From b089c39a2364725a7331f8e9a3a5198fc3dc0ef8 Mon Sep 17 00:00:00 2001 From: "Dino A. Dai Zovi" Date: Sun, 11 Jul 2021 20:00:06 +0000 Subject: [PATCH 001/278] nixos/tests: update initrd-secrets test to test secret in /run/keys Since /run/keys is a ramfs, it is not paged out and a good place to copy secrets to. Test whether secrets with a path in /run/keys exist after initrd. --- nixos/tests/initrd-secrets.nix | 10 ++++++++-- 1 file changed, 8 insertions(+), 2 deletions(-) diff --git a/nixos/tests/initrd-secrets.nix b/nixos/tests/initrd-secrets.nix index 10dd908502d5..113a9cebf788 100644 --- a/nixos/tests/initrd-secrets.nix +++ b/nixos/tests/initrd-secrets.nix @@ -13,7 +13,12 @@ let machine = { ... }: { virtualisation.useBootLoader = true; - boot.initrd.secrets."/test" = secretInStore; + boot.initrd.secrets = { + "/test" = secretInStore; + + # This should *not* need to be copied in postMountCommands + "/run/keys/test" = secretInStore; + }; boot.initrd.postMountCommands = '' cp /test /mnt-root/secret-from-initramfs ''; @@ -26,7 +31,8 @@ let start_all() machine.wait_for_unit("multi-user.target") machine.succeed( - "cmp ${secretInStore} /secret-from-initramfs" + "cmp ${secretInStore} /secret-from-initramfs", + "cmp ${secretInStore} /run/keys/test", ) ''; }; From 30b97d7ccaf25324926301524d040c4524470046 Mon Sep 17 00:00:00 2001 From: "Dino A. Dai Zovi" Date: Mon, 5 Jul 2021 14:08:35 +0000 Subject: [PATCH 002/278] nixos/stage1: copy initrd secrets into place after special mounts This modifies initialRamdiskSecretAppender to stage secrets in /.initrd-secrets/ and stage-1-init to copy them into place after mounting special file systems. This allows secrets to be copied into ramfs mounts like /run/keys for use after stage-1 finishes without copying them to disk (which would not be very secure). --- nixos/modules/system/boot/stage-1-init.sh | 12 ++++++++++++ nixos/modules/system/boot/stage-1.nix | 4 ++-- 2 files changed, 14 insertions(+), 2 deletions(-) diff --git a/nixos/modules/system/boot/stage-1-init.sh b/nixos/modules/system/boot/stage-1-init.sh index ddaf985878e0..82e39c96fac2 100644 --- a/nixos/modules/system/boot/stage-1-init.sh +++ b/nixos/modules/system/boot/stage-1-init.sh @@ -119,6 +119,18 @@ specialMount() { } source @earlyMountScript@ +# Copy initrd secrets from /.initrd-secrets to their actual destinations +if [ -d "/.initrd-secrets" ]; then + # + # Secrets are named by their full destination pathname and stored + # under /.initrd-secrets/ + # + for secret in $(cd "/.initrd-secrets"; find . -type f); do + mkdir -p $(dirname "/$secret") + cp "/.initrd-secrets/$secret" "$secret" + done +fi + # Log the script output to /dev/kmsg or /run/log/stage-1-init.log. mkdir -p /tmp mkfifo /tmp/stage-1-init.log.fifo diff --git a/nixos/modules/system/boot/stage-1.nix b/nixos/modules/system/boot/stage-1.nix index d606d473d91e..95c419deb701 100644 --- a/nixos/modules/system/boot/stage-1.nix +++ b/nixos/modules/system/boot/stage-1.nix @@ -380,8 +380,8 @@ let ${lib.concatStringsSep "\n" (mapAttrsToList (dest: source: let source' = if source == null then dest else toString source; in '' - mkdir -p $(dirname "$tmp/${dest}") - cp -a ${source'} "$tmp/${dest}" + mkdir -p $(dirname "$tmp/.initrd-secrets/${dest}") + cp -a ${source'} "$tmp/.initrd-secrets/${dest}" '' ) config.boot.initrd.secrets) } From e2c1e04a75fd81d20b2c08686d9483b126e3a4ea Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Sun, 7 Nov 2021 08:17:21 +1100 Subject: [PATCH 003/278] rPackages.HDF5Array: remove duplicate zlib dependency --- pkgs/development/r-modules/default.nix | 1 - 1 file changed, 1 deletion(-) diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index f48d41e25f2b..c697384707ed 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -309,7 +309,6 @@ let gert = [ pkgs.libgit2 ]; haven = with pkgs; [ libiconv zlib.dev ]; h5vc = [ pkgs.zlib.dev ]; - HDF5Array = [ pkgs.zlib.dev ]; HiCseg = [ pkgs.gsl ]; imager = [ pkgs.x11 ]; iBMQ = [ pkgs.gsl ]; From 20de18c0a660865ec92d13369362be82438106c9 Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Sun, 7 Nov 2021 08:28:17 +1100 Subject: [PATCH 004/278] rPackages: CRAN and BioC update --- .../r-modules/bioc-annotation-packages.nix | 364 ++++++------- .../r-modules/bioc-experiment-packages.nix | 120 ++--- pkgs/development/r-modules/bioc-packages.nix | 44 +- pkgs/development/r-modules/cran-packages.nix | 501 ++++++++++-------- 4 files changed, 540 insertions(+), 489 deletions(-) diff --git a/pkgs/development/r-modules/bioc-annotation-packages.nix b/pkgs/development/r-modules/bioc-annotation-packages.nix index dca3263dd41d..058456b56c70 100644 --- a/pkgs/development/r-modules/bioc-annotation-packages.nix +++ b/pkgs/development/r-modules/bioc-annotation-packages.nix @@ -120,9 +120,9 @@ in with self; { BSgenome_Vvinifera_URGI_IGGP12Xv2 = derive2 { name="BSgenome.Vvinifera.URGI.IGGP12Xv2"; version="0.1"; sha256="1saavsi75gw33jphhm3qb5psyfrv850ss4cmqr4i7aw1kc0fvs1j"; depends=[BSgenome]; }; BSgenome_Vvinifera_URGI_IGGP8X = derive2 { name="BSgenome.Vvinifera.URGI.IGGP8X"; version="0.1"; sha256="0v0hi2pbbi5ynd92bvbv4bzr7bgv48kvyz62hdv7k9gh7s5pg0id"; depends=[BSgenome]; }; CTCF = derive2 { name="CTCF"; version="0.99.4"; sha256="1xp10ra53s59nznnxlgw115j46yg5sy13z6wmhqzv6y789s3p49k"; depends=[]; }; - ChemmineDrugs = derive2 { name="ChemmineDrugs"; version="1.0.2"; sha256="0l47ac6lkycmghra2cbcdcxcv47ari8xg6lxpzilvkf4n6ld6064"; depends=[BiocGenerics ChemmineR RSQLite]; }; + ChemmineDrugs = derive2 { name="ChemmineDrugs"; version="1.0.2"; sha256="0l47ac6lkycmghra2cbcdcxcv47ari8xg6lxpzilvkf4n6ld6064"; depends=[BiocGenerics ChemmineR]; }; DO_db = derive2 { name="DO.db"; version="2.9"; sha256="10bqqa124l61ivzy4mdd3z3ar9a6537qbxw23pc4y9w8a6dwnavn"; depends=[AnnotationDbi]; }; - ENCODExplorerData = derive2 { name="ENCODExplorerData"; version="0.99.5"; sha256="00gfm5l8pxrfs4cw4jlw6n0cz5s31isg69k833n89800v26w3kvh"; depends=[data_table jsonlite RCurl]; }; + ENCODExplorerData = derive2 { name="ENCODExplorerData"; version="0.99.5"; sha256="00gfm5l8pxrfs4cw4jlw6n0cz5s31isg69k833n89800v26w3kvh"; depends=[]; }; EnsDb_Hsapiens_v75 = derive2 { name="EnsDb.Hsapiens.v75"; version="2.99.0"; sha256="0jx6rf6v0j8yr07q3c1h7s121901dc400nm6xaiv4i7kb5czjn9c"; depends=[ensembldb]; }; EnsDb_Hsapiens_v79 = derive2 { name="EnsDb.Hsapiens.v79"; version="2.99.0"; sha256="0k94iml0417m3k086d0bzd83fndyb2kn7pimsfzcdmafgy6sxwgg"; depends=[ensembldb]; }; EnsDb_Hsapiens_v86 = derive2 { name="EnsDb.Hsapiens.v86"; version="2.99.0"; sha256="1gp7xrzddpvmh2vrcp571wyy00skxgxfl39ksj4h0hm1qay0fb2m"; depends=[ensembldb]; }; @@ -133,7 +133,7 @@ in with self; { EpiTxDb_Hs_hg38 = derive2 { name="EpiTxDb.Hs.hg38"; version="0.99.7"; sha256="1vsi24q902wqlnbxp8hks03x53n4yh5cmpyyxdvmxfbn1rxfvnyf"; depends=[AnnotationHub EpiTxDb]; }; EpiTxDb_Mm_mm10 = derive2 { name="EpiTxDb.Mm.mm10"; version="0.99.6"; sha256="16zsqnrb3ypwv0sqfmhqmkxqhp90k21in7bjhjf0zagywsyyhpww"; depends=[AnnotationHub EpiTxDb]; }; EpiTxDb_Sc_sacCer3 = derive2 { name="EpiTxDb.Sc.sacCer3"; version="0.99.5"; sha256="0qlifdpppxxn2xmb0f1ghjbx47a7rrkrzr2lvky5p8lb0dnh3zxv"; depends=[AnnotationHub EpiTxDb]; }; - EuPathDB = derive2 { name="EuPathDB"; version="1.0.1"; sha256="0k23f34hnvcf2ig9sic7gf7pypc2jmwymg605qym7x32bjhi6rlm"; depends=[AnnotationHub AnnotationHubData Biobase BiocManager Biostrings GenomeInfoDbData GenomicRanges]; }; + EuPathDB = derive2 { name="EuPathDB"; version="1.0.1"; sha256="0k23f34hnvcf2ig9sic7gf7pypc2jmwymg605qym7x32bjhi6rlm"; depends=[AnnotationHub AnnotationHubData Biobase Biostrings GenomeInfoDbData GenomicRanges]; }; FDb_FANTOM4_promoters_hg19 = derive2 { name="FDb.FANTOM4.promoters.hg19"; version="1.0.0"; sha256="04sn5x1r5fcbghzw6n1bvy0z8zyhrbk86wsqz1p5gk665vicz8rw"; depends=[AnnotationDbi Biostrings GenomicFeatures]; }; FDb_InfiniumMethylation_hg18 = derive2 { name="FDb.InfiniumMethylation.hg18"; version="2.2.0"; sha256="0vwzqzj49imjdsn8ssiwqi7qic7rqw5pbsiinyxgy7y10fn2i42a"; depends=[AnnotationDbi Biostrings GenomicFeatures org_Hs_eg_db TxDb_Hsapiens_UCSC_hg18_knownGene]; }; FDb_InfiniumMethylation_hg19 = derive2 { name="FDb.InfiniumMethylation.hg19"; version="2.2.0"; sha256="0gq90fvph6kgrpjb89nvzq6hl1k24swn19rgjh5g98l86mja6nk0"; depends=[AnnotationDbi Biostrings GenomicFeatures org_Hs_eg_db TxDb_Hsapiens_UCSC_hg19_knownGene]; }; @@ -192,11 +192,11 @@ in with self; { Norway981_db = derive2 { name="Norway981.db"; version="3.2.3"; sha256="04ngc2hilqi9m7933mnm7jcvkxlz68vqqh5b628db575vcxql9b9"; depends=[AnnotationDbi org_Hs_eg_db]; }; OperonHumanV3_db = derive2 { name="OperonHumanV3.db"; version="3.2.3"; sha256="082gff88cwk2p50q8g9bixggacaclgqcvk6w5dc11h9fkgvd160i"; depends=[AnnotationDbi org_Hs_eg_db]; }; Orthology_eg_db = derive2 { name="Orthology.eg.db"; version="3.14.0"; sha256="0irfwj52dm2dqw0y7fpp2i3xxma347cz8s75r73dklgs1ra5rp3r"; depends=[AnnotationDbi]; }; - PANTHER_db = derive2 { name="PANTHER.db"; version="1.0.11"; sha256="0ckhrbhcxf7lq1hz1lrkrb7djjsfy7m0abf3665aagk6vvzigxy8"; depends=[AnnotationDbi AnnotationHub BiocFileCache RSQLite]; }; + PANTHER_db = derive2 { name="PANTHER.db"; version="1.0.11"; sha256="0ckhrbhcxf7lq1hz1lrkrb7djjsfy7m0abf3665aagk6vvzigxy8"; depends=[AnnotationDbi AnnotationHub BiocFileCache]; }; PFAM_db = derive2 { name="PFAM.db"; version="3.14.0"; sha256="05nnjar0nljpmzz99hssmfm16y7lyy8vf6ncw823vyg8g5893h95"; depends=[AnnotationDbi]; }; POCRCannotation_db = derive2 { name="POCRCannotation.db"; version="3.2.3"; sha256="0ybvs4hrxpivdkhm0fxpib11vlxqqdk8prlyj78vj5qzyb3iy89d"; depends=[AnnotationDbi org_Hs_eg_db]; }; PartheenMetaData_db = derive2 { name="PartheenMetaData.db"; version="3.2.3"; sha256="0d37c5b7s3fgkkvg7sj7gl9ksrjk5pyyv54vkys8w3qwgsm8yrdz"; depends=[AnnotationDbi org_Hs_eg_db]; }; - PolyPhen_Hsapiens_dbSNP131 = derive2 { name="PolyPhen.Hsapiens.dbSNP131"; version="1.0.2"; sha256="1kikygkli41sn3rqihz0924prmqg2264ifj29vmg1a7qccm0kf7c"; depends=[AnnotationDbi RSQLite VariantAnnotation]; }; + PolyPhen_Hsapiens_dbSNP131 = derive2 { name="PolyPhen.Hsapiens.dbSNP131"; version="1.0.2"; sha256="1kikygkli41sn3rqihz0924prmqg2264ifj29vmg1a7qccm0kf7c"; depends=[AnnotationDbi VariantAnnotation]; }; RaExExonProbesetLocation = derive2 { name="RaExExonProbesetLocation"; version="1.15.0"; sha256="1vvcc5zlpgbnqak4y2xywyd82j3s61wvhhp2ap0nni14sdxrl3hd"; depends=[AnnotationDbi]; }; Rattus_norvegicus = derive2 { name="Rattus.norvegicus"; version="1.3.1"; sha256="0bpd7i5jvl2jvf822mhxankx7cqqr4l70xp4f7hcknxw3lxia2f1"; depends=[AnnotationDbi GenomicFeatures GO_db org_Rn_eg_db OrganismDbi TxDb_Rnorvegicus_UCSC_rn5_refGene]; }; RmiR_Hs_miRNA = derive2 { name="RmiR.Hs.miRNA"; version="1.0.7"; sha256="0pybw908mlfrskwhnhc0bfaaqw2z13kvr10apf68s74zs0ss57b4"; depends=[AnnotationDbi]; }; @@ -204,8 +204,8 @@ in with self; { RnAgilentDesign028282_db = derive2 { name="RnAgilentDesign028282.db"; version="3.2.3"; sha256="00qri74spbpym7krk1clx0kl429b1592afk5bfr3j8j3iw99g4af"; depends=[AnnotationDbi org_Rn_eg_db]; }; Roberts2005Annotation_db = derive2 { name="Roberts2005Annotation.db"; version="3.2.3"; sha256="1fc95c6x36n7zbr5ca680hyffxngma26gz0bdzylbw0w4mqmj6ga"; depends=[AnnotationDbi org_Hs_eg_db]; }; SHDZ_db = derive2 { name="SHDZ.db"; version="3.2.3"; sha256="077xy2zx3f4c01di18ki32xmrwgsc1qjci3wj33nmgsy5925zdxs"; depends=[AnnotationDbi org_Hs_eg_db]; }; - SIFT_Hsapiens_dbSNP132 = derive2 { name="SIFT.Hsapiens.dbSNP132"; version="1.0.2"; sha256="1akqhmv9hp41q2jrvz4xvpdi30c4c6v4xbz6ykn6pdf0217p7xry"; depends=[AnnotationDbi RSQLite VariantAnnotation]; }; - SIFT_Hsapiens_dbSNP137 = derive2 { name="SIFT.Hsapiens.dbSNP137"; version="1.0.0"; sha256="1472abqanbwziyynr851xzhg7ck8w1n98ymmggg7s46hzix5mlj8"; depends=[AnnotationDbi RSQLite VariantAnnotation]; }; + SIFT_Hsapiens_dbSNP132 = derive2 { name="SIFT.Hsapiens.dbSNP132"; version="1.0.2"; sha256="1akqhmv9hp41q2jrvz4xvpdi30c4c6v4xbz6ykn6pdf0217p7xry"; depends=[AnnotationDbi VariantAnnotation]; }; + SIFT_Hsapiens_dbSNP137 = derive2 { name="SIFT.Hsapiens.dbSNP137"; version="1.0.0"; sha256="1472abqanbwziyynr851xzhg7ck8w1n98ymmggg7s46hzix5mlj8"; depends=[AnnotationDbi VariantAnnotation]; }; SNPlocs_Hsapiens_dbSNP_20101109 = derive2 { name="SNPlocs.Hsapiens.dbSNP.20101109"; version="0.99.7"; sha256="1r1gvx563gv1lidi099yw7lvf8c0983yck9yf8r8iypiz1d4az73"; depends=[GenomicRanges IRanges S4Vectors]; }; SNPlocs_Hsapiens_dbSNP_20120608 = derive2 { name="SNPlocs.Hsapiens.dbSNP.20120608"; version="0.99.11"; sha256="0a1nyni8h3a7sq2sj5jfn3w6abkl5lwzbzhb8kg74v4359albcgm"; depends=[BSgenome GenomicRanges IRanges]; }; SNPlocs_Hsapiens_dbSNP141_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP141.GRCh38"; version="0.99.11"; sha256="1dl5gs9iqdvaplvggpngp37pzgbjaavw98qppv2cp65ih9rn0wc0"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; @@ -335,9 +335,9 @@ in with self; { genomewidesnp5Crlmm = derive2 { name="genomewidesnp5Crlmm"; version="1.0.6"; sha256="06dmwnjy3gb53y6nr02dmp22qzfl5d63wppazrabcqbzwimhnvp8"; depends=[]; }; genomewidesnp6Crlmm = derive2 { name="genomewidesnp6Crlmm"; version="1.0.7"; sha256="16qcxa32fmbdcv5dck0grsnqyfcqql7wpxa1l6andv9hrvabv2jx"; depends=[]; }; gp53cdf = derive2 { name="gp53cdf"; version="2.18.0"; sha256="11p69rxia8bqajix3jg34vnhczyxgpq50k5kdh878h7bn0mpg6bj"; depends=[AnnotationDbi]; }; - grasp2db = derive2 { name="grasp2db"; version="1.1.0"; sha256="1aq19myhcl9kdmzy8f4c3ilf0s0ng99rl58jja2xlmqsm2hik7ya"; depends=[AnnotationHub dbplyr digest dplyr GenomeInfoDb RSQLite]; }; + grasp2db = derive2 { name="grasp2db"; version="1.1.0"; sha256="1aq19myhcl9kdmzy8f4c3ilf0s0ng99rl58jja2xlmqsm2hik7ya"; depends=[AnnotationHub GenomeInfoDb]; }; greengenes13_5MgDb = derive2 { name="greengenes13.5MgDb"; version="2.0.0"; sha256="0j4pd653vlfpd9gq6gi459lra8xhyknjrzadkx9d3zjy0hcwpj7r"; depends=[]; }; - gwascatData = derive2 { name="gwascatData"; version="0.99.6"; sha256="1xhmzl06vivq8x01h60q3c4vql67wjgjfs35j4ifmixp1qhicgga"; depends=[data_table]; }; + gwascatData = derive2 { name="gwascatData"; version="0.99.6"; sha256="1xhmzl06vivq8x01h60q3c4vql67wjgjfs35j4ifmixp1qhicgga"; depends=[]; }; h10kcod_db = derive2 { name="h10kcod.db"; version="3.4.0"; sha256="0f30n339ib8q478a7axjdh8hzrqws762m680ha0sxm3a0nxwapgg"; depends=[AnnotationDbi org_Hs_eg_db]; }; h20kcod_db = derive2 { name="h20kcod.db"; version="3.4.0"; sha256="0csh59bgpn5xyaw6bfg7nvi9vcvjd4f66f0dr3xh7c6316835mnx"; depends=[AnnotationDbi org_Hs_eg_db]; }; hapmap370k = derive2 { name="hapmap370k"; version="1.0.1"; sha256="0n6rmrqcbl665a1l6jxk1gn6518x4gxadzy5dc9k9v01cbh3qzmw"; depends=[]; }; @@ -492,7 +492,7 @@ in with self; { illuminaRatv1_db = derive2 { name="illuminaRatv1.db"; version="1.26.0"; sha256="1krpp3pb3h2nrk5jrx54a3v6473qsjnz5wksysy8p4zpisvnxyfb"; depends=[AnnotationDbi org_Rn_eg_db]; }; indac_db = derive2 { name="indac.db"; version="3.2.3"; sha256="0jjkiyhjcjgk9888a96g5w80k8a652cww5dhidbdiq5d8gakbnji"; depends=[AnnotationDbi org_Dm_eg_db]; }; lumiHumanAll_db = derive2 { name="lumiHumanAll.db"; version="1.22.0"; sha256="0kn2m31b4q8r1lm4iwda9i62la4akj0c35pi3khbfvkmdrvbvhd2"; depends=[AnnotationDbi org_Hs_eg_db]; }; - lumiHumanIDMapping = derive2 { name="lumiHumanIDMapping"; version="1.10.1"; sha256="0j29cd01z840jg4zq0yczjsqnya1vpx6hajqdq96msiy4i5fj534"; depends=[AnnotationDbi DBI lumi]; }; + lumiHumanIDMapping = derive2 { name="lumiHumanIDMapping"; version="1.10.1"; sha256="0j29cd01z840jg4zq0yczjsqnya1vpx6hajqdq96msiy4i5fj534"; depends=[AnnotationDbi lumi]; }; lumiMouseAll_db = derive2 { name="lumiMouseAll.db"; version="1.22.0"; sha256="00iawk8wb1hnvmy898nl9hc85rfzzwi34lpnv2d37rw4wdn57z33"; depends=[AnnotationDbi org_Mm_eg_db]; }; lumiMouseIDMapping = derive2 { name="lumiMouseIDMapping"; version="1.10.0"; sha256="18mc7vwp2p53ns2paa4glj570shmbq9lk318g3p9nl09mxyadim9"; depends=[AnnotationDbi lumi]; }; lumiRatAll_db = derive2 { name="lumiRatAll.db"; version="1.22.0"; sha256="1yh0q8aw33xsn4phj04v0mhjn8xh3z06jrg7yfi9qz1c985z1gw6"; depends=[AnnotationDbi org_Rn_eg_db]; }; @@ -529,8 +529,8 @@ in with self; { mgug4121a_db = derive2 { name="mgug4121a.db"; version="3.2.3"; sha256="0947crjk8nj4bzgwz7anran7y2qhd1v8bp9f59ja3628rgjx6cz5"; depends=[AnnotationDbi org_Mm_eg_db]; }; mgug4122a_db = derive2 { name="mgug4122a.db"; version="3.2.3"; sha256="0x4mrjqd9wnppkp757f3azllbjiilxfds3cpbcrfsi07l8lf4mxx"; depends=[AnnotationDbi org_Mm_eg_db]; }; mi16cod_db = derive2 { name="mi16cod.db"; version="3.4.0"; sha256="1v64plvn173hdvjyy491qh2wd4mgbpwr27iq7lab9b3w1g3b1a82"; depends=[AnnotationDbi org_Mm_eg_db]; }; - miRBaseVersions_db = derive2 { name="miRBaseVersions.db"; version="1.1.0"; sha256="09n0309glsj53g6wainl5m0vwnlx71ija5zmlqd0cpbhdis5zihw"; depends=[AnnotationDbi DBI gtools RSQLite]; }; - miRNAtap_db = derive2 { name="miRNAtap.db"; version="0.99.10"; sha256="1j4igmyb9f4fa0a72hkmq3f7xgvyv38wai3mds5sd6mfgfc3brs3"; depends=[AnnotationDbi DBI miRNAtap RSQLite]; }; + miRBaseVersions_db = derive2 { name="miRBaseVersions.db"; version="1.1.0"; sha256="09n0309glsj53g6wainl5m0vwnlx71ija5zmlqd0cpbhdis5zihw"; depends=[AnnotationDbi]; }; + miRNAtap_db = derive2 { name="miRNAtap.db"; version="0.99.10"; sha256="1j4igmyb9f4fa0a72hkmq3f7xgvyv38wai3mds5sd6mfgfc3brs3"; depends=[AnnotationDbi miRNAtap]; }; mirbase_db = derive2 { name="mirbase.db"; version="1.2.0"; sha256="0l7ah1ia7q1h16av2v1qa9nqpr0604z5dlrq37kd0aiz8dcxyddk"; depends=[AnnotationDbi]; }; mirna102xgaincdf = derive2 { name="mirna102xgaincdf"; version="2.18.0"; sha256="03q71dq6b0plivj5bgpgx0pnqdwfgplakyk5ggj4w7kqwmr5k17i"; depends=[AnnotationDbi]; }; mirna10cdf = derive2 { name="mirna10cdf"; version="2.18.0"; sha256="146gc1dx071vawn29k2m31zpi3wdwykss4qh8znpmbp5qcja4hyb"; depends=[AnnotationDbi]; }; @@ -616,175 +616,175 @@ in with self; { org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.14.0"; sha256="1ysrc12kzhlf5d86bz9dv7prjcwh68mww18dgivfamzqsk0x6wir"; depends=[AnnotationDbi]; }; paeg1acdf = derive2 { name="paeg1acdf"; version="2.18.0"; sha256="127pgxxp5wp3hgmafbzdzsk4gqnllq1m1gcsfyzkvpkvmbn4aa9n"; depends=[AnnotationDbi]; }; paeg1aprobe = derive2 { name="paeg1aprobe"; version="2.18.0"; sha256="0hbyd402wf9nzy2g93nhnf2zsi9jvhgfk0llxlyfk0kqxs0y4byy"; depends=[AnnotationDbi]; }; - pd_081229_hg18_promoter_medip_hx1 = derive2 { name="pd.081229.hg18.promoter.medip.hx1"; version="0.99.4"; sha256="1h4925dmw0vfsnhllg55gswq3sxfmx9rcjzifdvgs9y27399psrr"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; }; - pd_2006_07_18_hg18_refseq_promoter = derive2 { name="pd.2006.07.18.hg18.refseq.promoter"; version="1.8.1"; sha256="09593qkh3jqlgxlqrpl3gla3y1kcshnzlq6nf10xhlps0qdlskhx"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; }; - pd_2006_07_18_mm8_refseq_promoter = derive2 { name="pd.2006.07.18.mm8.refseq.promoter"; version="0.99.3"; sha256="14cm7z1y7rsk5m2zazg27wvjabckb9ifwa1g091ckwn1jfaf7aqn"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; }; - pd_2006_10_31_rn34_refseq_promoter = derive2 { name="pd.2006.10.31.rn34.refseq.promoter"; version="0.99.3"; sha256="0v0fa1hn5bwa15vg31dar2x0xfki0xby6qf5p1a0ivrx3pnvbsrl"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; }; - pd_ag = derive2 { name="pd.ag"; version="3.12.0"; sha256="0kh7ridgihqpibazpxpf9y8qiznxm4nng39701abamadxb5r6qmq"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_aragene_1_0_st = derive2 { name="pd.aragene.1.0.st"; version="3.12.0"; sha256="0255bgsqz8fflnlnxw77wvv6rky46n3pcryk9yhw7nfx0cq19v4r"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_aragene_1_1_st = derive2 { name="pd.aragene.1.1.st"; version="3.12.0"; sha256="105qfxg8p9z0bzffm6zg16c5f6nnv5hddlpcxs0kp3daddap8h5s"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_ath1_121501 = derive2 { name="pd.ath1.121501"; version="3.12.0"; sha256="0j83s6402xrggnlnqjyphy577by9w1ncvf1az4immzaixdamaaxc"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_barley1 = derive2 { name="pd.barley1"; version="3.12.0"; sha256="0mha6w2zh7gi4y7ngkh84jaff50h8l9a0q9dwc8a00m5npkpkv4g"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_bovgene_1_0_st = derive2 { name="pd.bovgene.1.0.st"; version="3.12.0"; sha256="00ys19pdc7zgprfrhmk0pzfb5q96qy0vqxi2a6g28pxwf3367b30"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_bovgene_1_1_st = derive2 { name="pd.bovgene.1.1.st"; version="3.12.0"; sha256="0npjm9rpcwj5j8sh1mdr5j1fz7dbwrqvjh2jx69fpslry69i6daq"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_bovine = derive2 { name="pd.bovine"; version="3.12.0"; sha256="1g03za5jc8lz21wpx1h2rcxdwsx7ddmmnyflz46z35ginzy41g7h"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_bsubtilis = derive2 { name="pd.bsubtilis"; version="3.12.0"; sha256="07x4dss0zp3p315q38bi7xarycav2hr44x7jb1jx4dypr0jh98mh"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_cangene_1_0_st = derive2 { name="pd.cangene.1.0.st"; version="3.12.0"; sha256="0dcwy6gnlj51hkc2gsv6fdq02vczci4z37f3iy1n8zkvz5b4yw6c"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_cangene_1_1_st = derive2 { name="pd.cangene.1.1.st"; version="3.12.0"; sha256="0pgw1424rvg3k9m3z6ffiyfj91i930dx2slqd15bnvc9hrr75094"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_canine = derive2 { name="pd.canine"; version="3.12.0"; sha256="0xpisxv7c990w44gd5g2iwfzqi3618xa3mdps69z2j4bfrcm37vq"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_canine_2 = derive2 { name="pd.canine.2"; version="3.12.0"; sha256="1dx914yyq6ry88d6fipsxsvp41pgcgllznpwsqqm2xa99y85ka5y"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_celegans = derive2 { name="pd.celegans"; version="3.12.0"; sha256="08byc5xvnbfdlikv9118k52pk37br4k8hn86xypkrmbz67fzlzpd"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_charm_hg18_example = derive2 { name="pd.charm.hg18.example"; version="0.99.4"; sha256="0nqv3h4zp83vp7q49n956920x5hdfcbw4z3hlvmqx8dixbgr1jrg"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; }; - pd_chicken = derive2 { name="pd.chicken"; version="3.12.0"; sha256="1alkhr297ar6iv7nrjxnlhmq3xvjzpl46mdckkbxw13w73vj6p32"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_chigene_1_0_st = derive2 { name="pd.chigene.1.0.st"; version="3.12.0"; sha256="0smfgx1brfla96ijsv3a3ljcn02kpbk6sczgp06dik3g0k54788h"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_chigene_1_1_st = derive2 { name="pd.chigene.1.1.st"; version="3.12.0"; sha256="013baf38h35fsxq0f32v00rizik8iq76jm1s8azkicv90bvw5g8k"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_chogene_2_0_st = derive2 { name="pd.chogene.2.0.st"; version="3.12.0"; sha256="0pljjz466y2aav9045qgr5hbrv7alyl3gw3br4a8knbijk6fbw15"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_chogene_2_1_st = derive2 { name="pd.chogene.2.1.st"; version="3.12.0"; sha256="0d9pslimh0w37yvvfgqljbr2z5arjn6kx0wnjhp19gcch44jvkr2"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_citrus = derive2 { name="pd.citrus"; version="3.12.0"; sha256="1792gsxdr24264n121zvspdq39ac3khaghv5j66rn2nzqds75qch"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_clariom_d_human = derive2 { name="pd.clariom.d.human"; version="3.14.1"; sha256="11q4s4q07fpkl5wpmhhjfkrp4l8i8gy1i8wc80aar84lp1261vvx"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_clariom_s_human = derive2 { name="pd.clariom.s.human"; version="3.14.1"; sha256="0a68mnwv735mi9k9qxs2vv4hnh76yg1n7jjyaw34g8m7405yjxxp"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_clariom_s_human_ht = derive2 { name="pd.clariom.s.human.ht"; version="3.14.1"; sha256="08fzm8xp6wa4x03vqb28dvlz3hiwv2q5n5h9m2np0g4g40hbhg89"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_clariom_s_mouse = derive2 { name="pd.clariom.s.mouse"; version="3.14.1"; sha256="15fc25840lnhv0rlxc98akda1gis1s4xn61ycvymjii3lgx8hwpk"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_clariom_s_mouse_ht = derive2 { name="pd.clariom.s.mouse.ht"; version="3.14.1"; sha256="1ka9mganvymml306yh196rqan333ykrmqp9dfl4xs9mz57p405kk"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_clariom_s_rat = derive2 { name="pd.clariom.s.rat"; version="3.14.1"; sha256="1bx0vipcw3vjpz59h5820yanwy7b8mxb8bkgwp3n58vm24x7l304"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_clariom_s_rat_ht = derive2 { name="pd.clariom.s.rat.ht"; version="3.14.1"; sha256="17fk4qiznh2ks7r4mzbv1gnpjca39n6rzshb5dw5n73rbnd24160"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_cotton = derive2 { name="pd.cotton"; version="3.12.0"; sha256="1h71klvndi32j7hb7cy2w6asf7lb1xhs5glxajnd30y7ksigba7l"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_cyngene_1_0_st = derive2 { name="pd.cyngene.1.0.st"; version="3.12.0"; sha256="1xkv8m346x1zrnp4bhbjk2xwfq5jkbprbh417bya8swqvcyv3zbj"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_cyngene_1_1_st = derive2 { name="pd.cyngene.1.1.st"; version="3.12.0"; sha256="1kicrk0n2lik32q9nkpfy8ydh8klsy6i5cy6m2grddv80g5hc6n4"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_cyrgene_1_0_st = derive2 { name="pd.cyrgene.1.0.st"; version="3.12.0"; sha256="1s7rrwcmaar230y90hhvrx3wxlp228j88pwdh2glap2pn3d3rlnd"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_cyrgene_1_1_st = derive2 { name="pd.cyrgene.1.1.st"; version="3.12.0"; sha256="0p7j8ygyx8f5aqyy847rfcc35hrkcavi1700af971jjrha3gllc0"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_cytogenetics_array = derive2 { name="pd.cytogenetics.array"; version="3.12.0"; sha256="0gd7q64zfxda9irdmmr92iqxlswaj5v4pklsfm96xkn8lxq34dlb"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_drogene_1_0_st = derive2 { name="pd.drogene.1.0.st"; version="3.12.0"; sha256="1zp85q3a2bayr0q5r0ij62kfypzngcz9v791xsf9n9k7nx6714fi"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_drogene_1_1_st = derive2 { name="pd.drogene.1.1.st"; version="3.12.0"; sha256="0yjxjzmcx2hh6rm15p9d36vfj77fwmd7q2kbjk8h7hbpkm72ssdf"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_drosgenome1 = derive2 { name="pd.drosgenome1"; version="3.12.0"; sha256="1cp3fs2g88yv50gkd6m769idlj7kci2g82wafn17ci65g64q0g05"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_drosophila_2 = derive2 { name="pd.drosophila.2"; version="3.12.0"; sha256="0rr3l6203nfzhz21wps7dfcifvzmbnixcr2piv5jdfh7birj23aa"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_e_coli_2 = derive2 { name="pd.e.coli.2"; version="3.12.0"; sha256="1nny0w0adg433n1i20q0jdmi5yy1anpa91dgrklpvxyxbr5902vz"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_ecoli = derive2 { name="pd.ecoli"; version="3.12.0"; sha256="0mi5i0cp5xz97pb3ic6qmwl3fp4byyddvas2npll4ngarl5wv5ag"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_ecoli_asv2 = derive2 { name="pd.ecoli.asv2"; version="3.12.0"; sha256="19pn7691cr0vakxlx0q0x3p1pfc0z8l5f14475bv2fr4djljhhma"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_elegene_1_0_st = derive2 { name="pd.elegene.1.0.st"; version="3.12.0"; sha256="1if8gwvvk9jybsrcwr8sayg1czchpnlmysa9plrm50g7r2ki7m4l"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_elegene_1_1_st = derive2 { name="pd.elegene.1.1.st"; version="3.12.0"; sha256="18v3n3ss3rl2ksvjg1jk1w0mprhhxra55znixfcd8ikqsrdfj2a2"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_equgene_1_0_st = derive2 { name="pd.equgene.1.0.st"; version="3.12.0"; sha256="01vcj6a6hm9j2fbhrz244sbig63j1jyxyg068q4hizpl9lpzaibd"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_equgene_1_1_st = derive2 { name="pd.equgene.1.1.st"; version="3.12.0"; sha256="0migyzmrgqvvnkl8w61qv26hj5kjy720q4ipamdn99z9s4r8cxrn"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_feinberg_hg18_me_hx1 = derive2 { name="pd.feinberg.hg18.me.hx1"; version="0.99.3"; sha256="1k50khs7mrp1qy9z0whm5drwv59m8zn7v0zxhv26bpvmwbrnlhfg"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; }; - pd_feinberg_mm8_me_hx1 = derive2 { name="pd.feinberg.mm8.me.hx1"; version="0.99.3"; sha256="1xk4rmpxjh9mwijwglzlycg7bk2zk599fk7xbnk114rj216y2jsm"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; }; - pd_felgene_1_0_st = derive2 { name="pd.felgene.1.0.st"; version="3.12.0"; sha256="1lf3lp3zjprfwni2nfdpkvj2j6y7hd7znmxqcgj46vccznc49hh6"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_felgene_1_1_st = derive2 { name="pd.felgene.1.1.st"; version="3.12.0"; sha256="027cgqxfgmlkx64y6nm9h36ji781fkrnnrdxblh8h4jwjd5n36rj"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_fingene_1_0_st = derive2 { name="pd.fingene.1.0.st"; version="3.12.0"; sha256="0l19h920cghw65nqbh79s1rwijqdl7k84km0iv1fgx0kxhh28xa0"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_fingene_1_1_st = derive2 { name="pd.fingene.1.1.st"; version="3.12.0"; sha256="1habbw9fvygailw73azfrvczgp6ap1az688vz8pklqq77vlqs1qz"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_genomewidesnp_5 = derive2 { name="pd.genomewidesnp.5"; version="3.14.1"; sha256="1kiqmcc07q2m7hkgqczqndk7frpwibpsi2c0ihr5av0vjrp118ak"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_genomewidesnp_6 = derive2 { name="pd.genomewidesnp.6"; version="3.14.1"; sha256="1f35nw987axlc5rsr97i7rwcy1dd8zjjj6jf4cg75y0la6rvhfw4"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_guigene_1_0_st = derive2 { name="pd.guigene.1.0.st"; version="3.12.0"; sha256="1rq5gbdm6k0shv82zy7vrqxahzffh1xikrd3a6d1ai67n129bv6f"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_guigene_1_1_st = derive2 { name="pd.guigene.1.1.st"; version="3.12.0"; sha256="0p53kkhaa4d6ib32sfnwvs363zir227dmzxp8yqma0z4kz0djdna"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_hc_g110 = derive2 { name="pd.hc.g110"; version="3.12.0"; sha256="014bb45m2pwwbz7aca6l6442188mkp5bsk46z7x18g0aa66p06hv"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_hg_focus = derive2 { name="pd.hg.focus"; version="3.12.0"; sha256="1qlkhxq76nb55c299g7x7x8wn8nx1mg4ra5b0faflsjirkh4b32s"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_hg_u133_plus_2 = derive2 { name="pd.hg.u133.plus.2"; version="3.12.0"; sha256="02ip0mf24lw818ij8xgk7cylb5q1059jwvbdd2aynqqwy2mg31h0"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_hg_u133a = derive2 { name="pd.hg.u133a"; version="3.12.0"; sha256="08bk5im2zkb1vif1i6bgfx068xcl5q5m0ac33zpscfdq4jashm7k"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_hg_u133a_2 = derive2 { name="pd.hg.u133a.2"; version="3.12.0"; sha256="1rlh62r5zmxllkc9izr6a4yr2n88flfz1rybwvi90yggc788chxy"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_hg_u133a_tag = derive2 { name="pd.hg.u133a.tag"; version="3.12.0"; sha256="1ndjzcydshh5f3cnrav91hi47bx92z6rqliiwirhx2cqk8bvz5yp"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_hg_u133b = derive2 { name="pd.hg.u133b"; version="3.12.0"; sha256="1mafh53bj6g30869pdyl59040m2crqqbfcbdpdxfpigxpqr3rb4c"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_hg_u219 = derive2 { name="pd.hg.u219"; version="3.12.0"; sha256="04kqvh5ilf83z2iwvfw7m8xsgjxy29vqayp1lgh38y48j0nn24dk"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_hg_u95a = derive2 { name="pd.hg.u95a"; version="3.12.0"; sha256="1c7d16im1xxs8v0ccn19klwv43qr6b4iw0k5hz9cl8m10jmyw49b"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_hg_u95av2 = derive2 { name="pd.hg.u95av2"; version="3.12.0"; sha256="1l3y2bhjk67jwxvxwn5rngzn5c2dzk4lk24cm74f6px845qw5sk7"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_hg_u95b = derive2 { name="pd.hg.u95b"; version="3.12.0"; sha256="0gyxh7nagya1hgh5vvwalxmhbqm9pii3l6h1mndvx2ib58msh49h"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_hg_u95c = derive2 { name="pd.hg.u95c"; version="3.12.0"; sha256="0p9yrwjw75r5dg3z0pl4yr04agjpqv9rz3in2faw3pqawdzndihq"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_hg_u95d = derive2 { name="pd.hg.u95d"; version="3.12.0"; sha256="0ygfx73b122b468zvr9lhw2vkr1aijasrazarqjqc8bjbfm4fybw"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_hg_u95e = derive2 { name="pd.hg.u95e"; version="3.12.0"; sha256="0cksi811m9fzjq5linlsarfswp3p7rdgks0js3chv91jr3v2z3a7"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_hg18_60mer_expr = derive2 { name="pd.hg18.60mer.expr"; version="3.12.0"; sha256="1lsfsgsj6gyv0q509d0axr6g2yv226zxqh8f2n1hw0kfxwl27bm8"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_ht_hg_u133_plus_pm = derive2 { name="pd.ht.hg.u133.plus.pm"; version="3.12.0"; sha256="1000f1d28yzc0kcdf380fkx3xlgla3kn4n9f2ddawzjb7igash92"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_ht_hg_u133a = derive2 { name="pd.ht.hg.u133a"; version="3.12.0"; sha256="14bnnxsn02mpyynn8bvl8c47id9l2wfakngbvpq4h5yjy689jm1c"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_ht_mg_430a = derive2 { name="pd.ht.mg.430a"; version="3.12.0"; sha256="10shsap47217p6zmb9fn86na7if965h45l2r787cisgyyn9n45mq"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_hta_2_0 = derive2 { name="pd.hta.2.0"; version="3.12.2"; sha256="004mm93wag59arzirws3cfqjv4whl8sbv558xxg7pj1ar026g4m3"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_hu6800 = derive2 { name="pd.hu6800"; version="3.12.0"; sha256="07dj0avpx53kwaab9s126pn844nal9kn3h288n1m0kihir2mrjmv"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_huex_1_0_st_v2 = derive2 { name="pd.huex.1.0.st.v2"; version="3.14.1"; sha256="1chlvjy1gvw5r8hfmkb34m3h7w2z4s5x9gsc50qbj84988k4gzga"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_hugene_1_0_st_v1 = derive2 { name="pd.hugene.1.0.st.v1"; version="3.14.1"; sha256="1ikd6h7wnyxm11j0had2wcsxfbfrwdfw9605bvvdgd63dlvdv5dk"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_hugene_1_1_st_v1 = derive2 { name="pd.hugene.1.1.st.v1"; version="3.14.1"; sha256="0bsvwr4h8j4niagnmf7d2jd714dqk4yzdhr664z6vpx6429s0rsw"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_hugene_2_0_st = derive2 { name="pd.hugene.2.0.st"; version="3.14.1"; sha256="02m5x9mrz4ca0w84ljmdpw7rnlzqbqdq0q5k4sg7izx99k5c8r59"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_hugene_2_1_st = derive2 { name="pd.hugene.2.1.st"; version="3.14.1"; sha256="07la78206cvilfm8l2fwrcyy3gpwnhn0p32ilv043ln9drka2r8h"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_maize = derive2 { name="pd.maize"; version="3.12.0"; sha256="02viqnqf02d75sbarxh1k76966yay5i6wwdx118s4c9nlr5q6aqg"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_mapping250k_nsp = derive2 { name="pd.mapping250k.nsp"; version="3.12.0"; sha256="10j8c18glhvg07zp6w84hlc6l3a3qkvcvfnq0blpjfdk3a2lndz7"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_mapping250k_sty = derive2 { name="pd.mapping250k.sty"; version="3.12.0"; sha256="1hpyijrkr6svxxhrdp6s4jjcvr44hhbrdhrzvnw5ywpykmbphryc"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_mapping50k_hind240 = derive2 { name="pd.mapping50k.hind240"; version="3.12.0"; sha256="1whpjdr4aql846cm8nzgs613pi12qdqfixhqcfv8wrqyks27kq6s"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_mapping50k_xba240 = derive2 { name="pd.mapping50k.xba240"; version="3.12.0"; sha256="1a1f3lh5ywhyjawdbj2fzban85c8jz70lfcv3pagd5piincjwxq8"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_margene_1_0_st = derive2 { name="pd.margene.1.0.st"; version="3.12.0"; sha256="1s4l57hw511cnzj197jvvzqs8ymfbf14khxcv4llg55prxnvvnfc"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_margene_1_1_st = derive2 { name="pd.margene.1.1.st"; version="3.12.0"; sha256="067jv9486win2kv563gr4vpc96lpl02zqd09cnma7ycd7l1nvj9s"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_medgene_1_0_st = derive2 { name="pd.medgene.1.0.st"; version="3.12.0"; sha256="0f5blbhlp160av6r37icjdq2lyrvip09r4yzxhfa2vlxpcm7i83m"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_medgene_1_1_st = derive2 { name="pd.medgene.1.1.st"; version="3.12.0"; sha256="1mlyv6qjcxj9q416pmjq36q0aqp5l47pkd557ayaqd7gm3ygikcq"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_medicago = derive2 { name="pd.medicago"; version="3.12.0"; sha256="1wm81jr9d04yiyg0alj197fjigcvjhz2kvh8j6jw9yaawppr0c5p"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_mg_u74a = derive2 { name="pd.mg.u74a"; version="3.12.0"; sha256="1jji6g49icsxyam9qx3mbaspg24q0hjavi0w75k99m2ckmllc47c"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_mg_u74av2 = derive2 { name="pd.mg.u74av2"; version="3.12.0"; sha256="08ym915fb26qbz2r9kzgf7znai4mc06lr59l1da0x02iaixagg32"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_mg_u74b = derive2 { name="pd.mg.u74b"; version="3.12.0"; sha256="0yav9ghdk8y12bsqam2r0p4q3r1yymfwrz1kdg0l7qfzw3mn141d"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_mg_u74bv2 = derive2 { name="pd.mg.u74bv2"; version="3.12.0"; sha256="0hxczlax8qnghp4f7d3ph2y5j3vz3k4iwl6lyw3sig51msl4q6sd"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_mg_u74c = derive2 { name="pd.mg.u74c"; version="3.12.0"; sha256="13sq8jmwlqrci87bnl313dyqzy6v141r3fqzh1frl1w66ilw9chm"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_mg_u74cv2 = derive2 { name="pd.mg.u74cv2"; version="3.12.0"; sha256="1s59s9ch1ynrmnsn5jl2b19phij4qamgcpfs3f5zhji6ip41lckj"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_mirna_1_0 = derive2 { name="pd.mirna.1.0"; version="3.12.0"; sha256="0klkmrljgvkqvdlm07c47bl0jppbzz95ikxabfi8b3ajv78k6gn1"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_mirna_2_0 = derive2 { name="pd.mirna.2.0"; version="3.12.0"; sha256="12ynrrr0jrc0kl6s4pkn9fv3r3bh6wsbrfyywb5bvxf71n75wnqy"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_mirna_3_0 = derive2 { name="pd.mirna.3.0"; version="3.12.0"; sha256="0awghps8nlisdj2anvs400dn1hwdi8iw6xlrw17qr70fznbihdsy"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_mirna_3_1 = derive2 { name="pd.mirna.3.1"; version="3.8.1"; sha256="0g8fjwhxmps1w5f7lvnv258qn2ipggs1ar4r810amqqxd0yd5ah2"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; }; - pd_mirna_4_0 = derive2 { name="pd.mirna.4.0"; version="3.12.0"; sha256="000gqhcvlpydrpr61853q22x8gvzmlf1kp7w98lll5g1vvwkw1ad"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_moe430a = derive2 { name="pd.moe430a"; version="3.12.0"; sha256="15qys3pm8nwkr385y8mj976k16as8r65lmzykm8cy0skl071i8wb"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_moe430b = derive2 { name="pd.moe430b"; version="3.12.0"; sha256="1xas3ld65xp2g1cfkd1n4v3yvx3g0g221c3ag550k552v0alfbyd"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_moex_1_0_st_v1 = derive2 { name="pd.moex.1.0.st.v1"; version="3.14.1"; sha256="13bqzbyqngbhj7yji568cc36fq0zw0bjaglfp2n9nnhdddd8b62x"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_mogene_1_0_st_v1 = derive2 { name="pd.mogene.1.0.st.v1"; version="3.14.1"; sha256="1hmb8kf91jd9q6b4pxiwlaj6ajzmkv1c3xsszyps5cwv13pgdjix"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_mogene_1_1_st_v1 = derive2 { name="pd.mogene.1.1.st.v1"; version="3.14.1"; sha256="13s7r8g29y56qbj2xm81r5kj65y2qcp5d24bakbhfcvz60wzljqf"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_mogene_2_0_st = derive2 { name="pd.mogene.2.0.st"; version="3.14.1"; sha256="0205jk6x8r35bmma771q6km631jlppm4y72zy85bv87dv4adxci8"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_mogene_2_1_st = derive2 { name="pd.mogene.2.1.st"; version="3.14.1"; sha256="14qwcq6yyy2ayrqv8kr33chlpgw3vkgq8iwb3yycsh3x3wz40jb8"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_mouse430_2 = derive2 { name="pd.mouse430.2"; version="3.12.0"; sha256="1ix7vkjy175cxbsbs67z38dhszxjik6370j0jkfpcknms6bh1db3"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_mouse430a_2 = derive2 { name="pd.mouse430a.2"; version="3.12.0"; sha256="11ywfshqxjmwf9q4sj97zv3ylynfkswcfaqglj883p4719lhxmc3"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_mta_1_0 = derive2 { name="pd.mta.1.0"; version="3.12.0"; sha256="07vznamds5lc1xnpv7kjwcrsd5zq0ap4gk8a85xqb93fmcc9ypqi"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_mu11ksuba = derive2 { name="pd.mu11ksuba"; version="3.12.0"; sha256="10fkys7y5b5frdrjqw3x2gqzp51lgg29nw6gxz25yi5fznc3nnv2"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_mu11ksubb = derive2 { name="pd.mu11ksubb"; version="3.12.0"; sha256="08734j3asq56v090zi0gzk3ryycjm78dfbb0xqmpr7ggqys96qp9"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_nugo_hs1a520180 = derive2 { name="pd.nugo.hs1a520180"; version="3.4.0"; sha256="1qc87zrrccld1hdqmrk1if98c6jq343gzlmib40wvshmrijp3sk3"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_nugo_mm1a520177 = derive2 { name="pd.nugo.mm1a520177"; version="3.4.0"; sha256="0568zvxc11w2i32wimhmi4271jbmpn97kb0vn4ns20hfg4h63m99"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_ovigene_1_0_st = derive2 { name="pd.ovigene.1.0.st"; version="3.12.0"; sha256="0vga20rb0v4yzd28szsppbgfhmn6ky85qrjj9llvacnlj1riwxsi"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_ovigene_1_1_st = derive2 { name="pd.ovigene.1.1.st"; version="3.12.0"; sha256="1vzrizvk1dbj6ngjxv9wpbm89q5mr8dkfhr0azrczs54c92xy48r"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_pae_g1a = derive2 { name="pd.pae.g1a"; version="3.12.0"; sha256="0b0bmzfrh7lm2i5d66z24iz0d5zj3qhw89aw011yssks7sr9lq90"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_plasmodium_anopheles = derive2 { name="pd.plasmodium.anopheles"; version="3.12.0"; sha256="0njd97jkg4hxd0jyq03227i00gmy0ccxznzqmp0mjqmkkhljn7nm"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_poplar = derive2 { name="pd.poplar"; version="3.12.0"; sha256="0j5xmf5hqvbb8ylsrvih92vxn1c1lah3mkffn64fji2lgqy9vjp9"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_porcine = derive2 { name="pd.porcine"; version="3.12.0"; sha256="0zx2gz90hhalaas3sf2rh8wcapjwmnckr0gq1r8p572chwf2rb81"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_porgene_1_0_st = derive2 { name="pd.porgene.1.0.st"; version="3.12.0"; sha256="1jiajzn31yjzs942w3i4cjqlpq81rkbryk961fqb9jpwldzg1pmy"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_porgene_1_1_st = derive2 { name="pd.porgene.1.1.st"; version="3.12.0"; sha256="038zwlckx58bw4x5naspfnvk4jcyc2g9bijrh1wd4m4k5mr1i4dk"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_rabgene_1_0_st = derive2 { name="pd.rabgene.1.0.st"; version="3.12.0"; sha256="0vwxzwgwh1a0fpyqsc3mnagin67wf2jmymm9kwhcnxargpmslm7k"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_rabgene_1_1_st = derive2 { name="pd.rabgene.1.1.st"; version="3.12.0"; sha256="0qs3ka3pdlrpqh66zb62jdfm2y6p2wyn6rcp7gb5qw0s8q9h170a"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_rae230a = derive2 { name="pd.rae230a"; version="3.12.0"; sha256="14kb35pcgxh2hmpzyqp9c2xirs0p6y5dvc3h2n568jmmdd14s7j5"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_rae230b = derive2 { name="pd.rae230b"; version="3.12.0"; sha256="1db6bm6qyrzwwa2scyw6qg7qcdqq97s5vy8kv0fnqc604b1jdzzq"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_raex_1_0_st_v1 = derive2 { name="pd.raex.1.0.st.v1"; version="3.14.1"; sha256="11sxhhpb4fy7wh5k7yxwwv141xgn4r1yshx097wicpa6561ffdkc"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_ragene_1_0_st_v1 = derive2 { name="pd.ragene.1.0.st.v1"; version="3.14.1"; sha256="0afnv1f5xvdh1vdsdfi5k1zscqzpdbf4b399wib3c8dg9vslccgx"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_ragene_1_1_st_v1 = derive2 { name="pd.ragene.1.1.st.v1"; version="3.14.1"; sha256="1krygwjhqs97gyh94xfbsfd8gg285fg5bgm7rqk7wlwp8fxx8xnn"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_ragene_2_0_st = derive2 { name="pd.ragene.2.0.st"; version="3.14.1"; sha256="1rq4ivv107853pyr4jrnbms4fgfzddndibrasgql9d4msca0sbz9"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_ragene_2_1_st = derive2 { name="pd.ragene.2.1.st"; version="3.14.1"; sha256="1k9zqhnck7fgp6g0b8vmasqjvdyqshzs567rz8qabw6jk5ifssvz"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_rat230_2 = derive2 { name="pd.rat230.2"; version="3.12.0"; sha256="0ysn0qi26b3llqs312an0mlgyahf4pgmixlcq2x2n925drns34gg"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_rcngene_1_0_st = derive2 { name="pd.rcngene.1.0.st"; version="3.12.0"; sha256="0hrhvy6dbw8g1h9qgm9frpmfp45pd5h0fnbvbvz94l98a5gda7xx"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_rcngene_1_1_st = derive2 { name="pd.rcngene.1.1.st"; version="3.12.0"; sha256="1lyizr096x5idasvlivl3lb67g7n2xvblrk5zfxglaf2fgpbrgwn"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_rg_u34a = derive2 { name="pd.rg.u34a"; version="3.12.0"; sha256="18jl5w1say8zyp50iqmd6jiw8ffa7qsk6sw7h7cw0j1g90ssf4y3"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_rg_u34b = derive2 { name="pd.rg.u34b"; version="3.12.0"; sha256="19v2g9lvadvba2dy0c0qn6j8qnsds2xa4cliiq12byad21833ss0"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_rg_u34c = derive2 { name="pd.rg.u34c"; version="3.12.0"; sha256="10j3hcszx637dfd55552b75qni0yryrjk8q6p0wkd5dh6p628qrx"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_rhegene_1_0_st = derive2 { name="pd.rhegene.1.0.st"; version="3.12.0"; sha256="1mx221xvxr4ng01ibq1pc472bn5rknfv3sjsbvvfmvqgpwk6z079"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_rhegene_1_1_st = derive2 { name="pd.rhegene.1.1.st"; version="3.12.0"; sha256="0f400qal4qmkxv705n5bzz07rkrz5zgs7swk8xp4pyp161fgb171"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_rhesus = derive2 { name="pd.rhesus"; version="3.12.0"; sha256="1zrpq7ppl2gaiprvz4sm0zsxqcw2nvn6qzwi3b0cimqf7r2091dd"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_rice = derive2 { name="pd.rice"; version="3.12.0"; sha256="0fmd505vianfspb1s5glr6aacnz45dq9skbk1qwm0a9ck6a6paav"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_rjpgene_1_0_st = derive2 { name="pd.rjpgene.1.0.st"; version="3.12.0"; sha256="18qj6sdjw17553lwcb3swdx0aiv54izdzzblgl88g90ijny8rbpa"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_rjpgene_1_1_st = derive2 { name="pd.rjpgene.1.1.st"; version="3.12.0"; sha256="0i99fyf6ya13z4hfjf3f5ssvys8wjhmwk894zy0p59p7nmphigyc"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_rn_u34 = derive2 { name="pd.rn.u34"; version="3.12.0"; sha256="0ayp6r7z7p61b1lfq9dkq4ips4apgjg6igrcnvsivlfhcfcfs0wf"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_rta_1_0 = derive2 { name="pd.rta.1.0"; version="3.12.2"; sha256="0x3j1a47lxhlqnhfvh1cii11rd433x16i6xmydwq2dkvm4xgd63h"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_rusgene_1_0_st = derive2 { name="pd.rusgene.1.0.st"; version="3.12.0"; sha256="1ik28yykkpdclr5hrv8lzafzfivakwvzgz49q7bpb1g6ihwylshw"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_rusgene_1_1_st = derive2 { name="pd.rusgene.1.1.st"; version="3.12.0"; sha256="090lxwxzj39d6qzlr7c3x50zf98g8x987rv1gdn0gcas15imya6n"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_s_aureus = derive2 { name="pd.s.aureus"; version="3.12.0"; sha256="0kszw94ymxgwd3midzkpl307ch3pyr4g5qjcf4s2jsq6mrvxw666"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_soybean = derive2 { name="pd.soybean"; version="3.12.0"; sha256="0xg90m7k1x9sgmhcp1qdwhxsyr2y5g28p7a4z6gd6mng2l7cgyh0"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_soygene_1_0_st = derive2 { name="pd.soygene.1.0.st"; version="3.12.0"; sha256="1hg90pma4ikdgxpw1f5mkjcw7na4mmjbhpr06dcssjl3bvmd4yxc"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_soygene_1_1_st = derive2 { name="pd.soygene.1.1.st"; version="3.12.0"; sha256="0978vbl59afgrzy0cmwq4mhsdz5rn5d929nz90fvczm6q8g24616"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_sugar_cane = derive2 { name="pd.sugar.cane"; version="3.12.0"; sha256="09m8m99l9mrhs4gr1rb02l54k8i2wgdzz88qlbpl4xmrfnfn99h6"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_tomato = derive2 { name="pd.tomato"; version="3.12.0"; sha256="12jn8i691j3kkgwa771f4kffzfcxv19vi0waw13akch7x7cc09q7"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_u133_x3p = derive2 { name="pd.u133.x3p"; version="3.12.0"; sha256="171rv9syn90k70ivaj8c48s827c08nycpyyc2b76jy405kaqb1gl"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_vitis_vinifera = derive2 { name="pd.vitis.vinifera"; version="3.12.0"; sha256="19r2k7wx3kygw6syqph24glw0b273gpi0z0y8n4bnd3a184g6hxz"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_wheat = derive2 { name="pd.wheat"; version="3.12.0"; sha256="12n8k5ah8fncbrb2hrpi2ah29fj5rxnh5j5zk8lfwhijg2zf52ra"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_x_laevis_2 = derive2 { name="pd.x.laevis.2"; version="3.12.0"; sha256="0zf3rc8rz05hzga2g5b8khszz6sr29dlp8z1jyn94ial284d0fn3"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_x_tropicalis = derive2 { name="pd.x.tropicalis"; version="3.12.0"; sha256="1pb6jm14k0g4z9vffi3clyh7rwc11c89hinb2amczg4xfm5lqrdr"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_xenopus_laevis = derive2 { name="pd.xenopus.laevis"; version="3.12.0"; sha256="1fxd95ak5s2dw16prxdwk20hisss32nywy9dc7y72bpqrv0v309y"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_yeast_2 = derive2 { name="pd.yeast.2"; version="3.12.0"; sha256="0l6sxg79xmlb7gdxx4bx24l35jgx5y2qfp3pxzcmdnd7c7qy6z5j"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_yg_s98 = derive2 { name="pd.yg.s98"; version="3.12.0"; sha256="1krx7kkjlyc41739c349z0sdbslp19iqfai0xzy6f4jk15524vhj"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_zebgene_1_0_st = derive2 { name="pd.zebgene.1.0.st"; version="3.12.0"; sha256="1vywph8shn23k0s8jmvx34rj34y1zxgwcssjnzbipm71f2sa15hw"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_zebgene_1_1_st = derive2 { name="pd.zebgene.1.1.st"; version="3.12.0"; sha256="0xs3kx7l78dfqkasgz8n5s8qjia5qhdcnj1l8al0ivy8mwvlpyxs"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pd_zebrafish = derive2 { name="pd.zebrafish"; version="3.12.0"; sha256="0gg7y7w51pv0vf39qzyaf09wl3vxy222nr69zgxg7cylwxmaky7v"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_081229_hg18_promoter_medip_hx1 = derive2 { name="pd.081229.hg18.promoter.medip.hx1"; version="0.99.4"; sha256="1h4925dmw0vfsnhllg55gswq3sxfmx9rcjzifdvgs9y27399psrr"; depends=[Biostrings IRanges oligo oligoClasses]; }; + pd_2006_07_18_hg18_refseq_promoter = derive2 { name="pd.2006.07.18.hg18.refseq.promoter"; version="1.8.1"; sha256="09593qkh3jqlgxlqrpl3gla3y1kcshnzlq6nf10xhlps0qdlskhx"; depends=[Biostrings IRanges oligo oligoClasses]; }; + pd_2006_07_18_mm8_refseq_promoter = derive2 { name="pd.2006.07.18.mm8.refseq.promoter"; version="0.99.3"; sha256="14cm7z1y7rsk5m2zazg27wvjabckb9ifwa1g091ckwn1jfaf7aqn"; depends=[Biostrings IRanges oligo oligoClasses]; }; + pd_2006_10_31_rn34_refseq_promoter = derive2 { name="pd.2006.10.31.rn34.refseq.promoter"; version="0.99.3"; sha256="0v0fa1hn5bwa15vg31dar2x0xfki0xby6qf5p1a0ivrx3pnvbsrl"; depends=[Biostrings IRanges oligo oligoClasses]; }; + pd_ag = derive2 { name="pd.ag"; version="3.12.0"; sha256="0kh7ridgihqpibazpxpf9y8qiznxm4nng39701abamadxb5r6qmq"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_aragene_1_0_st = derive2 { name="pd.aragene.1.0.st"; version="3.12.0"; sha256="0255bgsqz8fflnlnxw77wvv6rky46n3pcryk9yhw7nfx0cq19v4r"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_aragene_1_1_st = derive2 { name="pd.aragene.1.1.st"; version="3.12.0"; sha256="105qfxg8p9z0bzffm6zg16c5f6nnv5hddlpcxs0kp3daddap8h5s"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_ath1_121501 = derive2 { name="pd.ath1.121501"; version="3.12.0"; sha256="0j83s6402xrggnlnqjyphy577by9w1ncvf1az4immzaixdamaaxc"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_barley1 = derive2 { name="pd.barley1"; version="3.12.0"; sha256="0mha6w2zh7gi4y7ngkh84jaff50h8l9a0q9dwc8a00m5npkpkv4g"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_bovgene_1_0_st = derive2 { name="pd.bovgene.1.0.st"; version="3.12.0"; sha256="00ys19pdc7zgprfrhmk0pzfb5q96qy0vqxi2a6g28pxwf3367b30"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_bovgene_1_1_st = derive2 { name="pd.bovgene.1.1.st"; version="3.12.0"; sha256="0npjm9rpcwj5j8sh1mdr5j1fz7dbwrqvjh2jx69fpslry69i6daq"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_bovine = derive2 { name="pd.bovine"; version="3.12.0"; sha256="1g03za5jc8lz21wpx1h2rcxdwsx7ddmmnyflz46z35ginzy41g7h"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_bsubtilis = derive2 { name="pd.bsubtilis"; version="3.12.0"; sha256="07x4dss0zp3p315q38bi7xarycav2hr44x7jb1jx4dypr0jh98mh"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_cangene_1_0_st = derive2 { name="pd.cangene.1.0.st"; version="3.12.0"; sha256="0dcwy6gnlj51hkc2gsv6fdq02vczci4z37f3iy1n8zkvz5b4yw6c"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_cangene_1_1_st = derive2 { name="pd.cangene.1.1.st"; version="3.12.0"; sha256="0pgw1424rvg3k9m3z6ffiyfj91i930dx2slqd15bnvc9hrr75094"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_canine = derive2 { name="pd.canine"; version="3.12.0"; sha256="0xpisxv7c990w44gd5g2iwfzqi3618xa3mdps69z2j4bfrcm37vq"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_canine_2 = derive2 { name="pd.canine.2"; version="3.12.0"; sha256="1dx914yyq6ry88d6fipsxsvp41pgcgllznpwsqqm2xa99y85ka5y"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_celegans = derive2 { name="pd.celegans"; version="3.12.0"; sha256="08byc5xvnbfdlikv9118k52pk37br4k8hn86xypkrmbz67fzlzpd"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_charm_hg18_example = derive2 { name="pd.charm.hg18.example"; version="0.99.4"; sha256="0nqv3h4zp83vp7q49n956920x5hdfcbw4z3hlvmqx8dixbgr1jrg"; depends=[Biostrings IRanges oligo oligoClasses]; }; + pd_chicken = derive2 { name="pd.chicken"; version="3.12.0"; sha256="1alkhr297ar6iv7nrjxnlhmq3xvjzpl46mdckkbxw13w73vj6p32"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_chigene_1_0_st = derive2 { name="pd.chigene.1.0.st"; version="3.12.0"; sha256="0smfgx1brfla96ijsv3a3ljcn02kpbk6sczgp06dik3g0k54788h"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_chigene_1_1_st = derive2 { name="pd.chigene.1.1.st"; version="3.12.0"; sha256="013baf38h35fsxq0f32v00rizik8iq76jm1s8azkicv90bvw5g8k"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_chogene_2_0_st = derive2 { name="pd.chogene.2.0.st"; version="3.12.0"; sha256="0pljjz466y2aav9045qgr5hbrv7alyl3gw3br4a8knbijk6fbw15"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_chogene_2_1_st = derive2 { name="pd.chogene.2.1.st"; version="3.12.0"; sha256="0d9pslimh0w37yvvfgqljbr2z5arjn6kx0wnjhp19gcch44jvkr2"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_citrus = derive2 { name="pd.citrus"; version="3.12.0"; sha256="1792gsxdr24264n121zvspdq39ac3khaghv5j66rn2nzqds75qch"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_clariom_d_human = derive2 { name="pd.clariom.d.human"; version="3.14.1"; sha256="11q4s4q07fpkl5wpmhhjfkrp4l8i8gy1i8wc80aar84lp1261vvx"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_clariom_s_human = derive2 { name="pd.clariom.s.human"; version="3.14.1"; sha256="0a68mnwv735mi9k9qxs2vv4hnh76yg1n7jjyaw34g8m7405yjxxp"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_clariom_s_human_ht = derive2 { name="pd.clariom.s.human.ht"; version="3.14.1"; sha256="08fzm8xp6wa4x03vqb28dvlz3hiwv2q5n5h9m2np0g4g40hbhg89"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_clariom_s_mouse = derive2 { name="pd.clariom.s.mouse"; version="3.14.1"; sha256="15fc25840lnhv0rlxc98akda1gis1s4xn61ycvymjii3lgx8hwpk"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_clariom_s_mouse_ht = derive2 { name="pd.clariom.s.mouse.ht"; version="3.14.1"; sha256="1ka9mganvymml306yh196rqan333ykrmqp9dfl4xs9mz57p405kk"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_clariom_s_rat = derive2 { name="pd.clariom.s.rat"; version="3.14.1"; sha256="1bx0vipcw3vjpz59h5820yanwy7b8mxb8bkgwp3n58vm24x7l304"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_clariom_s_rat_ht = derive2 { name="pd.clariom.s.rat.ht"; version="3.14.1"; sha256="17fk4qiznh2ks7r4mzbv1gnpjca39n6rzshb5dw5n73rbnd24160"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_cotton = derive2 { name="pd.cotton"; version="3.12.0"; sha256="1h71klvndi32j7hb7cy2w6asf7lb1xhs5glxajnd30y7ksigba7l"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_cyngene_1_0_st = derive2 { name="pd.cyngene.1.0.st"; version="3.12.0"; sha256="1xkv8m346x1zrnp4bhbjk2xwfq5jkbprbh417bya8swqvcyv3zbj"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_cyngene_1_1_st = derive2 { name="pd.cyngene.1.1.st"; version="3.12.0"; sha256="1kicrk0n2lik32q9nkpfy8ydh8klsy6i5cy6m2grddv80g5hc6n4"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_cyrgene_1_0_st = derive2 { name="pd.cyrgene.1.0.st"; version="3.12.0"; sha256="1s7rrwcmaar230y90hhvrx3wxlp228j88pwdh2glap2pn3d3rlnd"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_cyrgene_1_1_st = derive2 { name="pd.cyrgene.1.1.st"; version="3.12.0"; sha256="0p7j8ygyx8f5aqyy847rfcc35hrkcavi1700af971jjrha3gllc0"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_cytogenetics_array = derive2 { name="pd.cytogenetics.array"; version="3.12.0"; sha256="0gd7q64zfxda9irdmmr92iqxlswaj5v4pklsfm96xkn8lxq34dlb"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_drogene_1_0_st = derive2 { name="pd.drogene.1.0.st"; version="3.12.0"; sha256="1zp85q3a2bayr0q5r0ij62kfypzngcz9v791xsf9n9k7nx6714fi"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_drogene_1_1_st = derive2 { name="pd.drogene.1.1.st"; version="3.12.0"; sha256="0yjxjzmcx2hh6rm15p9d36vfj77fwmd7q2kbjk8h7hbpkm72ssdf"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_drosgenome1 = derive2 { name="pd.drosgenome1"; version="3.12.0"; sha256="1cp3fs2g88yv50gkd6m769idlj7kci2g82wafn17ci65g64q0g05"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_drosophila_2 = derive2 { name="pd.drosophila.2"; version="3.12.0"; sha256="0rr3l6203nfzhz21wps7dfcifvzmbnixcr2piv5jdfh7birj23aa"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_e_coli_2 = derive2 { name="pd.e.coli.2"; version="3.12.0"; sha256="1nny0w0adg433n1i20q0jdmi5yy1anpa91dgrklpvxyxbr5902vz"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_ecoli = derive2 { name="pd.ecoli"; version="3.12.0"; sha256="0mi5i0cp5xz97pb3ic6qmwl3fp4byyddvas2npll4ngarl5wv5ag"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_ecoli_asv2 = derive2 { name="pd.ecoli.asv2"; version="3.12.0"; sha256="19pn7691cr0vakxlx0q0x3p1pfc0z8l5f14475bv2fr4djljhhma"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_elegene_1_0_st = derive2 { name="pd.elegene.1.0.st"; version="3.12.0"; sha256="1if8gwvvk9jybsrcwr8sayg1czchpnlmysa9plrm50g7r2ki7m4l"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_elegene_1_1_st = derive2 { name="pd.elegene.1.1.st"; version="3.12.0"; sha256="18v3n3ss3rl2ksvjg1jk1w0mprhhxra55znixfcd8ikqsrdfj2a2"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_equgene_1_0_st = derive2 { name="pd.equgene.1.0.st"; version="3.12.0"; sha256="01vcj6a6hm9j2fbhrz244sbig63j1jyxyg068q4hizpl9lpzaibd"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_equgene_1_1_st = derive2 { name="pd.equgene.1.1.st"; version="3.12.0"; sha256="0migyzmrgqvvnkl8w61qv26hj5kjy720q4ipamdn99z9s4r8cxrn"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_feinberg_hg18_me_hx1 = derive2 { name="pd.feinberg.hg18.me.hx1"; version="0.99.3"; sha256="1k50khs7mrp1qy9z0whm5drwv59m8zn7v0zxhv26bpvmwbrnlhfg"; depends=[Biostrings IRanges oligo oligoClasses]; }; + pd_feinberg_mm8_me_hx1 = derive2 { name="pd.feinberg.mm8.me.hx1"; version="0.99.3"; sha256="1xk4rmpxjh9mwijwglzlycg7bk2zk599fk7xbnk114rj216y2jsm"; depends=[Biostrings IRanges oligo oligoClasses]; }; + pd_felgene_1_0_st = derive2 { name="pd.felgene.1.0.st"; version="3.12.0"; sha256="1lf3lp3zjprfwni2nfdpkvj2j6y7hd7znmxqcgj46vccznc49hh6"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_felgene_1_1_st = derive2 { name="pd.felgene.1.1.st"; version="3.12.0"; sha256="027cgqxfgmlkx64y6nm9h36ji781fkrnnrdxblh8h4jwjd5n36rj"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_fingene_1_0_st = derive2 { name="pd.fingene.1.0.st"; version="3.12.0"; sha256="0l19h920cghw65nqbh79s1rwijqdl7k84km0iv1fgx0kxhh28xa0"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_fingene_1_1_st = derive2 { name="pd.fingene.1.1.st"; version="3.12.0"; sha256="1habbw9fvygailw73azfrvczgp6ap1az688vz8pklqq77vlqs1qz"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_genomewidesnp_5 = derive2 { name="pd.genomewidesnp.5"; version="3.14.1"; sha256="1kiqmcc07q2m7hkgqczqndk7frpwibpsi2c0ihr5av0vjrp118ak"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_genomewidesnp_6 = derive2 { name="pd.genomewidesnp.6"; version="3.14.1"; sha256="1f35nw987axlc5rsr97i7rwcy1dd8zjjj6jf4cg75y0la6rvhfw4"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_guigene_1_0_st = derive2 { name="pd.guigene.1.0.st"; version="3.12.0"; sha256="1rq5gbdm6k0shv82zy7vrqxahzffh1xikrd3a6d1ai67n129bv6f"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_guigene_1_1_st = derive2 { name="pd.guigene.1.1.st"; version="3.12.0"; sha256="0p53kkhaa4d6ib32sfnwvs363zir227dmzxp8yqma0z4kz0djdna"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_hc_g110 = derive2 { name="pd.hc.g110"; version="3.12.0"; sha256="014bb45m2pwwbz7aca6l6442188mkp5bsk46z7x18g0aa66p06hv"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_hg_focus = derive2 { name="pd.hg.focus"; version="3.12.0"; sha256="1qlkhxq76nb55c299g7x7x8wn8nx1mg4ra5b0faflsjirkh4b32s"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_hg_u133_plus_2 = derive2 { name="pd.hg.u133.plus.2"; version="3.12.0"; sha256="02ip0mf24lw818ij8xgk7cylb5q1059jwvbdd2aynqqwy2mg31h0"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_hg_u133a = derive2 { name="pd.hg.u133a"; version="3.12.0"; sha256="08bk5im2zkb1vif1i6bgfx068xcl5q5m0ac33zpscfdq4jashm7k"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_hg_u133a_2 = derive2 { name="pd.hg.u133a.2"; version="3.12.0"; sha256="1rlh62r5zmxllkc9izr6a4yr2n88flfz1rybwvi90yggc788chxy"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_hg_u133a_tag = derive2 { name="pd.hg.u133a.tag"; version="3.12.0"; sha256="1ndjzcydshh5f3cnrav91hi47bx92z6rqliiwirhx2cqk8bvz5yp"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_hg_u133b = derive2 { name="pd.hg.u133b"; version="3.12.0"; sha256="1mafh53bj6g30869pdyl59040m2crqqbfcbdpdxfpigxpqr3rb4c"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_hg_u219 = derive2 { name="pd.hg.u219"; version="3.12.0"; sha256="04kqvh5ilf83z2iwvfw7m8xsgjxy29vqayp1lgh38y48j0nn24dk"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_hg_u95a = derive2 { name="pd.hg.u95a"; version="3.12.0"; sha256="1c7d16im1xxs8v0ccn19klwv43qr6b4iw0k5hz9cl8m10jmyw49b"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_hg_u95av2 = derive2 { name="pd.hg.u95av2"; version="3.12.0"; sha256="1l3y2bhjk67jwxvxwn5rngzn5c2dzk4lk24cm74f6px845qw5sk7"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_hg_u95b = derive2 { name="pd.hg.u95b"; version="3.12.0"; sha256="0gyxh7nagya1hgh5vvwalxmhbqm9pii3l6h1mndvx2ib58msh49h"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_hg_u95c = derive2 { name="pd.hg.u95c"; version="3.12.0"; sha256="0p9yrwjw75r5dg3z0pl4yr04agjpqv9rz3in2faw3pqawdzndihq"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_hg_u95d = derive2 { name="pd.hg.u95d"; version="3.12.0"; sha256="0ygfx73b122b468zvr9lhw2vkr1aijasrazarqjqc8bjbfm4fybw"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_hg_u95e = derive2 { name="pd.hg.u95e"; version="3.12.0"; sha256="0cksi811m9fzjq5linlsarfswp3p7rdgks0js3chv91jr3v2z3a7"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_hg18_60mer_expr = derive2 { name="pd.hg18.60mer.expr"; version="3.12.0"; sha256="1lsfsgsj6gyv0q509d0axr6g2yv226zxqh8f2n1hw0kfxwl27bm8"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_ht_hg_u133_plus_pm = derive2 { name="pd.ht.hg.u133.plus.pm"; version="3.12.0"; sha256="1000f1d28yzc0kcdf380fkx3xlgla3kn4n9f2ddawzjb7igash92"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_ht_hg_u133a = derive2 { name="pd.ht.hg.u133a"; version="3.12.0"; sha256="14bnnxsn02mpyynn8bvl8c47id9l2wfakngbvpq4h5yjy689jm1c"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_ht_mg_430a = derive2 { name="pd.ht.mg.430a"; version="3.12.0"; sha256="10shsap47217p6zmb9fn86na7if965h45l2r787cisgyyn9n45mq"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_hta_2_0 = derive2 { name="pd.hta.2.0"; version="3.12.2"; sha256="004mm93wag59arzirws3cfqjv4whl8sbv558xxg7pj1ar026g4m3"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_hu6800 = derive2 { name="pd.hu6800"; version="3.12.0"; sha256="07dj0avpx53kwaab9s126pn844nal9kn3h288n1m0kihir2mrjmv"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_huex_1_0_st_v2 = derive2 { name="pd.huex.1.0.st.v2"; version="3.14.1"; sha256="1chlvjy1gvw5r8hfmkb34m3h7w2z4s5x9gsc50qbj84988k4gzga"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_hugene_1_0_st_v1 = derive2 { name="pd.hugene.1.0.st.v1"; version="3.14.1"; sha256="1ikd6h7wnyxm11j0had2wcsxfbfrwdfw9605bvvdgd63dlvdv5dk"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_hugene_1_1_st_v1 = derive2 { name="pd.hugene.1.1.st.v1"; version="3.14.1"; sha256="0bsvwr4h8j4niagnmf7d2jd714dqk4yzdhr664z6vpx6429s0rsw"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_hugene_2_0_st = derive2 { name="pd.hugene.2.0.st"; version="3.14.1"; sha256="02m5x9mrz4ca0w84ljmdpw7rnlzqbqdq0q5k4sg7izx99k5c8r59"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_hugene_2_1_st = derive2 { name="pd.hugene.2.1.st"; version="3.14.1"; sha256="07la78206cvilfm8l2fwrcyy3gpwnhn0p32ilv043ln9drka2r8h"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_maize = derive2 { name="pd.maize"; version="3.12.0"; sha256="02viqnqf02d75sbarxh1k76966yay5i6wwdx118s4c9nlr5q6aqg"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_mapping250k_nsp = derive2 { name="pd.mapping250k.nsp"; version="3.12.0"; sha256="10j8c18glhvg07zp6w84hlc6l3a3qkvcvfnq0blpjfdk3a2lndz7"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_mapping250k_sty = derive2 { name="pd.mapping250k.sty"; version="3.12.0"; sha256="1hpyijrkr6svxxhrdp6s4jjcvr44hhbrdhrzvnw5ywpykmbphryc"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_mapping50k_hind240 = derive2 { name="pd.mapping50k.hind240"; version="3.12.0"; sha256="1whpjdr4aql846cm8nzgs613pi12qdqfixhqcfv8wrqyks27kq6s"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_mapping50k_xba240 = derive2 { name="pd.mapping50k.xba240"; version="3.12.0"; sha256="1a1f3lh5ywhyjawdbj2fzban85c8jz70lfcv3pagd5piincjwxq8"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_margene_1_0_st = derive2 { name="pd.margene.1.0.st"; version="3.12.0"; sha256="1s4l57hw511cnzj197jvvzqs8ymfbf14khxcv4llg55prxnvvnfc"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_margene_1_1_st = derive2 { name="pd.margene.1.1.st"; version="3.12.0"; sha256="067jv9486win2kv563gr4vpc96lpl02zqd09cnma7ycd7l1nvj9s"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_medgene_1_0_st = derive2 { name="pd.medgene.1.0.st"; version="3.12.0"; sha256="0f5blbhlp160av6r37icjdq2lyrvip09r4yzxhfa2vlxpcm7i83m"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_medgene_1_1_st = derive2 { name="pd.medgene.1.1.st"; version="3.12.0"; sha256="1mlyv6qjcxj9q416pmjq36q0aqp5l47pkd557ayaqd7gm3ygikcq"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_medicago = derive2 { name="pd.medicago"; version="3.12.0"; sha256="1wm81jr9d04yiyg0alj197fjigcvjhz2kvh8j6jw9yaawppr0c5p"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_mg_u74a = derive2 { name="pd.mg.u74a"; version="3.12.0"; sha256="1jji6g49icsxyam9qx3mbaspg24q0hjavi0w75k99m2ckmllc47c"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_mg_u74av2 = derive2 { name="pd.mg.u74av2"; version="3.12.0"; sha256="08ym915fb26qbz2r9kzgf7znai4mc06lr59l1da0x02iaixagg32"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_mg_u74b = derive2 { name="pd.mg.u74b"; version="3.12.0"; sha256="0yav9ghdk8y12bsqam2r0p4q3r1yymfwrz1kdg0l7qfzw3mn141d"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_mg_u74bv2 = derive2 { name="pd.mg.u74bv2"; version="3.12.0"; sha256="0hxczlax8qnghp4f7d3ph2y5j3vz3k4iwl6lyw3sig51msl4q6sd"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_mg_u74c = derive2 { name="pd.mg.u74c"; version="3.12.0"; sha256="13sq8jmwlqrci87bnl313dyqzy6v141r3fqzh1frl1w66ilw9chm"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_mg_u74cv2 = derive2 { name="pd.mg.u74cv2"; version="3.12.0"; sha256="1s59s9ch1ynrmnsn5jl2b19phij4qamgcpfs3f5zhji6ip41lckj"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_mirna_1_0 = derive2 { name="pd.mirna.1.0"; version="3.12.0"; sha256="0klkmrljgvkqvdlm07c47bl0jppbzz95ikxabfi8b3ajv78k6gn1"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_mirna_2_0 = derive2 { name="pd.mirna.2.0"; version="3.12.0"; sha256="12ynrrr0jrc0kl6s4pkn9fv3r3bh6wsbrfyywb5bvxf71n75wnqy"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_mirna_3_0 = derive2 { name="pd.mirna.3.0"; version="3.12.0"; sha256="0awghps8nlisdj2anvs400dn1hwdi8iw6xlrw17qr70fznbihdsy"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_mirna_3_1 = derive2 { name="pd.mirna.3.1"; version="3.8.1"; sha256="0g8fjwhxmps1w5f7lvnv258qn2ipggs1ar4r810amqqxd0yd5ah2"; depends=[Biostrings IRanges oligo oligoClasses]; }; + pd_mirna_4_0 = derive2 { name="pd.mirna.4.0"; version="3.12.0"; sha256="000gqhcvlpydrpr61853q22x8gvzmlf1kp7w98lll5g1vvwkw1ad"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_moe430a = derive2 { name="pd.moe430a"; version="3.12.0"; sha256="15qys3pm8nwkr385y8mj976k16as8r65lmzykm8cy0skl071i8wb"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_moe430b = derive2 { name="pd.moe430b"; version="3.12.0"; sha256="1xas3ld65xp2g1cfkd1n4v3yvx3g0g221c3ag550k552v0alfbyd"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_moex_1_0_st_v1 = derive2 { name="pd.moex.1.0.st.v1"; version="3.14.1"; sha256="13bqzbyqngbhj7yji568cc36fq0zw0bjaglfp2n9nnhdddd8b62x"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_mogene_1_0_st_v1 = derive2 { name="pd.mogene.1.0.st.v1"; version="3.14.1"; sha256="1hmb8kf91jd9q6b4pxiwlaj6ajzmkv1c3xsszyps5cwv13pgdjix"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_mogene_1_1_st_v1 = derive2 { name="pd.mogene.1.1.st.v1"; version="3.14.1"; sha256="13s7r8g29y56qbj2xm81r5kj65y2qcp5d24bakbhfcvz60wzljqf"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_mogene_2_0_st = derive2 { name="pd.mogene.2.0.st"; version="3.14.1"; sha256="0205jk6x8r35bmma771q6km631jlppm4y72zy85bv87dv4adxci8"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_mogene_2_1_st = derive2 { name="pd.mogene.2.1.st"; version="3.14.1"; sha256="14qwcq6yyy2ayrqv8kr33chlpgw3vkgq8iwb3yycsh3x3wz40jb8"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_mouse430_2 = derive2 { name="pd.mouse430.2"; version="3.12.0"; sha256="1ix7vkjy175cxbsbs67z38dhszxjik6370j0jkfpcknms6bh1db3"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_mouse430a_2 = derive2 { name="pd.mouse430a.2"; version="3.12.0"; sha256="11ywfshqxjmwf9q4sj97zv3ylynfkswcfaqglj883p4719lhxmc3"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_mta_1_0 = derive2 { name="pd.mta.1.0"; version="3.12.0"; sha256="07vznamds5lc1xnpv7kjwcrsd5zq0ap4gk8a85xqb93fmcc9ypqi"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_mu11ksuba = derive2 { name="pd.mu11ksuba"; version="3.12.0"; sha256="10fkys7y5b5frdrjqw3x2gqzp51lgg29nw6gxz25yi5fznc3nnv2"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_mu11ksubb = derive2 { name="pd.mu11ksubb"; version="3.12.0"; sha256="08734j3asq56v090zi0gzk3ryycjm78dfbb0xqmpr7ggqys96qp9"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_nugo_hs1a520180 = derive2 { name="pd.nugo.hs1a520180"; version="3.4.0"; sha256="1qc87zrrccld1hdqmrk1if98c6jq343gzlmib40wvshmrijp3sk3"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_nugo_mm1a520177 = derive2 { name="pd.nugo.mm1a520177"; version="3.4.0"; sha256="0568zvxc11w2i32wimhmi4271jbmpn97kb0vn4ns20hfg4h63m99"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_ovigene_1_0_st = derive2 { name="pd.ovigene.1.0.st"; version="3.12.0"; sha256="0vga20rb0v4yzd28szsppbgfhmn6ky85qrjj9llvacnlj1riwxsi"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_ovigene_1_1_st = derive2 { name="pd.ovigene.1.1.st"; version="3.12.0"; sha256="1vzrizvk1dbj6ngjxv9wpbm89q5mr8dkfhr0azrczs54c92xy48r"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_pae_g1a = derive2 { name="pd.pae.g1a"; version="3.12.0"; sha256="0b0bmzfrh7lm2i5d66z24iz0d5zj3qhw89aw011yssks7sr9lq90"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_plasmodium_anopheles = derive2 { name="pd.plasmodium.anopheles"; version="3.12.0"; sha256="0njd97jkg4hxd0jyq03227i00gmy0ccxznzqmp0mjqmkkhljn7nm"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_poplar = derive2 { name="pd.poplar"; version="3.12.0"; sha256="0j5xmf5hqvbb8ylsrvih92vxn1c1lah3mkffn64fji2lgqy9vjp9"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_porcine = derive2 { name="pd.porcine"; version="3.12.0"; sha256="0zx2gz90hhalaas3sf2rh8wcapjwmnckr0gq1r8p572chwf2rb81"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_porgene_1_0_st = derive2 { name="pd.porgene.1.0.st"; version="3.12.0"; sha256="1jiajzn31yjzs942w3i4cjqlpq81rkbryk961fqb9jpwldzg1pmy"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_porgene_1_1_st = derive2 { name="pd.porgene.1.1.st"; version="3.12.0"; sha256="038zwlckx58bw4x5naspfnvk4jcyc2g9bijrh1wd4m4k5mr1i4dk"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_rabgene_1_0_st = derive2 { name="pd.rabgene.1.0.st"; version="3.12.0"; sha256="0vwxzwgwh1a0fpyqsc3mnagin67wf2jmymm9kwhcnxargpmslm7k"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_rabgene_1_1_st = derive2 { name="pd.rabgene.1.1.st"; version="3.12.0"; sha256="0qs3ka3pdlrpqh66zb62jdfm2y6p2wyn6rcp7gb5qw0s8q9h170a"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_rae230a = derive2 { name="pd.rae230a"; version="3.12.0"; sha256="14kb35pcgxh2hmpzyqp9c2xirs0p6y5dvc3h2n568jmmdd14s7j5"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_rae230b = derive2 { name="pd.rae230b"; version="3.12.0"; sha256="1db6bm6qyrzwwa2scyw6qg7qcdqq97s5vy8kv0fnqc604b1jdzzq"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_raex_1_0_st_v1 = derive2 { name="pd.raex.1.0.st.v1"; version="3.14.1"; sha256="11sxhhpb4fy7wh5k7yxwwv141xgn4r1yshx097wicpa6561ffdkc"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_ragene_1_0_st_v1 = derive2 { name="pd.ragene.1.0.st.v1"; version="3.14.1"; sha256="0afnv1f5xvdh1vdsdfi5k1zscqzpdbf4b399wib3c8dg9vslccgx"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_ragene_1_1_st_v1 = derive2 { name="pd.ragene.1.1.st.v1"; version="3.14.1"; sha256="1krygwjhqs97gyh94xfbsfd8gg285fg5bgm7rqk7wlwp8fxx8xnn"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_ragene_2_0_st = derive2 { name="pd.ragene.2.0.st"; version="3.14.1"; sha256="1rq4ivv107853pyr4jrnbms4fgfzddndibrasgql9d4msca0sbz9"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_ragene_2_1_st = derive2 { name="pd.ragene.2.1.st"; version="3.14.1"; sha256="1k9zqhnck7fgp6g0b8vmasqjvdyqshzs567rz8qabw6jk5ifssvz"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_rat230_2 = derive2 { name="pd.rat230.2"; version="3.12.0"; sha256="0ysn0qi26b3llqs312an0mlgyahf4pgmixlcq2x2n925drns34gg"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_rcngene_1_0_st = derive2 { name="pd.rcngene.1.0.st"; version="3.12.0"; sha256="0hrhvy6dbw8g1h9qgm9frpmfp45pd5h0fnbvbvz94l98a5gda7xx"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_rcngene_1_1_st = derive2 { name="pd.rcngene.1.1.st"; version="3.12.0"; sha256="1lyizr096x5idasvlivl3lb67g7n2xvblrk5zfxglaf2fgpbrgwn"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_rg_u34a = derive2 { name="pd.rg.u34a"; version="3.12.0"; sha256="18jl5w1say8zyp50iqmd6jiw8ffa7qsk6sw7h7cw0j1g90ssf4y3"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_rg_u34b = derive2 { name="pd.rg.u34b"; version="3.12.0"; sha256="19v2g9lvadvba2dy0c0qn6j8qnsds2xa4cliiq12byad21833ss0"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_rg_u34c = derive2 { name="pd.rg.u34c"; version="3.12.0"; sha256="10j3hcszx637dfd55552b75qni0yryrjk8q6p0wkd5dh6p628qrx"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_rhegene_1_0_st = derive2 { name="pd.rhegene.1.0.st"; version="3.12.0"; sha256="1mx221xvxr4ng01ibq1pc472bn5rknfv3sjsbvvfmvqgpwk6z079"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_rhegene_1_1_st = derive2 { name="pd.rhegene.1.1.st"; version="3.12.0"; sha256="0f400qal4qmkxv705n5bzz07rkrz5zgs7swk8xp4pyp161fgb171"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_rhesus = derive2 { name="pd.rhesus"; version="3.12.0"; sha256="1zrpq7ppl2gaiprvz4sm0zsxqcw2nvn6qzwi3b0cimqf7r2091dd"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_rice = derive2 { name="pd.rice"; version="3.12.0"; sha256="0fmd505vianfspb1s5glr6aacnz45dq9skbk1qwm0a9ck6a6paav"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_rjpgene_1_0_st = derive2 { name="pd.rjpgene.1.0.st"; version="3.12.0"; sha256="18qj6sdjw17553lwcb3swdx0aiv54izdzzblgl88g90ijny8rbpa"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_rjpgene_1_1_st = derive2 { name="pd.rjpgene.1.1.st"; version="3.12.0"; sha256="0i99fyf6ya13z4hfjf3f5ssvys8wjhmwk894zy0p59p7nmphigyc"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_rn_u34 = derive2 { name="pd.rn.u34"; version="3.12.0"; sha256="0ayp6r7z7p61b1lfq9dkq4ips4apgjg6igrcnvsivlfhcfcfs0wf"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_rta_1_0 = derive2 { name="pd.rta.1.0"; version="3.12.2"; sha256="0x3j1a47lxhlqnhfvh1cii11rd433x16i6xmydwq2dkvm4xgd63h"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_rusgene_1_0_st = derive2 { name="pd.rusgene.1.0.st"; version="3.12.0"; sha256="1ik28yykkpdclr5hrv8lzafzfivakwvzgz49q7bpb1g6ihwylshw"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_rusgene_1_1_st = derive2 { name="pd.rusgene.1.1.st"; version="3.12.0"; sha256="090lxwxzj39d6qzlr7c3x50zf98g8x987rv1gdn0gcas15imya6n"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_s_aureus = derive2 { name="pd.s.aureus"; version="3.12.0"; sha256="0kszw94ymxgwd3midzkpl307ch3pyr4g5qjcf4s2jsq6mrvxw666"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_soybean = derive2 { name="pd.soybean"; version="3.12.0"; sha256="0xg90m7k1x9sgmhcp1qdwhxsyr2y5g28p7a4z6gd6mng2l7cgyh0"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_soygene_1_0_st = derive2 { name="pd.soygene.1.0.st"; version="3.12.0"; sha256="1hg90pma4ikdgxpw1f5mkjcw7na4mmjbhpr06dcssjl3bvmd4yxc"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_soygene_1_1_st = derive2 { name="pd.soygene.1.1.st"; version="3.12.0"; sha256="0978vbl59afgrzy0cmwq4mhsdz5rn5d929nz90fvczm6q8g24616"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_sugar_cane = derive2 { name="pd.sugar.cane"; version="3.12.0"; sha256="09m8m99l9mrhs4gr1rb02l54k8i2wgdzz88qlbpl4xmrfnfn99h6"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_tomato = derive2 { name="pd.tomato"; version="3.12.0"; sha256="12jn8i691j3kkgwa771f4kffzfcxv19vi0waw13akch7x7cc09q7"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_u133_x3p = derive2 { name="pd.u133.x3p"; version="3.12.0"; sha256="171rv9syn90k70ivaj8c48s827c08nycpyyc2b76jy405kaqb1gl"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_vitis_vinifera = derive2 { name="pd.vitis.vinifera"; version="3.12.0"; sha256="19r2k7wx3kygw6syqph24glw0b273gpi0z0y8n4bnd3a184g6hxz"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_wheat = derive2 { name="pd.wheat"; version="3.12.0"; sha256="12n8k5ah8fncbrb2hrpi2ah29fj5rxnh5j5zk8lfwhijg2zf52ra"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_x_laevis_2 = derive2 { name="pd.x.laevis.2"; version="3.12.0"; sha256="0zf3rc8rz05hzga2g5b8khszz6sr29dlp8z1jyn94ial284d0fn3"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_x_tropicalis = derive2 { name="pd.x.tropicalis"; version="3.12.0"; sha256="1pb6jm14k0g4z9vffi3clyh7rwc11c89hinb2amczg4xfm5lqrdr"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_xenopus_laevis = derive2 { name="pd.xenopus.laevis"; version="3.12.0"; sha256="1fxd95ak5s2dw16prxdwk20hisss32nywy9dc7y72bpqrv0v309y"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_yeast_2 = derive2 { name="pd.yeast.2"; version="3.12.0"; sha256="0l6sxg79xmlb7gdxx4bx24l35jgx5y2qfp3pxzcmdnd7c7qy6z5j"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_yg_s98 = derive2 { name="pd.yg.s98"; version="3.12.0"; sha256="1krx7kkjlyc41739c349z0sdbslp19iqfai0xzy6f4jk15524vhj"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_zebgene_1_0_st = derive2 { name="pd.zebgene.1.0.st"; version="3.12.0"; sha256="1vywph8shn23k0s8jmvx34rj34y1zxgwcssjnzbipm71f2sa15hw"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_zebgene_1_1_st = derive2 { name="pd.zebgene.1.1.st"; version="3.12.0"; sha256="0xs3kx7l78dfqkasgz8n5s8qjia5qhdcnj1l8al0ivy8mwvlpyxs"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_zebrafish = derive2 { name="pd.zebrafish"; version="3.12.0"; sha256="0gg7y7w51pv0vf39qzyaf09wl3vxy222nr69zgxg7cylwxmaky7v"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; pedbarrayv10_db = derive2 { name="pedbarrayv10.db"; version="3.2.3"; sha256="01sn7qh5r2c2ph7gqirlzlplxscsmczf7ajffd9rsx59932f71kx"; depends=[AnnotationDbi org_Hs_eg_db]; }; pedbarrayv9_db = derive2 { name="pedbarrayv9.db"; version="3.2.3"; sha256="0x9m9m4nmdhc0j5244avmlfwljcpw0sh44l1b00cx05swi3vmjlp"; depends=[AnnotationDbi org_Hs_eg_db]; }; phastCons100way_UCSC_hg19 = derive2 { name="phastCons100way.UCSC.hg19"; version="3.7.2"; sha256="1jmc4k4zgkx5vr2plnidnd9bidlwlb0kr7mjg60cqjw7dq7jl1fa"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; @@ -868,7 +868,7 @@ in with self; { sugarcanecdf = derive2 { name="sugarcanecdf"; version="2.18.0"; sha256="0wghc6wr7iwkql63m3wibjjdcdpqd53z0g5rxdh553sjb0ca2n7z"; depends=[AnnotationDbi]; }; sugarcaneprobe = derive2 { name="sugarcaneprobe"; version="2.18.0"; sha256="17zrydd8xd7m61bp750xlpcak0m3zgl0mvknz9s7mv2a35kp02ih"; depends=[AnnotationDbi]; }; synaptome_data = derive2 { name="synaptome.data"; version="0.99.3"; sha256="08j7arr8lhm17ikhxxg6f8vx45ixchvh33f2wla2486dvd160pw4"; depends=[AnnotationHub]; }; - synaptome_db = derive2 { name="synaptome.db"; version="0.99.8"; sha256="0g7pah9q1ci0ykm1lf3gdssfxmc33qkc5y428wdb8fzirqh5csx4"; depends=[AnnotationHub DBI dbplyr dplyr igraph Rdpack RSQLite synaptome_data]; }; + synaptome_db = derive2 { name="synaptome.db"; version="0.99.8"; sha256="0g7pah9q1ci0ykm1lf3gdssfxmc33qkc5y428wdb8fzirqh5csx4"; depends=[AnnotationHub synaptome_data]; }; targetscan_Hs_eg_db = derive2 { name="targetscan.Hs.eg.db"; version="0.6.1"; sha256="1p14jyhn1d2m6kww9vsb96263g8crnrff7qgyiz46pp9ww8mvxf4"; depends=[AnnotationDbi]; }; targetscan_Mm_eg_db = derive2 { name="targetscan.Mm.eg.db"; version="0.6.1"; sha256="0ad6vxpwn9x82qcrpwcy1lwg0q3ik4vabxn01k6gwmbpvydz9cf5"; depends=[AnnotationDbi]; }; test1cdf = derive2 { name="test1cdf"; version="2.18.0"; sha256="0nmkrp4b2p09pg8ndcnfv5y7w94xah6fa5pff60dp1s2s8dcgcr4"; depends=[AnnotationDbi]; }; diff --git a/pkgs/development/r-modules/bioc-experiment-packages.nix b/pkgs/development/r-modules/bioc-experiment-packages.nix index 113b28ceeaa3..20f26e76e64f 100644 --- a/pkgs/development/r-modules/bioc-experiment-packages.nix +++ b/pkgs/development/r-modules/bioc-experiment-packages.nix @@ -22,8 +22,8 @@ in with self; { AssessORFData = derive2 { name="AssessORFData"; version="1.12.0"; sha256="0v9xlm2wxlarbhj57jacn52hlxxylyfmr1gwmkss2pzw3hjyi4v1"; depends=[DECIPHER]; }; BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.32.0"; sha256="1zl54rg50v1m19fln1j1a3a22xi989sj8kk7ccjjgjhybsrvyi0r"; depends=[beadarray GEOquery limma]; }; BeadSorted_Saliva_EPIC = derive2 { name="BeadSorted.Saliva.EPIC"; version="1.2.0"; sha256="0fmjqwwnxlfpwl6ldhq92w9cxf4x4fcm349xk3jx8q8mj20zfsm1"; depends=[ExperimentHub minfi]; }; - BioImageDbs = derive2 { name="BioImageDbs"; version="1.2.0"; sha256="0ldpbjdj5xhh7sxkjrxgp7b5yayfjvw5yah4dxgbrmw37hqssd3q"; depends=[animation EBImage einsum ExperimentHub filesstrings magick magrittr markdown rmarkdown]; }; - BloodCancerMultiOmics2017 = derive2 { name="BloodCancerMultiOmics2017"; version="1.14.0"; sha256="1nx55qhkkjvmljby04wn0fmbgcrdmqxqgxf5h4dasw884msfha4d"; depends=[beeswarm Biobase DESeq2 devtools dplyr ggdendro ggplot2 glmnet gtable ipflasso RColorBrewer reshape2 scales SummarizedExperiment survival tibble]; }; + BioImageDbs = derive2 { name="BioImageDbs"; version="1.2.0"; sha256="0ldpbjdj5xhh7sxkjrxgp7b5yayfjvw5yah4dxgbrmw37hqssd3q"; depends=[EBImage ExperimentHub]; }; + BloodCancerMultiOmics2017 = derive2 { name="BloodCancerMultiOmics2017"; version="1.14.0"; sha256="1nx55qhkkjvmljby04wn0fmbgcrdmqxqgxf5h4dasw884msfha4d"; depends=[Biobase DESeq2 SummarizedExperiment]; }; CCl4 = derive2 { name="CCl4"; version="1.32.0"; sha256="1ljjj2fk4cji4aw2j8kf4rjgfjfbdyg8sfhvahvpyqgqwvmsmdx5"; depends=[Biobase limma]; }; CLL = derive2 { name="CLL"; version="1.34.0"; sha256="017kjpv5rqn6vg3d4drnxj7arjxqw1hw1lxx9p0bdzr2isahcs6g"; depends=[affy Biobase]; }; CLLmethylation = derive2 { name="CLLmethylation"; version="1.14.0"; sha256="1b3pbf3rzrl9by95gkmj3ssd1qms3hm24s1ds286jvps1y8gq97m"; depends=[ExperimentHub SummarizedExperiment]; }; @@ -35,36 +35,36 @@ in with self; { CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.26.0"; sha256="1mk7xwxxw08wv9xnmk9szm7a90di2lp1wb35a206jr7kb3m4zx2i"; depends=[Cardinal]; }; CellMapperData = derive2 { name="CellMapperData"; version="1.20.0"; sha256="143x9j5shnqz1s816gwi7q79np38gwq0iccc9sdl8yvxhjdw0079"; depends=[CellMapper ExperimentHub]; }; ChAMPdata = derive2 { name="ChAMPdata"; version="2.26.0"; sha256="1zgikb6milp77kcfbizqc5ja94n6zx7pm77rg20j4v5nvpff7lh8"; depends=[BiocGenerics GenomicRanges]; }; - ChIC_data = derive2 { name="ChIC.data"; version="1.14.0"; sha256="1la6z7rd2h8annymgvybrrw31af37pqydp5wj32bpz6fcz21bx7h"; depends=[caret genomeIntervals randomForest]; }; - ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.32.0"; sha256="0hbw1asyajqmshw0j897ss60yl350jl48pywnyvhkaws8bz1iina"; depends=[bigmemory]; }; + ChIC_data = derive2 { name="ChIC.data"; version="1.14.0"; sha256="1la6z7rd2h8annymgvybrrw31af37pqydp5wj32bpz6fcz21bx7h"; depends=[genomeIntervals]; }; + ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.32.0"; sha256="0hbw1asyajqmshw0j897ss60yl350jl48pywnyvhkaws8bz1iina"; depends=[]; }; ChIPexoQualExample = derive2 { name="ChIPexoQualExample"; version="1.18.0"; sha256="1q6lg5dkvmwfjaw771x008ipzynd0jhap97rnkmcivsf84sw03nb"; depends=[]; }; - ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.32.0"; sha256="0z7hxd7nsg1p3z1min5dcdbwgz9n3p7saad0mmvj7388g48fqwc3"; depends=[affy hexbin limma qvalue statmod]; }; + ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.32.0"; sha256="0z7hxd7nsg1p3z1min5dcdbwgz9n3p7saad0mmvj7388g48fqwc3"; depends=[affy limma qvalue]; }; CluMSIDdata = derive2 { name="CluMSIDdata"; version="1.10.0"; sha256="1rxs2lyz5rz3zjl4z34n8iag76ks6gjaalh2adzs6dy9xnzbjnpm"; depends=[]; }; ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.30.0"; sha256="06dbyh9d7i11rzm13i0pnpn8qhd9kia8my15vs7m26cmf9b53z4j"; depends=[]; }; - CopyNeutralIMA = derive2 { name="CopyNeutralIMA"; version="1.12.0"; sha256="0kkjbw1aw0fbj5mgbxq1s811v9c5fgbiv6h5qj41cp8rbghf99lp"; depends=[ExperimentHub Rdpack]; }; + CopyNeutralIMA = derive2 { name="CopyNeutralIMA"; version="1.12.0"; sha256="0kkjbw1aw0fbj5mgbxq1s811v9c5fgbiv6h5qj41cp8rbghf99lp"; depends=[ExperimentHub]; }; CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.26.0"; sha256="1zsp03s6crrq1awhwqnn94lpmww7iraymjjxb7195b6cyyljf4ai"; depends=[]; }; - DAPARdata = derive2 { name="DAPARdata"; version="1.24.0"; sha256="1wxgcdkz6vsicak21z9ibknqqmj7jka00rkprjav8vyw30jgrgl0"; depends=[knitr MSnbase]; }; + DAPARdata = derive2 { name="DAPARdata"; version="1.24.0"; sha256="1wxgcdkz6vsicak21z9ibknqqmj7jka00rkprjav8vyw30jgrgl0"; depends=[MSnbase]; }; DExMAdata = derive2 { name="DExMAdata"; version="1.2.0"; sha256="1wlh9gsrkd6njx5g5g2q2i7mqznfmy0cd1p7r18lf8v65mn3k0bi"; depends=[Biobase]; }; DLBCL = derive2 { name="DLBCL"; version="1.34.0"; sha256="1y23bk5ywkdw57a6y4sgwz1h4jm81djxnhxw7xp9xdv1kwg6p8fj"; depends=[Biobase]; }; - DMRcatedata = derive2 { name="DMRcatedata"; version="2.12.0"; sha256="0z5jlmarvakmq5vl8pyym544xsy8rds1fprvjy0s8q6iw2y3iknb"; depends=[ExperimentHub GenomicFeatures Gviz IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 plyr readxl rtracklayer]; }; + DMRcatedata = derive2 { name="DMRcatedata"; version="2.12.0"; sha256="0z5jlmarvakmq5vl8pyym544xsy8rds1fprvjy0s8q6iw2y3iknb"; depends=[ExperimentHub GenomicFeatures Gviz IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 rtracklayer]; }; DREAM4 = derive2 { name="DREAM4"; version="1.30.0"; sha256="0gr0n8j4a347c5wwnpq2z2gxpvxv3swfhhlj3izc8rdyw11cf41v"; depends=[SummarizedExperiment]; }; - DeSousa2013 = derive2 { name="DeSousa2013"; version="1.30.0"; sha256="1lkzzamwby4xfjj7ffnhmnxcwjaspvr7z3ijwrymd2pky46pq143"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; }; - DmelSGI = derive2 { name="DmelSGI"; version="1.26.0"; sha256="0zii8zrqlmcl1cvdvsiikah0yg7h2ssj571j7fgh3cz95c9mdjhf"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; }; + DeSousa2013 = derive2 { name="DeSousa2013"; version="1.30.0"; sha256="1lkzzamwby4xfjj7ffnhmnxcwjaspvr7z3ijwrymd2pky46pq143"; depends=[affy AnnotationDbi Biobase ConsensusClusterPlus frma frmaTools hgu133plus2_db hgu133plus2frmavecs siggenes sva]; }; + DmelSGI = derive2 { name="DmelSGI"; version="1.26.0"; sha256="0zii8zrqlmcl1cvdvsiikah0yg7h2ssj571j7fgh3cz95c9mdjhf"; depends=[limma rhdf5]; }; DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.32.0"; sha256="0dnp01n5lmssb7pxyrgx0ks9cxkb5xk6ni3n5f3l6gc6a0lrv9zz"; depends=[EBImage]; }; DropletTestFiles = derive2 { name="DropletTestFiles"; version="1.4.0"; sha256="10928x20i84f81ma6wdxkkii1l0pah2wbxvj8ady4gm04s7klvnb"; depends=[AnnotationHub ExperimentHub S4Vectors]; }; DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.30.0"; sha256="10w2sj29bchry0w4340s48944kxy764wbp680a27jfcw0phwqw1n"; depends=[]; }; - DuoClustering2018 = derive2 { name="DuoClustering2018"; version="1.12.0"; sha256="0x9nlhjfks2n834x9acmcw2hdlpqxw7ac1gqdwiphcdkzwwnpfmy"; depends=[dplyr ExperimentHub ggplot2 ggthemes magrittr mclust purrr reshape2 tidyr viridis]; }; + DuoClustering2018 = derive2 { name="DuoClustering2018"; version="1.12.0"; sha256="0x9nlhjfks2n834x9acmcw2hdlpqxw7ac1gqdwiphcdkzwwnpfmy"; depends=[ExperimentHub]; }; DvDdata = derive2 { name="DvDdata"; version="1.30.0"; sha256="18as6sqfsfwgry1pm47h716c1nhcjfn82g6r9r3zs5kcvpr4phs7"; depends=[]; }; EGSEAdata = derive2 { name="EGSEAdata"; version="1.22.0"; sha256="1qzc6ir1w6s2l2kw1mb8l1sxc053f8bp5b9nllybbkpa7ialcz8y"; depends=[]; }; ELMER_data = derive2 { name="ELMER.data"; version="2.18.0"; sha256="00cnici4cnp5sw8ll9xvx1zw5qkjixyp5zffllw7qxp2q4v709z3"; depends=[GenomicRanges]; }; EatonEtAlChIPseq = derive2 { name="EatonEtAlChIPseq"; version="0.32.0"; sha256="12b40z3b4h9681zvyxkaycb26y7slgkqhjx2kwn793qaf5bhgabc"; depends=[GenomicRanges rtracklayer ShortRead]; }; FANTOM3and4CAGE = derive2 { name="FANTOM3and4CAGE"; version="1.30.0"; sha256="1y8q8clhxqyy5zdsnv084jzjaslpzlkl0502i3i7ang7g6xh0f8n"; depends=[]; }; FIs = derive2 { name="FIs"; version="1.22.0"; sha256="0zj3z7rk88s2jchrdkf6rq3ksnhlzg9h86n38kjyv6qbr6hifgkd"; depends=[]; }; - FieldEffectCrc = derive2 { name="FieldEffectCrc"; version="1.4.0"; sha256="09wphzb2ycp9hlqz5qjmw4r2vwm4fgsjyvcwsvqy0d4k725gkxjd"; depends=[AnnotationHub BiocStyle DESeq2 ExperimentHub RUnit SummarizedExperiment]; }; - Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.30.0"; sha256="0w60h8xcp1rp4lvq87qfqbj0f497jc4w54463wnac6dbph8bsda3"; depends=[Biobase gplots limma VennDiagram]; }; - Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.30.0"; sha256="1fs6h0dmvigzkqn5iqfzq84zz2dv983w5mwj2bwbq3b9iclc30dg"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; }; + FieldEffectCrc = derive2 { name="FieldEffectCrc"; version="1.4.0"; sha256="09wphzb2ycp9hlqz5qjmw4r2vwm4fgsjyvcwsvqy0d4k725gkxjd"; depends=[AnnotationHub BiocStyle DESeq2 ExperimentHub SummarizedExperiment]; }; + Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.30.0"; sha256="0w60h8xcp1rp4lvq87qfqbj0f497jc4w54463wnac6dbph8bsda3"; depends=[Biobase limma]; }; + Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.30.0"; sha256="1fs6h0dmvigzkqn5iqfzq84zz2dv983w5mwj2bwbq3b9iclc30dg"; depends=[Fletcher2013a RedeR RTN]; }; FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.32.0"; sha256="1js5ibv4kcs5q8xwcla6pz5na7ys7f8h59s91djv8l3g8fl5v0c1"; depends=[minfi]; }; - FlowSorted_Blood_EPIC = derive2 { name="FlowSorted.Blood.EPIC"; version="1.12.1"; sha256="0i8mb6cbdh5gnbp38dsk5qsyx50a1dpsnvjl46q6bx1bdfchzfh0"; depends=[ExperimentHub genefilter IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi nlme quadprog S4Vectors SummarizedExperiment]; }; + FlowSorted_Blood_EPIC = derive2 { name="FlowSorted.Blood.EPIC"; version="1.12.1"; sha256="0i8mb6cbdh5gnbp38dsk5qsyx50a1dpsnvjl46q6bx1bdfchzfh0"; depends=[ExperimentHub genefilter IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi S4Vectors SummarizedExperiment]; }; FlowSorted_CordBlood_450k = derive2 { name="FlowSorted.CordBlood.450k"; version="1.22.0"; sha256="0kb380hq9m90jspgccl68hxxvkslxf67isb0w86x6glpsz8q0bgf"; depends=[minfi]; }; FlowSorted_CordBloodCombined_450k = derive2 { name="FlowSorted.CordBloodCombined.450k"; version="1.10.0"; sha256="0xggjhqkd7j0rfypx5armarmvkhl5a1f7fw0iwygrdg5g4804n3j"; depends=[ExperimentHub FlowSorted_Blood_EPIC IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi SummarizedExperiment]; }; FlowSorted_CordBloodNorway_450k = derive2 { name="FlowSorted.CordBloodNorway.450k"; version="1.20.0"; sha256="0yqjy03lf2ihvw3r9pz5cz67rr07i8n8n7dnmzvcbvgvjb98g82p"; depends=[minfi]; }; @@ -77,15 +77,15 @@ in with self; { GSE62944 = derive2 { name="GSE62944"; version="1.22.0"; sha256="17dp87ahfch4jmw1d21s20zr28a0qxnw6ly7r7czis1fxxnc2nhi"; depends=[Biobase GEOquery]; }; GSVAdata = derive2 { name="GSVAdata"; version="1.30.0"; sha256="1yscdsjjq0dyjgx4mws97z5inxlp68gd37haza7k4q9hrdrg2qyc"; depends=[Biobase GSEABase hgu95a_db]; }; GWASdata = derive2 { name="GWASdata"; version="1.32.0"; sha256="05inid2ch6c7idyp4awvpfdw867mhnsl2k06k0bw0h8hhwnqpssk"; depends=[GWASTools]; }; - GenomicDistributionsData = derive2 { name="GenomicDistributionsData"; version="1.2.0"; sha256="0kiqhqc9c46l76spc0fws9qrzhs3dyf2n8nhzq2zjbvxpbnm7hk0"; depends=[AnnotationFilter AnnotationHub BSgenome data_table ensembldb ExperimentHub GenomeInfoDb GenomicFeatures GenomicRanges]; }; + GenomicDistributionsData = derive2 { name="GenomicDistributionsData"; version="1.2.0"; sha256="0kiqhqc9c46l76spc0fws9qrzhs3dyf2n8nhzq2zjbvxpbnm7hk0"; depends=[AnnotationFilter AnnotationHub BSgenome ensembldb ExperimentHub GenomeInfoDb GenomicFeatures GenomicRanges]; }; GeuvadisTranscriptExpr = derive2 { name="GeuvadisTranscriptExpr"; version="1.22.0"; sha256="0hdpwqbsj4fyg5cbg8zb0gaw1f2w8wxk6b9f3zf6lg3h1grr23p0"; depends=[]; }; HCAData = derive2 { name="HCAData"; version="1.10.0"; sha256="0l84d13sz6ai87rrv0jvssbvwb8jrrdn6k9l35phxhh78zbl0w1b"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; - HD2013SGI = derive2 { name="HD2013SGI"; version="1.34.0"; sha256="1k7igh15bmcqr1ar3xcpiam7wypvkcazswjs97r44m9ib8xjm93y"; depends=[EBImage geneplotter gplots limma LSD RColorBrewer splots vcd]; }; + HD2013SGI = derive2 { name="HD2013SGI"; version="1.34.0"; sha256="1k7igh15bmcqr1ar3xcpiam7wypvkcazswjs97r44m9ib8xjm93y"; depends=[EBImage geneplotter limma splots]; }; HDCytoData = derive2 { name="HDCytoData"; version="1.14.0"; sha256="0n1kk4g1agclpmvxy6mqzmik1d5ba3s7q6w5fsmryxbmdslaqgdr"; depends=[ExperimentHub flowCore SummarizedExperiment]; }; HEEBOdata = derive2 { name="HEEBOdata"; version="1.32.0"; sha256="1nf388mj6iw8z6kx7vwzvmkqcf2xp3srinh8af0rdj97571rqm19"; depends=[]; }; HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.34.0"; sha256="12dkiif41ailb9bmclk215s9hrl3xsh7w5m6ms799g4lr21hpm4c"; depends=[]; }; - HMP16SData = derive2 { name="HMP16SData"; version="1.14.0"; sha256="12xq1vvxvv16y9szfs5qzmkpi8v8v67vm6yln3kda43x1wfc1naz"; depends=[AnnotationHub assertthat dplyr ExperimentHub kableExtra knitr magrittr readr S4Vectors stringr SummarizedExperiment tibble]; }; - HMP2Data = derive2 { name="HMP2Data"; version="1.8.0"; sha256="1h4lyxva5hzvdknr7pndq49js0yz62anshaq1apdm3zcga979c2z"; depends=[AnnotationHub assertthat data_table dplyr ExperimentHub kableExtra knitr magrittr MultiAssayExperiment phyloseq readr S4Vectors SummarizedExperiment]; }; + HMP16SData = derive2 { name="HMP16SData"; version="1.14.0"; sha256="12xq1vvxvv16y9szfs5qzmkpi8v8v67vm6yln3kda43x1wfc1naz"; depends=[AnnotationHub ExperimentHub S4Vectors SummarizedExperiment]; }; + HMP2Data = derive2 { name="HMP2Data"; version="1.8.0"; sha256="1h4lyxva5hzvdknr7pndq49js0yz62anshaq1apdm3zcga979c2z"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment phyloseq S4Vectors SummarizedExperiment]; }; HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="1.14.0"; sha256="0z1iid7q5aj429npfmszhx1na4rbx4kzw47dk4153lq63zapdig9"; depends=[]; }; HarmanData = derive2 { name="HarmanData"; version="1.22.0"; sha256="0dk8anr68c3p8c88xqpvy3v46vgk2w9zdcw0ikg1593xsdhpzp1k"; depends=[]; }; HarmonizedTCGAData = derive2 { name="HarmonizedTCGAData"; version="1.16.0"; sha256="1ar9m9qkbxbg0n0acv96am6nsvy7gv85787vp3qhdvdq6cmzf39g"; depends=[ExperimentHub]; }; @@ -93,9 +93,9 @@ in with self; { HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="1.14.0"; sha256="1kcaf2slwrm1s6y29n1za5aadzh7hqmiyb9zq9w5k9inxqhdbmg8"; depends=[]; }; HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.30.0"; sha256="0xqyjj64sqlh5zynqi56nr2jzc4r558bviqiybgv9zxq1m3pqddg"; depends=[]; }; HighlyReplicatedRNASeq = derive2 { name="HighlyReplicatedRNASeq"; version="1.6.0"; sha256="059sm5lwx2k3h8p2j07k7vg3p85nbgszpfp7q14c1wc350cm275c"; depends=[ExperimentHub S4Vectors SummarizedExperiment]; }; - Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.30.0"; sha256="1lyb33rlaciicz6nj4w5jydgvbib9bi45z3676y78dajpvd8gsmb"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; }; + Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.30.0"; sha256="1lyb33rlaciicz6nj4w5jydgvbib9bi45z3676y78dajpvd8gsmb"; depends=[affy Biobase genefilter geneplotter KEGGREST mouse4302_db]; }; HumanAffyData = derive2 { name="HumanAffyData"; version="1.20.0"; sha256="0xvy3vhdi9d944cij15k0yz3gja910kfxrrm29d9m85ga06nzzs1"; depends=[Biobase ExperimentHub]; }; - IHWpaper = derive2 { name="IHWpaper"; version="1.22.0"; sha256="05hppzncnyn8ngr8iy975pmb5y0sq6m1510q8jh3dixwr5vk5zyf"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; }; + IHWpaper = derive2 { name="IHWpaper"; version="1.22.0"; sha256="05hppzncnyn8ngr8iy975pmb5y0sq6m1510q8jh3dixwr5vk5zyf"; depends=[Biobase BiocGenerics BiocParallel DESeq2 genefilter IHW qvalue SummarizedExperiment]; }; ITALICSData = derive2 { name="ITALICSData"; version="2.32.0"; sha256="13psfxkv4wxlk1fhlvilpw5l4k84xc0f97j0hisdmlm9y57km62v"; depends=[]; }; Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.30.0"; sha256="1g2jrqz32vlvxn5v1p9pzl99b2qjrq9cxv61zl4rip1k3q9zw7mf"; depends=[]; }; IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.32.0"; sha256="19jk28hflhycp2mnic594bymqyv2bdwl88rmpmv6ggdc6z6prcll"; depends=[]; }; @@ -106,7 +106,7 @@ in with self; { KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.32.0"; sha256="03zakm4hnzm5bpj1is6idpljqg1sfzldv6i6z9rkg36dahcjkgli"; depends=[Biobase BiocGenerics]; }; KOdata = derive2 { name="KOdata"; version="1.20.0"; sha256="11ar6bp6j615hcqa8w0dha1d57r8kxwjr0aikmxl3j058yrv2p6m"; depends=[]; }; LRcellTypeMarkers = derive2 { name="LRcellTypeMarkers"; version="1.2.0"; sha256="0c7nwyskm5kx2z56vr8wb1c8ll8z3z7ywi52s4d1nmhmj9dyzmb3"; depends=[ExperimentHub]; }; - LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.32.0"; sha256="1kgydp7x3kdhh5kzwrh9fjc9zfw1jx4bbkgxc46vh1dwz8kbkbch"; depends=[IRanges KernSmooth]; }; + LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.32.0"; sha256="1kgydp7x3kdhh5kzwrh9fjc9zfw1jx4bbkgxc46vh1dwz8kbkbch"; depends=[IRanges]; }; ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.26.0"; sha256="0ag820shlpknc2zbqiwafisbg4hr7paqv3g26ghrvyvbkmqmj1w8"; depends=[methylPipe]; }; LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.30.0"; sha256="0sfadyna4njvz1dn0z3vhvyykl864534qr200swj4cmsny52bsdh"; depends=[]; }; LungCancerLines = derive2 { name="LungCancerLines"; version="0.32.0"; sha256="1clsdv7ryk46i7640sj77xnwqqw32aa9gy9g8hvhg4sliiqmgvjw"; depends=[Rsamtools]; }; @@ -122,8 +122,8 @@ in with self; { MOFAdata = derive2 { name="MOFAdata"; version="1.10.0"; sha256="1w0bq94ivm070bna64k6z3jv8y4k5wdqffy47kgdn3ncrhcmwn6q"; depends=[]; }; MSMB = derive2 { name="MSMB"; version="1.12.0"; sha256="08d4him513am05hsrd3i430cwjqw3qpv35b84kdf87cyfvz0wl1n"; depends=[]; }; MUGAExampleData = derive2 { name="MUGAExampleData"; version="1.14.0"; sha256="04ca666vaa2kshj98s8kx651pa3lmv1v6m2s22qxv34cj1ky54jl"; depends=[]; }; - MetaGxBreast = derive2 { name="MetaGxBreast"; version="1.14.0"; sha256="08cva4f3cb2mygf7i4b44xnsck75sbxfc05lxih478zcgm6n5v1w"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; - MetaGxOvarian = derive2 { name="MetaGxOvarian"; version="1.14.0"; sha256="1dvzmass9yg53gq26lpv6ic966agbf3y8ci7iq2q3b1ljs3x84af"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; + MetaGxBreast = derive2 { name="MetaGxBreast"; version="1.14.0"; sha256="08cva4f3cb2mygf7i4b44xnsck75sbxfc05lxih478zcgm6n5v1w"; depends=[AnnotationHub Biobase ExperimentHub impute SummarizedExperiment]; }; + MetaGxOvarian = derive2 { name="MetaGxOvarian"; version="1.14.0"; sha256="1dvzmass9yg53gq26lpv6ic966agbf3y8ci7iq2q3b1ljs3x84af"; depends=[AnnotationHub Biobase ExperimentHub impute SummarizedExperiment]; }; MetaGxPancreas = derive2 { name="MetaGxPancreas"; version="1.14.0"; sha256="140ypxhn0ibgisa0rwdpn5pcl9zgi10n4fpbr9v2vmllsfvc74rc"; depends=[AnnotationHub ExperimentHub impute S4Vectors SummarizedExperiment]; }; MethylAidData = derive2 { name="MethylAidData"; version="1.26.0"; sha256="1hdl459vfqaz545nc1yqssxn235rf26isvg9g8zzxm4hbr4jwh5y"; depends=[MethylAid]; }; MethylSeqData = derive2 { name="MethylSeqData"; version="1.4.0"; sha256="1n347m96hx5mnfwxv82iaxpl5kqamvqgxpw2s7q7b2wywcis3fdq"; depends=[ExperimentHub GenomeInfoDb GenomicRanges HDF5Array IRanges rhdf5 S4Vectors SummarizedExperiment]; }; @@ -132,12 +132,12 @@ in with self; { NCIgraphData = derive2 { name="NCIgraphData"; version="1.30.0"; sha256="12csh0jy8kx7xv14vqsimc3f3vl6ka5j04siq9mwrl026x0jyk95"; depends=[]; }; NGScopyData = derive2 { name="NGScopyData"; version="1.14.0"; sha256="1plgsrfq8s56f40x0sb9pk2c1pmq4r3qiyjlc8d78a0sd4vn4gxa"; depends=[]; }; NanoporeRNASeq = derive2 { name="NanoporeRNASeq"; version="1.4.0"; sha256="07vc2xw3d3wjbqm17zpz7sp3jmignk5riwrfqbrpwp3bg77xffg6"; depends=[ExperimentHub]; }; - NestLink = derive2 { name="NestLink"; version="1.10.0"; sha256="014knbyz67sq93gvp3ra5ajsarkb51f0v2rbjbq5qr2zr3xafyj5"; depends=[AnnotationHub Biostrings ExperimentHub gplots protViz ShortRead]; }; + NestLink = derive2 { name="NestLink"; version="1.10.0"; sha256="014knbyz67sq93gvp3ra5ajsarkb51f0v2rbjbq5qr2zr3xafyj5"; depends=[AnnotationHub Biostrings ExperimentHub ShortRead]; }; Neve2006 = derive2 { name="Neve2006"; version="0.32.0"; sha256="0hhpcfwpmi3j57w26f4916lv7sj7nrjiffbmfysl5sqsjw0djn89"; depends=[annotate Biobase hgu133a_db]; }; - NxtIRFdata = derive2 { name="NxtIRFdata"; version="1.0.0"; sha256="10y40srz5rq465mhqag2kqz9kpr7qymd41lyyhbc5fvglc8l37js"; depends=[BiocFileCache ExperimentHub R_utils rtracklayer]; }; + NxtIRFdata = derive2 { name="NxtIRFdata"; version="1.0.0"; sha256="10y40srz5rq465mhqag2kqz9kpr7qymd41lyyhbc5fvglc8l37js"; depends=[BiocFileCache ExperimentHub rtracklayer]; }; OMICsPCAdata = derive2 { name="OMICsPCAdata"; version="1.12.0"; sha256="1l4rmfdcfafh8pyvz8bsl4rm3859c8ckzw9kv2dc82djgk0b2lcq"; depends=[MultiAssayExperiment]; }; ObMiTi = derive2 { name="ObMiTi"; version="1.2.0"; sha256="131n0q34xizcw21sjrxcf185qfpxfc8m4xypmp812151f886p405"; depends=[ExperimentHub SummarizedExperiment]; }; - OnassisJavaLibs = derive2 { name="OnassisJavaLibs"; version="1.16.0"; sha256="0hw0djfc8bfk51np4x7ik8nr2dscn5wd7gvbr0564yfz2ilf8l6v"; depends=[rJava]; }; + OnassisJavaLibs = derive2 { name="OnassisJavaLibs"; version="1.16.0"; sha256="0hw0djfc8bfk51np4x7ik8nr2dscn5wd7gvbr0564yfz2ilf8l6v"; depends=[]; }; PCHiCdata = derive2 { name="PCHiCdata"; version="1.22.0"; sha256="0hk7fwh456xmlfgdgp6wsdn38v1g8b18f28f0wswgxxg1hy4mhih"; depends=[Chicago]; }; PREDAsampledata = derive2 { name="PREDAsampledata"; version="0.34.0"; sha256="1gkjsh0xyn27jrxldkcgyvwpa2b2l81k96j2cls3y4dm9r39g637"; depends=[affy annotate Biobase PREDA]; }; PWMEnrich_Dmelanogaster_background = derive2 { name="PWMEnrich.Dmelanogaster.background"; version="4.28.0"; sha256="0fagxhzqr2ri1w93yr7ch1x9d55q8305cfj62gcxkzpi61j8nx1y"; depends=[PWMEnrich]; }; @@ -157,7 +157,7 @@ in with self; { RLHub = derive2 { name="RLHub"; version="1.0.0"; sha256="1i3i1dp5b04xmkgz6lf3fdk0bag23as4f42pcqncalxavgf3c3vm"; depends=[AnnotationHub ExperimentHub]; }; RMassBankData = derive2 { name="RMassBankData"; version="1.32.0"; sha256="1m268dd3wl92l3vihqijcxy1iif7qw3i3vlqhjq18qmc11i55qp2"; depends=[]; }; RNASeqRData = derive2 { name="RNASeqRData"; version="1.12.0"; sha256="0546d7p29vra6n54ffnjxz0ajb9ih90m01xx3b9p56v2s4x0wia4"; depends=[]; }; - RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.32.0"; sha256="0gcvhqpb0h0d0p2rr4vnh24a2flc4m502gyqb0gikk1sfd4jf6jz"; depends=[Biobase fields gdata genefilter lattice MASS RNAinteract sparseLDA]; }; + RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.32.0"; sha256="0gcvhqpb0h0d0p2rr4vnh24a2flc4m502gyqb0gikk1sfd4jf6jz"; depends=[Biobase genefilter RNAinteract]; }; RNAmodR_Data = derive2 { name="RNAmodR.Data"; version="1.8.0"; sha256="1zinj1m27khxmm6qwdl6zmydw505df2lsdfh4hfrnrp0yhwhp0g0"; depends=[ExperimentHub ExperimentHubData]; }; RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.32.0"; sha256="1bgz3i5x0f3940dk4nynxd4r5ji79rs81fwz9iq8br8srssdb4bg"; depends=[]; }; RRBSdata = derive2 { name="RRBSdata"; version="1.14.0"; sha256="19k7dlllf77ymn84zh22qiv1xhjv6k5i6ss9fa1w7slps17k8l1g"; depends=[BiSeq]; }; @@ -171,17 +171,17 @@ in with self; { RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="20151101.24.0"; sha256="0diaxx1484nq4avmsvqs7w0dcpy36kjllklr9wx4r9zmmw098yyg"; depends=[RTCGA]; }; RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="20151101.24.0"; sha256="09hr3fm8yrdyhzfrwxk59y2fdl2yg449v0na0i6im9as38zki9zb"; depends=[RTCGA]; }; RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="1.14.0"; sha256="1i5hd120jc6h23vxaf5pylnji1jig9ryml1hqrrldw7wnr6iqcl5"; depends=[Biobase]; }; - RcisTarget_hg19_motifDBs_cisbpOnly_500bp = derive2 { name="RcisTarget.hg19.motifDBs.cisbpOnly.500bp"; version="1.14.0"; sha256="06isc22wgwynrx9y55fkaqw6240866k400n8dfmn4pdrx3zwzhra"; depends=[data_table]; }; - ReactomeGSA_data = derive2 { name="ReactomeGSA.data"; version="1.8.0"; sha256="1gpy8hbib6zldi5pwmdiqfy1pg5b4i0s6hv8x41cbryvmgx718bx"; depends=[edgeR limma ReactomeGSA Seurat]; }; - RegParallel = derive2 { name="RegParallel"; version="1.12.0"; sha256="1px5j2i7gdsb2ccx556knx4dyr7wibvspgi28ja4qlsb9gn4xnin"; depends=[arm data_table doParallel foreach iterators stringr survival]; }; - RforProteomics = derive2 { name="RforProteomics"; version="1.31.1"; sha256="1lb990amjy4246v3dy75bby3xbr3as017bi0zbrqda168cm8h5af"; depends=[BiocManager biocViews MSnbase R_utils]; }; + RcisTarget_hg19_motifDBs_cisbpOnly_500bp = derive2 { name="RcisTarget.hg19.motifDBs.cisbpOnly.500bp"; version="1.14.0"; sha256="06isc22wgwynrx9y55fkaqw6240866k400n8dfmn4pdrx3zwzhra"; depends=[]; }; + ReactomeGSA_data = derive2 { name="ReactomeGSA.data"; version="1.8.0"; sha256="1gpy8hbib6zldi5pwmdiqfy1pg5b4i0s6hv8x41cbryvmgx718bx"; depends=[edgeR limma ReactomeGSA]; }; + RegParallel = derive2 { name="RegParallel"; version="1.12.0"; sha256="1px5j2i7gdsb2ccx556knx4dyr7wibvspgi28ja4qlsb9gn4xnin"; depends=[]; }; + RforProteomics = derive2 { name="RforProteomics"; version="1.31.1"; sha256="1lb990amjy4246v3dy75bby3xbr3as017bi0zbrqda168cm8h5af"; depends=[biocViews MSnbase]; }; RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.26.0"; sha256="1r9hac14p4a0696v7n4vvxfnmsp6snvwyh0gz6h2ch7cdnp2ny0d"; depends=[GenomicRanges]; }; RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.26.0"; sha256="0kcqa4zhb8i5104p1qyfdp4h50x60vns4dzr663vyhkcm7y8phhg"; depends=[GenomicRanges]; }; RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="2.2.0"; sha256="06g1ys8daxjjry0zbdhilip529zamj99ing1impxnnr2kv1s3as2"; depends=[GenomicRanges]; }; RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.26.0"; sha256="1m7fvapwqaqfz7sjvapb4s7glcnpf35cxdg4gwi4qpjz3qq6fn95"; depends=[GenomicRanges]; }; RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.26.0"; sha256="1maywqb83036rjw7c6y14vcmlk0kimh54wkjvv1chqkf61a41wyh"; depends=[GenomicRanges]; }; RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.26.0"; sha256="029qlllnvi63jkxj8fhqzp02sl5cay2n046a1ghnwrbjf8ax3qby"; depends=[edgeR]; }; - SBGNview_data = derive2 { name="SBGNview.data"; version="1.8.0"; sha256="1xcicqsyvvgb3bwxzw6pw0xvrhrvswjp5piqmkdqv1d747mci58b"; depends=[bookdown knitr rmarkdown]; }; + SBGNview_data = derive2 { name="SBGNview.data"; version="1.8.0"; sha256="1xcicqsyvvgb3bwxzw6pw0xvrhrvswjp5piqmkdqv1d747mci58b"; depends=[]; }; SCATEData = derive2 { name="SCATEData"; version="1.4.0"; sha256="1zaysac53dv4q2w93bdmmnva5p4h63bp752h3kgik91p77i8vg95"; depends=[ExperimentHub GenomicAlignments GenomicRanges]; }; SCLCBam = derive2 { name="SCLCBam"; version="1.26.0"; sha256="087ypaaqb4a44jk6fqnh8z4i45384zr6riv22z1kwcx3fpybc5zx"; depends=[]; }; SNAData = derive2 { name="SNAData"; version="1.40.0"; sha256="1ng54ccaarbsfqak4gvx680rfpskp90ravif0n0iminqmfm596sg"; depends=[graph]; }; @@ -191,13 +191,13 @@ in with self; { SVM2CRMdata = derive2 { name="SVM2CRMdata"; version="1.26.0"; sha256="0k6zznv9ai9ib011yq48zzpdk8qik5ms9388dcw4k90zirnmd4ii"; depends=[]; }; SimBenchData = derive2 { name="SimBenchData"; version="1.2.0"; sha256="01k5p00lrczk7xww7xkj880aj5x14sgwbvgl7gmqrzqw69x0d3ns"; depends=[ExperimentHub S4Vectors]; }; Single_mTEC_Transcriptomes = derive2 { name="Single.mTEC.Transcriptomes"; version="1.22.0"; sha256="0vgf7pl31vdmn5wbm7jhbbhv46bi3p1fb1cgzi2lnzg1m5y117wd"; depends=[]; }; - SingleCellMultiModal = derive2 { name="SingleCellMultiModal"; version="1.6.0"; sha256="1gbf52bs87ypszhj7a6v7ggbqznbfj77p0xy17aygnqlpg1rls43"; depends=[AnnotationHub BiocFileCache BiocGenerics ExperimentHub HDF5Array Matrix MultiAssayExperiment S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + SingleCellMultiModal = derive2 { name="SingleCellMultiModal"; version="1.6.0"; sha256="1gbf52bs87ypszhj7a6v7ggbqznbfj77p0xy17aygnqlpg1rls43"; depends=[AnnotationHub BiocFileCache BiocGenerics ExperimentHub HDF5Array MultiAssayExperiment S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; SingleMoleculeFootprintingData = derive2 { name="SingleMoleculeFootprintingData"; version="1.2.0"; sha256="1knajc7bjiylbkdz97vcs0m7m9m2yvzp6pilglkxnrrqjc9r2d86"; depends=[ExperimentHub]; }; SomatiCAData = derive2 { name="SomatiCAData"; version="1.32.0"; sha256="0x5ygnc4bgqqwap1919hw69hmy3d3r5svyssihrhqp9a3jp55yag"; depends=[]; }; SomaticCancerAlterations = derive2 { name="SomaticCancerAlterations"; version="1.30.0"; sha256="0wwphjr94kavb45xhsjfhqcyjisanl511in4kn3din1m291xsl3m"; depends=[GenomicRanges IRanges S4Vectors]; }; SpikeIn = derive2 { name="SpikeIn"; version="1.36.0"; sha256="1z04cqp2p445zdnhkblyy4lk0flmq1x1ir32sqn1kds1nkmv0ws8"; depends=[affy]; }; SpikeInSubset = derive2 { name="SpikeInSubset"; version="1.34.0"; sha256="0adzr1072rr2zbwmhzg6h3m00w4dxpz9c3f24hj6gf6w9gzk79a7"; depends=[affy Biobase]; }; - TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.30.0"; sha256="1y1dgnqa3f80x8j8pw02dd4zb40q86v1qp7102lkhnppvb3b3f2j"; depends=[Rsamtools xtable]; }; + TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.30.0"; sha256="1y1dgnqa3f80x8j8pw02dd4zb40q86v1qp7102lkhnppvb3b3f2j"; depends=[Rsamtools]; }; TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.30.0"; sha256="1qymmnvpic4nz93079r5kxb9yi7y6qcjq39rz5mmcp15q73lpfqk"; depends=[]; }; TCGAWorkflowData = derive2 { name="TCGAWorkflowData"; version="1.18.0"; sha256="17iq6g93bxzzgsv255ab68crcr5haim57fxx6shjy8ww2ab6522k"; depends=[SummarizedExperiment]; }; TCGAbiolinksGUI_data = derive2 { name="TCGAbiolinksGUI.data"; version="1.14.0"; sha256="08zmlvycq3jz1zy0715x9f21nf3465c51k7w2jq12sfbap36pmjm"; depends=[]; }; @@ -207,16 +207,16 @@ in with self; { TENxBrainData = derive2 { name="TENxBrainData"; version="1.14.0"; sha256="1fhhsrariacvd63ngvs348q6cvp4kmjfjzsl2k3a4r8ci3y4snzc"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; TENxPBMCData = derive2 { name="TENxPBMCData"; version="1.12.0"; sha256="0gb6ji84zk2shz4y10mcccvamz7840qm21nsw8pczq90g0x2vz1g"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; TENxVisiumData = derive2 { name="TENxVisiumData"; version="1.2.0"; sha256="175mnl0axzhvfp49g4hwplcr0p064yzh77wn30z8m738ckkwz5gr"; depends=[ExperimentHub SpatialExperiment]; }; - TMExplorer = derive2 { name="TMExplorer"; version="1.4.0"; sha256="0l5rs379mg5nwqbfv1kpgqbwjbym82g0wq3354fcvp6w91bskspz"; depends=[BiocFileCache Matrix SingleCellExperiment]; }; + TMExplorer = derive2 { name="TMExplorer"; version="1.4.0"; sha256="0l5rs379mg5nwqbfv1kpgqbwjbym82g0wq3354fcvp6w91bskspz"; depends=[BiocFileCache SingleCellExperiment]; }; TabulaMurisData = derive2 { name="TabulaMurisData"; version="1.12.0"; sha256="1ncv97h21w9qy7gqz25wsayq6y01siaxc5cll4c8r0nsh3hprnjc"; depends=[ExperimentHub]; }; - TabulaMurisSenisData = derive2 { name="TabulaMurisSenisData"; version="1.0.0"; sha256="1apwhg418s3vmqk28smj2ac54dzbayvn9bd8pn5gnqijcziy6j6h"; depends=[AnnotationHub ExperimentHub gdata HDF5Array SingleCellExperiment SummarizedExperiment]; }; + TabulaMurisSenisData = derive2 { name="TabulaMurisSenisData"; version="1.0.0"; sha256="1apwhg418s3vmqk28smj2ac54dzbayvn9bd8pn5gnqijcziy6j6h"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment SummarizedExperiment]; }; TargetScoreData = derive2 { name="TargetScoreData"; version="1.30.0"; sha256="11j7nc0k86qk3jgqhiarwawlzih86s8xdsiwllsnrp8i3ddwfq8x"; depends=[]; }; TargetSearchData = derive2 { name="TargetSearchData"; version="1.32.0"; sha256="11gs90jl3z95b2pp2v2lgfibk0hmkkp6waf9pnhw68kp38iv1n7w"; depends=[]; }; - TimerQuant = derive2 { name="TimerQuant"; version="1.24.0"; sha256="1phyxfdljbx6k7l2lmrzs764yx1y9w4hj415zzpqs3i8skf83pf2"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; }; + TimerQuant = derive2 { name="TimerQuant"; version="1.24.0"; sha256="1phyxfdljbx6k7l2lmrzs764yx1y9w4hj415zzpqs3i8skf83pf2"; depends=[]; }; VariantToolsData = derive2 { name="VariantToolsData"; version="1.18.0"; sha256="0xa3bwjf255ff65fphxn0mn39j1f6f5k8snpbwy0qrrcv6a5ksky"; depends=[BiocGenerics GenomicRanges VariantAnnotation]; }; WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.26.0"; sha256="0857mgrscvdi4r6bzijb411vjh9nprgi0vda3b14rh2kz5py8y5k"; depends=[]; }; WGSmapp = derive2 { name="WGSmapp"; version="1.6.0"; sha256="0vzpvhz4s68jdjpli6pl18y804wdcc1xb8d1lz0lywg2shf2vfhf"; depends=[GenomicRanges]; }; - XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.32.0"; sha256="1xj5sdqvp9zfgk5hk2zqr5jjfym6zv7h94j1kir11pbxy9h4j2i9"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; }; + XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.32.0"; sha256="1xj5sdqvp9zfgk5hk2zqr5jjfym6zv7h94j1kir11pbxy9h4j2i9"; depends=[affy ath1121501cdf tinesath1cdf]; }; adductData = derive2 { name="adductData"; version="1.10.0"; sha256="0bp74p06gskwn2xl1srpnmsq27ajsrlynkzw6fcmvwwjcrzljmnj"; depends=[AnnotationHub ExperimentHub]; }; affycompData = derive2 { name="affycompData"; version="1.32.0"; sha256="1f4c57clh0xzsj3vvx7bv0hdjgj7fj4zfzxbm0cavmp6khvgd6ng"; depends=[affycomp Biobase]; }; affydata = derive2 { name="affydata"; version="1.42.0"; sha256="184zrqgl0hnzqshjjpzqb41nry6c7sxqkj4lxn8217444pqq8i94"; depends=[affy]; }; @@ -229,7 +229,7 @@ in with self; { benchmarkfdrData2019 = derive2 { name="benchmarkfdrData2019"; version="1.8.0"; sha256="1434pf9jrgjpvx1rd50zi8010rzd3kdlj7ryvp1q6ivw9r90mq6j"; depends=[ExperimentHub SummarizedExperiment]; }; beta7 = derive2 { name="beta7"; version="1.32.0"; sha256="0m2mq9slb1yqjhk5y4sqclhm92j7q0a1rkh290j73ql2x90acb5y"; depends=[marray]; }; biotmleData = derive2 { name="biotmleData"; version="1.18.0"; sha256="1hsabj556jsiq3g466fqwq4lfy01bh3riv0c9jms43gd0l414ic8"; depends=[]; }; - biscuiteerData = derive2 { name="biscuiteerData"; version="1.8.0"; sha256="19j4g8fvfmfb3x6bpbx5cs3ad8pv263ga8p9rj266s5dla5yi8jz"; depends=[AnnotationHub curl ExperimentHub]; }; + biscuiteerData = derive2 { name="biscuiteerData"; version="1.8.0"; sha256="19j4g8fvfmfb3x6bpbx5cs3ad8pv263ga8p9rj266s5dla5yi8jz"; depends=[AnnotationHub ExperimentHub]; }; bladderbatch = derive2 { name="bladderbatch"; version="1.32.0"; sha256="1lrx5qx8kj0dzpcqm8091px8zj3snkbjlpwdckyhvf10iyw4mjxy"; depends=[Biobase]; }; blimaTestingData = derive2 { name="blimaTestingData"; version="1.14.0"; sha256="1dx475m12nb010c56h7iadb6g2b1xgvd6q0mqjkp3sqsfgv27cfn"; depends=[]; }; bodymapRat = derive2 { name="bodymapRat"; version="1.10.0"; sha256="1zn08w81pyyd19hrgylzpif7rw7n7qny1bccl566sqc80dqhavgb"; depends=[ExperimentHub SummarizedExperiment]; }; @@ -250,7 +250,7 @@ in with self; { ccdata = derive2 { name="ccdata"; version="1.20.0"; sha256="0s6n8dv91p3g44j7nhsfjyqzbga4akfsr574abdwmkwyz13b37qd"; depends=[]; }; celarefData = derive2 { name="celarefData"; version="1.12.0"; sha256="0vhkhb2i1n62shg608q8k6frraynmxghz1kp961v7fca4lww1i96"; depends=[]; }; celldex = derive2 { name="celldex"; version="1.4.0"; sha256="04w60fx3s3wlirmr65nsz6d7ig48j9fzimdr8kbdqv1g80ivdcq1"; depends=[AnnotationDbi AnnotationHub DelayedArray DelayedMatrixStats ExperimentHub S4Vectors SummarizedExperiment]; }; - chipenrich_data = derive2 { name="chipenrich.data"; version="2.18.0"; sha256="1x400szark90jzfnr1fp7z956vp0bbnhgc5njzmigqw213fb0647"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicRanges IRanges readr rtracklayer S4Vectors]; }; + chipenrich_data = derive2 { name="chipenrich.data"; version="2.18.0"; sha256="1x400szark90jzfnr1fp7z956vp0bbnhgc5njzmigqw213fb0647"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors]; }; chipseqDBData = derive2 { name="chipseqDBData"; version="1.10.0"; sha256="1lv02yn8v3l4h0775dqsbbadv6iv7ln7i58x042avlww2rf3lkp5"; depends=[AnnotationHub ExperimentHub Rsamtools S4Vectors]; }; chromstaRData = derive2 { name="chromstaRData"; version="1.20.0"; sha256="0bpbnsfs44pdwjsgf3vmkgsq0mz46rx13j1d6g69z4yv00m5kp7j"; depends=[]; }; clustifyrdatahub = derive2 { name="clustifyrdatahub"; version="1.4.0"; sha256="1wm0mlzs3k88zqjhz9wg846ngffgvs72s2ixmp3kwpdm4gk1jx3y"; depends=[ExperimentHub]; }; @@ -260,18 +260,18 @@ in with self; { curatedAdipoChIP = derive2 { name="curatedAdipoChIP"; version="1.10.0"; sha256="1mwjw585vn8malbanidvk30gwd5057358ak3669akikxf6wna9cj"; depends=[ExperimentHub SummarizedExperiment]; }; curatedAdipoRNA = derive2 { name="curatedAdipoRNA"; version="1.10.0"; sha256="0k3hhcfs484hxm0jixgs4q29jq9vk90s2zdz2m23inmn8cxv6d5b"; depends=[SummarizedExperiment]; }; curatedBladderData = derive2 { name="curatedBladderData"; version="1.30.0"; sha256="0jv7aflam2gfzj8snf7dly26zq9c6gj764zb6fk0z9lb8wk4arxg"; depends=[affy]; }; - curatedBreastData = derive2 { name="curatedBreastData"; version="2.22.0"; sha256="0jnjhlw3b27521jmbbq4m0lq388m1g09lfhqfri3hbvrayk19pn6"; depends=[Biobase BiocStyle ggplot2 impute XML]; }; - curatedCRCData = derive2 { name="curatedCRCData"; version="2.26.0"; sha256="0gpkfff5k4mh96d6q5s2iwba7pfkp5wjl3nxhg3sm0vryrj0w8s0"; depends=[BiocGenerics nlme]; }; - curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="3.2.0"; sha256="1k4fjpmgs7dfvf7bkzyb9lmzmw7jj8ayc2y3nbskap6l1xl5qpxb"; depends=[AnnotationHub dplyr ExperimentHub magrittr mia purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect TreeSummarizedExperiment]; }; + curatedBreastData = derive2 { name="curatedBreastData"; version="2.22.0"; sha256="0jnjhlw3b27521jmbbq4m0lq388m1g09lfhqfri3hbvrayk19pn6"; depends=[Biobase BiocStyle impute]; }; + curatedCRCData = derive2 { name="curatedCRCData"; version="2.26.0"; sha256="0gpkfff5k4mh96d6q5s2iwba7pfkp5wjl3nxhg3sm0vryrj0w8s0"; depends=[BiocGenerics]; }; + curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="3.2.0"; sha256="1k4fjpmgs7dfvf7bkzyb9lmzmw7jj8ayc2y3nbskap6l1xl5qpxb"; depends=[AnnotationHub ExperimentHub mia S4Vectors SummarizedExperiment TreeSummarizedExperiment]; }; curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.32.0"; sha256="171m6j6wq5w7n68xzjf34shqhw1360cmzfh5q2al71jsh8lrw77x"; depends=[affy BiocGenerics]; }; - curatedTBData = derive2 { name="curatedTBData"; version="1.0.0"; sha256="0cbs8pkr4zlpvdmq1zsxyh47lkbgpf0ppbv8y653arryb4knficl"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment rlang]; }; + curatedTBData = derive2 { name="curatedTBData"; version="1.0.0"; sha256="0cbs8pkr4zlpvdmq1zsxyh47lkbgpf0ppbv8y653arryb4knficl"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment]; }; curatedTCGAData = derive2 { name="curatedTCGAData"; version="1.16.0"; sha256="0d7id11liv55xj0n8gk0587p6kjwm5k22jgwf1f107y81zigpi3n"; depends=[AnnotationHub ExperimentHub HDF5Array MultiAssayExperiment S4Vectors SummarizedExperiment]; }; davidTiling = derive2 { name="davidTiling"; version="1.34.0"; sha256="1az64q1vcgp2rwlpv79bhz3xjjki07n5x6jc12i5ladxlxb1zrwy"; depends=[Biobase GO_db tilingArray]; }; - depmap = derive2 { name="depmap"; version="1.8.0"; sha256="17zwkbndf1fa8sb5lc500l4s7f8x0zq6si8yb8i28bpk5hvdz737"; depends=[AnnotationHub dplyr ExperimentHub]; }; + depmap = derive2 { name="depmap"; version="1.8.0"; sha256="17zwkbndf1fa8sb5lc500l4s7f8x0zq6si8yb8i28bpk5hvdz737"; depends=[AnnotationHub ExperimentHub]; }; derfinderData = derive2 { name="derfinderData"; version="2.12.0"; sha256="1i8k7yjkkqv7j2qxh46377acgw2zlf7az4fh0v4gl80c1iplzq2j"; depends=[]; }; diffloopdata = derive2 { name="diffloopdata"; version="1.22.0"; sha256="1nhyjbbdspw11kms4hh4bmwa9m91zl1lwxjp20q6nqdb7vr57ra5"; depends=[]; }; diggitdata = derive2 { name="diggitdata"; version="1.26.0"; sha256="04q8n0fap7hasfxnhc0gc4118jsch01j2j614j6dx19frc1g96v4"; depends=[Biobase viper]; }; - dorothea = derive2 { name="dorothea"; version="1.6.0"; sha256="1a5nyxbjrd61mbbrpms8whh4v3qjch21xqf98ahaj5ikpsr1fs7i"; depends=[bcellViper dplyr magrittr viper]; }; + dorothea = derive2 { name="dorothea"; version="1.6.0"; sha256="1a5nyxbjrd61mbbrpms8whh4v3qjch21xqf98ahaj5ikpsr1fs7i"; depends=[bcellViper viper]; }; dressCheck = derive2 { name="dressCheck"; version="0.32.0"; sha256="12s2cd770n229wxa3gnpyxw299xk8s774wfi9mx0h4r65cvj900d"; depends=[Biobase]; }; dyebiasexamples = derive2 { name="dyebiasexamples"; version="1.34.0"; sha256="0cp1l68y79qppnzzs11n57f0hasbyla5prc9nr52iqng4fb0y8ww"; depends=[GEOquery marray]; }; easierData = derive2 { name="easierData"; version="1.0.0"; sha256="05hcnfh3nhkg14fpgzk254472xhxahni4kfmf7xj4pa13yzkvjnl"; depends=[AnnotationHub ExperimentHub SummarizedExperiment]; }; @@ -288,7 +288,7 @@ in with self; { flowPloidyData = derive2 { name="flowPloidyData"; version="1.20.0"; sha256="0jqmaazhn23cqbfz5f55aj1acr3z1vw2a6bhfk85n6npcqvbj1s9"; depends=[]; }; flowWorkspaceData = derive2 { name="flowWorkspaceData"; version="3.6.0"; sha256="0jawkzfrq489mrf535biqrlp1xmg1aawbx71n05kxh06i5nyw3zq"; depends=[]; }; frmaExampleData = derive2 { name="frmaExampleData"; version="1.30.0"; sha256="1dyh4qbw5l99052c7xhrjpn8xzzzqx870gxw1f3xnz7kmvymsqgb"; depends=[]; }; - furrowSeg = derive2 { name="furrowSeg"; version="1.22.0"; sha256="05nn6jlj3z30qz06rdrac1v558176kpgxhaqijmg3amwzinkjlg7"; depends=[abind dplyr EBImage locfit tiff]; }; + furrowSeg = derive2 { name="furrowSeg"; version="1.22.0"; sha256="05nn6jlj3z30qz06rdrac1v558176kpgxhaqijmg3amwzinkjlg7"; depends=[EBImage]; }; gageData = derive2 { name="gageData"; version="2.32.0"; sha256="18kj4c5p9gw0kvx9r71hfb2hn1xyxjny0j3z5shcy762xs17jxb7"; depends=[]; }; gaschYHS = derive2 { name="gaschYHS"; version="1.32.0"; sha256="0x1vn8mk04j5aslhaxnfa17iqhz68m4yxjs9a5vmbry10lzz1r97"; depends=[Biobase]; }; gatingMLData = derive2 { name="gatingMLData"; version="2.34.0"; sha256="1qmmaqqa61gmw98ph3mz7pmhbah775bndy436i1vnbyv54r2qi8k"; depends=[]; }; @@ -330,7 +330,7 @@ in with self; { miRNATarget = derive2 { name="miRNATarget"; version="1.32.0"; sha256="067bcdyhqrrym2sz854dw2qpmabfp1yf2iryhpkbfk9b8966b9yv"; depends=[Biobase]; }; miRcompData = derive2 { name="miRcompData"; version="1.24.0"; sha256="1gb8zx82dlfqhdl8yy1p0l756qs2lldnlm05xk6r4k46wz937jw9"; depends=[]; }; microRNAome = derive2 { name="microRNAome"; version="1.16.0"; sha256="1y6g5i8x2ylxrr6k80kg92a04isfr7c3w7zi01chf1fpsdxjimjn"; depends=[SummarizedExperiment]; }; - microbiomeDataSets = derive2 { name="microbiomeDataSets"; version="1.2.0"; sha256="0pi15jk2k2nzcylh45mklz7id556ljqhx1fdcc04hrgw7n96c1ks"; depends=[ape BiocGenerics Biostrings ExperimentHub MultiAssayExperiment SummarizedExperiment TreeSummarizedExperiment]; }; + microbiomeDataSets = derive2 { name="microbiomeDataSets"; version="1.2.0"; sha256="0pi15jk2k2nzcylh45mklz7id556ljqhx1fdcc04hrgw7n96c1ks"; depends=[BiocGenerics Biostrings ExperimentHub MultiAssayExperiment SummarizedExperiment TreeSummarizedExperiment]; }; minfiData = derive2 { name="minfiData"; version="0.40.0"; sha256="12lnn43l6mdk4rbcihd68hsz0rqgi005zwih5wqx1jp400g2kd07"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; }; minfiDataEPIC = derive2 { name="minfiDataEPIC"; version="1.20.0"; sha256="0jc1mqw2ah95ai10xl8m62gs38c88qzrsx4lkcg1w03dqxky08qj"; depends=[IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest minfi]; }; minionSummaryData = derive2 { name="minionSummaryData"; version="1.24.0"; sha256="1ldwmxhs7sg6k30prsa88hkxwmb3sf8ik2zv83j020cqxjlwr6xv"; depends=[]; }; @@ -340,7 +340,7 @@ in with self; { msd16s = derive2 { name="msd16s"; version="1.14.0"; sha256="02mn8pjxqfy9rjc6rdac3in2iqmy7x6lkb8cag3zhmx6z98b8lxv"; depends=[Biobase metagenomeSeq]; }; msdata = derive2 { name="msdata"; version="0.34.0"; sha256="066ss2cvqmisxw1sslz04a0izq2vmpgvlg00v8wynv7pmq1783w2"; depends=[]; }; msigdb = derive2 { name="msigdb"; version="1.2.0"; sha256="1i9c4h52z64kma1ms7qcvp3w6xrn2cmcrm389837znscghcm60mx"; depends=[AnnotationDbi AnnotationHub ExperimentHub GSEABase org_Hs_eg_db org_Mm_eg_db]; }; - msqc1 = derive2 { name="msqc1"; version="1.22.0"; sha256="0r0aj6x67ys5bxxfwc8cybkqnfl226ypgz5zhs6d701y8py7c3mv"; depends=[lattice]; }; + msqc1 = derive2 { name="msqc1"; version="1.22.0"; sha256="0r0aj6x67ys5bxxfwc8cybkqnfl226ypgz5zhs6d701y8py7c3mv"; depends=[]; }; mtbls2 = derive2 { name="mtbls2"; version="1.24.0"; sha256="1kbpnxizzz42inj6g1s4xgq2wmk53zkvpvgdkwvljxzavr8znjl6"; depends=[]; }; muscData = derive2 { name="muscData"; version="1.8.0"; sha256="1m263nykpxzl6xqvx8s7iadmfn4ammfvh2h0cdrk01vw4m4llywd"; depends=[ExperimentHub SingleCellExperiment]; }; mvoutData = derive2 { name="mvoutData"; version="1.30.0"; sha256="059y5iqbgav4b0sxdqjq6a0nx4c9wnxny1amz5bda4s3ragvn7vh"; depends=[affy Biobase lumi]; }; @@ -353,7 +353,7 @@ in with self; { pasilla = derive2 { name="pasilla"; version="1.22.0"; sha256="0jgphpwm5z1rzhcqbpzrhyfynjg5p8lb46m2l9ffmxbwi899i0qh"; depends=[]; }; pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.32.0"; sha256="1zxbcf83hsfzkps5ms46nj3g5ym532zncwlfna95kmw12xc9a90w"; depends=[]; }; pcxnData = derive2 { name="pcxnData"; version="2.16.0"; sha256="05nnpjnci3q2g1rmmmv8vjyzjylx4pzi42p71b95ff2apifbhk95"; depends=[]; }; - pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.32.0"; sha256="0bg7r5101xayyqbb1m4xcnq5iz63h3jl7v8v2s2ma07yaxix9w7x"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.32.0"; sha256="0bg7r5101xayyqbb1m4xcnq5iz63h3jl7v8v2s2ma07yaxix9w7x"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; pepDat = derive2 { name="pepDat"; version="1.14.0"; sha256="1l6cp2w22pywvdkzra8ifwxf4s5v47hpf5ljp97k34wpsrh7cws4"; depends=[GenomicRanges]; }; plasFIA = derive2 { name="plasFIA"; version="1.22.0"; sha256="118fch06a609gp799dsym3k14zspxdxzd9ck5jjpf8b3pf17ly9y"; depends=[proFIA]; }; plotgardenerData = derive2 { name="plotgardenerData"; version="1.0.0"; sha256="0fad3v1gh0g595zk1vabns8jfhb9h1qnlqynrjq50hrgg1vdljgw"; depends=[]; }; @@ -365,16 +365,16 @@ in with self; { prostateCancerStockholm = derive2 { name="prostateCancerStockholm"; version="1.22.0"; sha256="0jr248zkbsqp8sidnf3yl8f53aqrp5di574ymgmqxmqdxc72pd67"; depends=[Biobase]; }; prostateCancerTaylor = derive2 { name="prostateCancerTaylor"; version="1.22.0"; sha256="0s1jk2wj514rn43l13rw8k3y3phsiif3dw5pn84cqs47zwkb7q7q"; depends=[Biobase]; }; prostateCancerVarambally = derive2 { name="prostateCancerVarambally"; version="1.22.0"; sha256="1jj3qa795q75s46brq67hr8vkpzdxgc05wi3i564y4k8d08gl0xl"; depends=[Biobase]; }; - ptairData = derive2 { name="ptairData"; version="1.2.0"; sha256="13dqn720svg74q7fn6wvplcsdjpjlr8dj83ncqlsvddmyscyyclk"; depends=[rhdf5 signal]; }; + ptairData = derive2 { name="ptairData"; version="1.2.0"; sha256="13dqn720svg74q7fn6wvplcsdjpjlr8dj83ncqlsvddmyscyyclk"; depends=[rhdf5]; }; pumadata = derive2 { name="pumadata"; version="2.30.0"; sha256="184xrjjm4smgrfj18w63qq1p7f0dmn2qvf3y3mym1s6r2z00r73s"; depends=[Biobase oligo puma]; }; pwrEWAS_data = derive2 { name="pwrEWAS.data"; version="1.8.0"; sha256="15zkxp1wpnxi0g15x9ym1syfg3q5scvmpxq3zj5cs37z60y9gb7d"; depends=[ExperimentHub]; }; - qPLEXdata = derive2 { name="qPLEXdata"; version="1.12.0"; sha256="0dw6dicy7srlx5nxla76k338ki4aan54h3rnrqmyd7h3pp5svx09"; depends=[dplyr knitr MSnbase qPLEXanalyzer]; }; + qPLEXdata = derive2 { name="qPLEXdata"; version="1.12.0"; sha256="0dw6dicy7srlx5nxla76k338ki4aan54h3rnrqmyd7h3pp5svx09"; depends=[MSnbase qPLEXanalyzer]; }; rRDPData = derive2 { name="rRDPData"; version="1.14.0"; sha256="096wasx4xap4jvcziqr175qq84kz0yzy6v2ji618r6cflnlfrd8p"; depends=[rRDP]; }; rcellminerData = derive2 { name="rcellminerData"; version="2.16.0"; sha256="1yany4zkk72kxrqzy27azxfnl6mkrf02yby1gizixn04mqzbjl1a"; depends=[Biobase]; }; restfulSEData = derive2 { name="restfulSEData"; version="1.16.0"; sha256="1bx41xwxnvx6712wsy5qljji2w3wiybvddkxic8xc9l2hrcmfhrz"; depends=[ExperimentHub SummarizedExperiment]; }; rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.32.0"; sha256="0k2klx4rpyzcq346c3ak2lf6w47zkhnhiqn4rs70xnxnsbjn2ca5"; depends=[]; }; sampleClassifierData = derive2 { name="sampleClassifierData"; version="1.18.0"; sha256="12k7xhd2axmcpmv970xbhx5r9b0jdmkxxqm01a0v2jfx3imzz9jb"; depends=[SummarizedExperiment]; }; - scATAC_Explorer = derive2 { name="scATAC.Explorer"; version="1.0.0"; sha256="16qscpjbbphrd1qfp85r9bw8v98866kzsf20fk270m2aq378y4i8"; depends=[BiocFileCache data_table Matrix S4Vectors SingleCellExperiment]; }; + scATAC_Explorer = derive2 { name="scATAC.Explorer"; version="1.0.0"; sha256="16qscpjbbphrd1qfp85r9bw8v98866kzsf20fk270m2aq378y4i8"; depends=[BiocFileCache S4Vectors SingleCellExperiment]; }; scRNAseq = derive2 { name="scRNAseq"; version="2.8.0"; sha256="19caas79yarf3vww60bnn92v9ns82pawqbbw78kmy0x94hvsfdbk"; depends=[AnnotationDbi AnnotationHub BiocGenerics ensembldb ExperimentHub GenomicFeatures GenomicRanges S4Vectors SingleCellExperiment SummarizedExperiment]; }; scTHI_data = derive2 { name="scTHI.data"; version="1.6.0"; sha256="0n794kicpylibqgi4z9mwdgmk5ni3yhqzaqcdr2mij844s079fx4"; depends=[]; }; scanMiRData = derive2 { name="scanMiRData"; version="1.0.0"; sha256="0z6nl4w4r8m1mara0zyzlg7xx6y9fa8psvln0695wvpxzmps4y9h"; depends=[scanMiR]; }; @@ -383,27 +383,27 @@ in with self; { seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.30.0"; sha256="04m6azyswyglh2lvikk6xhnn2449p6vj2zhny1lpcg7j4x8msdvm"; depends=[]; }; seqc = derive2 { name="seqc"; version="1.28.0"; sha256="1iz35c3k8cr1080yi6cmjr42hwigfwjz5ydn36n6yy41n1s988za"; depends=[Biobase]; }; serumStimulation = derive2 { name="serumStimulation"; version="1.30.0"; sha256="1zn0q5zxdzfkkgv8n3q5nyxsj6yrv3chhyivggzxrjk942anl4rg"; depends=[]; }; - sesameData = derive2 { name="sesameData"; version="1.12.0"; sha256="1kr5vn4rw1ncnvbxx3j2amqqzsddzwy79qlpzqxp8jmzydqfamxj"; depends=[AnnotationHub curl ExperimentHub rmarkdown]; }; + sesameData = derive2 { name="sesameData"; version="1.12.0"; sha256="1kr5vn4rw1ncnvbxx3j2amqqzsddzwy79qlpzqxp8jmzydqfamxj"; depends=[AnnotationHub ExperimentHub]; }; seventyGeneData = derive2 { name="seventyGeneData"; version="1.30.0"; sha256="0ckip0hw3xwf48iqschdwrlx4yr5wnyf7iycxfbrc2cz7zsbgp5n"; depends=[]; }; shinyMethylData = derive2 { name="shinyMethylData"; version="1.14.0"; sha256="0hb1ahn1c613iz6ds39jgpa6aw0wgl0pv5f9gai1fp1zbqc44r6p"; depends=[]; }; - signatureSearchData = derive2 { name="signatureSearchData"; version="1.8.0"; sha256="13xfdg3si14zmrbib691301hhxxj3d3xyfkab5l4skspzgpd64cx"; depends=[affy Biobase dplyr ExperimentHub limma magrittr R_utils rhdf5 signatureSearch]; }; + signatureSearchData = derive2 { name="signatureSearchData"; version="1.8.0"; sha256="13xfdg3si14zmrbib691301hhxxj3d3xyfkab5l4skspzgpd64cx"; depends=[affy Biobase ExperimentHub limma rhdf5 signatureSearch]; }; simpIntLists = derive2 { name="simpIntLists"; version="1.30.0"; sha256="0q2lqfhsjncdj42hblrh389j2m47x26nn58s31s1448pddhrp7z1"; depends=[]; }; spatialDmelxsim = derive2 { name="spatialDmelxsim"; version="1.0.0"; sha256="1h5crcjrzapj5j31285ana48g3b2iscxwlzxxdx9i03jsl39dlp8"; depends=[ExperimentHub SummarizedExperiment]; }; - spatialLIBD = derive2 { name="spatialLIBD"; version="1.6.0"; sha256="0c1ayv3mf31smmqfys85xjpadkavjixw545gkalibvxrkxmq0qb3"; depends=[AnnotationHub benchmarkme BiocFileCache cowplot DT ExperimentHub fields ggplot2 golem IRanges jsonlite plotly png Polychrome RColorBrewer S4Vectors scater sessioninfo shiny shinyWidgets SingleCellExperiment SpatialExperiment SummarizedExperiment tibble viridisLite]; }; + spatialLIBD = derive2 { name="spatialLIBD"; version="1.6.0"; sha256="0c1ayv3mf31smmqfys85xjpadkavjixw545gkalibvxrkxmq0qb3"; depends=[AnnotationHub BiocFileCache ExperimentHub IRanges S4Vectors scater SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; spqnData = derive2 { name="spqnData"; version="1.6.0"; sha256="0dwmgwz88g8fzpa2nl2zs4y32wrlf4ca142d8siak14wl089nm4y"; depends=[SummarizedExperiment]; }; stemHypoxia = derive2 { name="stemHypoxia"; version="1.30.0"; sha256="05jly60gg5xr9511jlymzbpjysapfz2qq81rxhdz7cjbjkkgvykr"; depends=[]; }; stjudem = derive2 { name="stjudem"; version="1.34.0"; sha256="005wy7b8naaph9krsdw234sk8fprccclnj7y4rfrs2f3lbrw4b2g"; depends=[]; }; synapterdata = derive2 { name="synapterdata"; version="1.31.0"; sha256="03bdx8a1hrnlbcfq92d2yrjydw978pifbgr257r55p15khkigl86"; depends=[]; }; - systemPipeRdata = derive2 { name="systemPipeRdata"; version="1.22.0"; sha256="09p653i4drnfjvx3kd20f4jg7lw1254f44qknl3ghiqppa6rz9g9"; depends=[BiocGenerics GenomicFeatures GenomicRanges IRanges jsonlite remotes Rsamtools rtracklayer ShortRead]; }; + systemPipeRdata = derive2 { name="systemPipeRdata"; version="1.22.0"; sha256="09p653i4drnfjvx3kd20f4jg7lw1254f44qknl3ghiqppa6rz9g9"; depends=[BiocGenerics GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer ShortRead]; }; tartare = derive2 { name="tartare"; version="1.8.0"; sha256="0zaiy4wkikrcx2lc8mcsikpfp8yz3l17bd1z1l0g9r41ixysq105"; depends=[AnnotationHub ExperimentHub]; }; - tcgaWGBSData_hg19 = derive2 { name="tcgaWGBSData.hg19"; version="1.12.0"; sha256="1kmh4iyh2h7vc1mlwb3sridn4nwkqdschz5md5dk53mxkn2wxcmi"; depends=[bsseq ExperimentHub knitr]; }; + tcgaWGBSData_hg19 = derive2 { name="tcgaWGBSData.hg19"; version="1.12.0"; sha256="1kmh4iyh2h7vc1mlwb3sridn4nwkqdschz5md5dk53mxkn2wxcmi"; depends=[bsseq ExperimentHub]; }; timecoursedata = derive2 { name="timecoursedata"; version="1.4.0"; sha256="007dh5wmjd6s7jr0p8af6irm25my20j1ifxhm6rxscgijskqb410"; depends=[SummarizedExperiment]; }; tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.32.0"; sha256="1pa1mzb03p8wfrihcpvqhp2zpzhf0hg5amwmivr4926x26ivkbsj"; depends=[]; }; tinesath1probe = derive2 { name="tinesath1probe"; version="1.32.0"; sha256="00bhw370f4i866w08fia3acp7whxz7p167y444jaavll29bhqgsy"; depends=[AnnotationDbi]; }; tissueTreg = derive2 { name="tissueTreg"; version="1.14.0"; sha256="0ldgq526izrvazrsbwhnvq6yqc2zr6d9mvq87jvsmwskxswyrpva"; depends=[]; }; tofsimsData = derive2 { name="tofsimsData"; version="1.22.0"; sha256="1iqp70zr2i3p0pvzblsqqy7v949n5ankxp133zyhm88wscqxjwiv"; depends=[]; }; topdownrdata = derive2 { name="topdownrdata"; version="1.16.0"; sha256="1s4yskh6jy49dipbb7ixrb4dbl5d8a33d1kb5j99vgimj8rq9gsy"; depends=[topdownr]; }; - tuberculosis = derive2 { name="tuberculosis"; version="1.0.0"; sha256="1bnimnik486r6g6mx0frigg5iwm3x4zbwsrsfq59s05mzix7silm"; depends=[AnnotationHub dplyr ExperimentHub magrittr purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; + tuberculosis = derive2 { name="tuberculosis"; version="1.0.0"; sha256="1bnimnik486r6g6mx0frigg5iwm3x4zbwsrsfq59s05mzix7silm"; depends=[AnnotationHub ExperimentHub S4Vectors SummarizedExperiment]; }; tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.32.0"; sha256="1zi2ic6yhwh3swp473xy540wg74g98bs4s820yzga9aqbcp7g5h2"; depends=[Biobase]; }; tximportData = derive2 { name="tximportData"; version="1.22.0"; sha256="0fyy487874h2aqb5lvjndn8fgs708m3lv4am42xcjpky98b3zl71"; depends=[]; }; vulcandata = derive2 { name="vulcandata"; version="1.16.0"; sha256="0apb9s4hm3a2hqwa81l58havrdwx2b8wl52xcb62b398f9mblhgb"; depends=[]; }; diff --git a/pkgs/development/r-modules/bioc-packages.nix b/pkgs/development/r-modules/bioc-packages.nix index 02e344295357..e771b2da216f 100644 --- a/pkgs/development/r-modules/bioc-packages.nix +++ b/pkgs/development/r-modules/bioc-packages.nix @@ -114,8 +114,8 @@ in with self; { BiocNeighbors = derive2 { name="BiocNeighbors"; version="1.12.0"; sha256="04in8l6j7frgm0a5dzphazfhn9cm8w775z5yir712jxa37mh1agr"; depends=[BiocParallel Matrix Rcpp RcppHNSW S4Vectors]; }; BiocOncoTK = derive2 { name="BiocOncoTK"; version="1.14.0"; sha256="1h5s6wbc5n5x5d28rynxpcmaklxdhf72g9gg9fy8cg77niipvxd9"; depends=[bigrquery car ComplexHeatmap curatedTCGAData DBI dplyr DT GenomicFeatures GenomicRanges ggplot2 ggpubr graph httr IRanges magrittr plyr Rgraphviz rjson S4Vectors scales shiny SummarizedExperiment]; }; BiocParallel = derive2 { name="BiocParallel"; version="1.28.0"; sha256="0jqgbpjppwinzw100qhc42kc95znq6xanl26bi8m9cq7yggbpra6"; depends=[BH futile_logger snow]; }; - BiocPkgTools = derive2 { name="BiocPkgTools"; version="1.12.0"; sha256="13m6h35938407ajj7fakl50g4p2wsvinkg0r2mwl1zwq88735arg"; depends=[BiocFileCache BiocManager biocViews dplyr DT gh graph htmltools htmlwidgets httr igraph jsonlite magrittr RBGL readr rlang rvest stringr tibble tidyr tidyselect xml2]; }; - BiocSet = derive2 { name="BiocSet"; version="1.8.0"; sha256="0ysm68gcalg3d91jx6vmdzra01vc6kvzqnvz557g3rnm0wkx12q6"; depends=[AnnotationDbi BiocIO dplyr KEGGREST ontologyIndex plyr rlang S4Vectors tibble tidyr]; }; + BiocPkgTools = derive2 { name="BiocPkgTools"; version="1.12.2"; sha256="1yz2sgx4xrnw22k3d6q6hkj213bnbb4hbr5ymxnmjnsz551s75ny"; depends=[BiocFileCache BiocManager biocViews dplyr DT gh graph htmltools htmlwidgets httr igraph jsonlite magrittr RBGL readr rlang rvest stringr tibble tidyr tidyselect xml2]; }; + BiocSet = derive2 { name="BiocSet"; version="1.8.1"; sha256="1x5ar9byr85iap2x6y66j31fi17wr31awx1gl3z01sckp0dldx6w"; depends=[AnnotationDbi BiocIO dplyr KEGGREST ontologyIndex plyr rlang S4Vectors tibble tidyr]; }; BiocSingular = derive2 { name="BiocSingular"; version="1.10.0"; sha256="0dkh6a23qymjcynppmpp3k1mzpfadv8dqyz410pxkqsxig4ldd4n"; depends=[beachmat BiocGenerics BiocParallel DelayedArray irlba Matrix Rcpp rsvd S4Vectors ScaledMatrix]; }; BiocSklearn = derive2 { name="BiocSklearn"; version="1.16.0"; sha256="0iscm2h4i7b50h4bfrrcafai14aq5wa5987awpzyk285gwifp6aw"; depends=[basilisk knitr Rcpp reticulate SummarizedExperiment]; }; BiocStyle = derive2 { name="BiocStyle"; version="2.22.0"; sha256="0xx6xr01sb5wig94515zxgw24r9fv0g962ajy87741civhq32lbd"; depends=[BiocManager bookdown knitr rmarkdown yaml]; }; @@ -134,7 +134,7 @@ in with self; { CAEN = derive2 { name="CAEN"; version="1.2.0"; sha256="0jxi9bgbb3dnhcgm93qx611bnl23s7lk9msmxqbnlyhjprmbsqnz"; depends=[PoiClaClu SummarizedExperiment]; }; CAFE = derive2 { name="CAFE"; version="1.30.0"; sha256="130jidd1jxlgkv3sq8bgqyrn51dhb9yf67dlnjhf7xbvlyvx179g"; depends=[affy annotate Biobase biovizBase GenomicRanges ggbio ggplot2 gridExtra IRanges]; }; CAGEfightR = derive2 { name="CAGEfightR"; version="1.14.0"; sha256="08v16d9al8l7a31sncwpi79i7770v5gr2bf2q7i07xxdsf496yr9"; depends=[assertthat BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicInteractions GenomicRanges Gviz InteractionSet IRanges Matrix pryr rtracklayer S4Vectors SummarizedExperiment]; }; - CAGEr = derive2 { name="CAGEr"; version="2.0.0"; sha256="0a116v3hxrfjm8fcq27vs260wygw0hbj4f3s063za8l45fdpamv6"; depends=[BiocGenerics BiocParallel BSgenome data_table DelayedArray DelayedMatrixStats formula_tools GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges KernSmooth memoise MultiAssayExperiment plyr reshape2 Rsamtools rtracklayer S4Vectors som stringdist stringi SummarizedExperiment vegan VGAM]; }; + CAGEr = derive2 { name="CAGEr"; version="2.0.1"; sha256="1mhdiiy3mffd0ivmcc7fs28h98c4qhsd62c9xf3w0pv5diy1xv9f"; depends=[BiocGenerics BiocParallel BSgenome data_table DelayedArray DelayedMatrixStats formula_tools GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges KernSmooth memoise MultiAssayExperiment plyr reshape2 Rsamtools rtracklayer S4Vectors som stringdist stringi SummarizedExperiment vegan VGAM]; }; CAMERA = derive2 { name="CAMERA"; version="1.50.0"; sha256="1mgdmzlbj8yhk6jmnqaw4xmss77v7csdajd240kiswvm1f317z3h"; depends=[Biobase graph Hmisc igraph RBGL xcms]; }; CARNIVAL = derive2 { name="CARNIVAL"; version="2.4.0"; sha256="10wbdjripgndfaqx2aysmqhc9v8i94db8bf0bb89csmvmnia68c6"; depends=[dplyr igraph lpSolve readr rjson rmarkdown stringr]; }; CATALYST = derive2 { name="CATALYST"; version="1.18.0"; sha256="15lah45lf16zh1ankbpjvz8zp38lldvq074nmvb99rhhqys2gbgi"; depends=[circlize ComplexHeatmap ConsensusClusterPlus cowplot data_table dplyr drc flowCore FlowSOM ggplot2 ggrepel ggridges gridExtra magrittr Matrix matrixStats nnls purrr RColorBrewer reshape2 Rtsne S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; }; @@ -332,7 +332,7 @@ in with self; { FELLA = derive2 { name="FELLA"; version="1.14.0"; sha256="0xs4qky42nz80qmbnb5b925ks76xxpa5mymvrcllzzhbyax2dddc"; depends=[igraph KEGGREST Matrix plyr]; }; FGNet = derive2 { name="FGNet"; version="3.28.0"; sha256="0mz728i1ylbhwxb41xghrl7aaz5a3s3iaysi0hl7jjmiixvscp90"; depends=[hwriter igraph plotrix png R_utils RColorBrewer reshape2 XML]; }; FISHalyseR = derive2 { name="FISHalyseR"; version="1.28.0"; sha256="0z9wlk98xicc6bcyx11q25sxrfdiiwcx32bvp3l3xi5r99alwwlp"; depends=[abind EBImage]; }; - FLAMES = derive2 { name="FLAMES"; version="0.99.31"; sha256="098fg6jky98y0wlrrinmjb7r4yf9s40c2kwp0xrn0z5paczj4y56"; depends=[basilisk dplyr magrittr Rcpp reticulate Rhtslib Rsamtools S4Vectors scater scuttle SingleCellExperiment SummarizedExperiment tidyr zlibbioc]; }; + FLAMES = derive2 { name="FLAMES"; version="1.0.2"; sha256="025q9sfj3q5hgqncf61kfg90wlv7ddkqcnv1qgvsxy7cca7x1dyi"; depends=[basilisk dplyr magrittr Rcpp reticulate Rhtslib Rsamtools S4Vectors scater scuttle SingleCellExperiment SummarizedExperiment tidyr zlibbioc]; }; FRASER = derive2 { name="FRASER"; version="1.6.0"; sha256="07xj7fznqmsc71j1s6h7g8jq8cg93hys3q20f7lja6l9032rl5rx"; depends=[AnnotationDbi BBmisc Biobase BiocGenerics BiocParallel biomaRt BSgenome cowplot data_table DelayedArray DelayedMatrixStats extraDistr generics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel HDF5Array IRanges matrixStats OUTRIDER pcaMethods pheatmap plotly PRROC R_utils RColorBrewer Rcpp RcppArmadillo rhdf5 Rsamtools Rsubread S4Vectors SummarizedExperiment tibble VGAM]; }; FRGEpistasis = derive2 { name="FRGEpistasis"; version="1.30.0"; sha256="1b69g11klf2av1an1h50vz6bkpkjg4v1a2mi9lj0bmwsi7kb7j32"; depends=[fda MASS]; }; FScanR = derive2 { name="FScanR"; version="1.4.0"; sha256="1xsbf8vxck17s1shs2gxls02wzm3qr9wy8iwr8zqk9gsm5niax4z"; depends=[]; }; @@ -670,7 +670,7 @@ in with self; { OMICsPCA = derive2 { name="OMICsPCA"; version="1.12.0"; sha256="0d5hplm94k7hz6lap31jsb5pdh8lb7xl9i0swznm5vzrxrjdifyd"; depends=[cluster clValid corrplot cowplot data_table factoextra FactoMineR fpc GenomeInfoDb ggplot2 HelloRanges IRanges kableExtra magick MASS MultiAssayExperiment NbClust OMICsPCAdata pdftools PerformanceAnalytics reshape2 rgl rmarkdown rtracklayer tidyr]; }; OPWeight = derive2 { name="OPWeight"; version="1.16.0"; sha256="1zkbhb70aam3g1arfb8bc8z4c4bd1qyr1zidz6srx1n25pkhp4ii"; depends=[MASS qvalue tibble]; }; ORFhunteR = derive2 { name="ORFhunteR"; version="1.2.0"; sha256="0jkpq3hiv6n5c4hy3khs59020p98ig91w78ab37jam3sibykr0c6"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg38 data_table Peptides randomForest Rcpp rtracklayer stringr xfun]; }; - ORFik = derive2 { name="ORFik"; version="1.13.14"; sha256="0m7hf3a7bwz5yawl364c68g31q0syi03vlga0hhgy2hm9f3g0ips"; depends=[AnnotationDbi BiocGenerics BiocParallel biomartr Biostrings BSgenome cowplot data_table DESeq2 fst GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra httr IRanges R_utils Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment xml2]; }; + ORFik = derive2 { name="ORFik"; version="1.14.5"; sha256="11whi2irq947hpz1w9d9spl8dm8m022x9brcr82n9hx71bkxzh4v"; depends=[AnnotationDbi BiocGenerics BiocParallel biomartr Biostrings BSgenome cowplot data_table DESeq2 fst GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra httr IRanges R_utils Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment xml2]; }; OSAT = derive2 { name="OSAT"; version="1.42.0"; sha256="1ibhrrlfjjils0w6n586s5ws0ybv7ija2p2f0jq3m3m9l324iyx9"; depends=[]; }; OTUbase = derive2 { name="OTUbase"; version="1.44.0"; sha256="18wmllkc3h8x9ihrg0lzk4jvxjwrccl1jr37inkdmzv4aq5b7ygs"; depends=[Biobase Biostrings IRanges S4Vectors ShortRead vegan]; }; OUTRIDER = derive2 { name="OUTRIDER"; version="1.12.0"; sha256="0ygsk0q1n8h02y4x3ccajkyyryn8gq0dz397l3jryb248g564a4h"; depends=[BBmisc BiocGenerics BiocParallel data_table DESeq2 generics GenomicFeatures GenomicRanges ggplot2 heatmaply IRanges matrixStats pcaMethods pheatmap plotly plyr PRROC RColorBrewer Rcpp RcppArmadillo reshape2 S4Vectors scales SummarizedExperiment]; }; @@ -858,14 +858,14 @@ in with self; { Rsubread = derive2 { name="Rsubread"; version="2.8.0"; sha256="09kd7vl2z9k82ppfzy679hs7d00c60z3w3n6a8wq4z3k3f4glc3s"; depends=[Matrix]; }; Rtpca = derive2 { name="Rtpca"; version="1.4.0"; sha256="05i25sfgdqsnw9ky0p25aix8qrzkirmcl5vvpqrv8bwvs335glm4"; depends=[Biobase dplyr fdrtool ggplot2 pROC tibble tidyr]; }; Rtreemix = derive2 { name="Rtreemix"; version="1.56.0"; sha256="15kr8y8w059bxhl9x7j7qg01b55jsxfmfzgdyxk6l40i3l4i0wh1"; depends=[Biobase graph Hmisc]; }; - S4Vectors = derive2 { name="S4Vectors"; version="0.32.0"; sha256="1zm1xlqrq1f9xa81j3ij2p78g3aywq7izsk3h40z94fjggahvc09"; depends=[BiocGenerics]; }; + S4Vectors = derive2 { name="S4Vectors"; version="0.32.1"; sha256="0if4mmg0wmfh92khpqkn8ydm7rha0wraa0vnjn6fak3rzlz77ncd"; depends=[BiocGenerics]; }; SAIGEgds = derive2 { name="SAIGEgds"; version="1.8.0"; sha256="08jhqpi13kg69nfl425m6rvgyvzfspfylgnzkk1v6v0kaz5876f2"; depends=[gdsfmt Rcpp RcppArmadillo RcppParallel SeqArray SPAtest]; }; SANTA = derive2 { name="SANTA"; version="2.30.0"; sha256="0w0rd0vmjvz98ijk53ikpin7x5acl0yfkb2v7y77ma6lizy70rgl"; depends=[igraph Matrix]; }; SBGNview = derive2 { name="SBGNview"; version="1.8.0"; sha256="17jh1ad1a951r89xd9127c1wv5s4rzd03qq8rh5zjn2zxzpwswr4"; depends=[AnnotationDbi bookdown httr igraph KEGGREST knitr pathview Rdpack rmarkdown rsvg SBGNview_data SummarizedExperiment xml2]; }; SBMLR = derive2 { name="SBMLR"; version="1.90.0"; sha256="08cvhlrh13v571jc0fgfiwzc041nq2ndxpy5nsxmgpbsw5ryfgff"; depends=[deSolve XML]; }; SC3 = derive2 { name="SC3"; version="1.22.0"; sha256="1vbzinr4aiskv9hjbqqzzy3chj48lzk9vv1zk7vr9v8w6qwlg3fm"; depends=[BiocGenerics cluster doParallel doRNG e1071 foreach ggplot2 pheatmap Rcpp RcppArmadillo robustbase ROCR rrcov S4Vectors shiny SingleCellExperiment SummarizedExperiment WriteXLS]; }; SCAN_UPC = derive2 { name="SCAN.UPC"; version="2.36.0"; sha256="16d161x1npa4lh6ckp0p9ykdrj3x36gsylmq1kjm2vw8g4zknszv"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; }; - SCANVIS = derive2 { name="SCANVIS"; version="1.7.0"; sha256="163026iz66687s7d27sj78vvn5n6df66qf0s5zxaallyx2gmh56x"; depends=[IRanges plotrix RCurl rtracklayer]; }; + SCANVIS = derive2 { name="SCANVIS"; version="1.8.0"; sha256="08cpq7cklv1z108cy0d6abv8xq8ins4ihdwzr04fr8bg2ikbi21z"; depends=[IRanges plotrix RCurl rtracklayer]; }; SCATE = derive2 { name="SCATE"; version="1.4.0"; sha256="1b04bggi0rw9jmgak5j2ca6msqdrq1qdphg3g9w77a1rqyxza86s"; depends=[GenomicAlignments GenomicRanges mclust preprocessCore Rtsne SCATEData splines2 xgboost]; }; SCArray = derive2 { name="SCArray"; version="1.2.0"; sha256="1jji2cikxkc40zaqwcknrpz5a6nyrqhbirx5ivsdnwslm8l79xmk"; depends=[BiocGenerics DelayedArray DelayedMatrixStats gdsfmt IRanges S4Vectors SingleCellExperiment SummarizedExperiment]; }; SCBN = derive2 { name="SCBN"; version="1.12.0"; sha256="19jpbr5nr59dc9khbbx60gzbsg8llfd1zqwb9v88nr43v059k13f"; depends=[]; }; @@ -934,7 +934,7 @@ in with self; { Spaniel = derive2 { name="Spaniel"; version="1.8.0"; sha256="0js302hgxn0q9xy7s6pdxidvhfcvm711bci6cw3a3bwhq2kacvnc"; depends=[dplyr DropletUtils ggplot2 igraph jpeg jsonlite magrittr png S4Vectors scater scran Seurat shiny SingleCellExperiment SummarizedExperiment]; }; SparseSignatures = derive2 { name="SparseSignatures"; version="2.4.0"; sha256="0hz48bvw20qdvfb5ci4d9zq3znpzklv0mhhxrpd8n23xv8amby0l"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges NMF nnlasso nnls reshape2]; }; SpatialCPie = derive2 { name="SpatialCPie"; version="1.10.0"; sha256="0ml8fbjhnb2azvfcplpaw2zfvngkxn7z81d1s5f2shiww6x3qb8f"; depends=[colorspace data_table digest dplyr ggforce ggiraph ggplot2 ggrepel igraph lpSolve purrr readr rlang shiny shinycssloaders shinyjs shinyWidgets SummarizedExperiment tibble tidyr tidyselect zeallot]; }; - SpatialDecon = derive2 { name="SpatialDecon"; version="1.3.0"; sha256="1gbkdp2d5x6apmlv35rg1vjfnfsyp1dvchgdlq4yzqkslc7jib7y"; depends=[logNormReg]; }; + SpatialDecon = derive2 { name="SpatialDecon"; version="1.4.3"; sha256="11hb28m7h78cvzz9s545jzssnbxjbhfmdb03rxbvxq1rdh0whljr"; depends=[Biobase GeomxTools Matrix repmis SeuratObject]; }; SpatialExperiment = derive2 { name="SpatialExperiment"; version="1.4.0"; sha256="1jn2xr51hv1pm53pgsilhbwal0bnz7mc17z5plpjxgh7jn9bx4x2"; depends=[BiocFileCache BiocGenerics DropletUtils magick rjson S4Vectors SingleCellExperiment SummarizedExperiment]; }; SpeCond = derive2 { name="SpeCond"; version="1.48.0"; sha256="1mpzf9l7yim59wfg244rzqxm9vb10lp88688p5v2whcv5xx0a34a"; depends=[Biobase fields hwriter mclust RColorBrewer]; }; Spectra = derive2 { name="Spectra"; version="1.4.0"; sha256="1kgwm040j23mjihym0kg5r9qz4f1ssfvnd3f6m5jasx59wgpv46f"; depends=[BiocGenerics BiocParallel fs IRanges MsCoreUtils ProtGenerics S4Vectors]; }; @@ -973,7 +973,7 @@ in with self; { TMixClust = derive2 { name="TMixClust"; version="1.16.0"; sha256="1i69q92ss9q2vv6hyxvq8wv55w1937rmda43a8qfblzy0jr5avww"; depends=[Biobase BiocParallel cluster flexclust gss mvtnorm SPEM zoo]; }; TNBC_CMS = derive2 { name="TNBC.CMS"; version="1.10.0"; sha256="1iz2jb895hsliavk9g93mvvccla461cmifmsam3qdscj09gfl17x"; depends=[e1071 forestplot GGally ggplot2 ggpubr GSVA pheatmap pracma quadprog R_utils RColorBrewer SummarizedExperiment survival]; }; TOAST = derive2 { name="TOAST"; version="1.7.1"; sha256="1r0kpk6i1b5r5swp4l5yw8mid719li4yqa82p9kzmgg7z0xxvmaz"; depends=[corpcor EpiDISH limma nnls SummarizedExperiment]; }; - TPP = derive2 { name="TPP"; version="3.22.0"; sha256="1sa5scbv3ck17v02czmj8c9kva5xzdbcqpfm4l9p4wn8xw6v9hk3"; depends=[Biobase biobroom broom data_table doParallel dplyr foreach futile_logger ggplot2 gridExtra knitr limma magrittr MASS mefa nls2 openxlsx plyr purrr RColorBrewer RCurl reshape2 rmarkdown stringr tibble tidyr VennDiagram VGAM]; }; + TPP = derive2 { name="TPP"; version="3.22.1"; sha256="0vr8sv22rhhrv63arz33vbkp5i3cwd03bz54qwx3zbdcf5l3snhy"; depends=[Biobase biobroom broom data_table doParallel dplyr foreach futile_logger ggplot2 gridExtra knitr limma magrittr MASS mefa nls2 openxlsx plyr purrr RColorBrewer RCurl reshape2 rmarkdown stringr tibble tidyr VennDiagram VGAM]; }; TPP2D = derive2 { name="TPP2D"; version="1.10.0"; sha256="183gf3v1nj0nqll817whxdif0kiwscil88ig0vjj1hn3936q59v6"; depends=[BiocParallel doParallel dplyr foreach ggplot2 limma MASS openxlsx RCurl stringr tidyr]; }; TRESS = derive2 { name="TRESS"; version="1.0.0"; sha256="0zmzbpzhcsykbpifs5m8md2lhami0ya7y9sf2rdmadgbx17gvzj7"; depends=[AnnotationDbi GenomicFeatures GenomicRanges IRanges Matrix matrixStats Rsamtools rtracklayer S4Vectors]; }; TRONCO = derive2 { name="TRONCO"; version="2.26.0"; sha256="0xjjv67mcgb90f6r3i6qy9d8k6sif4asq7qiiq1bhs90806jrrsb"; depends=[bnlearn cgdsr circlize doParallel foreach gridExtra gtable gtools igraph iterators R_matlab RColorBrewer Rgraphviz scales xtable]; }; @@ -1105,11 +1105,11 @@ in with self; { biobroom = derive2 { name="biobroom"; version="1.26.0"; sha256="034gbywrscv23kk1qnk7sc7dxdckmf60wh29fz65v1n28mkf180r"; depends=[Biobase broom dplyr tidyr]; }; biobtreeR = derive2 { name="biobtreeR"; version="1.6.0"; sha256="0m9gx2g5ishbbh7aqp09mpknhr7q1v5ap0s6xp6ccj01pz2gkk8s"; depends=[httpuv httr jsonlite stringi]; }; biocGraph = derive2 { name="biocGraph"; version="1.56.0"; sha256="0c7r0c1kx22dlwi6d1ldbkkbf53yi0p3vmgbwzrbkn3cina7bcxq"; depends=[BiocGenerics geneplotter graph Rgraphviz]; }; - biocViews = derive2 { name="biocViews"; version="1.62.0"; sha256="094npjhjv3ncd49fzzq1p8rv274r2h1h87la81sy1haf1dbppnh9"; depends=[Biobase BiocManager graph RBGL RCurl RUnit XML]; }; + biocViews = derive2 { name="biocViews"; version="1.62.1"; sha256="1v6himzp546dpb990vv0nlya21w8x2x30137rsmahjzg942nzs9r"; depends=[Biobase BiocManager graph RBGL RCurl RUnit XML]; }; biocthis = derive2 { name="biocthis"; version="1.4.0"; sha256="0kh5lmv992v4r5r58x29403cll0zxr9fx4ar81nrzvnch5668v39"; depends=[BiocManager fs glue rlang styler usethis]; }; biodb = derive2 { name="biodb"; version="1.2.0"; sha256="0q343zbx341xdy634p50k7bj6byv8v2rqzy50nw75a79206pajl4"; depends=[BiocFileCache chk jsonlite lgr lifecycle openssl plyr progress R6 rappdirs Rcpp RCurl RSQLite stringr testthat withr XML yaml]; }; biodbChebi = derive2 { name="biodbChebi"; version="1.0.1"; sha256="1f1bbfk0zp7x07vgnskd0wxb0zv2pvjk22cndw2zn7pgds0g9d9d"; depends=[biodb R6]; }; - biodbHmdb = derive2 { name="biodbHmdb"; version="1.0.0"; sha256="0ngg6gjpcbxs33lq7kwa2a7h88irdvk9z96lfi4gcsgp3rjp782x"; depends=[biodb R6 Rcpp testthat]; }; + biodbHmdb = derive2 { name="biodbHmdb"; version="1.0.1"; sha256="097ia9xzc4pc84n79wadymsmzlip1ygqm54x4fh2hdfinib8mjgb"; depends=[biodb R6 Rcpp testthat]; }; biodbKegg = derive2 { name="biodbKegg"; version="1.0.0"; sha256="16xmm3ymzd4jf55plahbxi844hpv0hpqq6v2ygcjf6wrs0yy2mhd"; depends=[biodb chk lifecycle R6]; }; biodbLipidmaps = derive2 { name="biodbLipidmaps"; version="1.0.1"; sha256="14086f88r7mavpzp823mhpi4b9zq8q2kqxlwnmp02i03jj8mjnr8"; depends=[biodb lifecycle R6]; }; biodbUniprot = derive2 { name="biodbUniprot"; version="1.0.0"; sha256="1aydkqqb8vs5b844ff1j09a7g8rmf7qr6rg2aw8nqshihq510v4d"; depends=[biodb R6]; }; @@ -1131,7 +1131,7 @@ in with self; { brendaDb = derive2 { name="brendaDb"; version="1.8.0"; sha256="1yprf5hjzhfhzq71q8vzf45j0dakxbdr9rv166m0zs3nk5f75g3r"; depends=[BiocFileCache BiocParallel crayon curl dplyr magrittr purrr rappdirs Rcpp rlang stringr tibble tidyr xml2]; }; bridge = derive2 { name="bridge"; version="1.58.0"; sha256="0qzniimw426vivslf0g99c508298cgwykhzrrjhnjc2bfan63iry"; depends=[rama]; }; bsseq = derive2 { name="bsseq"; version="1.30.0"; sha256="1i30zf6457a0qd64s89x9l544y1h0hj9rfgf1m8l4krd487a9b9d"; depends=[beachmat Biobase BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats GenomeInfoDb GenomicRanges gtools HDF5Array IRanges limma locfit permute R_utils Rcpp rhdf5 S4Vectors scales SummarizedExperiment]; }; - bugsigdbr = derive2 { name="bugsigdbr"; version="1.0.0"; sha256="04msihdxm52nhfy5zrd1wm92p8dss0zy5yb27rrcddflil77rgvc"; depends=[BiocFileCache vroom]; }; + bugsigdbr = derive2 { name="bugsigdbr"; version="1.0.1"; sha256="1wrk9m4ja129d4al3w286hzg2gjcnq5riaa99q35psqcwm1bp94f"; depends=[BiocFileCache vroom]; }; bumphunter = derive2 { name="bumphunter"; version="1.36.0"; sha256="0d5cz9xy7vhcaj5n3h4cfiv08sn7wn83458525pdwvdzzm449xgv"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; }; cBioPortalData = derive2 { name="cBioPortalData"; version="2.6.0"; sha256="0bapc4c9x328l0wrnm6zzq1byf1l33rza8xmadrfqfiq6j56qakq"; depends=[AnVIL BiocFileCache digest dplyr GenomeInfoDb GenomicRanges httr IRanges MultiAssayExperiment RaggedExperiment readr RTCGAToolbox S4Vectors SummarizedExperiment TCGAutils tibble tidyr]; }; cTRAP = derive2 { name="cTRAP"; version="1.12.0"; sha256="13q0pyc6vvxl41hg8cz4rdqrq0vppnna5fw2cin58dm2mayhd6p9"; depends=[AnnotationDbi AnnotationHub binr cowplot data_table dplyr DT fastmatch fgsea ggplot2 ggrepel highcharter htmltools httr limma pbapply purrr qs R_utils readxl reshape2 rhdf5 rlang scales shiny shinycssloaders tibble]; }; @@ -1250,7 +1250,7 @@ in with self; { ddPCRclust = derive2 { name="ddPCRclust"; version="1.14.0"; sha256="13s2h8bfd6i6shbm9iwlz99nvyif6c934ccgkdihgbxfq2zacmdj"; depends=[clue flowCore flowDensity flowPeaks ggplot2 openxlsx plotrix R_utils SamSPECTRAL]; }; dearseq = derive2 { name="dearseq"; version="1.6.0"; sha256="07vr27rv3z86ajd62c0ilvfgz9z35qsiwwi5pv4sygbhnnjwh3rc"; depends=[ggplot2 KernSmooth matrixStats patchwork pbapply statmod survey viridisLite]; }; debCAM = derive2 { name="debCAM"; version="1.12.0"; sha256="1nqc2r9wr4q71zsya0ylwkxc91sqa4zkal26wiv5h10bk5nxig5r"; depends=[apcluster Biobase BiocParallel corpcor DMwR2 geometry NMF nnls pcaPP rJava SummarizedExperiment]; }; - debrowser = derive2 { name="debrowser"; version="1.22.0"; sha256="0d0sy72hyl2jbkfn4fh18yp51hh6qz30yk7iacz69y59c5rcqn8s"; depends=[annotate AnnotationDbi apeglm ashr clusterProfiler colourpicker DESeq2 DOSE DT edgeR enrichplot GenomicRanges ggplot2 gplots Harman heatmaply igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db pathview plotly RColorBrewer RCurl reshape2 S4Vectors shiny shinyBS shinydashboard shinyjs stringi SummarizedExperiment sva]; }; + debrowser = derive2 { name="debrowser"; version="1.22.1"; sha256="0z3jq3xb6bbks5hqikmsb4frp8ilvrz741ir9nyq5cfz5v1djwfv"; depends=[annotate AnnotationDbi apeglm ashr clusterProfiler colourpicker DESeq2 DOSE DT edgeR enrichplot GenomicRanges ggplot2 gplots Harman heatmaply igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db pathview plotly RColorBrewer RCurl reshape2 S4Vectors shiny shinyBS shinydashboard shinyjs stringi SummarizedExperiment sva]; }; deco = derive2 { name="deco"; version="1.10.0"; sha256="1bvn5wipvyxy5h74wl1433pv5lzdp82m8yxwr3b8cljnlqcqh9da"; depends=[ade4 AnnotationDbi Biobase BiocParallel BiocStyle cluster foreign gdata ggplot2 gplots gridExtra limma locfit made4 RColorBrewer reshape2 scatterplot3d sfsmisc SummarizedExperiment]; }; decompTumor2Sig = derive2 { name="decompTumor2Sig"; version="2.10.0"; sha256="125913q735vazmlnvg8vdca8j88y0mx24zdlqzsgzw9ylkwbq86p"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo gridExtra Matrix plyr quadprog readxl S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; decontam = derive2 { name="decontam"; version="1.14.0"; sha256="0k8rp91ap3dwzhhhg3s7ikbphxvgha7m118ayrghshp8929g3cdm"; depends=[ggplot2 reshape2]; }; @@ -1299,7 +1299,7 @@ in with self; { enrichTF = derive2 { name="enrichTF"; version="1.10.0"; sha256="0ssjsl5vh0wdq0584yl6c61d8bp5n3qvkgfrqdlpjfwb7b7gh4xv"; depends=[BiocGenerics BSgenome clusterProfiler GenomeInfoDb GenomicRanges ggplot2 ggpubr heatmap3 IRanges JASPAR2018 magrittr motifmatchr pipeFrame R_utils rmarkdown rtracklayer S4Vectors TFBSTools]; }; enrichplot = derive2 { name="enrichplot"; version="1.14.1"; sha256="0nsx96mkcg0hhg3x8jndzq3xvq9bq7m4yf1b3ry73b17ladx81ch"; depends=[aplot DOSE ggplot2 ggraph ggtree GOSemSim igraph magrittr plyr purrr RColorBrewer reshape2 scatterpie shadowtext yulab_utils]; }; ensemblVEP = derive2 { name="ensemblVEP"; version="1.36.0"; sha256="1b9i8qv16mrr31qpvvcimcd80nkykky8dygi90jinkzgvkzdxi64"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges S4Vectors SummarizedExperiment VariantAnnotation]; }; - ensembldb = derive2 { name="ensembldb"; version="2.18.0"; sha256="02rdbqp33g488w1df1rgp0dg63qrr6w2kmgigxzc8l9wmrvj0y1j"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; }; + ensembldb = derive2 { name="ensembldb"; version="2.18.1"; sha256="1272vflafd5c3zna77lxm8895h6cjv2bvs4vbl3ja1nlg97j0zfk"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; }; epiNEM = derive2 { name="epiNEM"; version="1.18.0"; sha256="0xs9jzy0d9iv45d5ina7ki79wix96318yp17mxhp1l4vdkpm3fk7"; depends=[BoolNet e1071 graph gtools igraph latex2exp lattice latticeExtra minet mnem pcalg RColorBrewer]; }; epialleleR = derive2 { name="epialleleR"; version="1.2.0"; sha256="1zgwwzrg9ngsfq186qsmvgwxcz0b9avr8wk1yadjlrjc9avgh2d3"; depends=[BH BiocGenerics data_table GenomeInfoDb GenomicRanges Rcpp Rhtslib stringi SummarizedExperiment VariantAnnotation zlibbioc]; }; epidecodeR = derive2 { name="epidecodeR"; version="1.2.0"; sha256="1fy3i7djpj2inlcpa2h4n5hzp0q6a555sc5axg1jwxiala9l8siv"; depends=[dplyr EnvStats GenomicRanges ggplot2 ggpubr IRanges rstatix rtracklayer]; }; @@ -1360,7 +1360,7 @@ in with self; { flowPlots = derive2 { name="flowPlots"; version="1.42.0"; sha256="01r6c0hwg34ym0gziirrbk96mapn9pkxhshn0gwb1rqw3jw56cfm"; depends=[]; }; flowSpecs = derive2 { name="flowSpecs"; version="1.8.0"; sha256="018y54w3dg8myywcda41lk07mbd5y99q07i9az0f938a5mb44vd8"; depends=[Biobase BiocGenerics BiocParallel flowCore ggplot2 reshape2 zoo]; }; flowStats = derive2 { name="flowStats"; version="4.6.0"; sha256="0jjfq66m4lbpkynwxaparkd05znhp3jl9ccj37gyghly294x3rm9"; depends=[Biobase BiocGenerics cluster fda flowCore flowViz flowWorkspace KernSmooth ks lattice MASS ncdfFlow RColorBrewer rrcov]; }; - flowTime = derive2 { name="flowTime"; version="1.17.0"; sha256="160vx3zj34hf75rwbs0v0xa0skyzjg5q6l2qgajfyhz436i95lxl"; depends=[dplyr flowCore magrittr plyr rlang tibble]; }; + flowTime = derive2 { name="flowTime"; version="1.18.0"; sha256="1kvy9gpyrc32041y6ngx6kqy3qikc5d48qrsmifm2xw9nxizk4m1"; depends=[dplyr flowCore magrittr plyr rlang tibble]; }; flowTrans = derive2 { name="flowTrans"; version="1.46.0"; sha256="1fkpma9a2097qay6mkswb7sb8jshvjmjldppz67l840d7mhkkpab"; depends=[flowClust flowCore flowViz]; }; flowUtils = derive2 { name="flowUtils"; version="1.58.0"; sha256="0rgybkzbn8c3kpbz0ddghp1np0gka0cgiqvkk5jbnhlgf4s07161"; depends=[Biobase corpcor flowCore graph RUnit XML]; }; flowVS = derive2 { name="flowVS"; version="1.26.0"; sha256="02vikjzbi5r426l6085rfdqqvy8n8yaq7fwli18q385nb81vah7i"; depends=[flowCore flowStats flowViz]; }; @@ -1408,7 +1408,7 @@ in with self; { gespeR = derive2 { name="gespeR"; version="1.26.0"; sha256="0fd204abvfmgl8gqqr0vnsjsihmbi4wb9q6slbnf8b0gkhpqhafq"; depends=[Biobase biomaRt cellHTS2 doParallel dplyr foreach ggplot2 glmnet Matrix reshape2]; }; getDEE2 = derive2 { name="getDEE2"; version="1.4.0"; sha256="04dqxx2qj3lwfpiv07s9dlgxc7as59cj7qbima9v09cnyciqkib6"; depends=[htm2txt SummarizedExperiment]; }; geva = derive2 { name="geva"; version="1.2.0"; sha256="0rx67qq52iab9qs8apb5a9j91cg9gn7z2xs56wpccd2ba72wdic8"; depends=[dbscan fastcluster matrixStats]; }; - ggbio = derive2 { name="ggbio"; version="1.41.0"; sha256="02vpn2z0xlvahhr43hrimiljs446iwghiva4q6khi0a8r1jb5xsr"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings biovizBase BSgenome ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 rlang Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; }; + ggbio = derive2 { name="ggbio"; version="1.42.0"; sha256="1svmjaa3gisi39sl52337drvd54havcy5pjmwrykgykz5flid2m7"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings biovizBase BSgenome ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 rlang Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; }; ggcyto = derive2 { name="ggcyto"; version="1.22.0"; sha256="17dnmsa92gc2za36c3klgd7rklqlxrhkzs5ksnrc1am6a4knc0p1"; depends=[data_table flowCore flowWorkspace ggplot2 gridExtra hexbin ncdfFlow plyr RColorBrewer rlang scales]; }; ggmsa = derive2 { name="ggmsa"; version="1.0.0"; sha256="0w4jqmsa87ijflmyya8fnwmgha6s5ax2r9d67b0a3d7yz3d1kms8"; depends=[aplot Biostrings dplyr ggalt ggforce ggplot2 magrittr R4RNA RColorBrewer seqmagick tidyr]; }; ggspavis = derive2 { name="ggspavis"; version="1.0.0"; sha256="0lm7z8fzvw47zq618lfyxszy42qwhjr71xsyjsygvcl604z68jx0"; depends=[ggplot2 ggside SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; @@ -1460,7 +1460,7 @@ in with self; { iBMQ = derive2 { name="iBMQ"; version="1.34.0"; sha256="1b15xiv8g8p2qy3dhg80ggppri9v7hawjz2kaj8an231vgl7j546"; depends=[Biobase ggplot2]; }; iCARE = derive2 { name="iCARE"; version="1.22.0"; sha256="17x6kcrl2wrnj7dmvbyw3cflhv07hymyy78mj0476x0w7aiihwjw"; depends=[gtools Hmisc plotrix]; }; iCNV = derive2 { name="iCNV"; version="1.14.0"; sha256="1hhmnlq3sliz253badrcwbkdr384pyl2jb3s0dkp585gngz143xg"; depends=[CODEX data_table dplyr fields ggplot2 rlang tidyr truncnorm]; }; - iCOBRA = derive2 { name="iCOBRA"; version="1.22.0"; sha256="0qg32g1rfvh6mx8wny1lrva9vc347288hzml7yb4rnrsx1hggkpa"; depends=[dplyr DT ggplot2 limma reshape2 ROCR scales shiny shinyBS shinydashboard UpSetR]; }; + iCOBRA = derive2 { name="iCOBRA"; version="1.22.1"; sha256="05j3h314l2bw8n61h1nyiqhm3z7c1axycn4p3xkfccq5i4mcqvn2"; depends=[dplyr DT ggplot2 limma reshape2 ROCR scales shiny shinyBS shinydashboard UpSetR]; }; iCheck = derive2 { name="iCheck"; version="1.24.0"; sha256="06nfnj5267j9ynhz8hkzvada1d1yk62zqynif5xm6n7m9sk9fsl5"; depends=[affy Biobase GeneSelectMMD gplots limma lmtest lumi MASS preprocessCore randomForest rgl scatterplot3d]; }; iChip = derive2 { name="iChip"; version="1.48.0"; sha256="1zlwkw2qva32v515pziif6gdik5a5hqs53f3im12fzn3wgpcxvh0"; depends=[limma]; }; iClusterPlus = derive2 { name="iClusterPlus"; version="1.30.0"; sha256="0w6r2clk8wdnnnjmq3cspmxiq1c8vwprd66xmdrhcqzbjkpkdw2b"; depends=[]; }; @@ -1590,7 +1590,7 @@ in with self; { miRcomp = derive2 { name="miRcomp"; version="1.24.0"; sha256="1kknr5m62ly03p5yzam5c3hwpaky25g3y92h6z3sg7xfjgsd9qpz"; depends=[Biobase KernSmooth miRcompData]; }; miRmine = derive2 { name="miRmine"; version="1.16.0"; sha256="0cx7181dsfclq2dplx1wcgnaqhxlgyfxsi0g4ii82yp1ka5fpml4"; depends=[SummarizedExperiment]; }; miRspongeR = derive2 { name="miRspongeR"; version="1.20.0"; sha256="06nczhbbvx1dmmwry88057zbvw3dq64qn5mn91ipi5qfnckb84wd"; depends=[clusterProfiler corpcor DOSE igraph linkcomm MCL org_Hs_eg_db Rcpp ReactomePA survival varhandle]; }; - mia = derive2 { name="mia"; version="1.1.19"; sha256="0fzmp349pwlka8qw58mym9zi0z35i7cfs3dnfxlygj58f9a41dk5"; depends=[ape BiocGenerics BiocParallel Biostrings DECIPHER decontam DelayedArray DelayedMatrixStats DirichletMultinomial dplyr IRanges MASS rlang S4Vectors scater scuttle SingleCellExperiment SummarizedExperiment tibble tidyr TreeSummarizedExperiment vegan]; }; + mia = derive2 { name="mia"; version="1.2.0"; sha256="1bn5wrhx95yyfp178cz3xpxvqvjf6sy6xch510afbr7rarmyjrnp"; depends=[ape BiocGenerics BiocParallel Biostrings DECIPHER decontam DelayedArray DelayedMatrixStats DirichletMultinomial dplyr IRanges MASS rlang S4Vectors scater scuttle SingleCellExperiment SummarizedExperiment tibble tidyr TreeSummarizedExperiment vegan]; }; miaSim = derive2 { name="miaSim"; version="1.0.0"; sha256="0870jvqwcg08fyzb4c9qsb6sk7r4sxqzrrfzijd25sdjbqly4zzx"; depends=[deSolve poweRlaw SummarizedExperiment]; }; miaViz = derive2 { name="miaViz"; version="1.2.0"; sha256="1plkr810cnb6kq7zqlmnx8c2mfa1gzsa92r1hj6xrqx9ykc8hapd"; depends=[ape BiocGenerics BiocParallel DelayedArray DirichletMultinomial dplyr ggnewscale ggplot2 ggraph ggtree mia purrr rlang S4Vectors scater SummarizedExperiment tibble tidygraph tidyr tidytree TreeSummarizedExperiment viridis]; }; microRNA = derive2 { name="microRNA"; version="1.52.0"; sha256="0x145alfh8qnbnhahxhfygcqc4xwiiirabl9k9nbcyadc5fawfc1"; depends=[Biostrings]; }; @@ -1611,7 +1611,7 @@ in with self; { mistyR = derive2 { name="mistyR"; version="1.2.1"; sha256="1a3z8d1n0asis3fmpzsiyj13mhrsm72lqx36y4bj6rf3vhzsxny3"; depends=[assertthat caret deldir digest distances dplyr filelock furrr ggplot2 MASS purrr R_utils ranger readr rlang rlist stringr tibble tidyr withr]; }; mitch = derive2 { name="mitch"; version="1.6.0"; sha256="1hllnfrc191dz4m8w9b1c4r2l0f44v9nrjan0kmmxhkki408isyn"; depends=[beeswarm echarts4r GGally ggplot2 gplots gridExtra knitr MASS plyr reshape2 rmarkdown]; }; mitoClone2 = derive2 { name="mitoClone2"; version="1.0.0"; sha256="1miycq8vc79i3x2nl44b5icsbnp23brljc3ic92byk0zdcp3dqh5"; depends=[deepSNV GenomicRanges ggplot2 pheatmap reshape2 Rhtslib S4Vectors]; }; - mixOmics = derive2 { name="mixOmics"; version="6.17.26"; sha256="10ir4876sjmw2mw0cjvshwy3qyhsyz6g1ihyr3dycgzya0jcxw1x"; depends=[BiocParallel corpcor dplyr ellipse ggplot2 ggrepel gridExtra igraph lattice MASS matrixStats rARPACK RColorBrewer reshape2 tidyr]; }; + mixOmics = derive2 { name="mixOmics"; version="6.18.0"; sha256="0jwkb5scc33nfn2mibga8vp00pmc24ham71gpkbizvy43cy85icf"; depends=[BiocParallel corpcor dplyr ellipse ggplot2 ggrepel gridExtra igraph lattice MASS matrixStats rARPACK RColorBrewer reshape2 tidyr]; }; mnem = derive2 { name="mnem"; version="1.10.0"; sha256="078x80j1jh7drv4fkly9gayiajszjvbjfk82aslicajh9hn04rmq"; depends=[cluster data_table e1071 flexclust ggplot2 graph lattice Linnorm matrixStats naturalsort Rcpp RcppEigen Rgraphviz snowfall tsne wesanderson]; }; moanin = derive2 { name="moanin"; version="1.2.0"; sha256="1fd4hi32krzwbpxz2qn1sh26zph94lvfkx4gc7dga911r3cms8y2"; depends=[ClusterR edgeR limma MASS matrixStats NMI reshape2 S4Vectors SummarizedExperiment topGO viridis zoo]; }; mogsa = derive2 { name="mogsa"; version="1.28.0"; sha256="0a7d81grd3dn1im4q0xss0qqvgbas9yh5lc24fz05hbfbzwgzr2l"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; }; @@ -1742,7 +1742,7 @@ in with self; { plgem = derive2 { name="plgem"; version="1.66.0"; sha256="06w8xlw4j1fc9ipdgw55dvhp07f04icmhr20lqzwwhqd5pskrra3"; depends=[Biobase MASS]; }; plier = derive2 { name="plier"; version="1.64.0"; sha256="1sw89kici1h2xfg7zvrfdm7b7iw5n3mzwhyz82676w2vk0lgkpn4"; depends=[affy Biobase]; }; plotGrouper = derive2 { name="plotGrouper"; version="1.12.0"; sha256="191grbs8sy8jfxz9a6vsp9qf3zaqppp23fcl5qdrmfzims9krhlw"; depends=[colourpicker dplyr egg ggplot2 ggpubr gridExtra gtable Hmisc magrittr readr readxl rlang scales shiny shinythemes stringr tibble tidyr]; }; - plotgardener = derive2 { name="plotgardener"; version="1.0.0"; sha256="02qqzqb4fdfg3j0hhfjpy8q7xbbsb2n2d79pvsa1dhyihwai5w0q"; depends=[curl data_table dplyr ggplotify plyranges purrr RColorBrewer Rcpp rlang strawr]; }; + plotgardener = derive2 { name="plotgardener"; version="1.0.1"; sha256="1p9h82pah34n1m44fkkwbi5m682icql8xxkf8l7i4dhx6mddv58g"; depends=[curl data_table dplyr ggplotify plyranges purrr RColorBrewer Rcpp rlang strawr]; }; plyranges = derive2 { name="plyranges"; version="1.14.0"; sha256="1s4zyr57x71v9ywdz6s27z158nhazwhmhkx3944l8zsqd5ciwnnc"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges IRanges magrittr rlang Rsamtools rtracklayer S4Vectors tidyselect]; }; pmm = derive2 { name="pmm"; version="1.26.0"; sha256="0vmkpqxf0lfgkbmyvham128201d33dv3wf9g31nrlwnxd0jcxszn"; depends=[lme4]; }; pmp = derive2 { name="pmp"; version="1.6.0"; sha256="15yggymqh329f2ibhmg9wmh76hbyn0gpz9k1cxzkvh787lss1w72"; depends=[ggplot2 impute matrixStats missForest pcaMethods reshape2 S4Vectors SummarizedExperiment]; }; @@ -1946,7 +1946,7 @@ in with self; { snpStats = derive2 { name="snpStats"; version="1.44.0"; sha256="0ha34b5cg26940xihgky45adns1nflrgq2qjq77w4bncxpaacsqq"; depends=[BiocGenerics Matrix survival zlibbioc]; }; soGGi = derive2 { name="soGGi"; version="1.26.0"; sha256="1g2lsi8nqpi2vm284jv1ab3i9k03kwqsy9zf51vfnpqq31lrdlki"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; sojourner = derive2 { name="sojourner"; version="1.8.0"; sha256="0ld1gh6vznmvd09xrza5xs93n3g0vf8zqymn58b23rilsrvm2cbc"; depends=[dplyr EBImage fitdistrplus ggplot2 gridExtra lattice MASS mclust minpack_lm mixtools mltools nls2 pixmap plyr R_matlab Rcpp reshape2 rlang sampSurf scales shiny shinyjs sp truncnorm]; }; - sparrow = derive2 { name="sparrow"; version="1.0.0"; sha256="1rn4mq2hkpn1902iy20vz7npqjjdzglmx0al3r98l3sshh8pqnxc"; depends=[babelgene BiocGenerics BiocParallel BiocSet checkmate circlize ComplexHeatmap data_table DelayedMatrixStats edgeR ggplot2 GSEABase irlba limma Matrix plotly viridis]; }; + sparrow = derive2 { name="sparrow"; version="1.0.1"; sha256="1i0dzj5wnphfhxdl6gmwf3qy8x9v5vb7c35mkq5xml6miwl3x5ha"; depends=[babelgene BiocGenerics BiocParallel BiocSet checkmate circlize ComplexHeatmap data_table DelayedMatrixStats edgeR ggplot2 GSEABase irlba limma Matrix plotly viridis]; }; sparseDOSSA = derive2 { name="sparseDOSSA"; version="1.18.0"; sha256="1rn8jv2b3fmyibgc6h91mhnl9nzqkds02pvj6vbq12pfvhhb021i"; depends=[MASS MCMCpack optparse tmvtnorm]; }; sparseMatrixStats = derive2 { name="sparseMatrixStats"; version="1.6.0"; sha256="0ifqj4a6mn4749sr62gq3dwd6mmbbzdx5mh5b5663vcgl1kw96x1"; depends=[Matrix MatrixGenerics matrixStats Rcpp]; }; sparsenetgls = derive2 { name="sparsenetgls"; version="1.12.0"; sha256="0g8vbzhzyccyi77x49c8idhwy357a2azywvllinjapgwiy88s02a"; depends=[glmnet huge MASS Matrix]; }; @@ -1958,7 +1958,7 @@ in with self; { spikeLI = derive2 { name="spikeLI"; version="2.54.0"; sha256="1ndxvamn2q6ad86dfql1qa7c87xfg8q3zk6f33ip458ikmx16h3f"; depends=[]; }; spiky = derive2 { name="spiky"; version="1.0.0"; sha256="0r8n6icjkhwaq395ikcw64wgks89s84a97xc8lwgrb4lkmnlkgyj"; depends=[bamlss Biostrings BlandAltmanLeh BSgenome GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges Rsamtools S4Vectors scales]; }; spkTools = derive2 { name="spkTools"; version="1.50.0"; sha256="1fbh8lfhl3j7dgx7my3ajjfvzfl0x5rm3m0hszm9dk7zvn6zl67x"; depends=[Biobase gtools RColorBrewer]; }; - splatter = derive2 { name="splatter"; version="1.18.0"; sha256="0wxg4s7xragzd0ixav95jvc1ydizvnszgcvrzsn2fn9hmdi8bc2q"; depends=[BiocGenerics BiocParallel checkmate crayon edgeR fitdistrplus ggplot2 locfit matrixStats S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; }; + splatter = derive2 { name="splatter"; version="1.18.1"; sha256="1cbq3yfgpv54xkgax1m4c4vh29afdfffs7f8xi7fp7acvp365azx"; depends=[BiocGenerics BiocParallel checkmate crayon edgeR fitdistrplus ggplot2 locfit matrixStats S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; }; splineTimeR = derive2 { name="splineTimeR"; version="1.22.0"; sha256="0pbfflicb2zpiddslivyh9i2vly6h8jfbmpm38ljijzshmsvra6v"; depends=[Biobase FIs GeneNet GSEABase gtools igraph limma longitudinal]; }; splots = derive2 { name="splots"; version="1.60.0"; sha256="0ng1shqpjmgbfs4hlcfncq4ipl59a9xwv42h7zcc45hzm7013fq9"; depends=[RColorBrewer]; }; spqn = derive2 { name="spqn"; version="1.6.0"; sha256="081b87w4gsrqp9ny9gqc85g4nm17kxrs2bagxgja280hf7ry2f08"; depends=[BiocGenerics ggplot2 ggridges matrixStats SummarizedExperiment]; }; diff --git a/pkgs/development/r-modules/cran-packages.nix b/pkgs/development/r-modules/cran-packages.nix index b4476665d72e..e51c099f44df 100644 --- a/pkgs/development/r-modules/cran-packages.nix +++ b/pkgs/development/r-modules/cran-packages.nix @@ -4,7 +4,7 @@ # Rscript generate-r-packages.R cran >new && mv new cran-packages.nix { self, derive }: -let derive2 = derive { snapshot = "2021-11-01"; }; +let derive2 = derive { snapshot = "2021-11-06"; }; in with self; { A3 = derive2 { name="A3"; version="1.0.0"; sha256="017hq9pjsv1h9i7cqk5cfx27as54shlhdsdvr6jkhb8jfkpdb6cw"; depends=[pbapply xtable]; }; AATtools = derive2 { name="AATtools"; version="0.0.1"; sha256="08is383xhs2lc9wfffykcwqyl8mwcxfpk3lnvlpkp96hq9m9ikbf"; depends=[doParallel dplyr foreach magrittr]; }; @@ -38,7 +38,7 @@ in with self; { AEDForecasting = derive2 { name="AEDForecasting"; version="0.20.0"; sha256="16q2sn5zzvysyy3r32jnr21pbdkkn0k0sbarni6fdkx7pj27yijn"; depends=[changepoint forecast signal]; }; AEP = derive2 { name="AEP"; version="0.1.2"; sha256="07a3nlkiqbbwbd59n27sgiinlwsgfpy4mn13h41va97wlvd5zl2b"; depends=[]; }; AER = derive2 { name="AER"; version="1.2-9"; sha256="03al0jfxdbi8sqkav7gz3aqbxm32qjdnh4l93vy1jr3n2h5kjy9v"; depends=[car Formula lmtest sandwich survival zoo]; }; - AEenrich = derive2 { name="AEenrich"; version="1.0.0"; sha256="1rly49n3azga6xbfjgg38387pw9mw92j37k5l7ccczay039597ax"; depends=[dplyr magrittr qvalue]; }; + AEenrich = derive2 { name="AEenrich"; version="1.1.0"; sha256="049z696mkwha90w84l60r11q12r3jlam6kyh8abiy0zk2k425san"; depends=[doParallel dplyr foreach magrittr modelr qvalue rlang tidyr]; }; AF = derive2 { name="AF"; version="0.1.5"; sha256="1r87ra55g0qm2s8cgsmdwck93ia2vr8zfab3in45mxm5xc501xgk"; depends=[data_table drgee ivtools stdReg survival]; }; AFM = derive2 { name="AFM"; version="2.0"; sha256="1l0yd68h8vlii1437zhyrxj6fq1ghfaqclk860c25q2d055ajnqd"; depends=[data_table dbscan fftwtools fractaldim ggplot2 gridExtra gstat igraph mixtools moments plyr png pracma rgl scales shiny shinyjs sp stringr]; }; AFheritability = derive2 { name="AFheritability"; version="0.1.0"; sha256="03w0a4z2x539ykyzdxm1mfqkhzz03cg0aqvgi062jrrm5m6f57ix"; depends=[ggplot2 mvtnorm reshape2 shiny]; }; @@ -243,7 +243,6 @@ in with self; { BAEssd = derive2 { name="BAEssd"; version="1.0.1"; sha256="04wkhcj4wm93hvmfnnzryswaylnxz5qsgnqky9lsx4jqhvg340l6"; depends=[mvtnorm]; }; BAGofT = derive2 { name="BAGofT"; version="1.0.0"; sha256="0lvjygnphb2d5cammmswlnyn77vmy3k46r8hh8f3mfr7i68gcdvz"; depends=[dcov randomForest]; }; BALCONY = derive2 { name="BALCONY"; version="0.2.10"; sha256="1wfy0dmwfzd9jp6g92ld8jqzx97grgq4h6dy4y5063vfd9i4slwx"; depends=[Biostrings dplyr progress readr Rpdb scales seqinr]; }; - BALD = derive2 { name="BALD"; version="1.0.0-3"; sha256="1azyqami07g3ax60j0ws3d1qha65k0svn2v5c9pisni0qch5xql0"; depends=[lattice logspline rjags]; }; BALLI = derive2 { name="BALLI"; version="0.2.0"; sha256="0qmjwpj56n07dvjwfknqvc02f0y5mlwh2yz4lrw7c4wqgrckcpgi"; depends=[edgeR limma MASS]; }; BAMBI = derive2 { name="BAMBI"; version="2.3.3"; sha256="0v4rlsam7l3bdq2q7cmg1w2y4m1sj0ab2r2da76yq8rimch00q8g"; depends=[bridgesampling coda future_apply gtools label_switching lattice loo mvtnorm numDeriv qrng RColorBrewer Rcpp RcppArmadillo scales]; }; BAMMtools = derive2 { name="BAMMtools"; version="2.1.8"; sha256="1ply8cj8sh8fn958g52i88gzyify79if41882cmks58diglpi0g5"; depends=[ape gplots Rcpp]; }; @@ -266,7 +265,6 @@ in with self; { BBSSL = derive2 { name="BBSSL"; version="0.1.0"; sha256="0vb3afbx8p3frliy92sf2wlmx32rasxj39i8d023m2dvsblbh50x"; depends=[glmnet greybox Matrix mvnfast rmutil statmod svMisc truncnorm]; }; BBcor = derive2 { name="BBcor"; version="1.0.3"; sha256="160d34an9837i9myw9m0yxplh1z2cmhx2wc7m59dlld5zap4glag"; depends=[bayeslincom ggplot2 pbapply psych Rdpack wdm]; }; BBmisc = derive2 { name="BBmisc"; version="1.11"; sha256="1lh1n4bvxzivb5rbz69mvd8xdgr3gr2bnqd68a39sd1530l8r90y"; depends=[checkmate]; }; - BCA = derive2 { name="BCA"; version="0.9-3"; sha256="0ksd6b0ykydgdn33x29bwwqkrp23cvdj3imps0l6qs1p4465j5nf"; depends=[car clv flexclust Rcmdr RcmdrMisc rpart]; }; BCA1SG = derive2 { name="BCA1SG"; version="0.1.0"; sha256="14jvi5gn19f72szcnyhfpdld00cc7gyih5qrm4bpzvp553f1svvk"; depends=[logOfGamma Matrix]; }; BCBCSF = derive2 { name="BCBCSF"; version="1.0-1"; sha256="0hvhnra68i0x78n57nlbxmz0qwl2flng9w47089jw6f9hzkq9r7n"; depends=[abind]; }; BCC1997 = derive2 { name="BCC1997"; version="0.1.1"; sha256="1lqbivjkc7858jn54av1v9bzp0as43klgndbzkr59dc3l128xp12"; depends=[]; }; @@ -302,7 +300,7 @@ in with self; { BGGM = derive2 { name="BGGM"; version="2.0.4"; sha256="0676viahmid0n89jhs93ci8l7rxpam7rn75mdbshgx7f1q3wqiih"; depends=[BFpack GGally ggplot2 ggridges MASS mvnfast network Rcpp RcppArmadillo RcppDist RcppProgress Rdpack reshape sna]; }; BGLR = derive2 { name="BGLR"; version="1.0.8"; sha256="15cv5k44yj5cws9jjd70hvrkm8gzn5x4hfx408n2fbqbv289b5jy"; depends=[truncnorm]; }; BGSIMD = derive2 { name="BGSIMD"; version="1.0"; sha256="0xkr56z8l72wps7faqi5pna1nzalc3qj09jvd3v9zy8s7zf5r7w4"; depends=[]; }; - BGVAR = derive2 { name="BGVAR"; version="2.4.0"; sha256="0mkm9ay2y0a3mzr14w5nkz8nfb47h3xddrs9jz69zdh77ai7xw1q"; depends=[abind bayesm coda GIGrvg knitr MASS Matrix Rcpp RcppArmadillo RcppParallel RcppProgress readxl stochvol xts zoo]; }; + BGVAR = derive2 { name="BGVAR"; version="2.4.2"; sha256="1g374w5asxlaj6740smv9l82rgcbi47q7i9q2i7m2d6v8zxs57ij"; depends=[abind bayesm coda GIGrvg knitr MASS Matrix Rcpp RcppArmadillo RcppParallel RcppProgress readxl stochvol xts zoo]; }; BGmisc = derive2 { name="BGmisc"; version="0.1"; sha256="15xgm3n3hn5zkrvyfcylyz5q3zah0155914a0rck0ipihb45sbbl"; depends=[Matrix]; }; BH = derive2 { name="BH"; version="1.75.0-0"; sha256="0nkgvl5qjs2a7jv0ncsrl4fqaw2pdaj7a1pncdv6kp874sci0k5f"; depends=[]; }; BHAI = derive2 { name="BHAI"; version="0.99.2"; sha256="1hawa55mk590is8ziav7fdszsa3a42bqb0znzqsazz5lkg4daaa7"; depends=[MCMCpack plotrix prevtoinc]; }; @@ -419,7 +417,6 @@ in with self; { BayesDA = derive2 { name="BayesDA"; version="2012.04-1"; sha256="0fp27cmhw8dsxr4mc1flm6qh907476kph8ch2889g9p31xm1psjc"; depends=[]; }; BayesDesign = derive2 { name="BayesDesign"; version="0.1.1"; sha256="1h69a18wp2z96a002x154d2vd1imzap3zm7yfssm5dh7igha18zc"; depends=[]; }; BayesESS = derive2 { name="BayesESS"; version="0.1.19"; sha256="023r5pxqa2ll3vyfmchdlcg6ay0qixphz24078g1immqp43mlrxm"; depends=[dfcrm LaplacesDemon MASS MatrixModels MCMCpack Rcpp RcppArmadillo RcppEigen]; }; - BayesFM = derive2 { name="BayesFM"; version="0.1.4"; sha256="14m318nxb4aqxni4zm0p6g9pysx81rmay48qglwm98gmdjxigzzk"; depends=[checkmate coda ggplot2 gridExtra plyr]; }; BayesFactor = derive2 { name="BayesFactor"; version="0.9.12-4.2"; sha256="1z083v7is21gm0a458jm5ph3xfdm7mh29a6sg2r1njq82f8x3s3g"; depends=[coda gtools hypergeo Matrix MatrixModels mvtnorm pbapply Rcpp RcppEigen stringr]; }; BayesGESM = derive2 { name="BayesGESM"; version="1.4"; sha256="0qw2byb48f67461m1k8a1rqh6a0c3zq1rc4ni9xzxv8dih4wkq0f"; depends=[Formula GIGrvg normalp]; }; BayesGOF = derive2 { name="BayesGOF"; version="5.2"; sha256="17wm0228xq3db431abyi9jr0q1q86nnajsn7hmy4dwzgvrlz5s0i"; depends=[Bolstad2 nleqslv orthopolynom VGAM]; }; @@ -667,13 +664,12 @@ in with self; { CINNA = derive2 { name="CINNA"; version="1.1.54"; sha256="1fvyxgcvdi3h7cysl08n7gzs5dmv3f9rcw1ds29l8n8w9rz6j7rb"; depends=[centiserve circlize corrplot dendextend factoextra FactoMineR GGally ggplot2 igraph intergraph network pheatmap plyr qdapTools Rtsne sna viridis]; }; CINmetrics = derive2 { name="CINmetrics"; version="0.1.0"; sha256="1csh22b7ap7isnrjak7yp32hasxq8x4j094i9shrnzsz6sxcmc28"; depends=[]; }; CISE = derive2 { name="CISE"; version="0.1.0"; sha256="10mbi4v8dfdc9ngnrrmxpng8fnig5m8nv7799jksbcf6pnj8yv51"; depends=[far gdata glmnet MASS Matrix rARPACK]; }; - CITAN = derive2 { name="CITAN"; version="2015.12-2"; sha256="08h91q7529q04izgqw3ahm4r0zjpwnwyc0vynykvv9fz2fkbk7wb"; depends=[agop DBI hash RGtk2 RSQLite stringi]; }; + CITAN = derive2 { name="CITAN"; version="2021.11-1"; sha256="15dy0n8yms8c01wp38wnn6541a9gq8q7x4sb76ggm9y4bldj6xj3"; depends=[agop DBI hash RSQLite stringi]; }; CIplot = derive2 { name="CIplot"; version="1.0"; sha256="0hx3dn7d8hvsh75747d9046iqriy3bjnchph8xllnvlhkrm4di1f"; depends=[MASS multcomp]; }; CJAMP = derive2 { name="CJAMP"; version="0.1.1"; sha256="0caznbqy5hsp7h0gkdbv966vfpq8z1khvbizi4vpc9mxck1nqc99"; depends=[optimx]; }; CKAT = derive2 { name="CKAT"; version="0.1.0"; sha256="03vxl91z2mhi1h0xgcwhw63mvj56156zgphm16ijdff63pqxaryr"; depends=[CompQuadForm]; }; CKLRT = derive2 { name="CKLRT"; version="0.2.3"; sha256="1d8sg3ncns3fpjaghz1h1z9nfrl31v09xijrzzsias8xjrpi191b"; depends=[MASS mgcv nlme Rcpp RcppEigen]; }; CKMRpop = derive2 { name="CKMRpop"; version="0.1.3"; sha256="0d4sai2h2cfzh4hbg8yh7wqb459j948j3s0m218d3gcippm22jpb"; depends=[dplyr ggforce ggplot2 ggraph igraph magrittr purrr Rcpp readr stringr tibble tidygraph tidyr vroom]; }; - CLA = derive2 { name="CLA"; version="0.96-1"; sha256="1nxzs0y6mid5f2903pxrkqc3rhk7vpax8wm588ddlz6c97y3m8gk"; depends=[]; }; CLME = derive2 { name="CLME"; version="2.0-12"; sha256="161maq22r8wbd6c2dc8b47mh6991vc4iqmjr8g6yqb5gcwca8zhg"; depends=[isotone lme4 MASS nlme openxlsx prettyR shiny stringr]; }; CLONETv2 = derive2 { name="CLONETv2"; version="2.2.1"; sha256="1axkkagydpxdrz7ypw3x7bavaxk34lzj9bsdn1nah9nfr3cdia6h"; depends=[arules dbscan ggplot2 ggrepel sets]; }; CLSOCP = derive2 { name="CLSOCP"; version="1.0"; sha256="0rkwq9rl2ph4h5zwb2i3yphjyzxmh6b6k23a8gcczycx6xdq4yhw"; depends=[Matrix]; }; @@ -710,7 +706,7 @@ in with self; { COUNT = derive2 { name="COUNT"; version="1.3.4"; sha256="02f7779fy0d2bql88x5v9csbxljhnyvl8wb8h83xrmwl7kaxsdpy"; depends=[MASS msme sandwich]; }; COUSCOus = derive2 { name="COUSCOus"; version="1.0.0"; sha256="1ykqi72v8v1b3g9qy6h34dvk5fynzf1rl2mby65p08axmaba5798"; depends=[bio3d matrixcalc]; }; COVID19 = derive2 { name="COVID19"; version="2.3.2"; sha256="0ipsjmvsd2sngwgchv9mbhipxqlsysaa4vmla198bprzj1r6m424"; depends=[dplyr tidyr]; }; - COVIDIBGE = derive2 { name="COVIDIBGE"; version="0.1.6"; sha256="197m617nfkx62g7bxa943bm7w80fgvm668vfplw9vf7njr55v4f4"; depends=[dplyr httr magrittr projmgr RCurl readr readxl survey tibble timeDate]; }; + COVIDIBGE = derive2 { name="COVIDIBGE"; version="0.1.7"; sha256="18b9wxl47qk1mrqa3nkc1krhdawlfw42a4hbd5mh9dcm4ax77bgz"; depends=[dplyr httr magrittr projmgr RCurl readr readxl survey tibble timeDate]; }; CP = derive2 { name="CP"; version="1.6"; sha256="18zblf13riiz3mq3hkvg6vhiwjzpsn6mvgc2p0bqyldy98v4aisd"; depends=[survival]; }; CPAT = derive2 { name="CPAT"; version="0.1.0"; sha256="0zygncwww3cazwmx06bhzq0g41xcqfpw307azdhygc8jmcy6qj71"; depends=[purrr Rcpp RcppArmadillo Rdpack]; }; CPBayes = derive2 { name="CPBayes"; version="1.1.0"; sha256="1kw0r8spqm0s7cb3w5gplw67mhfmcbbf3ligngbary77ghkzirnb"; depends=[forestplot MASS mvtnorm purrr]; }; @@ -841,7 +837,7 @@ in with self; { ClimDown = derive2 { name="ClimDown"; version="1.0.8"; sha256="0qcag9jwvhi9yss55wy5jxabrvym9hljn1fs5gfkzjs5hiwv3gxv"; depends=[abind fields foreach ncdf4 PCICt seas udunits2]; }; ClimInd = derive2 { name="ClimInd"; version="0.1-3"; sha256="0n5kd001nkpks16c3msvn2qvzyrjawa2rqwh8zph2qr5hgpwcpg7"; depends=[chron SPEI weathermetrics]; }; ClimMobTools = derive2 { name="ClimMobTools"; version="0.3.9"; sha256="1mdzsmv0zc6jm5awppy9b1xqg29vy3j9lm2d88d7p6kag47z2n3n"; depends=[climatrends httr jsonlite Matrix PlackettLuce RSpectra]; }; - ClimProjDiags = derive2 { name="ClimProjDiags"; version="0.1.1"; sha256="16ygjdmdh4rys27iskd457gp4s15h48f7zmddi9qgam1klw3vza2"; depends=[climdex_pcic multiApply PCICt plyr]; }; + ClimProjDiags = derive2 { name="ClimProjDiags"; version="0.1.3"; sha256="1grhg0ajf5lfm7pi5mm0hgp0cmln1jwrgkrfb4ci85fpqn96ddji"; depends=[climdex_pcic multiApply PCICt plyr]; }; ClinSigMeasures = derive2 { name="ClinSigMeasures"; version="1.0"; sha256="0fw89a1q92ck32z6w4zn1ldvky6ag1gi7b9bbv10mhmqhq4w3k58"; depends=[]; }; ClinicalTrialSummary = derive2 { name="ClinicalTrialSummary"; version="1.1.1"; sha256="0b5by4sn9yvrvxr9921yqsgp8ma3g1hi2qbp5j9m836db1zjhyla"; depends=[Rcpp]; }; ClinicalUtilityRecal = derive2 { name="ClinicalUtilityRecal"; version="0.1.0"; sha256="17xj9cmdkjrzx7mshka2hlkxh8887sprdqix7fd8jcr9bmc6ad9r"; depends=[caret cowplot ggplot2 lattice nloptr]; }; @@ -895,7 +891,7 @@ in with self; { CommEcol = derive2 { name="CommEcol"; version="1.7.1"; sha256="1s6x4mhcx64qdzmp83x3mzmwyj1biawmdj2y752xpm8gpxfjnbc0"; depends=[adespatial ape betapart gmp picante vegan]; }; CommT = derive2 { name="CommT"; version="0.1.1"; sha256="1kimm8z3k7p5lxsjnkb203js2rqn09grywxs890fab1hhgssgv2r"; depends=[ape ggplot2 gridExtra phangorn reshape]; }; CommonJavaJars = derive2 { name="CommonJavaJars"; version="1.0-6"; sha256="0l1zqygklv1s3xr6pjjrji3wmyqg7258qvgwf9c2qjim8p8y8lsr"; depends=[]; }; - CommonMean_Copula = derive2 { name="CommonMean.Copula"; version="1.0.0"; sha256="0j489hb4vlj3xkdq9vf2qjmcfb8ccff82vsmz63f25ws9pgc2lk2"; depends=[mvtnorm pracma]; }; + CommonMean_Copula = derive2 { name="CommonMean.Copula"; version="1.0.1"; sha256="0d0l4kisglpws5ywdihxhj1zsd0k1g1ns3nrlw07w22y7k98v86b"; depends=[mvtnorm pracma]; }; CommunityCorrelogram = derive2 { name="CommunityCorrelogram"; version="1.0"; sha256="1wkrm5lil595sc4ih3qsf4sgvfipzlav0n7339ixqw9zxm2pg4nj"; depends=[vegan]; }; Comp2ROC = derive2 { name="Comp2ROC"; version="1.1.4"; sha256="06hpbid9z1pzg7k4gqp2zn8l7sm375z32fsn54i27qbl3inp7m2d"; depends=[boot ROCR]; }; CompAREdesign = derive2 { name="CompAREdesign"; version="1.9"; sha256="0jwq56y6h1jfrh0qm4z52wpia157g1yx003aa08mdjdk0xbdc8n5"; depends=[copula ggplot2 numDeriv rootSolve]; }; @@ -916,6 +912,7 @@ in with self; { CompoundEvents = derive2 { name="CompoundEvents"; version="0.1.0"; sha256="03shw3016xc41a6by8pnpqs7mmnhs0qmg5aqd4hlfcy3dv2w9wkf"; depends=[]; }; Compounding = derive2 { name="Compounding"; version="1.0.2"; sha256="1xlb3ylwjv70850agir0mx79kcvs43h0n1sm22zcny3509s2r7lf"; depends=[hypergeo]; }; ConConPiWiFun = derive2 { name="ConConPiWiFun"; version="0.4.6.1"; sha256="1ziy646lbx297kia797xjxa8hyl826x1hiighyjslvnlvrhapx08"; depends=[Rcpp]; }; + ConNEcT = derive2 { name="ConNEcT"; version="0.7.26"; sha256="00hqbixp2pzsbnv51l8imbqxkvb5z78fa6xzx1sw5azxllh8f70l"; depends=[qgraph Rlab]; }; ConR = derive2 { name="ConR"; version="1.3.0"; sha256="1q93x2b7a2jgkybazk24x8gvwvjjvkhi1gy5zx1sc2f4arm73myq"; depends=[doSNOW fields foreach geosphere raster rgdal rgeos rnaturalearth sf snow sp tibble writexl]; }; ConSpline = derive2 { name="ConSpline"; version="1.2"; sha256="16r0v0llj0pri69jqxribp8dpzh6yn6acpq20aaky14fyh3i4q7x"; depends=[coneproj]; }; Conake = derive2 { name="Conake"; version="1.0"; sha256="1rj1rv8r53516jqhwp9xqqwjxh4gx1w47c0bw59f87wiy5pbchpf"; depends=[]; }; @@ -925,8 +922,7 @@ in with self; { ConfIntVariance = derive2 { name="ConfIntVariance"; version="1.0.2"; sha256="0xm3vh3vmf16faa3934100rnrg4rvlqkgjlsqa2smzcvy5vb86z4"; depends=[]; }; ConfigParser = derive2 { name="ConfigParser"; version="1.0.0"; sha256="0jjh6gz5qcqhirzkmg7a4lnf8n3mjly15x2mvbvdpjkk7iv3w9m3"; depends=[ini R6]; }; ConformalSmallest = derive2 { name="ConformalSmallest"; version="1.0"; sha256="0r74hbz0dmz69zsw2vdl858vj27p6f2xcpv1l1il4r52cmshg1h8"; depends=[glmnet MASS mvtnorm quantregForest]; }; - ConfoundedMeta = derive2 { name="ConfoundedMeta"; version="1.3.0"; sha256="17l6dfff2v0a4p022qclrmkzi78ga9adkgxgrgk9imz0n9m9424d"; depends=[ggplot2 metafor]; }; - ConfusionTableR = derive2 { name="ConfusionTableR"; version="1.0.2"; sha256="0b7zkfncb21p24w78phr1xzjjnjrw05yjxjij66ywjlbqmcwlqcz"; depends=[caret dplyr e1071 furrr ggplot2 lattice magrittr mlbench purrr randomForest scales tidyr]; }; + ConfusionTableR = derive2 { name="ConfusionTableR"; version="1.0.3"; sha256="15azzzjlimn4f8xkqhzfp8xf0q7qa9qd0jaiq671ng95dzrg9sjw"; depends=[caret dplyr furrr magrittr purrr tidyr]; }; CongreveLamsdell2016 = derive2 { name="CongreveLamsdell2016"; version="1.0.2"; sha256="0fs0r3k1hvnp241fa0ymq00868skcigizqr68sp3lsmvzsdyxha9"; depends=[Ternary]; }; Conigrave = derive2 { name="Conigrave"; version="0.4.4"; sha256="02nvk5ya9gr06ai8qnjw0xq6hfbrr91b6lx9gq08dbrnmpbmyvqz"; depends=[dplyr ggplot2 miceadds mitools ppcor stringdist stringr]; }; ConjointChecks = derive2 { name="ConjointChecks"; version="0.0.9"; sha256="097mhiz8zjmmkiiapr3zfx7v35xirg57nqp1swd72dixaa23nhr1"; depends=[]; }; @@ -1198,7 +1194,6 @@ in with self; { DemografixeR = derive2 { name="DemografixeR"; version="0.1.1"; sha256="16qd1wbzizvg86bqkk8fvb53g6h30l5v99cjxpnr43qf0r4drz3j"; depends=[httr jsonlite magrittr]; }; DendSer = derive2 { name="DendSer"; version="1.0.1"; sha256="0id6pqx54zjg5bcc7qbxiigx3wyic771xn9n0hbm7yhybz6p3gz9"; depends=[gclus seriation]; }; DendroSync = derive2 { name="DendroSync"; version="0.1.3"; sha256="1q3bn4aqr4gkazx8cpwbwx29paxg8lr6r2fn8h7jjpzpglj51d0m"; depends=[ggplot2 gridExtra nlme]; }; - DengueRT = derive2 { name="DengueRT"; version="1.0.1"; sha256="11qfg4l6y3j8qh4dcsz13xjjj1n0q71c9a3c180nm5lgqv0nwb81"; depends=[drc ggplot2 nlme]; }; DensParcorr = derive2 { name="DensParcorr"; version="1.1"; sha256="1ifkg7cpimf27yhr60rks77r16kmhwa5h10wv7b64sbfncnyzfmj"; depends=[clime gplots]; }; Density_T_HoldOut = derive2 { name="Density.T.HoldOut"; version="2.00"; sha256="0kh5nns1kqyiqqfsgvxhx774i2mf4gcim8fp5jjyq577x4679r31"; depends=[histogram]; }; DepLogo = derive2 { name="DepLogo"; version="1.2"; sha256="13y3akmrj5x1mn1sgha1jryzswg4kqxwswbm3m5z92mcm2zw4r9l"; depends=[]; }; @@ -1277,6 +1272,7 @@ in with self; { DockerParallel = derive2 { name="DockerParallel"; version="1.0.4"; sha256="1fgs2f5czb05fiqxqp00qggni041ml4s3x05h9n4mmka9mwxi34b"; depends=[jsonlite]; }; Dodge = derive2 { name="Dodge"; version="0.9-2"; sha256="0767n6hyspqrv5cgx3ghhai0qffj6haga7s86pv7mq8zvjcxjlzv"; depends=[]; }; Dominance = derive2 { name="Dominance"; version="1.2.0"; sha256="1z2gcs7myf90986gzw9g3914ph5cyg6pq6k53h4z566x883q8maz"; depends=[chron igraph]; }; + DominoDataCapture = derive2 { name="DominoDataCapture"; version="0.1.0"; sha256="1wh5khdqhp0hqr484sfcaxryn6abzyy4skdd8kfwqbw9ppb8gsah"; depends=[lgr rjson uuid]; }; DominoPredictionLogging = derive2 { name="DominoPredictionLogging"; version="0.1.0"; sha256="1qzh8inzqk1s6cw9bsl7hazdf6cbfr11zs22723wl4xs31inp1lg"; depends=[lgr rjson uuid]; }; DoseFinding = derive2 { name="DoseFinding"; version="1.0-2"; sha256="15wpr8wiqjar9hlgcv8y2gjxv6531q3b69jxh2kq10k7bni3rshb"; depends=[lattice mvtnorm]; }; DoubleCone = derive2 { name="DoubleCone"; version="1.1"; sha256="1kbvsj93nn2306s6pgqiiznmlcn2nqsgcxinihl613ivczxhzpqg"; depends=[coneproj MASS Matrix]; }; @@ -1375,13 +1371,14 @@ in with self; { EMSNM = derive2 { name="EMSNM"; version="1.0"; sha256="0rhaadzhq9jfpnwxfqcsb3yz96rqlwkm165k5n5jxzwxpg1rg2n0"; depends=[]; }; EMSS = derive2 { name="EMSS"; version="1.1.0"; sha256="0rvpi1kymvqcls9fp88dir4jwfqk0823km81wxngy0yi1cxg6va5"; depends=[mvtnorm sampleSelection]; }; EMSaov = derive2 { name="EMSaov"; version="2.3"; sha256="1hpvwimhkl7za5s8j9n4a8883vy89jrxrhlh0k3cfprnndh4zz05"; depends=[shiny]; }; - EMT = derive2 { name="EMT"; version="1.1"; sha256="0m3av1x3jcp3hxnzrfb128kch9gy2zlr6wpy96c5c8kgbngndmph"; depends=[]; }; + EMT = derive2 { name="EMT"; version="1.2"; sha256="07c25nw8n6294f7q1axwraqp4x2p5dprgd8f9sldn2w6jslzvvc8"; depends=[]; }; EMVS = derive2 { name="EMVS"; version="1.2.1"; sha256="1aikms2i77hwv6hrk8kn9wrh1v5j5zm918cwdwm5s6cy8fcqf406"; depends=[Rcpp RcppArmadillo]; }; EMbC = derive2 { name="EMbC"; version="2.0.3"; sha256="0ns6jmshblf00n4harhls03q9c6h1wvgvjzn8jvr3kf4gm2iz2jd"; depends=[maptools mnormt RColorBrewer Rcpp RcppArmadillo sp]; }; EMpeaksR = derive2 { name="EMpeaksR"; version="0.1.0"; sha256="0lb5myzv94j0784akni3v3fmd7f42wiycjg7fm1p3rdgsgd1ql7s"; depends=[]; }; ENMTools = derive2 { name="ENMTools"; version="1.0.5"; sha256="1lvvby77j3abf3gmm12091mcgijxcg7vilr2j9q3fi5n87wqhl12"; depends=[dismo ENMeval forcats ggplot2 ggpubr gridExtra knitr lhs magrittr raster rgdal rgeos sp spatstat spatstat_core spatstat_geom]; }; ENMeval = derive2 { name="ENMeval"; version="2.0.1"; sha256="0l0223cgdbdrwv6nsywc5r7xx67l74gczak6qz9mr93hmrh7fyrg"; depends=[dismo doParallel doSNOW dplyr foreach ggplot2 glmnet magrittr maxnet rangeModelMetadata raster testthat tidyr]; }; EPGMr = derive2 { name="EPGMr"; version="1.0.0"; sha256="1ii4lccv4hyydy3sd5l7c22pgx27x3mdml20sfbdj85pmpyab6q9"; depends=[]; }; + EPP = derive2 { name="EPP"; version="0.3.4"; sha256="1a932c8lm9zhxxkmy2w0015n8ka868man8f5idvkb6whlx8lkiqs"; depends=[assertthat clipr cpp11 curl deldir dplyr flexclust httr leaflet leaflet_extras maptools nngeo osrm plyr rgdal rgeos s2 sf sp tibble]; }; EPT = derive2 { name="EPT"; version="0.7.5"; sha256="1llypf8600mk62cqxnwv5fds8ypfx5is2qkpbp4bh70l3s3lvj31"; depends=[]; }; EPX = derive2 { name="EPX"; version="1.0.4"; sha256="0d0qddk4c835gkh4lydaypxzakjz3qw9ai7y35kbaflj08fismc6"; depends=[doParallel doRNG foreach nnet randomForest rngtools]; }; EQL = derive2 { name="EQL"; version="1.0-1"; sha256="0pa33h0f30l352m6ix296l55lvqxdaib666x2dwy9zx0lmk23w8m"; depends=[lattice ttutils]; }; @@ -1506,7 +1503,7 @@ in with self; { ExcessMass = derive2 { name="ExcessMass"; version="1.0"; sha256="1z8l1lja02wxw8l72s3bq6sgjymn5929n123xk6b7ndd52zlfgf5"; depends=[]; }; ExhaustiveSearch = derive2 { name="ExhaustiveSearch"; version="1.0.1"; sha256="1wb3bf1ilml5cilm740rh8ngiybxhxg6h6nzh1rlqd6wgfp17mzh"; depends=[Rcpp RcppArmadillo]; }; ExomeDepth = derive2 { name="ExomeDepth"; version="1.1.15"; sha256="1ljswn8bimzhl7dxy7nb2jmwq9v7vpp4y1jynp8djrjpdx9wnaqi"; depends=[aod Biostrings dplyr GenomicAlignments GenomicRanges IRanges magrittr Rsamtools VGAM]; }; - ExpAnalysis3d = derive2 { name="ExpAnalysis3d"; version="0.1.0"; sha256="0ragi84ms5fws58xm951qk3wczqg5czx7yvif911hmzp5x8d05gk"; depends=[crayon fields magrittr plotly]; }; + ExpAnalysis3d = derive2 { name="ExpAnalysis3d"; version="0.1.1"; sha256="0gch9q19l3lqb35vfq1kcrga9jzqvrxr7d6x9lk7nzb78y735wa2"; depends=[crayon fields magrittr plotly]; }; ExpDE = derive2 { name="ExpDE"; version="0.1.4"; sha256="0yjsap92dd1sb23fhw69i0ddk3lyj5f4kwp9rvz4k0vxry10hx7g"; depends=[assertthat]; }; ExpDes = derive2 { name="ExpDes"; version="1.2.2"; sha256="145x7zzhgs7rqbamsfwcxlhppxmy9l6v4a1wximac8qgp7i0wdpi"; depends=[stargazer]; }; ExpDes_pt = derive2 { name="ExpDes.pt"; version="1.2.2"; sha256="05s7j3afs97x0k4w9rsjic1519ilzri250x5rl6l6smqivjaplci"; depends=[stargazer]; }; @@ -1633,7 +1630,7 @@ in with self; { FastLZeroSpikeInference = derive2 { name="FastLZeroSpikeInference"; version="2018.12.10"; sha256="0ybpmns7bc1j5xzqjl7734grihmvvpa3h52gixv3h70l0r89d8ys"; depends=[]; }; FastPCS = derive2 { name="FastPCS"; version="0.1.3"; sha256="152fy5hq675n1mjdsi31a77rmi3vylvvbfgywrh62chy5xa1bf34"; depends=[matrixStats Rcpp RcppEigen]; }; FastRCS = derive2 { name="FastRCS"; version="0.0.8"; sha256="11kqd8aii9sy65m5inxiqggyajb41iy6w92zp5wggx7pbg9m6lmy"; depends=[matrixStats Rcpp RcppEigen]; }; - FastRWeb = derive2 { name="FastRWeb"; version="1.1-3"; sha256="1913pyjzxw8kw5hbr8mfwk2mjjfz7cyl6sh71z6cc0jl0af3p1kn"; depends=[base64enc Cairo]; }; + FastRWeb = derive2 { name="FastRWeb"; version="1.2-0"; sha256="13w09ic38vzdyyhcdd18as443nbhgbw4baydrlbl7nai0llsk9w9"; depends=[base64enc Cairo]; }; FastSF = derive2 { name="FastSF"; version="0.1.1"; sha256="1xajav45h57hchzkvl2pb4mz9xy433lq74jnry0icid8dai5xhwb"; depends=[limSolve Rcpp RcppArmadillo]; }; FatTailsR = derive2 { name="FatTailsR"; version="1.8-0"; sha256="10js4vbg9f4ql2panzwb5vxzzb8qb2hl6xyx7nhindhwncga8q33"; depends=[minpack_lm timeSeries]; }; FateID = derive2 { name="FateID"; version="0.2.1"; sha256="1mlw0ji2zz74ki3rxmfj3brg0iv4nr8rbk052ysxhgvi6mb8968k"; depends=[lle locfit matrixStats pheatmap princurve randomForest RColorBrewer Rtsne som umap]; }; @@ -1966,7 +1963,7 @@ in with self; { GiniDistance = derive2 { name="GiniDistance"; version="0.1.0"; sha256="0jq1dwpsvh3k25lawvzf9ij72jsspzyqsbnrphz8aqwi1dkm3851"; depends=[energy randomForest Rcpp RcppArmadillo readxl]; }; GiniWegNeg = derive2 { name="GiniWegNeg"; version="1.0.1"; sha256="1wqwjalsyp55si839cil6na3khigm0mwn6qkg0kjylq10pabfk2a"; depends=[]; }; GlarmaVarSel = derive2 { name="GlarmaVarSel"; version="1.0"; sha256="080v2qckihhacclxi2zscslbwbc6179pc7g02lyqaicf9wrsr8ff"; depends=[ggplot2 glmnet Matrix]; }; - GlmSimulatoR = derive2 { name="GlmSimulatoR"; version="0.2.4"; sha256="1f24wkqxpdh4rfdhc4xh5jzbczqaib5nkvq4a6gx9wzw1ssdhpnd"; depends=[assertthat cplm dplyr ggplot2 magrittr MASS purrr statmod stringr tweedie]; }; + GlmSimulatoR = derive2 { name="GlmSimulatoR"; version="0.2.5"; sha256="114mhhpv7phvrzvzar4s1a9032iyhcvixjx4h7b5vd1p23m9sayz"; depends=[assertthat cplm dplyr ggplot2 magrittr MASS statmod stringr tweedie]; }; GlobalDeviance = derive2 { name="GlobalDeviance"; version="0.4"; sha256="0s318arq2kmn8fh0rd5hd1h9wmadr9q8yw8ramsjzvdc41bxqq1a"; depends=[snowfall]; }; GlobalFit = derive2 { name="GlobalFit"; version="1.2"; sha256="01s51nxcsl8xxn6khbv5jsvpwblwf0iamvr477a1rraqqqj94zx0"; depends=[sybil]; }; GlobalOptions = derive2 { name="GlobalOptions"; version="0.1.2"; sha256="0gkm77w6db9ajyncy1xdcivplap06a51zi99m009kylccschd2a7"; depends=[]; }; @@ -2219,6 +2216,7 @@ in with self; { INTRIGUE = derive2 { name="INTRIGUE"; version="0.1.0"; sha256="1l1vfl0m4iqniwp4bp1bfjpqhwahg341fpyxhryr0j8lypqaw7si"; depends=[dplyr rlist SQUAREM]; }; IOHanalyzer = derive2 { name="IOHanalyzer"; version="0.1.6.1"; sha256="0iipdksj9bxcf3k2acm6ay1sjk9hcp860kqf7dflvcmf3i271rfc"; depends=[bsplus colorRamps colorspace colourpicker data_table dplyr DT ggplot2 httr kableExtra knitr magrittr markdown plotly RColorBrewer Rcpp reshape2 shiny shinydashboard shinyjs stringi]; }; IOHexperimenter = derive2 { name="IOHexperimenter"; version="0.1.4"; sha256="0aacliznncl488rjsnx02pfj1mchhcyb36v816g959ll38pvc6bk"; depends=[assertthat BH magrittr Rcpp]; }; + IP = derive2 { name="IP"; version="0.1"; sha256="0ranpsacsl2nm8swc3saw6xh6cdsfdyq58jlpki04kk3hsqbr9p0"; depends=[stringi]; }; IPCAPS = derive2 { name="IPCAPS"; version="1.1.8"; sha256="17ifkgjjnvvcc8dp065ng4ad9lr85lcdcb401vi84yy8m2llbypw"; depends=[apcluster expm fpc KRIS LPCM MASS Matrix Rmixmod]; }; IPCWK = derive2 { name="IPCWK"; version="1.0"; sha256="0hah1xl6zli0346jh57rjc5x8vynhaysj0l481rmvznsghv6im23"; depends=[MASS survival]; }; IPDFileCheck = derive2 { name="IPDFileCheck"; version="0.7.2"; sha256="1xz020w2cx83wcadnjsqlpfyir2apj7bsjpka77pwyg2h2fqc76m"; depends=[dplyr eeptools effsize gtsummary hash kableExtra lubridate stringr testthat tidyverse]; }; @@ -2337,7 +2335,6 @@ in with self; { JMI = derive2 { name="JMI"; version="0.1.0"; sha256="05phkwfb9v4g9jixlvbj6br7sbi64zvrgjwfr0v87ijddkxc9si9"; depends=[Rcpp RcppArmadillo]; }; JMbayes = derive2 { name="JMbayes"; version="0.8-85"; sha256="0s11jpzflc2zg60g4ffcw23c2f4zz3mzddrc2cl5y43xl2v304lb"; depends=[doParallel foreach Hmisc jagsUI MASS nlme Rcpp RcppArmadillo rstan shiny survival xtable]; }; JMbayes2 = derive2 { name="JMbayes2"; version="0.1-8"; sha256="16fy3j52xd3d1bjpzrs0qaajiw9fvpdvm19jx0nbwh16npid494f"; depends=[coda ggplot2 GLMMadaptive gridExtra matrixStats nlme Rcpp RcppArmadillo survival]; }; - JMcmprsk = derive2 { name="JMcmprsk"; version="0.9.10"; sha256="1hkylfrr2036vgkxfs98szm3883bmyvvyr0f3a8xygccf3pn28xc"; depends=[dplyr MASS pracma Rcpp reshape2 statmod]; }; JMdesign = derive2 { name="JMdesign"; version="1.1"; sha256="0w5nzhp82g0k7j5704fif16sf95rpckd76jjz9fbd71pp2d80vlh"; depends=[]; }; JOPS = derive2 { name="JOPS"; version="0.1.15"; sha256="01yaw657826vfsfdscv3aqgswb5s2054s755agfxqm7g6sswpa13"; depends=[boot colorspace fds fields ggplot2 MASS rpart SemiPar spam SpATS]; }; JOUSBoost = derive2 { name="JOUSBoost"; version="2.1.0"; sha256="0f3rr7aw20nvmlpqrq3wzgmr55lqdqhk3wphpqq7msgvaf1zrcl7"; depends=[doParallel foreach Rcpp rpart]; }; @@ -2394,7 +2391,6 @@ in with self; { KSEAapp = derive2 { name="KSEAapp"; version="0.99.0"; sha256="1gfgpa2d32y6bzvf4ww70sm7niq34sqmyrhi0phlqxshqq9xviqc"; depends=[gplots]; }; KSPM = derive2 { name="KSPM"; version="0.2.1"; sha256="13fq0d016z6880rr93y918l27fsxd5dxc6gbdnkma5sgsjni5cxh"; depends=[CompQuadForm DEoptim expm]; }; KScorrect = derive2 { name="KScorrect"; version="1.4.0"; sha256="1khvwc610yp3fd4fn0wcgqpzxg9g7sicjjmwvfcahs8qxn3m5vfa"; depends=[doParallel foreach iterators MASS mclust]; }; - KSgeneral = derive2 { name="KSgeneral"; version="1.0.0"; sha256="0pfrhmqgdxa13bjs1jgqkggbjfvwbmx6khkjxcfb96rnf2wccgyc"; depends=[dgof MASS Rcpp]; }; KTensorGraphs = derive2 { name="KTensorGraphs"; version="1.1"; sha256="1szl66ix6c6vb0zzyp404psglx3lk125903zc4za0qfzcic7a9p6"; depends=[]; }; KappaGUI = derive2 { name="KappaGUI"; version="2.0.2"; sha256="0vklny804xpd9r60j4a01j2gak8jizwjw0abf7yvbcalv3zbpb3k"; depends=[irr shiny]; }; KappaV = derive2 { name="KappaV"; version="0.3"; sha256="13mmfb8ijpgvzfj20andqb662950lp9g25k5b26r5ba65p7nhva7"; depends=[maptools PresenceAbsence rgeos sp]; }; @@ -2412,7 +2408,7 @@ in with self; { KnapsackSampling = derive2 { name="KnapsackSampling"; version="0.1.0"; sha256="17yzmd11k1n5iy54vbcvpzvkm8ypbl6n1kfi931wwrrcq9y7hg22"; depends=[lpSolve]; }; KneeArrower = derive2 { name="KneeArrower"; version="1.0.0"; sha256="1blmim4l7375psa9c3wbpksywj5nfbawly4001n6311wcv4dybl5"; depends=[signal]; }; KnockoffScreen = derive2 { name="KnockoffScreen"; version="0.2.0"; sha256="1gc47ahvw9sdjbaxg3xl8r6pw9mkn85wdy6gwlksscnl49krrikg"; depends=[CompQuadForm data_table Matrix seqminer SPAtest]; }; - Knoema = derive2 { name="Knoema"; version="0.1.16"; sha256="0v6w8rrw8nd4l1by5w9xd4hbxp55cma89kljha47ykvmnflsrjsc"; depends=[base64enc digest httr jsonlite lubridate xts zoo]; }; + Knoema = derive2 { name="Knoema"; version="0.1.18"; sha256="0knq1nzpcampx2xc0sx190lkdvr0ipyn0rpyxxjfr16nb4cy5djm"; depends=[base64enc digest httr jsonlite lubridate xts zoo]; }; KnowBR = derive2 { name="KnowBR"; version="2.0"; sha256="0i934gff8ldg0lm5cfcf3ip7abnparaaviq8avs7cbnacs6nw8i1"; depends=[fossil mgcv plotrix sp vegan]; }; KnowGRRF = derive2 { name="KnowGRRF"; version="1.0"; sha256="0nk0baibd184rsg23jx1wg4c2fcaqf8ww7822xrs3w5ym6vwd0rs"; depends=[MASS PRROC randomForest RRF]; }; KoulMde = derive2 { name="KoulMde"; version="3.2.1"; sha256="0yx04my2vwjpi4l35h1i5xwqckca8b72divww39y1frcvia33g08"; depends=[expm Rcpp RcppArmadillo]; }; @@ -2475,7 +2471,8 @@ in with self; { LLSR = derive2 { name="LLSR"; version="0.0.3.1"; sha256="0nci8p3gw35a3ifwrq7r2jih718p2iwmmh3495qnh0fk304y7kbi"; depends=[crayon digest dplyr ggplot2 minpack_lm nleqslv openxlsx rootSolve svDialogs svglite]; }; LMERConvenienceFunctions = derive2 { name="LMERConvenienceFunctions"; version="3.0"; sha256="0jg889qh5a9wdi01yiw6z7kivs9dzh5dcq39f4zifdpqzglhshzb"; depends=[fields LCFdata lme4 Matrix mgcv]; }; LMMELSM = derive2 { name="LMMELSM"; version="0.1.0"; sha256="1wrda19629k7fg3rryk9sf16h1w5915cifv7iiqqg64k8w1vwnaj"; depends=[BH Formula loo MASS nlme Rcpp RcppEigen rstan rstantools StanHeaders]; }; - LMMstar = derive2 { name="LMMstar"; version="0.3.3"; sha256="169pxlga9gnms4hlpv9y65pvl1ldnpc3d0pwry443lby4anx9isj"; depends=[emmeans ggplot2 lava Matrix multcomp nlme numDeriv reshape2 sandwich]; }; + LMMsolver = derive2 { name="LMMsolver"; version="1.0.0"; sha256="0ri89i5q3026ambm1zk24adi0jf22wb9assklwsqzz2kmh54k282"; depends=[agridat ggplot2 maps Matrix Rcpp sp spam]; }; + LMMstar = derive2 { name="LMMstar"; version="0.4.0"; sha256="0l5rjsz3yahhwnnw0xh6cj1i6vk6d0ishbp8i2p8hzxn8f85rswd"; depends=[emmeans ggplot2 lava Matrix multcomp nlme numDeriv reshape2 sandwich]; }; LMest = derive2 { name="LMest"; version="3.0.2"; sha256="0x80cgd54qw1l4wayxwyyccmajn5i227727wlsgm6s4chnpvispz"; depends=[diagram Formula MASS mclust mix MultiLCIRT mvtnorm scatterplot3d]; }; LMfilteR = derive2 { name="LMfilteR"; version="0.1.3"; sha256="0c27154jghfl83n3sn26pr8mjcybrq02glvnjcx8hllrmz4gmnmi"; depends=[MASS]; }; LMoFit = derive2 { name="LMoFit"; version="0.1.6"; sha256="10xiaa5h8c0sq9z70yjs29z8jnjyqgybdv33d6s2100h3n46jd31"; depends=[ggplot2 lmom pracma sf]; }; @@ -2828,6 +2825,7 @@ in with self; { MRsurv = derive2 { name="MRsurv"; version="0.2"; sha256="148myzk6r8whkpv1yv59dmdlr2n8vdwmaww165aw696xfjxwq550"; depends=[mvtnorm survival]; }; MSCMT = derive2 { name="MSCMT"; version="1.3.4"; sha256="1vh0i9nxqiy3qdnb7z7cn5kpp2jahdmaqpnv7q5650pkswhwmfpc"; depends=[ggplot2 lpSolve lpSolveAPI Rdpack Rglpk]; }; MSCquartets = derive2 { name="MSCquartets"; version="1.1.0"; sha256="1rik3ma537qkj63j5v0gcf6g3qi68z49w21z96mm88b7nq15xpjh"; depends=[ape doParallel foreach phangorn RandomFieldsUtils Rdpack zipfR]; }; + MSCsimtester = derive2 { name="MSCsimtester"; version="0.0.9"; sha256="02zlyb3lzi4w4dqnzhdiivqsqrm4z1l4ziy2vs13vxygm2g0mn1k"; depends=[ape kSamples Rdpack]; }; MSEtool = derive2 { name="MSEtool"; version="3.2.0"; sha256="0xlbq5c32dhv610van59w3kdk7vhpsc8g6s8xsv0pjglz7z4j1hv"; depends=[abind dplyr ggplot2 Rcpp RcppArmadillo snowfall]; }; MSG = derive2 { name="MSG"; version="0.8"; sha256="178209p30fmh3c03w8iakz306h2xswcj4ffxg1s9s8md156rbj7s"; depends=[RColorBrewer]; }; MSGARCH = derive2 { name="MSGARCH"; version="2.42"; sha256="1n5fvj6yx8sfi1vizw89410hc0d37w8mpqfsksdv01pgnfdcs11a"; depends=[coda expm fanplot MASS numDeriv Rcpp RcppArmadillo zoo]; }; @@ -2887,7 +2885,7 @@ in with self; { MargCond = derive2 { name="MargCond"; version="1.0.0"; sha256="07qh1lgy8ds11cwlb4rxkl6aiph91zq29sy27b8wwxalycdgjrg8"; depends=[gee lme4 MASS Matrix]; }; MarginalMediation = derive2 { name="MarginalMediation"; version="0.7.0"; sha256="0jwp8rzv0ghir8k7dfmfrq4rvcqf7xww6va16p3jj2nk3r9hiq0x"; depends=[betareg boot cli crayon furniture magrittr purrr rstudioapi stringr tibble]; }; MarketMatching = derive2 { name="MarketMatching"; version="1.2.0"; sha256="075maishssvjrx0jfmxcfiv2rlhnm0c4dnp6ija3bn5z80i6z91m"; depends=[Boom bsts CausalImpact doParallel dplyr dtw foreach ggplot2 iterators reshape2 scales tidyr utf8 zoo]; }; - Markovchart = derive2 { name="Markovchart"; version="2.1.3"; sha256="1ypng3r8342hcl505hrn8irjjh98sdravfrf1nml1sqym72gfzqc"; depends=[doParallel foreach ggplot2 metR optimParallel]; }; + Markovchart = derive2 { name="Markovchart"; version="2.1.4"; sha256="12wbirvz90k6aak3dijn0dq3x8gxz7842n4nrgxkd2d0szysrciq"; depends=[doParallel foreach ggplot2 metR optimParallel]; }; MarkowitzR = derive2 { name="MarkowitzR"; version="1.0.2"; sha256="0p234zs7lvi83fv02mijrhp7hmr5cklddayb61krhx1h2hn4gzb9"; depends=[gtools matrixcalc]; }; MaskJointDensity = derive2 { name="MaskJointDensity"; version="1.0"; sha256="0nxhsz57cw96in0sg5xg7sicv920kcnxr2rikn39y2qk4vrw6r78"; depends=[ks MASS np plyr]; }; Massign = derive2 { name="Massign"; version="1.1.0"; sha256="09i32lsrx40rxrnb9alfipfrkipy4mza5nr4gcpn2a5h86ak9290"; depends=[]; }; @@ -2924,6 +2922,7 @@ in with self; { MedSurvey = derive2 { name="MedSurvey"; version="1.1.1.3.0"; sha256="11lkli2arl5w2aizzd93fb6xsy30000nf3qc08qirrm07rwypaly"; depends=[lavaan Matrix survey]; }; MediaK = derive2 { name="MediaK"; version="1.0"; sha256="19cmxl2wksw9kvjsfn1m4nkr5gpcx6bk0sqrabj1n0dla1l32v2a"; depends=[Rcpp RcppEigen]; }; Mediana = derive2 { name="Mediana"; version="1.0.8"; sha256="0j1ikc2iaxl70134v0gijj2i2g0xgjafvn8rc108r9fhm8rpw564"; depends=[doParallel doRNG foreach MASS mvtnorm survival]; }; + MedianaDesigner = derive2 { name="MedianaDesigner"; version="0.6"; sha256="01xp0zaiyka033kvi7jdqfibvcl6x1fi2i56z73sn8v2mdyks1qn"; depends=[devEMF flextable mvtnorm officer Rcpp RcppEigen RcppNumerical shiny shinydashboard shinyMatrix]; }; MendelianRandomization = derive2 { name="MendelianRandomization"; version="0.5.1"; sha256="1qi5v4m19025zcigl6wxmj3vi6zjlzgsm6cj75kywq2qabrzk2fw"; depends=[ggplot2 glmnet iterpc knitr Matrix plotly quantreg rjson rmarkdown robustbase]; }; Mercator = derive2 { name="Mercator"; version="1.1.1"; sha256="0jg5dm65smq67k35p8acqd5kdsv7py8plaamagbsc84617r0iaik"; depends=[ClassDiscovery cluster dendextend flexmix igraph KernSmooth kohonen Polychrome Rtsne Thresher umap]; }; MetABEL = derive2 { name="MetABEL"; version="0.2-0"; sha256="0rqjv85mgswrbbp8b8ip6cdmz0cvfy9lm5mcr8a7h38rzgx3g3i3"; depends=[]; }; @@ -2993,7 +2992,6 @@ in with self; { MixedPoisson = derive2 { name="MixedPoisson"; version="2.0"; sha256="0g5mpzj0wda6g46q3cg5mm3x4dvpz9gdclzn2m17l62lzny2i10p"; depends=[gaussquad MASS Rmpfr]; }; MixedPsy = derive2 { name="MixedPsy"; version="1.0.0"; sha256="19cgw82jdkcpkca90bab1k5gcb2prlxm634n4m7yx0p0mj736fha"; depends=[beepr boot brglm lme4 Matrix mnormt]; }; MixedTS = derive2 { name="MixedTS"; version="1.0.4"; sha256="0gwcg115idbcm5llgzqsygvqgshq8dywawxkaddsmw4sbbhj4555"; depends=[MASS]; }; - MixfMRI = derive2 { name="MixfMRI"; version="0.1-1"; sha256="0nqsvfr28m510gqwcv0s2b94k42m7m6s7ffsjxn6kxikh5p3y6gz"; depends=[EMCluster fftw MASS Matrix MixSim RColorBrewer]; }; MixtureInf = derive2 { name="MixtureInf"; version="1.1"; sha256="12qcflmrpzh4w5b40xq5qicks6p0cwqpf5k84pwabkjb168afddv"; depends=[quadprog]; }; MixtureMissing = derive2 { name="MixtureMissing"; version="1.0.0"; sha256="1sqpv8ysn0y28x8pbz75lqc066sdbpmfmxzb1q39aa83siysc06q"; depends=[cluster ContaminatedMixt GGally ggplot2 mnormt mvtnorm rootSolve]; }; MixtureRegLTIC = derive2 { name="MixtureRegLTIC"; version="1.0.0"; sha256="052gyk4gqv49fa2rxbxnib29f1vjxiw4q8llkfhsv8kw5pw38699"; depends=[]; }; @@ -3047,6 +3045,7 @@ in with self; { MultNonParam = derive2 { name="MultNonParam"; version="1.3.6"; sha256="034a6yx2z93llkg7m3f20ibajwc2m23i13jqsk3fpgzx6f1dnbfk"; depends=[ICSNP]; }; MultOrdRS = derive2 { name="MultOrdRS"; version="0.1-2"; sha256="0bra4z37njkcgah3a1k6mxcnmxq85188jywhgx3fdb1wnv5ic549"; depends=[Rcpp RcppArmadillo statmod]; }; MultSurvTests = derive2 { name="MultSurvTests"; version="0.2"; sha256="04crh4hbfhl8cr0faawv71lyabyilhxpg6i8sr9ki80982mbzcnd"; depends=[Rcpp RcppArmadillo Rdpack]; }; + MultiATSM = derive2 { name="MultiATSM"; version="0.0.1"; sha256="0p35is4kgpwxhmnmjsmphgy33dbj4f4jmysjmi75dbxbns129lig"; depends=[ggplot2 hablar pracma wrapr zoo]; }; MultiBD = derive2 { name="MultiBD"; version="0.2.0"; sha256="1qjfr8hx8sr5m8370yzi09r8jnh3i6907wzj3v4h83vmjh81db71"; depends=[BH Rcpp RcppParallel]; }; MultiCNVDetect = derive2 { name="MultiCNVDetect"; version="0.1-1"; sha256="0mfisblw3skm4y8phfg4wa0rdchl01wccarsq79hv63y78pfhh13"; depends=[]; }; MultiFit = derive2 { name="MultiFit"; version="1.0.1"; sha256="1hy2xsmdcsn4jwa06ffymhhd4prxjnqw0jxl77sxq8yb1fc2vk64"; depends=[data_table Rcpp RcppArmadillo]; }; @@ -3081,6 +3080,7 @@ in with self; { NAEPirtparams = derive2 { name="NAEPirtparams"; version="1.0.0"; sha256="0qhfmkhi38z27ky3xbkvra5r6lw3kj9p3xrblm9j2657rj9kxc9j"; depends=[]; }; NAEPprimer = derive2 { name="NAEPprimer"; version="1.0.1"; sha256="19p1livdnayfcl88f8r9x1vg30x522q8lgx66pfgwpkxjzvrqa2l"; depends=[]; }; NAM = derive2 { name="NAM"; version="1.7.3"; sha256="12d2yjl0af2ailvwk30fswalx1wzyj500qbrhiczsg1vr4rcqhkh"; depends=[Rcpp]; }; + NAP = derive2 { name="NAP"; version="1.0"; sha256="00ym7pqzksc9263mv98cxzi3d0qg5pbyfwyznl648fdca2fqjlay"; depends=[doParallel foreach]; }; NB = derive2 { name="NB"; version="0.9"; sha256="1gh42z7lp6g09fsfmikxqzyvqp2874cx3a6vr96w43jfwmgi2diq"; depends=[]; }; NB_MClust = derive2 { name="NB.MClust"; version="1.1.1"; sha256="0hzmrszxgx3pylf9pjjwk2ryjhwz7naxxkhcqpnfjv337vv5dg0i"; depends=[MASS]; }; NBAloveR = derive2 { name="NBAloveR"; version="0.1.3.3"; sha256="0k1f14srzks26x5wnhj8mrfwcq7wgbywcklr804lxsh04h4d6pwp"; depends=[dplyr magrittr tidyr]; }; @@ -3116,6 +3116,7 @@ in with self; { NHPoisson = derive2 { name="NHPoisson"; version="3.3"; sha256="1i6n59ckcxk1hwyz97jmnv4yb96ianjma6ka8lpz79ivs41jniad"; depends=[car]; }; NHSDataDictionaRy = derive2 { name="NHSDataDictionaRy"; version="1.2.5"; sha256="17jvyjxc28bmxadvcjhal4shklh24636zw6hrc7p7m71lbcw86aw"; depends=[dplyr httr magrittr purrr rvest stringr tibble xml2]; }; NHSRdatasets = derive2 { name="NHSRdatasets"; version="0.3.0"; sha256="1l4zrprnb3fsb2mibq8749a15xbvhn1g5yajbjf7gls81c8f2r7p"; depends=[tibble]; }; + NHSRplotthedots = derive2 { name="NHSRplotthedots"; version="0.1.0"; sha256="1rqryqaxyb3d6kws8mznsnzv19h8nhn1323vkh9zq59la9r3kiai"; depends=[assertthat crayon dplyr ggplot2 NHSRdatasets rlang scales]; }; NIMAA = derive2 { name="NIMAA"; version="0.1.0"; sha256="0qi99iwvr8362zm4lxq6vbw5l47r5246zvsa9p1y3ragc7s1qahc"; depends=[bipartite bnstruct crayon dplyr fpc ggplot2 igraph mice missMDA networkD3 plotly purrr RColorBrewer scales skimr softImpute tibble tidyr tidytext visNetwork]; }; NIPTeR = derive2 { name="NIPTeR"; version="1.0.2"; sha256="0ll6amqyw33a93xiccihidrnbaqlx1q7kqcd4wks7cvqawd8pgv1"; depends=[Rsamtools S4Vectors sets]; }; NIRStat = derive2 { name="NIRStat"; version="1.1"; sha256="07l4ca7d9q840iy5a80sqafrlv20534jw65wzxs90j2d0jx4acs9"; depends=[ggplot2 gridExtra mgcv]; }; @@ -3176,6 +3177,7 @@ in with self; { NetCluster = derive2 { name="NetCluster"; version="0.2"; sha256="0aby8kfniw07jap795cwk69z83p45q5rap73zp1qbmkm3qcb31g4"; depends=[sna]; }; NetComp = derive2 { name="NetComp"; version="1.6"; sha256="11rxpdihn575diqfvc7yvxhlr2c19fig4v4a5c6jhqyfdsd60fsv"; depends=[gdata]; }; NetData = derive2 { name="NetData"; version="0.3"; sha256="1jf05zwy0c6gmm7kvxlwvai61bz4wpsw7cl0h4i21ipzn1rqxmqj"; depends=[]; }; + NetFACS = derive2 { name="NetFACS"; version="0.2.0"; sha256="0fz2whkhdz48knj31pgsq85n4n9zl52vnjmhg6ky34an3a2q459c"; depends=[arrangements doParallel ggplot2 ggraph igraph picante Rfast rlang]; }; NetIndices = derive2 { name="NetIndices"; version="1.4.4"; sha256="0ydivbri8l8zkxi18ghj9h66915scyhca8i9mcyq4b06mjfigss8"; depends=[MASS]; }; NetLogoR = derive2 { name="NetLogoR"; version="0.3.9"; sha256="035nsxgzh7dg9bjcwqbf5228ph90ff629di4ff3pdvr40jki60f1"; depends=[abind car CircStats data_table Hmisc matrixStats plyr quickPlot raster rgeos sp SpaDES_tools]; }; NetMix = derive2 { name="NetMix"; version="0.2.0"; sha256="097cyk0lf3h4v3ff0icqj7a80yvs06damw1sc4hdqf2f21d6qihh"; depends=[clue gtools igraph lda MASS Matrix poisbinom Rcpp RcppArmadillo]; }; @@ -3219,6 +3221,7 @@ in with self; { NormalBetaPrime = derive2 { name="NormalBetaPrime"; version="2.2"; sha256="03il9c57dbwgw38rzckkk0wkc37z8kfdrb7b4k471gm7mqhsm3m3"; depends=[GIGrvg glmnet HyperbolicDist MASS Matrix pracma pscl truncnorm]; }; NormalGamma = derive2 { name="NormalGamma"; version="1.1"; sha256="0r3hhfscif0sx9v8f450yf119gpvf3ilpb8n3ziy4v4qf2jlcfnk"; depends=[histogram optimx]; }; NormalLaplace = derive2 { name="NormalLaplace"; version="0.3-0"; sha256="0njgjdx2yvvy5jb5zn6zr7jdz5hck5bbkicv15z4ai4ibmckqjmh"; depends=[DistributionUtils GeneralizedHyperbolic]; }; + NormalityAssessment = derive2 { name="NormalityAssessment"; version="0.0.1"; sha256="1syxv75dmwshxh8ahwywyd1jyk3ryhdi5ig22gw1k2kkddy5j49f"; depends=[dplyr DT ggplot2 rio shiny shinyalert shinyBS stringi stringr]; }; NostalgiR = derive2 { name="NostalgiR"; version="1.0.2"; sha256="0rpvwi815sdhaxqpji1y6g0vy8mkn5k6wci0a4jf54pkywwkwrwp"; depends=[txtplot]; }; Nozzle_R1 = derive2 { name="Nozzle.R1"; version="1.1-1"; sha256="05sjip4sz12mwd3jcbvk342p83kdmrd4l2jrh17p18w4l7w4nn0z"; depends=[]; }; Numero = derive2 { name="Numero"; version="1.8.4"; sha256="0kkska60ilk3lqf5w6z21pjldipg4pky0qgzpbsl69ial62z8xsy"; depends=[Rcpp]; }; @@ -3237,7 +3240,7 @@ in with self; { OData = derive2 { name="OData"; version="0.6"; sha256="10r4kfhdabramjmkgc4fl0bljaiqbvc7rq4byas7q8cmji2czw6f"; depends=[RJSONIO XML]; }; ODataQuery = derive2 { name="ODataQuery"; version="0.5.3"; sha256="058j3rc5kh134ndsxn5gck2xh6llrs73cyxpa5z8zkmsw9am22qj"; depends=[httr jsonlite R6 rlang]; }; OECD = derive2 { name="OECD"; version="0.2.4"; sha256="1cxjd5h10ynjzblk5d5crdknk19pn8ik37d8hffvz5iydp7ammqn"; depends=[httr rsdmx xml2]; }; - OEFPIL = derive2 { name="OEFPIL"; version="0.1.0"; sha256="07i33757py898kflvfwl62rjmlywvis9l3c0qjjl8fkl98p3rwxz"; depends=[Deriv ggplot2 MASS matrixcalc minpack_lm plyr]; }; + OEFPIL = derive2 { name="OEFPIL"; version="0.1.1"; sha256="0gnbbz2spaqlqqn7978l15jv7xiqpfrh8k9girrpdqih02x95rfw"; depends=[Deriv ggplot2 MASS matrixcalc minpack_lm plyr]; }; OGI = derive2 { name="OGI"; version="1.0.0"; sha256="0qw55jamkvdf3vfa5c0ygbymbs4d9q15dihiqz691hdfnyjvc2mk"; depends=[lpSolve]; }; OHPL = derive2 { name="OHPL"; version="1.4"; sha256="0svim112khdymdj1bsj8vri6r0zph5312y148mlh5h98rah40i08"; depends=[glmnet mvtnorm pls]; }; OLScurve = derive2 { name="OLScurve"; version="0.2.0"; sha256="1zqapfwgwy9rxnbhmlgplkphw1bdia4cyi9q6iwcppw3rjw75f1n"; depends=[lattice]; }; @@ -3268,6 +3271,7 @@ in with self; { OTclust = derive2 { name="OTclust"; version="1.0.4"; sha256="11mr67zp68wzf1dd6vb3f31g8a430im97sdjsb0w4awqpmjdyyrz"; depends=[class ggplot2 magrittr RColorBrewer Rcpp]; }; OTrecod = derive2 { name="OTrecod"; version="0.1.1"; sha256="0rf50li6pnyi9lkxwlayq3190l85cxfmy3ldx0g6fr32ksfjsgfq"; depends=[dplyr FactoMineR mice missMDA ompr ompr_roi party plyr proxy rdist ROI ROI_plugin_glpk StatMatch vcd]; }; OUwie = derive2 { name="OUwie"; version="2.6"; sha256="0yh0hnlrimfqajl0qixs0ciiwpl9r38w9y1g9bhgvafj190ikb54"; depends=[ape corpcor geiger igraph interp lhs nloptr numDeriv paleotree phangorn phylolm phytools RColorBrewer]; }; + OVtool = derive2 { name="OVtool"; version="1.0.3"; sha256="1ghfbvnfl092g0kikgjghgf0l1y7ihqykssfvvfi6q6pgzl8kz4y"; depends=[Amelia devtools dplyr EnvStats ggplot2 ggrepel glue magrittr metR progress purrr rlang survey tibble tidyselect twang varhandle]; }; OWEA = derive2 { name="OWEA"; version="0.1.1"; sha256="00mx94v3krivsxha6sh13xhn2bdj77g8858vc4r2cy23ab4bg0g7"; depends=[gtools MASS shiny]; }; Oarray = derive2 { name="Oarray"; version="1.4-9"; sha256="04jng89s19rd8lbjm76wm4p4ggkffwnsa5qa60c4lwn2rj89a8a1"; depends=[]; }; OasisR = derive2 { name="OasisR"; version="3.0.2"; sha256="1388ld2nws3ppnkavg8s59q3inqf365c5cf9qvzbj6icmwqs9rdd"; depends=[measurements