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ezminc: unstable-2019-03-12 -> unstable-2023-10-06; unbreak (#342963)

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Peder Bergebakken Sundt 2024-10-02 01:30:10 +02:00 committed by GitHub
commit c1d784a832
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1 changed files with 50 additions and 20 deletions
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70
pkgs/applications/science/biology/EZminc/default.nix
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@ -1,30 +1,60 @@
{ lib, stdenv, fetchFromGitHub, cmake, pkg-config, libminc, bicpl, itk, fftwFloat, gsl }:
{
lib,
stdenv,
fetchFromGitHub,
cmake,
pkg-config,
perl,
libminc,
bicpl,
itk_5_2,
fftwFloat,
gsl,
}:
stdenv.mkDerivation rec {
stdenv.mkDerivation (finalAttrs: {
pname = "EZminc";
version = "unstable-2019-03-12";
version = "2.2.00-unstable-2023-10-06";
src = fetchFromGitHub {
owner = "BIC-MNI";
repo = pname;
rev = "5e3333ee356f914d34d66d33ea8df809c7f7fa51";
sha256 = "0wy8cppf5xpgfqvgb3mqs1cjh81n6qzkk6zxv29wvng8nar9wsy4";
owner = "BIC-MNI";
repo = "EZminc";
rev = "5fdf112e837000d155891e423041d7065ea13c3f";
hash = "sha256-0KdFIWRHnIHrau0ysGMVpg3oz01UdIvna1y2I4YEWJw=";
};
nativeBuildInputs = [ cmake pkg-config ];
buildInputs = [ itk libminc bicpl fftwFloat gsl ];
postPatch = ''
patchShebangs scripts/*
'';
cmakeFlags = [ "-DLIBMINC_DIR=${libminc}/lib/cmake"
"-DEZMINC_BUILD_TOOLS=TRUE"
"-DEZMINC_BUILD_MRFSEG=TRUE"
"-DEZMINC_BUILD_DD=TRUE" ];
nativeBuildInputs = [
cmake
pkg-config
];
meta = with lib; {
homepage = "https://github.com/BIC-MNI/${pname}";
buildInputs = [
itk_5_2
libminc
bicpl
fftwFloat
gsl
perl
];
cmakeFlags = [
"-DLIBMINC_DIR=${libminc}/lib/cmake"
"-DEZMINC_BUILD_TOOLS=TRUE"
"-DEZMINC_BUILD_MRFSEG=TRUE"
# "-DEZMINC_BUILD_DD=TRUE" # numerous compilation issues
];
doCheck = false; # test programs/data exist but no actual test harness
meta = {
homepage = "https://github.com/BIC-MNI/EZminc";
description = "Collection of Perl and shell scripts for processing MINC files";
maintainers = with maintainers; [ bcdarwin ];
platforms = platforms.unix;
license = licenses.free;
broken = true; # ITK5 compatibility issue (https://github.com/BIC-MNI/EZminc/issues/15)
maintainers = with lib.maintainers; [ bcdarwin ];
platforms = lib.platforms.linux; # can't detect opengl on Darwin
license = lib.licenses.free;
};
}
})