From f1ca7eecbb1346bb67741850b359ea0778fcddab Mon Sep 17 00:00:00 2001
From: ajs124 <git@ajs124.de>
Date: Mon, 13 Jun 2022 02:39:32 +0200
Subject: [PATCH] avogadro: remove

---
 .../science/chemistry/avogadro/default.nix    | 30 -------------------
 pkgs/top-level/aliases.nix                    |  1 +
 pkgs/top-level/all-packages.nix               |  5 ----
 3 files changed, 1 insertion(+), 35 deletions(-)
 delete mode 100644 pkgs/applications/science/chemistry/avogadro/default.nix

diff --git a/pkgs/applications/science/chemistry/avogadro/default.nix b/pkgs/applications/science/chemistry/avogadro/default.nix
deleted file mode 100644
index 547123b67957..000000000000
--- a/pkgs/applications/science/chemistry/avogadro/default.nix
+++ /dev/null
@@ -1,30 +0,0 @@
-{ lib, stdenv, fetchurl, cmake, qt4, zlib, eigen, openbabel, pkg-config, libGLU, libGL, libX11, doxygen }:
-
-stdenv.mkDerivation rec {
-  pname = "avogadro";
-  version = "1.1.1";
-
-  src = fetchurl {
-    url = "mirror://sourceforge/avogadro/avogadro-${version}.tar.bz2";
-    sha256 = "050ag9p4vg7jg8hj1wqfv7lsm6ar2isxjw2vw85s49vsl7g7nvzy";
-  };
-
-  buildInputs = [ qt4 eigen zlib openbabel libGL libGLU libX11 ];
-
-  nativeBuildInputs = [ cmake pkg-config doxygen ];
-
-  env.NIX_CFLAGS_COMPILE = "-include ${libGLU.dev}/include/GL/glu.h";
-
-  patches = [
-    (fetchurl {
-      url = "https://data.gpo.zugaina.org/fusion809/sci-chemistry/avogadro/files/avogadro-1.1.0-xlibs.patch";
-      sha256 = "1p113v19z3zwr9gxj2k599f8p97a8rwm93pa4amqvd0snn31mw0k";
-    })
-  ];
-
-  meta = with lib; {
-    description = "Molecule editor and visualizer";
-    maintainers = with maintainers; [ danielbarter ];
-    platforms = platforms.mesaPlatforms;
-  };
-}
diff --git a/pkgs/top-level/aliases.nix b/pkgs/top-level/aliases.nix
index ecbfa2b241c1..2357cd0fe3fa 100644
--- a/pkgs/top-level/aliases.nix
+++ b/pkgs/top-level/aliases.nix
@@ -114,6 +114,7 @@ mapAliases ({
   audacity-gtk3 = throw "'audacity-gtk3' has been removed to/replaced by 'audacity'"; # Added 2022-10-09
   automoc4 = throw "automoc4 has been removed from nixpkgs"; # Added 2022-05-30
   avldrums-lv2 = x42-avldrums; # Added 2020-03-29
+  avogadro = throw "avogadro has been removed, because it depended on qt4"; # Added 2022-06-12
   avxsynth = throw "avxsynth was removed because it was broken"; # Added 2021-05-18
   awesome-4-0 = awesome; # Added 2022-05-05
   aws = throw "aws has been removed: abandoned by upstream. For the AWS CLI maintained by Amazon, see 'awscli' or 'awscli2'"; # Added 2022-09-21
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index bec66519ae1d..622cded6a878 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -38926,11 +38926,6 @@ with pkgs;
 
   apbs = callPackage ../applications/science/chemistry/apbs { };
 
-  avogadro = callPackage ../applications/science/chemistry/avogadro {
-    openbabel = openbabel2;
-    eigen = eigen2;
-  };
-
   avogadrolibs = libsForQt5.callPackage ../development/libraries/science/chemistry/avogadrolibs { };
 
   molequeue = libsForQt5.callPackage ../development/libraries/science/chemistry/molequeue { };