix

@@ -2,8 +2,8 @@
 
 cabal.mkDerivation (self: {
   pname = "socks";
-  version = "0.5.1";
+  version = "0.5.2";
-  sha256 = "08zwbkglkahjadqn2m7l0k5yp4lcd9h6kgb8k8mjlwxayx82a0ay";
+  sha256 = "1bvvrc0lzjspab7jn31d45za8g6n9jr52mcf7rs5zci99f5jgpsv";
   buildDepends = [ cereal network ];
   meta = {
     homepage = "http://github.com/vincenthz/hs-socks";

pkgs/development/libraries/haskell/vector-instances/default.nix

@@ -0,0 +1,17 @@
+{ cabal, comonad, keys, pointed, semigroupoids, semigroups, vector
+}:
+
+cabal.mkDerivation (self: {
+  pname = "vector-instances";
+  version = "3.3";
+  sha256 = "0iiw9p2ivcdfsh81vdy4yn6hbigdwclrkssd68hdsg9n6q3fmq5y";
+  buildDepends = [
+    comonad keys pointed semigroupoids semigroups vector
+  ];
+  meta = {
+    homepage = "http://github.com/ekmett/vector-instances";
+    description = "Orphan Instances for 'Data.Vector'";
+    license = self.stdenv.lib.licenses.bsd3;
+    platforms = self.ghc.meta.platforms;
+  };
+})

pkgs/development/libraries/haskell/vector/0.10.9.1.nix

@@ -0,0 +1,15 @@
+{ cabal, deepseq, primitive }:
+
+cabal.mkDerivation (self: {
+  pname = "vector";
+  version = "0.10.9.1";
+  sha256 = "1rdx0r7bwx6217ip9mg9yfymvgv52szqv63y89p41b8sfklmcmi0";
+  buildDepends = [ deepseq primitive ];
+  meta = {
+    homepage = "https://github.com/haskell/vector";
+    description = "Efficient Arrays";
+    license = self.stdenv.lib.licenses.bsd3;
+    platforms = self.ghc.meta.platforms;
+    maintainers = [ self.stdenv.lib.maintainers.andres ];
+  };
+})

pkgs/development/libraries/haskell/yesod-core/default.nix

@@ -25,6 +25,7 @@ cabal.mkDerivation (self: {
     QuickCheck random resourcet shakespeareCss shakespeareJs text
     transformers wai waiTest
   ];
+  jailbreak = true;
   meta = {
     homepage = "http://www.yesodweb.com/";
     description = "Creation of type-safe, RESTful web applications";

pkgs/development/libraries/libical/default.nix

@@ -1,11 +1,11 @@
-{stdenv, fetchsvn, perl, cmake}:
+{stdenv, fetchurl, perl, cmake}:
 
 stdenv.mkDerivation rec {
-  name = "libical-0.48-p20120623";
+  pName = "libical";
-  src = fetchsvn {
+  name = "${pName}-1.0";
-    url = "https://freeassociation.svn.sourceforge.net/svnroot/freeassociation/trunk/libical";
+  src = fetchurl {
-    rev = "1130";
+    url = "mirror://sourceforge/freeassociation/${pName}/${name}/${name}.tar.gz";
-    sha256 = "56caf19abdf44807fda75a67ef0886319551e53c4e4ece4da4fc862e34c64e1a";
+    sha256 = "1dy0drz9hy0sn2q3s2lp00jb9bis5gsm7n3m4zga49s9ir2b6fbw";
   };
   nativeBuildInputs = [ perl cmake ];
 

pkgs/development/r-modules/generic/builder.sh

@@ -0,0 +1,23 @@
+source $stdenv/setup
+
+export R_LIBS_SITE="$R_LIBS_SITE${R_LIBS_SITE:+:}$out/library"
+
+
+if test -n "$rPreHook"; then
+    eval "$rPreHook"
+fi
+
+installPhase() {
+	runHook preInstall
+	mkdir -p $out/library
+	R CMD INSTALL -l $out/library $src
+	runHook postInstall
+}
+
+postFixup() {
+    if test -e $out/nix-support/propagated-native-build-inputs; then
+        ln -s $out/nix-support/propagated-native-build-inputs $out/nix-support/propagated-user-env-packages
+    fi
+}
+
+genericBuild

