From 544465ef9820c0a0569a675265a0bd05f899a158 Mon Sep 17 00:00:00 2001
From: Mauricio Collares <mauricio@collares.org>
Date: Mon, 27 May 2024 11:42:55 +0200
Subject: [PATCH] sageWithDoc: add sphinx 7.3 update patch

---
 pkgs/applications/science/math/sage/sage-src.nix | 11 +++++++++--
 pkgs/applications/science/math/sage/sagedoc.nix  |  4 ----
 2 files changed, 9 insertions(+), 6 deletions(-)

diff --git a/pkgs/applications/science/math/sage/sage-src.nix b/pkgs/applications/science/math/sage/sage-src.nix
index b1c9c62a5748..de0c2e3b1e20 100644
--- a/pkgs/applications/science/math/sage/sage-src.nix
+++ b/pkgs/applications/science/math/sage/sage-src.nix
@@ -61,12 +61,19 @@ stdenv.mkDerivation rec {
       hash = "sha256-uCXchYx26DdxTjR1k2748KCEHPnekKS2fAM7SpyhNvM=";
     })
 
-    # https://github.com/sagemath/sage/pull/37763
+    # https://github.com/sagemath/sage/pull/37763, landed in 10.4.beta2
     (fetchpatch {
       name = "scipy-fault-tolerance.patch";
-      url = "https://github.com/sagemath/sage/commit/547d502ed56f9fd44eb5d9b4ee0824746c60fef7.diff";
+      url = "https://github.com/sagemath/sage/commit/551139c09f26a5da96b1187c3f0dd17b8d80ef84.diff";
       hash = "sha256-PR4przrZ3ieHaW2nSY7l7VhNfrUupu9yCIrXpeyoAgg=";
     })
+
+    # first two commits from https://github.com/sagemath/sage/pull/38100
+    (fetchpatch {
+      name = "sphinx-7.3-update.patch";
+      url = "https://github.com/sagemath/sage/compare/10.4.beta7...d2932e142991b442a3eee5dc4f8949e3f7e6fe5c.patch";
+      hash = "sha256-g6w0ImE0d2ocKnbGMQikcz9eI9r3/gESlA1NrQfGimk=";
+    })
   ];
 
   # Patches needed because of package updates. We could just pin the versions of
diff --git a/pkgs/applications/science/math/sage/sagedoc.nix b/pkgs/applications/science/math/sage/sagedoc.nix
index 5e2191486bf0..cbf593398ac4 100644
--- a/pkgs/applications/science/math/sage/sagedoc.nix
+++ b/pkgs/applications/science/math/sage/sagedoc.nix
@@ -24,10 +24,6 @@ stdenv.mkDerivation rec {
     export HOME="$TMPDIR/sage_home"
     mkdir -p "$HOME"
 
-    # adapted from src/doc/Makefile (doc-src target), which tries to call Sage from PATH
-    mkdir -p $SAGE_DOC_SRC_OVERRIDE/en/reference/repl
-    ${sage-with-env}/bin/sage -advanced > $SAGE_DOC_SRC_OVERRIDE/en/reference/repl/options.txt
-
     # needed to link them in the sage docs using intersphinx
     export PPLPY_DOCS=${python3.pkgs.pplpy.doc}/share/doc/pplpy