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ecopcr: init at 0.8.0

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Celine Mercier 2017-02-03 16:10:28 +01:00 committed by Robert Helgesson
parent 0d422c5db5
commit 78c052e91a
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3 changed files with 40 additions and 0 deletions
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1
lib/maintainers.nix
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@ -297,6 +297,7 @@
mdaiter = "Matthew S. Daiter <mdaiter8121@gmail.com>";
meditans = "Carlo Nucera <meditans@gmail.com>";
meisternu = "Matt Miemiec <meister@krutt.org>";
metabar = "Celine Mercier <softs@metabarcoding.org>";
mguentner = "Maximilian Güntner <code@klandest.in>";
mic92 = "Jörg Thalheim <joerg@higgsboson.tk>";
michaelpj = "Michael Peyton Jones <michaelpj@gmail.com>";

37
pkgs/applications/science/biology/ecopcr/default.nix Normal file
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@ -0,0 +1,37 @@
{ stdenv, fetchurl, gcc, zlib, python27 }:
stdenv.mkDerivation rec {
name = "ecopcr-0.8.0";
src = fetchurl {
url = "https://git.metabarcoding.org/obitools/ecopcr/uploads/6f37991b325c8c171df7e79e6ae8d080/${name}.tar.gz";
sha256 = "10c58hj25z78jh0g3zcbx4890yd2qrvaaanyx8mn9p49mmyf5pk6";
};
sourceRoot = "ecoPCR/src";
buildInputs = [ gcc python27 zlib ];
installPhase = ''
mkdir -p $out/bin
cp -v ecoPCR $out/bin
cp -v ecogrep $out/bin
cp -v ecofind $out/bin
cp -v ../tools/ecoPCRFormat.py $out/bin/ecoPCRFormat
chmod a+x $out/bin/ecoPCRFormat
'';
meta = with stdenv.lib; {
description = "Electronic PCR software tool";
longDescription = ''
ecoPCR is an electronic PCR software developed by the LECA. It
helps you estimate Barcode primers quality. In conjunction with
OBITools, you can postprocess ecoPCR output to compute barcode
coverage and barcode specificity. New barcode primers can be
developed using the ecoPrimers software.
'';
homepage = https://git.metabarcoding.org/obitools/ecopcr/wikis/home;
license = licenses.cecill20;
maintainers = [ maintainers.metabar ];
};
}

2
pkgs/top-level/all-packages.nix
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@ -16835,6 +16835,8 @@ with pkgs;
bcftools = callPackage ../applications/science/biology/bcftools { };
ecopcr = callPackage ../applications/science/biology/ecopcr { };
emboss = callPackage ../applications/science/biology/emboss { };
htslib = callPackage ../development/libraries/science/biology/htslib { };