pkgs/development/r-modules/generic/default.nix

@@ -0,0 +1,17 @@
+R:
+
+{ buildInputs ? [], ... } @ attrs:
+
+R.stdenv.mkDerivation (
+  {
+  }
+  //
+  attrs
+  //
+  {
+    name = "r-" + attrs.name;
+    builder = ./builder.sh;
+    buildInputs = buildInputs ++ [ R ];
+    phases = [ "installPhase" "fixupPhase" ];
+  }
+)

pkgs/games/openttd/default.nix

@@ -1,21 +1,21 @@
-{stdenv, fetchurl, pkgconfig, SDL, libpng, zlib, xz, freetype, fontconfig}:
+{ stdenv, fetchurl, pkgconfig, SDL, libpng, zlib, xz, freetype, fontconfig }:
 
 stdenv.mkDerivation rec {
   name = "openttd-${version}";
-  version = "1.2.2";
+  version = "1.3.2";
 
   src = fetchurl {
     url = "http://binaries.openttd.org/releases/${version}/${name}-source.tar.xz";
-    sha256 = "158znfx389bhs9gd2hadnbc2a32z4ma1vz8704cmw9yh0fmhbcap";
+    sha256 = "02r7xfq9a5x1y2wpdhqyczaj48z0qan33hs4i2liahsg1k6w1vzn";
   };
 
-  buildInputs = [SDL libpng pkgconfig xz zlib freetype fontconfig];
+  buildInputs = [ SDL libpng pkgconfig xz zlib freetype fontconfig ];
   prefixKey = "--prefix-dir=";
 
-  configureFlags = ''
+  configureFlags = [
-    --with-zlib=${zlib}/lib/libz.a 
+    "--with-zlib=${zlib}/lib/libz.a"
-    --without-liblzo2
+    "--without-liblzo2"
-  '';
+  ];
 
   makeFlags = "INSTALL_PERSONAL_DIR=";
 
@@ -24,11 +24,11 @@ stdenv.mkDerivation rec {
   '';
 
   meta = {
-    description = ''OpenTTD is an open source clone of the Microprose game "Transport Tycoon Deluxe".'';
+    description = ''OpenTTD is an open source clone of the Microprose game "Transport Tycoon Deluxe"'';
     longDescription = ''
       OpenTTD is a transportation economics simulator. In single player mode,
-      players controll a transportation business, and use rail, road, sea, and air
+      players control a transportation business, and use rail, road, sea, and air
-      transport to move goods and people around the simulated world. 
+      transport to move goods and people around the simulated world.
 
       In multiplayer networked mode, players may:
         - play competitively as different businesses
@@ -37,6 +37,7 @@ stdenv.mkDerivation rec {
     '';
     homepage = http://www.openttd.org/;
     license = "GPLv2";
-    maintainers = with stdenv.lib.maintainers; [ jcumming ];
+    platforms = stdenv.lib.platforms.unix;
+    maintainers = with stdenv.lib.maintainers; [ jcumming the-kenny ];
   };
 }

pkgs/lib/maintainers.nix

@@ -5,6 +5,7 @@
      alphabetically sorted.  */
 
   aforemny = "Alexander Foremny <alexanderforemny@googlemail.com>";
+  algorith = "Dries Van Daele <dries_van_daele@telenet.be>";
   all = "Nix Committers <nix-commits@lists.science.uu.nl>";
   amiddelk = "Arie Middelkoop <amiddelk@gmail.com>";
   amorsillo = "Andrew Morsillo <andrew.morsillo@gmail.com>";

pkgs/os-specific/linux/kernel/linux-3.11.nix

@@ -1,11 +1,11 @@
 { stdenv, fetchurl, ... } @ args:
 
