From 5a5cb718a590fddd8d982bef9d9c41f9187a4f68 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Thu, 25 Mar 2021 10:42:32 +0100
Subject: [PATCH] bedtools: use python3

---
 pkgs/applications/science/biology/bedtools/default.nix | 10 ++++++++--
 1 file changed, 8 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/science/biology/bedtools/default.nix b/pkgs/applications/science/biology/bedtools/default.nix
index d0553bb0649a..f5aad5d05543 100644
--- a/pkgs/applications/science/biology/bedtools/default.nix
+++ b/pkgs/applications/science/biology/bedtools/default.nix
@@ -1,4 +1,4 @@
-{lib, stdenv, fetchFromGitHub, zlib, python, bzip2, lzma}:
+{lib, stdenv, fetchFromGitHub, zlib, python3, bzip2, lzma}:
 
 stdenv.mkDerivation rec {
   pname = "bedtools";
@@ -11,7 +11,13 @@ stdenv.mkDerivation rec {
     sha256 = "sha256-NqKldF7ePJn3pT+AkESIQghBKSFFOEBBsTaKEbU+oaQ=";
   };
 
-  buildInputs = [ zlib python bzip2 lzma ];
+  strictDeps = true;
+
+  nativeBuildInputs = [
+    python3
+  ];
+
+  buildInputs = [ zlib bzip2 lzma ];
   cxx = if stdenv.cc.isClang then "clang++" else "g++";
   cc = if stdenv.cc.isClang then "clang" else "gcc";
   buildPhase = "make prefix=$out SHELL=${stdenv.shell} CXX=${cxx} CC=${cc} -j $NIX_BUILD_CORES";