diff --git a/pkgs/applications/science/misc/cytoscape/default.nix b/pkgs/applications/science/misc/cytoscape/default.nix
index 3ab7d57f95a3..783381f9db03 100644
--- a/pkgs/applications/science/misc/cytoscape/default.nix
+++ b/pkgs/applications/science/misc/cytoscape/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "cytoscape";
-  version = "3.8.2";
+  version = "3.9.0";
 
   src = fetchurl {
     url = "https://github.com/cytoscape/cytoscape/releases/download/${version}/${pname}-unix-${version}.tar.gz";
-    sha256 = "0zgsq9qnyvmq96pgf7372r16rm034fd0r4qa72xi9zbd4f2r7z8w";
+    sha256 = "sha256-7YDmojzQujHrsDuB7WC0C3Z2srTd9QUveh1baod3KvU=";
   };
 
   patches = [