 import ./generic.nix (args // rec {
-  version = "3.11.1";
+  version = "3.11.2";
 
   src = fetchurl {
     url = "mirror://kernel/linux/kernel/v3.x/linux-${version}.tar.xz";
-    sha256 = "16wblz06129lxvxsl3rhmdj4b31yzmwv3rxnjmrlj3c3qlzph29c";
+    sha256 = "139w8g59fa2kw39kkcpln54mvrl2rq1gv3nqdcrhcy6n1b7r4194";
   };
 
   features.iwlwifi = true;

pkgs/servers/mpd/clientlib.nix

@@ -1,8 +1,9 @@
 { stdenv, fetchurl, doxygen }:
 
 stdenv.mkDerivation rec {
-  version = "2.8";
+  version = "${passthru.majorVersion}.${passthru.minorVersion}";
   name = "libmpdclient-${version}";
+
   src = fetchurl {
     url = "http://www.musicpd.org/download/libmpdclient/2/${name}.tar.bz2";
     sha256 = "1qwjkb56rsbk0hwhg7fl15d6sf580a19gh778zcdg374j4yym3hh";
@@ -10,6 +11,11 @@ stdenv.mkDerivation rec {
 
   buildInputs = [ doxygen ];
 
+  passthru = {
+    majorVersion = "2";
+    minorVersion = "8";
+  };
+
   meta = {
     description = "Client library for MPD (music player daemon)";
     homepage = http://mpd.wikia.com/wiki/Music_Player_Daemon_Wiki;

pkgs/tools/inputmethods/fcitx/default.nix

@@ -1,18 +1,18 @@
 { stdenv, fetchurl, pkgconfig, cmake, intltool, gettext
 , libxml2, enchant, isocodes, icu, libpthreadstubs
-, pango, cairo, libxkbfile, xorg
+, pango, cairo, libxkbfile, libXau, libXdmcp
 }:
 
 stdenv.mkDerivation rec {
-  name = "fcitx-4.2.7";
+  name = "fcitx-4.2.8.3";
   src = fetchurl {
-    url = "https://fcitx.googlecode.com/files/${name}_dict.tar.xz";
+    url = "http://download.fcitx-im.org/fcitx/${name}_dict.tar.xz";
-    sha256 = "1dfvr77j9vnlg76155clrjxnm59r5fzv0d3n6c6yn10zb0bjd40c";
+    sha256 = "05dw6cbjh2jyjrkr4qx2bcq6nyhhrs0akf6fcjk5a72bgphhwqnb";
   };
 
   buildInputs = [
     cmake enchant pango gettext libxml2 isocodes pkgconfig libxkbfile
-    intltool cairo icu libpthreadstubs xorg.libXau xorg.libXdmcp
+    intltool cairo icu libpthreadstubs libXau libXdmcp
   ];
 
   cmakeFlags = ''
@@ -28,5 +28,7 @@ stdenv.mkDerivation rec {
     homepage = "https://code.google.com/p/fcitx/";
     description = "A Flexible Input Method Framework";
     license = "GPLv2";
+    platforms = stdenv.lib.platforms.linux;
+    maintainers = with stdenv.lib.maintainers; [iyzsong];
   };
 }

pkgs/tools/misc/screen/default.nix

@@ -22,7 +22,8 @@ stdenv.mkDerivation rec {
 
   meta = {
     homepage = http://www.gnu.org/software/screen/;
-    description = "GNU Screen, a window manager that multiplexes a physical terminal";
+    description = "a window manager that multiplexes a physical terminal";
+    license = stdenv.lib.licenses.gpl2Plus;
 
     longDescription =
       '' GNU Screen is a full-screen window manager that multiplexes a physical
@@ -46,8 +47,6 @@ stdenv.mkDerivation rec {
          terminal.
       '';
 
