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Merge pull request #273382 from wegank/strelka-aarch64

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strelka: add aarch64-linux support
This commit is contained in:
Weijia Wang 2023-12-12 01:51:59 +01:00 committed by GitHub
commit 9a67c36f6d
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GPG Key ID: 4AEE18F83AFDEB23
2 changed files with 24 additions and 4 deletions
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26
pkgs/applications/science/biology/strelka/default.nix
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@ -1,4 +1,4 @@
{lib, stdenv, fetchFromGitHub, cmake, zlib, python2}:
{lib, stdenv, fetchFromGitHub, fetchpatch, cmake, boost, zlib, python2}:
stdenv.mkDerivation rec {
pname = "strelka";
@ -11,8 +11,28 @@ stdenv.mkDerivation rec {
sha256 = "1nykbmim1124xh22nrhrsn8xgjb3s2y7akrdapn9sl1gdych4ppf";
};
patches = [
# Pull pending fix for gcc-12:
# https://github.com/Illumina/strelka/pull/204
(fetchpatch {
name = "limits.patch";
url = "https://github.com/Illumina/strelka/commit/98272cd345c6e4c672e6a5b7721204fcac0502d6.patch";
hash = "sha256-psBiuN32nvwZ+QX51JQjIdRhEE3k7PfwbkD10ckqvZk=";
})
];
postPatch = ''
substituteInPlace src/cmake/boost.cmake \
--replace "1.58.0" "${boost.version}" \
--replace "Boost_USE_STATIC_LIBS ON" "Boost_USE_STATIC_LIBS OFF"
'';
nativeBuildInputs = [ cmake ];
buildInputs = [ zlib python2 ];
buildInputs = [ boost zlib python2 ];
cmakeFlags = [
"-DCMAKE_CXX_STANDARD=14"
];
env.NIX_CFLAGS_COMPILE = toString [
"-Wno-error=maybe-uninitialized"
@ -37,7 +57,7 @@ stdenv.mkDerivation rec {
license = licenses.gpl3;
homepage = "https://github.com/Illumina/strelka";
maintainers = with maintainers; [ jbedo ];
platforms = [ "x86_64-linux" ];
platforms = platforms.linux;
};
}

2
pkgs/top-level/all-packages.nix
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@ -39116,7 +39116,7 @@ with pkgs;
star = callPackage ../applications/science/biology/star { };
strelka = callPackage ../applications/science/biology/strelka { stdenv = gcc10StdenvCompat; };
strelka = callPackage ../applications/science/biology/strelka { };
inherit (callPackages ../applications/science/biology/sumatools {})
sumalibs