-    license = stdenv.lib.licenses.gpl2Plus;
-
     platforms = stdenv.lib.platforms.unix;
     maintainers = [ stdenv.lib.maintainers.simons ];
   };

pkgs/top-level/all-packages.nix

@@ -5975,6 +5975,14 @@ let
 
   ZopeInterface = pythonPackages.zope_interface;
 
+  ### DEVELOPMENT / R MODULES
+
+  buildRPackage = import ../development/r-modules/generic R;
+
+  rPackages = recurseIntoAttrs (import ./r-packages.nix {
+    inherit pkgs;
+    __overrides = (config.rPackageOverrides or (p: {})) pkgs;
+  });
 
   ### SERVERS
 
@@ -7241,6 +7249,8 @@ let
 
   arora = callPackage ../applications/networking/browsers/arora { };
 
+  aseprite = callPackage ../applications/editors/aseprite { };
+
   audacious = callPackage ../applications/audio/audacious { };
 
   audacity = callPackage ../applications/audio/audacity { };
@@ -8201,6 +8211,8 @@ let
   mpg123 = callPackage ../applications/audio/mpg123 { };
 
   mpg321 = callPackage ../applications/audio/mpg321 { };
+  
+  mpc_cli = callPackage ../applications/audio/mpc { };
 
   ncmpcpp = callPackage ../applications/audio/ncmpcpp { };
 
@@ -8460,6 +8472,8 @@ let
     enableCopyDevicesPatch = (config.rsync.enableCopyDevicesPatch or false);
   };
 
+  rubyripper = callPackage ../applications/audio/rubyripper {};
+
   rxvt = callPackage ../applications/misc/rxvt { };
 
   # = urxvt

pkgs/top-level/haskell-packages.nix

@@ -170,14 +170,14 @@ let result = let callPackage = x : y : modifyPrio (newScope result.finalReturn x
     text         = self.text_0_11_3_1;
     transformers = null;                        # this has become a core package in GHC 7.7
     unorderedContainers = self.unorderedContainers_0_2_3_3;
-    vector       = self.vector_0_10_0_1;
+    vector       = self.vector_0_10_9_1;
     xhtml        = self.xhtml_3000_2_1;
     zlib         = self.zlib_0_5_4_1;
     cabalInstall = self.cabalInstall_1_18_0_1;
     alex         = self.alex_3_1_0;
     haddock      = self.haddock_2_13_2;
     happy        = self.happy_1_19_0;
-    primitive    = self.primitive_0_5_0_1;      # semi-official, but specified
+    primitive    = self.primitive_0_5_1_0;      # semi-official, but specified
   };
 
   haskellPlatformArgs_2013_2_0_0 = self : {
@@ -1490,6 +1490,8 @@ let result = let callPackage = x : y : modifyPrio (newScope result.finalReturn x
 
   mongoDB = callPackage ../development/libraries/haskell/mongoDB {};
 
+  monoTraversable = callPackage ../development/libraries/haskell/mono-traversable {};
+
   mmorph = callPackage ../development/libraries/haskell/mmorph {};
 
   mpppc = callPackage ../development/libraries/haskell/mpppc {};
@@ -1711,7 +1713,8 @@ let result = let callPackage = x : y : modifyPrio (newScope result.finalReturn x
   punycode = callPackage ../development/libraries/haskell/punycode {};
 
   primitive_0_5_0_1 = callPackage ../development/libraries/haskell/primitive/0.5.0.1.nix   {};
-  primitive = self.primitive_0_5_0_1;
+  primitive_0_5_1_0 = callPackage ../development/libraries/haskell/primitive/0.5.1.0.nix   {};
+  primitive = self.primitive_0_5_1_0;
 
   profunctors = callPackage ../development/libraries/haskell/profunctors {};
 
@@ -2170,12 +2173,15 @@ let result = let callPackage = x : y : modifyPrio (newScope result.finalReturn x
   vect = callPackage ../development/libraries/haskell/vect {};
 
   vector_0_10_0_1  = callPackage ../development/libraries/haskell/vector/0.10.0.1.nix  {};
-  vector = self.vector_0_10_0_1;
+  vector_0_10_9_1  = callPackage ../development/libraries/haskell/vector/0.10.9.1.nix  {};
+  vector = self.vector_0_10_9_1;
 
   vectorAlgorithms = callPackage ../development/libraries/haskell/vector-algorithms {};
 
   vectorBinaryInstances = callPackage ../development/libraries/haskell/vector-binary-instances {};
 
+  vectorInstances = callPackage ../development/libraries/haskell/vector-instances {};
+
   vectorSpace = callPackage ../development/libraries/haskell/vector-space {};
 
   vectorSpacePoints = callPackage ../development/libraries/haskell/vector-space-points {};

pkgs/top-level/r-packages.nix

@@ -0,0 +1,246 @@
+/* This file defines the composition for CRAN (R) packages. */
+
+{pkgs, __overrides}:
+
+rec {
+
+  inherit (pkgs) buildRPackage fetchurl stdenv R;
+
+  inherit (stdenv.lib) maintainers;
+
+  inherit __overrides;
+
+  abind = buildRPackage rec {
+    name = "abind-1.4-0";
+    src = fetchurl {
+      url = "mirror://cran/src/contrib/abind_1.4-0.tar.gz";
+      sha256 = "1b9634bf6ad68022338d71a23a689f1af4afd9d6c12c0b982b88fc21363ff568";
+    };
+  };
+
+  chron = buildRPackage rec {
+    name = "chron-2.3-44";
+    src = fetchurl {
+      url = "mirror://cran/src/contrib/chron_2.3-44.tar.gz";
+      sha256 = "ba7d46223e615b4d09145a364a4c37ccff718384486ca154a6e025cf3ed91148";
+    };
+  };
+
+  colorspace = buildRPackage rec {
+    name = "colorspace-1.2-2";
+    src = fetchurl {
+      url = "mirror://cran/src/contrib/colorspace_1.2-2.tar.gz";
+      sha256 = "7f6ca98e5d005bc7d6e37b03577d65995809150d1d293ce68b6720e7a6b2054d";
+    };
+  };
+
+  DBI = buildRPackage rec {
+    name = "DBI-0.2-7";
+    src = fetchurl {
+      url = "mirror://cran/src/contrib/DBI_0.2-7.tar.gz";
+      sha256 = "e90a988740f99060d5c4aacb1f2b148b0eb81c5b468bafeadf3aaeccf563b5e3";
+    };
+  };
+
+  dichromat = buildRPackage rec {
+    name = "dichromat-2.0-0";
+    src = fetchurl {
+      url = "mirror://cran/src/contrib/dichromat_2.0-0.tar.gz";
+      sha256 = "31151eaf36f70bdc1172da5ff5088ee51cc0a3db4ead59c7c38c25316d580dd1";
+    };
+  };
+
+  digest = buildRPackage rec {
+    name = "digest-0.6.3";
+    src = fetchurl {
+      url = "mirror://cran/src/contrib/digest_0.6.3.tar.gz";
+      sha256 = "5be8f1386c0c273fcc915df7b557393c5f3de43c44fd16614db9cc5ba6d1d57c";
+    };
+  };
+
+  ggplot2 = buildRPackage rec {
+    name = "ggplot2-0.9.3.1";
+    src = fetchurl {
+      url = "mirror://cran/src/contrib/ggplot2_0.9.3.1.tar.gz";
+      sha256 = "b4c97404fd44571f9980712af963949ed204b5d4e639d97df9ba9a17423a6601";
+    };
+    propagatedBuildInputs = [ digest plyr gtable reshape2 scales proto ];
+  };
+
+  gtable = buildRPackage rec {
+    name = "gtable-0.1.2";
+    src = fetchurl {
+      url = "mirror://cran/src/contrib/gtable_0.1.2.tar.gz";
+      sha256 = "b08ba8e62e0ce05e7a4c07ba3ffa67719161db62438b04f14343f8928d74304d";
+    };
+  };
+
+  gtools = buildRPackage rec {
+    name = "gtools-3.0.0";
+    src = fetchurl {
+      url = "mirror://cran/src/contrib/gtools_3.0.0.tar.gz";
+      sha256 = "e35f08ac9df875b57dcf23028baa226372d7482d7814a011f9b1fdd0697ee73c";
+    };
+  };
+
+  gsubfn = buildRPackage rec {
+    name = "gsubfn-0.6-5";
+    src = fetchurl {
+      url = "mirror://cran/src/contrib/gsubfn_0.6-5.tar.gz";
+      sha256 = "9a7b51ae6aabd1c99e8633d3dc75232d8c4a175df750c7d1c359bd0f5fc197be";
+    };
+    propagatedBuildInputs = [ proto ];
+  };
+
+  labeling = buildRPackage rec {
+    name = "labeling-0.2";
+    src = fetchurl {
+      url = "mirror://cran/src/contrib/labeling_0.2.tar.gz";
+      sha256 = "8aaa7f8b91923088da4e47ae42620fadcff7f2bc566064c63d138e2145e38aa4";
+    };
+  };
+
+  lars = buildRPackage rec {
+    name = "lars-1.2";
+    src = fetchurl {
+      url = "mirror://cran/src/contrib/lars_1.2.tar.gz";
+      sha256 = "64745b568f20b2cfdae3dad02fba92ebf78ffee466a71aaaafd4f48c3921922e";
+    };
+  };
+
+  LiblineaR = buildRPackage rec {
+    name = "LiblineaR-1.80-7";
+    src = fetchurl {
+      url = "mirror://cran/src/contrib/LiblineaR_1.80-7.tar.gz";
+      sha256 = "9ba0280c5165bf0bbd46cb5ec7c66fdece38fc3f73fce2ec800763923ae8e4bd";
+    };
+  };
+
+  linprog = buildRPackage rec {
+    name = "linprog-0.9-2";
+    src = fetchurl {
+      url = "mirror://cran/src/contrib/linprog_0.9-2.tar.gz";
+      sha256 = "8937b2e30692e38de1713f1513b78f505f73da6f5b4a576d151ad60bac2221ce";
+    };
+    propagatedBuildInputs = [ lpSolve ];
+  };
+
+  lpSolve = buildRPackage rec {
+    name = "lpSolve-5.6.7";
+    src = fetchurl {
+      url = "mirror://cran/src/contrib/lpSolve_5.6.7.tar.gz";
+      sha256 = "16def9237f38c4d7a59651173fd87df3cd3c563f640c6952e13bdd2a084737ef";
+    };
+  };
+
+  munsell = buildRPackage rec {
+    name = "munsell-0.4.2";
+    src = fetchurl {
+      url = "mirror://cran/src/contrib/munsell_0.4.2.tar.gz";
+      sha256 = "84e787f58f626c52a1e3fc1201f724835dfa8023358bfed742e7001441f425ae";
+    };
+    propagatedBuildInputs = [ colorspace ];
+  };
+
+  pamr = buildRPackage rec {
+    name = "pamr-1.54.1";
+    src = fetchurl {
+      url = "mirror://cran/src/contrib/pamr_1.54.1.tar.gz";
+      sha256 = "139dbc39b4eccd6a55b6a3c42a1c8be61dcce0613535a634c3e42731fc315516";
+    };
+  };
+
+  penalized = buildRPackage rec {
+    name = "penalized-0.9-42";
+    src = fetchurl {
+      url = "mirror://cran/src/contrib/penalized_0.9-42.tar.gz";
+      sha256 = "98e8e39b02ecbabaa7050211e34941c73e1e687f39250cf3cbacb7c5dcbb1e98";
+    };
+  };
+
+  plyr = buildRPackage rec {
+    name = "plyr-1.8";
+    src = fetchurl {
+      url = "mirror://cran/src/contrib/plyr_1.8.tar.gz";
+      sha256 = "0bd6861af241e6c5ce777ef3f1b0eb72b31cc026669a68f6250b8ecfadf71a66";
+    };
+  };
+
+  proto = buildRPackage rec {
+    name = "proto-0.3-10";
+    src = fetchurl {
+      url = "mirror://cran/src/contrib/proto_0.3-10.tar.gz";
+      sha256 = "d0d941bfbf247879b3510c8ef3e35853b1fbe83ff3ce952e93d3f8244afcbb0e";
+    };
+  };
+
+  randomForest = buildRPackage rec {
+    name = "randomForest-4.6-7";
+    src = fetchurl {
+      url = "mirror://cran/src/contrib/randomForest_4.6-7.tar.gz";
+      sha256 = "8206e88b242c07efc10f148d17dfcc265a31361e1bcf44bfe17aed95c357be0b";
+    };
+    propagatedBuildInputs = [ plyr stringr ];
+  };
+
+  reshape2 = buildRPackage rec {
+    name = "reshape2-1.2.2";
+    src = fetchurl {
+      url = "mirror://cran/src/contrib/reshape2_1.2.2.tar.gz";
+      sha256 = "9131025b8f684e1629ab3e2748d4cf2b907b7c89cfbff667c925bc0fb5dfc103";
+    };
+    propagatedBuildInputs = [ plyr stringr ];
+  };
+
+  RColorBrewer = buildRPackage rec {
+    name = "RColorBrewer-1.0-5";
+    src = fetchurl {
+      url = "mirror://cran/src/contrib/RColorBrewer_1.0-5.tar.gz";
+      sha256 = "5ac1c44c1a53f9521134e7ed7c148c72e49271cbd229c5263d2d7fd91c8b8e78";
+    };
+  };
+
+  RSQLite = buildRPackage rec {
+    name = "RSQlite-0.11.4";
+    src = fetchurl {
+      url = "mirror://cran/src/contrib/RSQLite_0.11.4.tar.gz";
+      sha256 = "bba0cbf2a1a3120d667a731da1ca5b9bd4db23b813e1abf6f51fb01540c2000c";
+    };
+    propagatedBuildInputs = [ DBI ];
+  };
+
+  RSQLiteExtfuns = buildRPackage rec {
+    name = "RSQlite.extfuns-0.0.1";
+    src = fetchurl {
+      url = "mirror://cran/src/contrib/RSQLite.extfuns_0.0.1.tar.gz";
+      sha256 = "ca5c7947c041e17ba83bed3f5866f7eeb9b7f361e5c050c9b58eec5670f03d0e";
+    };
+    propagatedBuildInputs = [ RSQLite ];
+  };
+
+  scales = buildRPackage rec {
+    name = "scales-0.2.3";
+    src = fetchurl {
+      url = "mirror://cran/src/contrib/scales_0.2.3.tar.gz";
+      sha256 = "46aef8eb261abc39f87b71184e5484bc8c2c94e01d3714ce4b2fd60727bc40d9";
+    };
+    propagatedBuildInputs = [ RColorBrewer stringr dichromat munsell plyr labeling ];
+  };
+
+  stringr = buildRPackage rec {
+    name = "stringr-0.6.2";
+    src = fetchurl {
+      url = "mirror://cran/src/contrib/stringr_0.6.2.tar.gz";
+      sha256 = "c3fc9c71d060ad592d2cfc51c36ab2f8e5f8cf9a25dfe42c637447dd416b6737";
+    };
+  };
+
+  sqldf = buildRPackage rec {
+    name = "sqldf-0.4-6.4";
+    src = fetchurl {
+      url = "mirror://cran/src/contrib/sqldf_0.4-6.4.tar.gz";
+      sha256 = "6c51e4e48b93310f765c661a1756fe068629da775248d38a98c38f5b6f7511c4";
+    };
+    propagatedBuildInputs = [ DBI gsubfn proto chron RSQLite RSQLiteExtfuns ];
+  };
+}