outliers rgdal rgeos seg spdep]; }; @@ -3295,7 +3299,7 @@ in with self; { OpasnetUtils = derive2 { name="OpasnetUtils"; version="1.3"; sha256="0mmn4dpk1wl8slg55xzhpk7jdwhkrka53rwmrsr73sikkh3mcyfn"; depends=[digest ggplot2 httpRequest igraph plyr RCurl reshape2 rgdal rjson sp triangle xtable]; }; OpenCL = derive2 { name="OpenCL"; version="0.2-2"; sha256="0gxzda615f67nbljancb8kixzdzkjsy8i0345mlnmlr8kqv4qyhw"; depends=[]; }; OpenImageR = derive2 { name="OpenImageR"; version="1.2.0"; sha256="161bic7vjknv0hnf8qkkwqbxjcb9mhg62kp7dqrxxrgmgcvazb6g"; depends=[jpeg png R6 Rcpp RcppArmadillo shiny tiff]; }; - OpenLand = derive2 { name="OpenLand"; version="1.0.1"; sha256="1wa7hkfwvzzj9lm07hdajwf6g8ys3g2ff8vqva3gqwqa9j1fam9n"; depends=[circlize dplyr ggplot2 gridExtra networkD3 raster tidyr]; }; + OpenLand = derive2 { name="OpenLand"; version="1.0.2"; sha256="02d1dflcbjvm9hgvsm5gpc3s0n0njf4w3224yqk9nc0i49nw01fi"; depends=[circlize dplyr ggplot2 gridExtra networkD3 raster tidyr]; }; OpenML = derive2 { name="OpenML"; version="1.10"; sha256="132swv22ymm0wxq8y65y2niq8chmga1mnl1lgn6m3cgljvwad47r"; depends=[backports BBmisc checkmate curl data_table digest httr jsonlite memoise stringi XML]; }; OpenMx = derive2 { name="OpenMx"; version="2.19.8"; sha256="0q37mwxqhgdi05rwdfwfapgazfp541xsvw3yskf21lv11y2yjjyb"; depends=[BH digest lifecycle MASS Matrix Rcpp RcppEigen RcppParallel rpf StanHeaders]; }; OpenRepGrid = derive2 { name="OpenRepGrid"; version="0.1.12"; sha256="02p9b2y99z9yrrm2pl86p0yqwah0yjic2wdcd4k0mhccimmmkaip"; depends=[abind colorspace GPArotation openxlsx plyr psych pvclust rgl stringr XML]; }; @@ -3406,8 +3410,8 @@ in with self; { PINSPlus = derive2 { name="PINSPlus"; version="2.0.5"; sha256="1j44ha8saszw0faxkp2887hhvba9i0m8pcq6bf76190924fq305g"; depends=[cluster doParallel entropy FNN foreach irlba matrixStats mclust Rcpp RcppArmadillo RcppParallel]; }; PIPS = derive2 { name="PIPS"; version="1.0.1"; sha256="1c5v3s6xys9p1q32k6mpsffhi9gwsq951rh12hs76dmak862yspc"; depends=[]; }; PK = derive2 { name="PK"; version="1.3-5"; sha256="1wzz2qv6h6nc2hcsg4098951i608xbbhc9f9ngamfigh5sbmzbh6"; depends=[]; }; - PKI = derive2 { name="PKI"; version="0.1-8"; sha256="0qk75ml1xpai8hbh9d73rb0w0gwd559dr62ak8kj8q2ppw5vsfa5"; depends=[base64enc]; }; - PKLMtest = derive2 { name="PKLMtest"; version="1.0.0"; sha256="0qy0v6jakhczid1bc5d2w52xq0ly770icpn4b8v22wkpn8dvgbd1"; depends=[ranger]; }; + PKI = derive2 { name="PKI"; version="0.1-9"; sha256="1j8zwjp59bvm1f6cid232n242afjg23q1s438dbzz9wsyc2hx7y6"; depends=[base64enc]; }; + PKLMtest = derive2 { name="PKLMtest"; version="1.0.1"; sha256="0i1kxczlhn95jw1w7vw87svqhpq9j6xi4fhy974yjx9xhax171hq"; depends=[ranger]; }; PKNCA = derive2 { name="PKNCA"; version="0.9.5"; sha256="0grz5akbpb6i2dg8s9v34qr1zw1r8pczqw2amm6ihi8bxr799223"; depends=[digest dplyr nlme purrr rlang tibble tidyr]; }; PKPDmodels = derive2 { name="PKPDmodels"; version="0.3.2"; sha256="1h893civ77ahbgjnc6kq3l7rszmqmx9dlxwavldigpq3r79vd86k"; depends=[]; }; PKconverter = derive2 { name="PKconverter"; version="1.5"; sha256="1zk2sjrjhq7n2k2p29r2qc6qdghr3riyjvvawz0g74lidg7hm1ly"; depends=[shiny shinydashboard shinythemes]; }; @@ -3484,7 +3488,7 @@ in with self; { PSweight = derive2 { name="PSweight"; version="1.1.5"; sha256="06vn5xv7s80pb88vhwfgbff6jly9p0fpa81p48vijjff2gg6d6nh"; depends=[gbm ggplot2 MASS nnet numDeriv SuperLearner]; }; PTAk = derive2 { name="PTAk"; version="1.4-0"; sha256="0hm1xij32wgirj7k7qv162zl5r7aj1iyyhpnlbm9wx1mbw72ccbc"; depends=[tensor]; }; PTE = derive2 { name="PTE"; version="1.7"; sha256="1azkrij4kfmvp03lnzm88gwgvz8g54jq94j0qg8ynxvyjzrppc98"; depends=[doParallel foreach survival]; }; - PTXQC = derive2 { name="PTXQC"; version="1.0.11"; sha256="15qgmirj9hf4fxxg1arg2sx6fff5rfdszln6rbmidj104biggjpg"; depends=[data_table ggdendro ggplot2 gtable jsonlite kableExtra knitr ontologyIndex plyr R6 R6P RColorBrewer reshape2 rmarkdown seqinr UpSetR xml2 yaml]; }; + PTXQC = derive2 { name="PTXQC"; version="1.0.12"; sha256="0k9qvaf2dxfy2lcqnw0zyi17l682rma4c4hhh56m4bycwl2prmv2"; depends=[data_table ggdendro ggplot2 gtable jsonlite kableExtra knitr ontologyIndex plyr R6 R6P RColorBrewer reshape2 rmarkdown seqinr UpSetR xml2 yaml]; }; PTwins = derive2 { name="PTwins"; version="0.1.1"; sha256="166mc7w52n9d3n72h5jvvhbki87prkils3yigdf57dn9pyixrd66"; depends=[]; }; PUPAIM = derive2 { name="PUPAIM"; version="0.2.0"; sha256="1ky6f4yhm3hjrfxwk8vfalzzjgkq1922my26w457q8nfng7f2m53"; depends=[Metrics minpack_lm nls2]; }; PUlasso = derive2 { name="PUlasso"; version="3.2.4"; sha256="0mcmya0a5wzmssq05vpmkx9icfrq49kc0dc9ri3d9kx4w0sabffh"; depends=[doParallel foreach ggplot2 Matrix Rcpp RcppEigen]; }; @@ -3635,7 +3639,7 @@ in with self; { PowerNormal = derive2 { name="PowerNormal"; version="1.2.0"; sha256="1kryqcjvgwk0l4z3gqxdiz47mha3jw5583jlb9z7ml6v7cam06sm"; depends=[]; }; PowerTOST = derive2 { name="PowerTOST"; version="1.5-3"; sha256="0473vm267hsq7s8ggm4m01jig067qcpm30cza0j1kx9cw6ghq68d"; depends=[cubature mvtnorm TeachingDemos]; }; PowerUpR = derive2 { name="PowerUpR"; version="1.1.0"; sha256="0bnkngdqhzhsbkzp4cxhgm8rzn83q4vm3fj2gkp7z4qznp37lh3j"; depends=[]; }; - PracTools = derive2 { name="PracTools"; version="1.2.2"; sha256="08s8pm55814w6mjz3q4n1bcxccmjypb5qiws5g8pcafl6dj7z0wh"; depends=[]; }; + PracTools = derive2 { name="PracTools"; version="1.2.3"; sha256="07lb57xkiym6xr3d2krbg3zx8i0b2rhvc2mgflc3asx2qm2p4hfr"; depends=[]; }; PreKnitPostHTMLRender = derive2 { name="PreKnitPostHTMLRender"; version="0.1.0"; sha256="1749cd734f4bf0n4068s2m617k6as8h9bwp44mm3la2xy3vjf5g1"; depends=[knitr rmarkdown XML]; }; PreProcess = derive2 { name="PreProcess"; version="3.1.7"; sha256="1fxzkmrj76mc94xdj7a0nq450021i1jxkigmh5jhrmamkp5581jf"; depends=[oompaBase]; }; PreProcessing = derive2 { name="PreProcessing"; version="0.1.0"; sha256="08wrdg3q7r8h7lqn3yppl3qqlhnaak81vd9ymqlkzw92981rxxzx"; depends=[ggplot2]; }; @@ -3671,7 +3675,7 @@ in with self; { ProfessR = derive2 { name="ProfessR"; version="2.4-1"; sha256="1wsbx0dsygc1ipzhgs1pd0lhdb0qvp4ydqzwarn6zv27rzf4p3bd"; depends=[RPMG]; }; ProfileLikelihood = derive2 { name="ProfileLikelihood"; version="1.1"; sha256="16cdp1nimhg1sd2x0qbffm7clgk54p0838y688z8lnsrjaggmb0x"; depends=[MASS nlme]; }; ProfoundData = derive2 { name="ProfoundData"; version="0.2.1"; sha256="1zqg821pv3i5nf76s7yppnmy13y14pj0l7rjhk50wlxrxdb53ibz"; depends=[DBI RNetCDF RSQLite settings sqldf zoo]; }; - ProjectManagement = derive2 { name="ProjectManagement"; version="1.4.0"; sha256="1na2mydnkhwij8jc0c98241bsskwf5jdqjayw3rqrmnlsyppla9k"; depends=[GameTheory igraph kappalab lpSolveAPI plotly triangle]; }; + ProjectManagement = derive2 { name="ProjectManagement"; version="1.4.3"; sha256="017f2rp3jnss65jn9pi0fg69frp23h2z127zrxa5wap3wdw5b49i"; depends=[GameTheory igraph kappalab lpSolveAPI plotly triangle]; }; ProjectTemplate = derive2 { name="ProjectTemplate"; version="0.10.2"; sha256="0r1af5h24nbgr39njchnqd54cw7cyzsw8k1qind8h5af491wmq0h"; depends=[digest tibble]; }; ProjectionBasedClustering = derive2 { name="ProjectionBasedClustering"; version="1.1.6"; sha256="0b2bljw5gslkw6jkajnk3jsx1kgi7bk9vrnivgkaxq76qi8bgsr9"; depends=[deldir GeneralizedUmatrix geometry ggplot2 plotly Rcpp shiny shinyjs shinythemes vegan]; }; ProliferativeIndex = derive2 { name="ProliferativeIndex"; version="1.0.1"; sha256="03ipsbs8pfwr8wsx7j2y9c67ic4qcady7xpa47l8dr14ff63cfk7"; depends=[]; }; @@ -3717,6 +3721,7 @@ in with self; { QGameTheory = derive2 { name="QGameTheory"; version="0.1.2"; sha256="0h3qkb0zg6km3s89bjnv9503hgcng4wfywfy1x5dsbj5azs9hs5w"; depends=[dplyr R_utils RColorBrewer]; }; QGglmm = derive2 { name="QGglmm"; version="0.7.4"; sha256="0ghvicz4ia1180byj28lmg49889hqhb94g1jrkhm6hnzgqbjnfmd"; depends=[cubature]; }; QHOT = derive2 { name="QHOT"; version="0.1.0"; sha256="02z0n2jawd6m7bvyvpcy0j13p1c0zm036g62n56xva18qnq5c9lb"; depends=[]; }; + QHScrnomo = derive2 { name="QHScrnomo"; version="2.2.0"; sha256="1g7gx1mhvqnldqwi9dx5f7nxqrra9mgfn5rq467f1nhlv6m2kzn6"; depends=[cmprsk Hmisc rms]; }; QLearning = derive2 { name="QLearning"; version="0.1.1"; sha256="1bx77yxsnzh0ny3ghala5fw54lxzrxqk9s32qk3dzvfbyp4paggn"; depends=[]; }; QPmin = derive2 { name="QPmin"; version="0.5-1"; sha256="1hfvbi2qfynnkg2pmr7qsw75bmijwglnxchbzxcbikm5yw3sd2mz"; depends=[Matrix]; }; QQperm = derive2 { name="QQperm"; version="1.0.1"; sha256="06xhv54zgnx8i22j23a0dqxhh7my416idpkkwq93qd1rdzgamzc8"; depends=[]; }; @@ -3733,7 +3738,6 @@ in with self; { QTLRel = derive2 { name="QTLRel"; version="1.6"; sha256="1198qrrl7samm4jzliy5i8wfvladz6wpm48l1g2x6ackm1asiw75"; depends=[gdata lattice]; }; QTOCen = derive2 { name="QTOCen"; version="0.1.1"; sha256="0wlbxk1rd56k02jf3pfzbx6xx5mmf6sb7gvds0067cvb7m42ghcr"; depends=[MatrixModels quantreg Rdpack rgenoud survival]; }; QUALYPSO = derive2 { name="QUALYPSO"; version="1.2"; sha256="0hp99hhlv7rijn34ncshpvbnmhbx3f5km7bzr0z7yr7l3j1vx3sc"; depends=[doParallel expm foreach MASS Rfast]; }; - QZ = derive2 { name="QZ"; version="0.2-1"; sha256="1xivasa5dppm9z02ki6ciqxj0ybxch41w1xszl9zqrf755b6f6xw"; depends=[Matrix]; }; Qapprox = derive2 { name="Qapprox"; version="0.2.0"; sha256="0mv3xfy847lqh95mpccjiw5jjbml7dwrna7i16532sdqcxaq4m02"; depends=[]; }; Qtools = derive2 { name="Qtools"; version="1.5.5"; sha256="0kmd5cd299gjw5qbk8yhlzxcwa3ykrr36zcpk773mykyz57q46hb"; depends=[boot glmx gtools MASS Matrix np numDeriv quantreg Rcpp RcppArmadillo]; }; QuACN = derive2 { name="QuACN"; version="1.8.0"; sha256="1597blp8gqc5djvbgpfzi8wamvy0x50wh5amxj9cy99qa0jlglxi"; depends=[combinat graph igraph RBGL]; }; @@ -3852,7 +3856,7 @@ in with self; { RDSTK = derive2 { name="RDSTK"; version="1.1"; sha256="07vfhsyah8vpvgfxfnmp5py1pxf4vvfzy8jk7zp1x2gl6dz2g7hq"; depends=[plyr RCurl rjson]; }; RDStreeboot = derive2 { name="RDStreeboot"; version="1.0"; sha256="10ry8rna450j389cplvyvgwljxa8lli7licwdin64b1kyzy2cdn7"; depends=[]; }; RDataCanvas = derive2 { name="RDataCanvas"; version="0.1"; sha256="1aw19lmdphxwva5cs3f4fb8hllirzfkk48nqdgrarz32l11y5z5j"; depends=[jsonlite]; }; - RDieHarder = derive2 { name="RDieHarder"; version="0.2.1"; sha256="1lz5qb51r321wxarnzaf37zxg19fcq8blw2qw3kspgbkvx283l0w"; depends=[]; }; + RDieHarder = derive2 { name="RDieHarder"; version="0.2.2"; sha256="1d74h2rx0qwpknn9378a2i2kbl43k6dk0cqhwp82ahrjnimvazm6"; depends=[]; }; RDnp = derive2 { name="RDnp"; version="1.3"; sha256="1a10afwn41c0sd35i2hywg79gyf55nd212rfq5pv5inqdrr7kxym"; depends=[cellWise MASS]; }; RDocumentation = derive2 { name="RDocumentation"; version="0.8.2"; sha256="0qdn3c5xbjyrhk56wfch50xpyyfd4f79hs0v00cqk9iwsnjlwmb5"; depends=[httr proto rjson]; }; RDota2 = derive2 { name="RDota2"; version="0.1.6"; sha256="0fjsgg4dmzw2xwrf8jxq0f2d7f78bf67bl3ms5qcjk9kskfnymag"; depends=[httr jsonlite]; }; @@ -4068,12 +4072,12 @@ in with self; { RRI = derive2 { name="RRI"; version="1.1"; sha256="0msdc5j5vx4snl8r3q5nn0mw2i80jds5pjykhmigcrx6jzg6h6i7"; depends=[Rcpp RcppArmadillo]; }; RRMLRfMC = derive2 { name="RRMLRfMC"; version="0.4.0"; sha256="0y8gs9rirrcjb89jqxr7rrp89pjal7lzcscnh4kmabhih3f2d729"; depends=[nnet]; }; RRNA = derive2 { name="RRNA"; version="1.0"; sha256="14rcqh95ygybci8hb8ays8ikb22g3850s9f3sgx3r4f0ky52dcba"; depends=[]; }; - RRPP = derive2 { name="RRPP"; version="1.1.1"; sha256="1y3j577dxsgalc56p1hhaslc5p7jxxm0pc0gv1yz79p778xdnfhs"; depends=[ape ggplot2 Matrix]; }; + RRPP = derive2 { name="RRPP"; version="1.1.2"; sha256="1h40gql8id8a0skvfnc2vra13g76lfhlhks4h7janjg3p4ykymib"; depends=[ape ggplot2 Matrix]; }; RRRR = derive2 { name="RRRR"; version="1.1.0"; sha256="0h5r668qn8hp4j4zhxhn4b3lqm138n6kc1c7vf95hmbh4ah6wzf7"; depends=[expm ggplot2 magrittr matrixcalc mvtnorm]; }; RRTCS = derive2 { name="RRTCS"; version="0.0.4"; sha256="16v6f5yvfq9l1b4h5mr4y0i2k404vdv354yz4k780w79qib7g39p"; depends=[sampling samplingVarEst]; }; RRate = derive2 { name="RRate"; version="1.0"; sha256="1q3f2gphdf50aijnk5xqfpxcqfd4jq7byb1gpb0vcnaxgi3a9lwm"; depends=[]; }; RRedshiftSQL = derive2 { name="RRedshiftSQL"; version="0.1.2"; sha256="03jbml8d19hcg6achnyc4hcnl5j10yvsx59j80r46zyn0flsnizq"; depends=[DBI RPostgreSQL]; }; - RRphylo = derive2 { name="RRphylo"; version="2.5.8"; sha256="03nknmqp65ialb7xl4gfxb8zfcjhybqfgrkj4p2p1xla1s0gwxb9"; depends=[ape doParallel emmeans foreach geiger phytools]; }; + RRphylo = derive2 { name="RRphylo"; version="2.5.9"; sha256="0w6h1k3jp6kvws7yh0fnsw7xf8yyxk9mxhxi8l9qbhvvrm9dxabr"; depends=[ape doParallel emmeans foreach geiger phytools]; }; RRreg = derive2 { name="RRreg"; version="0.7.3"; sha256="1nk2gg41bdhfnz7plkj4rnzl40sd6jd5z9843kxijp9ymagimwx4"; depends=[doParallel foreach lme4]; }; RSA = derive2 { name="RSA"; version="0.10.4"; sha256="0i0li587i6bjnmz9d1j1dyhpy7bfnq6298wr67fygcxfaszij16b"; depends=[aplpack ggplot2 lattice lavaan plyr RColorBrewer]; }; RSADBE = derive2 { name="RSADBE"; version="1.0"; sha256="1nzpm88rrzavk0n8iflsx8r3s1xcry15n80zqdw6jijjycz10w1q"; depends=[]; }; @@ -4097,8 +4101,8 @@ in with self; { RSSampling = derive2 { name="RSSampling"; version="1.0"; sha256="0p10l7qmksx4ysz1jb84f9nbqzig8wxhwy33yk8hq29nb5i4c9ik"; depends=[LearnBayes]; }; RSarules = derive2 { name="RSarules"; version="1.0"; sha256="0lrql4q45hyhqbix86ixl12mknnjbz3137gx2zkvqpz91bsk145j"; depends=[arules Matrix]; }; RSauceLabs = derive2 { name="RSauceLabs"; version="0.1.6"; sha256="1p7hw6vnlg6w5ggmfpc3q3s6n1fikjkjnxzz97jifiy0zwn5dp9i"; depends=[data_table httr jsonlite whisker xml2]; }; - RScelestial = derive2 { name="RScelestial"; version="1.0.1"; sha256="10d2kxlqy224y6qypr7g3pnbv9bkrj22zi77wg7y646f5bzdz9qd"; depends=[Rcpp]; }; - RSclient = derive2 { name="RSclient"; version="0.7-3"; sha256="07mbw6mcin9ivsg313ycw2pi901x9vjpmi6q7sms1hml4yq50k6h"; depends=[]; }; + RScelestial = derive2 { name="RScelestial"; version="1.0.2"; sha256="0mjh1qx7mj4s1jk2ywq13b09gks0bqla55jl6xl47749xrsl95wn"; depends=[Rcpp]; }; + RSclient = derive2 { name="RSclient"; version="0.7-6"; sha256="0vhj2f7bgjcfbshbprqxqyxv6bxkfzn3gpjp7hqnw72da602igya"; depends=[]; }; RSeed = derive2 { name="RSeed"; version="0.1.60"; sha256="0rvb6w4z5c2wcdgx5w6vv7c8il8d0096pgv3fyvw21ag25z605jc"; depends=[graph RBGL sybil]; }; RSelenium = derive2 { name="RSelenium"; version="1.7.7"; sha256="1xn5fdbzmq7b1f5fc9ls23g177bmnd8bn4p4d8aafr6z3jwkmfir"; depends=[binman caTools httr openssl wdman XML]; }; RSentiment = derive2 { name="RSentiment"; version="2.2.2"; sha256="15d1llzxg1apkwykpb7pic2d5lfj9i9a55hab067wrz2yq5jsyfa"; depends=[NLP openNLP plyr stringr]; }; @@ -4133,11 +4137,11 @@ in with self; { RTriangle = derive2 { name="RTriangle"; version="1.6-0.10"; sha256="07ya95gmv53i2argqwgad6wd4sslql2wl1rkvsmgsvmhsb4wp9hd"; depends=[]; }; RUVIIIC = derive2 { name="RUVIIIC"; version="1.0.19"; sha256="1px87p4nmdgkxwarsqyc91kmwr13dy16c1qqqc86qlwm2w46smf6"; depends=[progress Rcpp RcppEigen RcppProgress RSpectra]; }; RUnit = derive2 { name="RUnit"; version="0.4.32"; sha256="1wc1gwb7yw7phf8b0gkig6c23klya3ax11c6i4s0f049k42r78r3"; depends=[]; }; - RVA = derive2 { name="RVA"; version="0.0.4"; sha256="1j5rdpa4w1k67xzjsja7ysd5j8r3dyvjvigfn7cas4alcdmafnsi"; depends=[circlize clusterProfiler ComplexHeatmap data_table dplyr edgeR ggplot2 ggpubr gridExtra GSEABase GSVAdata haven msigdbr org_Hs_eg_db plotly purrr rlang rWikiPathways stringr tibble tidyr XML]; }; + RVA = derive2 { name="RVA"; version="0.0.5"; sha256="1a0av2vhqnkc4w76q5dhds0p12icmkkxyr1d04rsd83srwkwh4fb"; depends=[circlize clusterProfiler ComplexHeatmap data_table dplyr edgeR ggplot2 ggpubr gridExtra GSEABase GSVAdata haven msigdbr org_Hs_eg_db plotly purrr rlang rWikiPathways stringr tibble tidyr XML]; }; RVAideMemoire = derive2 { name="RVAideMemoire"; version="0.9-80"; sha256="1c25nck6knllcbbvk9yp82l3mpk2gym0axmfla4i3brfvz9lbqn0"; depends=[ade4 boot car FactoMineR lme4 MASS mixOmics nnet pls pspearman vegan]; }; RVCompare = derive2 { name="RVCompare"; version="0.1.5"; sha256="17ralm3xbzgi1ngblwf6pmpaz7c5vwkfinnpwyxvlrwi8mxi554h"; depends=[ggplot2 pracma Rcpp]; }; RVFam = derive2 { name="RVFam"; version="1.1"; sha256="0gw8rgq11zndnqmay6y3y5rmmljvwhxzm2pqa90vs5413dnchq92"; depends=[coxme kinship2 lme4 MASS Matrix survival]; }; - RVIpkg = derive2 { name="RVIpkg"; version="0.2.6"; sha256="1l8jr7295rway21d5qr73d30mb8chbh4h01d2n87ynklhfsf1xdf"; depends=[]; }; + RVIpkg = derive2 { name="RVIpkg"; version="0.2.8"; sha256="0hh3kqzfwbp0qc1v5baixnl3px54dwvljd1r23s8lxlg434pl7fz"; depends=[]; }; RVenn = derive2 { name="RVenn"; version="1.1.0"; sha256="016m00xv59lkwm2is32v5nr4lw5a1ymdnz34r3ffflcv9bfrc6n4"; depends=[ggforce ggplot2 magrittr pheatmap purrr rlang vegan]; }; RVerbalExpressions = derive2 { name="RVerbalExpressions"; version="0.1.0"; sha256="1p9wmpgqwnz95sr8km8y6kqax8fcz6sqg54wfdx44kiqkf1ybdsp"; depends=[magrittr]; }; RVideoPoker = derive2 { name="RVideoPoker"; version="0.3"; sha256="06s4dlw0pw8rcq5b31xxqdpdk396rf27mai2vpvmn585vbm1ib7a"; depends=[pixmap rpanel tkrplot]; }; @@ -4182,7 +4186,7 @@ in with self; { RandPro = derive2 { name="RandPro"; version="0.2.2"; sha256="092mm9gybvcby2n161nldlq8s2ja2bc43jnkln6ss3lr29rmi9b3"; depends=[caret e1071]; }; RandVar = derive2 { name="RandVar"; version="1.2.1"; sha256="17c6bx644n604zpggmwx1z3krgd9v7c88il45cf5yhp7zf7cc718"; depends=[distr distrEx startupmsg]; }; RandomCoefficients = derive2 { name="RandomCoefficients"; version="0.0.2"; sha256="04l0aczrlbkjk0687w2gxs85ia71yy69mgankwkl37ksznh6y81m"; depends=[fourierin ks orthopolynom polynom RCEIM rdetools robustbase sfsmisc snowfall statmod tmvtnorm VGAM]; }; - RandomFields = derive2 { name="RandomFields"; version="3.3.10"; sha256="0jcjb5j70s3xk8nb8hc1jkzg24d41y7h5yhch79g31ch4rvfcbgp"; depends=[RandomFieldsUtils sp]; }; + RandomFields = derive2 { name="RandomFields"; version="3.3.13"; sha256="0j9z7m4i6kc5v6xn6806735srxsqvmf3ghk56sss37577652my6v"; depends=[RandomFieldsUtils sp]; }; RandomFieldsUtils = derive2 { name="RandomFieldsUtils"; version="0.5.6"; sha256="17hwdiq4xx0yn6kali8ydh1i4nnszvyhjp4ksryr0856dihl83pj"; depends=[]; }; RandomForestsGLS = derive2 { name="RandomForestsGLS"; version="0.1.3"; sha256="1xqzpfgs6hdkaf99xgrxc4m5k73vpvkhpgb4bw01rhhay08zzv4g"; depends=[BRISC matrixStats pbapply randomForest]; }; Randomuseragent = derive2 { name="Randomuseragent"; version="0.0.1"; sha256="1ym272z5a2wnprz59db8knszzqglmrdmk77r7cfyzy5jwcqzy4jn"; depends=[]; }; @@ -4274,7 +4278,7 @@ in with self; { RcppAPT = derive2 { name="RcppAPT"; version="0.0.7"; sha256="00p4nciy6rv9plzk13sxfvdsr6m9ackjmg647pha9s8nbhlbdjf4"; depends=[Rcpp]; }; RcppAlgos = derive2 { name="RcppAlgos"; version="2.4.3"; sha256="1vclvkd9gikx9n7cvgbf8j9sahmy0wfrgzb1hcpsdj8l6ymjc91k"; depends=[gmp Rcpp RcppThread]; }; RcppAnnoy = derive2 { name="RcppAnnoy"; version="0.0.19"; sha256="12k8ny981dmky5js8yl6bih5r5mq3w43f2f9admhkwqn0n80kcl9"; depends=[Rcpp]; }; - RcppArmadillo = derive2 { name="RcppArmadillo"; version="0.10.7.0.0"; sha256="1x35xb5yfslsdpaz9msl5p9f7gilnbkhwvq7pbycwasvkp2fma01"; depends=[Rcpp]; }; + RcppArmadillo = derive2 { name="RcppArmadillo"; version="0.10.7.3.0"; sha256="0qk25x8naci76fqcd8jkv8gnba6sj61vkv9yf8498fwff1kvf41p"; depends=[Rcpp]; }; RcppBDT = derive2 { name="RcppBDT"; version="0.2.4"; sha256="11xq2lz4n4gyqk4pz8c3zr5ll8jlh1qlbf9rbqd3q6s3qzphpybd"; depends=[BH Rcpp]; }; RcppBigIntAlgos = derive2 { name="RcppBigIntAlgos"; version="1.0.1"; sha256="157a14kqcf0q3z01mn4w1194k2l39dd4qmqs0i115p8bvkjc6ncd"; depends=[gmp Rcpp RcppThread]; }; RcppCCTZ = derive2 { name="RcppCCTZ"; version="0.2.9"; sha256="1bnagfhx70xmzjddbaf1cpz4hmx3mhym4fg36hr9025yl7n4agvj"; depends=[Rcpp]; }; @@ -4283,6 +4287,7 @@ in with self; { RcppCensSpatial = derive2 { name="RcppCensSpatial"; version="0.1.0"; sha256="0ckyl88b81l58dkk0s40mcanjqaibi106q6jsrak79as93g1dbh1"; depends=[ggplot2 gridExtra MomTrunc mvtnorm Rcpp RcppArmadillo RcppProgress Rdpack roptim tlrmvnmvt]; }; RcppClassic = derive2 { name="RcppClassic"; version="0.9.12"; sha256="0v9v34i1c4dkplavdl14kz1k2rnk4hsaiyv6rkc9403z9isvzzr0"; depends=[Rcpp]; }; RcppClassicExamples = derive2 { name="RcppClassicExamples"; version="0.1.2"; sha256="0dr2104miy7psr73nicfs84652ai0d5liw6wxcwyrx7fmys3p638"; depends=[Rcpp RcppClassic]; }; + RcppClock = derive2 { name="RcppClock"; version="1.0"; sha256="05vkbc9bnp5z8nz0iv5cl5rd0h88a3zzz63dnbnhgiq1rqx4pmy1"; depends=[ggplot2 Rcpp]; }; RcppDE = derive2 { name="RcppDE"; version="0.1.6"; sha256="1i9jj595nqpb16y22z2b8fcf0gq1fg0pbiisbd837p1cyw4nff69"; depends=[Rcpp RcppArmadillo]; }; RcppDL = derive2 { name="RcppDL"; version="0.0.5"; sha256="1gii00bna6k9byaax7gsx42dv1jjnkrp4clbmdq59ybq3vkvw8z2"; depends=[Rcpp]; }; RcppDate = derive2 { name="RcppDate"; version="0.0.3"; sha256="1nwb4fdjxwn0c1ckj1fpsxl2hxk5z3sk3y5giwgdag6nfv7yfplw"; depends=[]; }; @@ -4326,7 +4331,7 @@ in with self; { RcppZiggurat = derive2 { name="RcppZiggurat"; version="0.1.6"; sha256="0wgd1v2p7zajnbrjf3hfi56p3pk3ld6iwkanbb04bjbnlif2ay4w"; depends=[Rcpp RcppGSL]; }; Rcrawler = derive2 { name="Rcrawler"; version="0.1.9-1"; sha256="1m6b1h72h8qjqcg3lzw6im6lpnkxhjg65g9fdjjqay6vy52ynznj"; depends=[callr data_table doParallel foreach httr jsonlite selectr webdriver xml2]; }; Rcriticor = derive2 { name="Rcriticor"; version="2.0"; sha256="1cnmmcdp2g3syrlld1pm7101cbzxh02cpvqvgsj7mp6zxm2k5plv"; depends=[]; }; - Rcsdp = derive2 { name="Rcsdp"; version="0.1.57.1"; sha256="1dya0c0fcwr6ydcamz8m06nnq0b80vg7b22dg5jv3qi1n1fgp4lv"; depends=[]; }; + Rcsdp = derive2 { name="Rcsdp"; version="0.1.57.2"; sha256="07rjqllimd78801v0np56nj1sc98wa0v34azgmjli8ah6z9q82m7"; depends=[]; }; Rcssplot = derive2 { name="Rcssplot"; version="1.0.0"; sha256="0hnzwjwk9zh4zbzy8sa0z6amikvpd9k1p1abd38khr8q8k1k8jiv"; depends=[]; }; Rcurvep = derive2 { name="Rcurvep"; version="1.2.0"; sha256="1j067b98hcwm2ha0yrzbwjm54f4z5yqi04y9jkh9k2avpcpdbqxx"; depends=[boot dplyr ggplot2 magrittr purrr Rdpack rlang stringr tibble tidyr tidyselect]; }; Rd2md = derive2 { name="Rd2md"; version="0.0.5"; sha256="1kqni87jg3avpcir1ls2kkf6qafkkdkcv51d9azsbqmji5168vlf"; depends=[knitr]; }; @@ -4339,7 +4344,7 @@ in with self; { Rdpack = derive2 { name="Rdpack"; version="2.1.2"; sha256="0s51c5fw1ka75b8cxk5bh27h6wcy5169yl93sjlxji2k27n9fj3i"; depends=[rbibutils]; }; Rdroolsjars = derive2 { name="Rdroolsjars"; version="1.0.1"; sha256="1l9bc1bwpj10irr973hzkhr04i1f3g998n8hcl2k2i9kgv1naqmz"; depends=[rJava]; }; Rdrw = derive2 { name="Rdrw"; version="1.0.2"; sha256="1487r8z6h1y0v6fxkp7qfbh7j96hw8gqbb0fc90m4cxwz0hrqrn2"; depends=[mvtnorm]; }; - Rdsdp = derive2 { name="Rdsdp"; version="1.0.5"; sha256="04268fbajm7pgi5mxpghzw0yjwwx1dy9vdi6yhr20q2lmi6xh19w"; depends=[]; }; + Rdsdp = derive2 { name="Rdsdp"; version="1.0.5.1"; sha256="0x5dcgl25i6j2pg6d69rinal0yi8w0jwlfg05bnk9bg9v7i7db67"; depends=[]; }; Rdsm = derive2 { name="Rdsm"; version="2.1.1"; sha256="07fc6c2hv0vvg15va552y54cla1mrqsd75w3zh02vc7yd226l4rj"; depends=[bigmemory]; }; Rdta = derive2 { name="Rdta"; version="1.0.0"; sha256="1zmyh61wrzqwyfjbfcxg41cri7hy9r0jfwnixcvd086y0vxq7fdn"; depends=[MCMCpack mvtnorm Rdpack]; }; Rdtq = derive2 { name="Rdtq"; version="0.1"; sha256="114pyf95nl132014ygn84xi41c2zf1ii2wfgd1acwnnmfzvdw24s"; depends=[Matrix Rcpp]; }; @@ -4413,8 +4418,7 @@ in with self; { Rgbp = derive2 { name="Rgbp"; version="1.1.4"; sha256="1y51sms321sbrl3rgzp5hq4y5mqkrjxsyrq75gkcbwfvlakjcfrg"; depends=[mnormt sn]; }; Rglpk = derive2 { name="Rglpk"; version="0.6-4"; sha256="19mzpyimzq9zqnbi05j79b2di3nzaln8swggs9p8sqdr60qvr3d2"; depends=[slam]; }; RgoogleMaps = derive2 { name="RgoogleMaps"; version="1.4.5.3"; sha256="02v8k0bw70q4qwx4lcdy8p25q7n3ql2ll46lfpqllxa1p26svmfi"; depends=[png sp]; }; - Rhpc = derive2 { name="Rhpc"; version="0.21-247"; sha256="0r4zikqzkcyyvywxq1s8jcq6h559mxilkmzpnl79781hh537jvii"; depends=[]; }; - RhpcBLASctl = derive2 { name="RhpcBLASctl"; version="0.21-247"; sha256="09276fpkj6xa0zpzzdckclj923b0xr0rhfjiiwfli3kyqi2m37v2"; depends=[]; }; + RhpcBLASctl = derive2 { name="RhpcBLASctl"; version="0.21-247.1"; sha256="0scpr6jq25xx7wmqyc380ann4h536ll0g7wblikk25yqvpamzrav"; depends=[]; }; RichR = derive2 { name="RichR"; version="1.0.0"; sha256="0z0ri90jqdmw0vwxd1b4wr9if5cgm1gqpf6g9p1fdvncf4sdi9by"; depends=[magrittr metap plyr reshape2]; }; RidgeFusion = derive2 { name="RidgeFusion"; version="1.0-3"; sha256="10llmrsfpcqrkcbw7zj44kvfy7ywn9rk49n7zplilz8h94zzcmjv"; depends=[mvtnorm]; }; Ridit = derive2 { name="Ridit"; version="1.1"; sha256="02cni6hzf1bsns7vi8vklnhc0pfb5vwqhjnnfnjnnaxpzpsbvdfn"; depends=[]; }; @@ -4455,7 +4459,7 @@ in with self; { Rnmr1D = derive2 { name="Rnmr1D"; version="1.2.5"; sha256="0z97pmkksma225s948r0myd4638cy8vl1x2244w1r6n0cybymnd9"; depends=[base64enc doParallel foreach ggplot2 igraph impute MASS MassSpecWavelet Matrix plotly plyr ptw Rcpp signal speaq XML]; }; Rnumerai = derive2 { name="Rnumerai"; version="2.1.4"; sha256="0zxpim1wgymdhdyl7dcvc16iic57wmn8qvxicps9kgr8wxgic0p8"; depends=[arrow data_table dplyr ggplot2 httr lubridate purrr tidyr]; }; Rnvd3 = derive2 { name="Rnvd3"; version="1.0.0"; sha256="13l5vcbcm88jfsc11ijkvr1s8qk8fflclazs4kl1k2wzpnlr6z6a"; depends=[data_table htmltools htmlwidgets jsonlite lazyeval lubridate viridisLite]; }; - RoBMA = derive2 { name="RoBMA"; version="2.1.0"; sha256="1kjp3kn036k4s3sc9dch4cg9iqql2nymax6hhmzm7zaxiq3bwxrl"; depends=[BayesTools bridgesampling callr coda extraDistr ggplot2 psych Rdpack rjags runjags scales]; }; + RoBMA = derive2 { name="RoBMA"; version="2.1.1"; sha256="0i4pawqsa4iy0xa1sahnbchbrip2cbqklfks29ffjwa511h8g510"; depends=[BayesTools bridgesampling callr coda extraDistr ggplot2 psych Rdpack rjags runjags scales]; }; RobAStBase = derive2 { name="RobAStBase"; version="1.2.1"; sha256="0dn93bcyz9kxbj38sc1wisfa6v0666v9gk6y3zq0ihjkkhkmdwq3"; depends=[distr distrEx distrMod RandVar rrcov startupmsg]; }; RobAStRDA = derive2 { name="RobAStRDA"; version="1.2.0"; sha256="1s84j5in4av9zbbszv8j2rpigrd9ws9h4hz64jw7xagsj3xb49kz"; depends=[]; }; RobExtremes = derive2 { name="RobExtremes"; version="1.2.0"; sha256="150p94f0g75g54qcaq4x45lk4sxiyvv1zs4hxkicf46raybvsv89"; depends=[actuar distr distrEx distrMod evd RandVar RobAStBase RobAStRDA robustbase ROptEst startupmsg]; }; @@ -4509,7 +4513,7 @@ in with self; { Rsagacmd = derive2 { name="Rsagacmd"; version="0.1.1"; sha256="1x9bsl1gn16cld50a8xdzpvb1y0b5ma2jdald91hpsygp7kf25nm"; depends=[foreign processx raster rgdal rlang sf stars stringr terra tibble XML]; }; Rsampling = derive2 { name="Rsampling"; version="0.1.1"; sha256="14rp3j7iaii4rc3jkbijmbgvlagxxqjkz3vvfwwpxix43rsi8zsk"; depends=[]; }; Rsconctdply = derive2 { name="Rsconctdply"; version="0.1.3"; sha256="12xc1laxgivv4szp8341pvhmxnzzzzc2s4jhnqsqrbx71lbd9szg"; depends=[dplyr rjson rsconnect]; }; - Rserve = derive2 { name="Rserve"; version="1.7-3.1"; sha256="16cg0cak9pvd9l35fjy1lsplxr5ncvb4apzg5mish5kff0cyk89v"; depends=[]; }; + Rserve = derive2 { name="Rserve"; version="1.8-9"; sha256="102sirdbiwjnh5rh5njpc7mafvz4c90naxgqccpalama3a0mvmbw"; depends=[]; }; Rsfar = derive2 { name="Rsfar"; version="0.0.1"; sha256="1xskvvvavkdyjhb99qlii9qc0q1m36mxx6g0ybgwbq26lq4ypq7l"; depends=[fda]; }; Rsgf = derive2 { name="Rsgf"; version="1.0.0"; sha256="1d2bk20ixnfkzbimvsj56arf7brgkwlyrs80snfn5cnvmwic0h8i"; depends=[ggplot2 png stringi stringr]; }; RsimMosaic = derive2 { name="RsimMosaic"; version="1.0.3"; sha256="0jlzrs9xxlpazvq3iw8znk0bd00bzlry7bgxsxq7xl23akizj0ji"; depends=[fields jpeg RANN]; }; @@ -4619,6 +4623,7 @@ in with self; { SDD = derive2 { name="SDD"; version="1.2"; sha256="0wzgm1hgjv5s00bpd7j387qbvn5zvyrrd5fr2rgyll4cw9p4sd33"; depends=[Hmisc rgl rpanel sm tseries]; }; SDDE = derive2 { name="SDDE"; version="1.0.1"; sha256="14vql1bypn409w9xcx1jdzff6apiagcz2wng3y24h3mk7yjv9bzy"; depends=[doParallel foreach igraph iterators]; }; SDEFSR = derive2 { name="SDEFSR"; version="0.7.22"; sha256="10rxq2y7a9rbzgl5s5fdh93jm4w5kqbyyflw5xfsdwymjj9p4b7m"; depends=[foreign ggplot2 shiny]; }; + SDLfilter = derive2 { name="SDLfilter"; version="2.1.2"; sha256="17h3s2giczcisvpcf7am5kh3nrh70gn58mlfc0x91d34awbn1z2z"; depends=[data_table dplyr ggmap ggplot2 ggsn gridExtra lubridate maps plotKML plyr pracma raster sp trip]; }; SDMPlay = derive2 { name="SDMPlay"; version="2.0"; sha256="1qdvpa57p4p3949rjmvvvz41a3hm3jb34dnn8s2pi04rzrjkys0f"; depends=[dismo raster]; }; SDMtune = derive2 { name="SDMtune"; version="1.1.5"; sha256="1nfxm1g7kyvn7j7zkjwsn6bi5xz77bjna1dcbak9k8xnk627kxjw"; depends=[dismo gbm ggplot2 jsonlite maxnet nnet progress randomForest raster Rcpp rlang rstudioapi stringr whisker]; }; SDT = derive2 { name="SDT"; version="1.0.0"; sha256="1jwpfd1pnzy9wcl90qv5bgwi19shsw9064dvml9zwbif8yw8dzjj"; depends=[quadprog]; }; @@ -4626,7 +4631,7 @@ in with self; { SDraw = derive2 { name="SDraw"; version="2.1.13"; sha256="1kx8kfga3zspfdgf9vq2lclszrhf3bfwkfhwqri64kn8fdr34jsq"; depends=[covr deldir rgeos sp spsurvey]; }; SE_EQ = derive2 { name="SE.EQ"; version="1.0"; sha256="09fqx2rcqpiv072l6gqgfz9pdhas98q4kkkm7m4y28k13q2gicgl"; depends=[MASS]; }; SEA = derive2 { name="SEA"; version="2.0"; sha256="1pw1509qjjqz63a8biwakdxqgln7kjviacqrjvp1323vf55bi4fs"; depends=[data_table doParallel foreach kolmim KScorrect MASS shiny]; }; - SEAGLE = derive2 { name="SEAGLE"; version="1.0.0"; sha256="0f9sxyrnqy0n4pk38wj9y0y7lw0xb2387wrg095ww0vzg3kirga4"; depends=[CompQuadForm Matrix]; }; + SEAGLE = derive2 { name="SEAGLE"; version="1.0.1"; sha256="1j5wjjw7fl2m4h9brg8dyahf1vmn9wgc7jaajaz6z1xqm6fc0d9k"; depends=[CompQuadForm Matrix]; }; SEAsic = derive2 { name="SEAsic"; version="0.1"; sha256="1mg01sag6n1qldjvmvbasac86s7sbhi4k99kdkav2hdh6n9jg467"; depends=[]; }; SECFISH = derive2 { name="SECFISH"; version="0.1.7"; sha256="0yd9k6anz9g4psg5kh1bhp0lr1i4y7in1m0mxk4qp14nl1zqy4fy"; depends=[ggplot2 Hmisc optimization]; }; SECP = derive2 { name="SECP"; version="0.1-4"; sha256="0a4j0ggrbs0jzcph70hc4f5alln4kdn2mrkp3jbh321a6494kwl1"; depends=[SPSL]; }; @@ -4871,7 +4876,7 @@ in with self; { SequenceSpikeSlab = derive2 { name="SequenceSpikeSlab"; version="0.1.1"; sha256="079qm4klgaml99j4cshy3n54pg7q537zlagib4xd8mswdmqdvll6"; depends=[Rcpp RcppProgress selectiveInference]; }; Sequential = derive2 { name="Sequential"; version="4.1"; sha256="1wl499i18nkxjwv27c030jsxij2wa68c99h2wa445wa5xrhn6kvx"; depends=[boot]; }; SequentialDesign = derive2 { name="SequentialDesign"; version="1.0"; sha256="1gi37pixwbpy7358id1c75rckr352hs8vjs8sk8qgsr97pkm5xdq"; depends=[Sequential]; }; - SetMethods = derive2 { name="SetMethods"; version="2.6"; sha256="1yvn5jcv83cd3z4sd7fws1j298fljzcif6037b65wy6ywrrbb73x"; depends=[admisc betareg fmsb ggplot2 ggrepel QCA scatterplot3d stargazer]; }; + SetMethods = derive2 { name="SetMethods"; version="3.0"; sha256="14hh1rb8bma0cx3v9dmn58mkv6sky7xcnhwxwij5x8hp93a1i9is"; depends=[admisc betareg fmsb ggplot2 ggrepel QCA scatterplot3d stargazer]; }; SetRank = derive2 { name="SetRank"; version="1.1.0"; sha256="0p7vwsw05s5hfw1mfh3fbm9nfzsymnxzrdjin7k21dx7asb618wy"; depends=[data_table igraph XML]; }; SetTest = derive2 { name="SetTest"; version="0.2.0"; sha256="08wc6cbnannmwkncqhpcw6l0y7c1v7z3awk5j7fd853nszfmpbk0"; depends=[]; }; Seurat = derive2 { name="Seurat"; version="4.0.5"; sha256="18svlpfbgs5vdzw2jyg99kj0jacag6dwwhjdg1zpmrh0fm0praxg"; depends=[cluster cowplot fitdistrplus future future_apply ggplot2 ggrepel ggridges httr ica igraph irlba jsonlite KernSmooth leiden lmtest MASS Matrix matrixStats miniUI patchwork pbapply plotly png RANN RColorBrewer Rcpp RcppAnnoy RcppEigen RcppProgress reticulate rlang ROCR Rtsne scales scattermore sctransform SeuratObject shiny spatstat_core spatstat_geom tibble uwot]; }; @@ -5035,7 +5040,7 @@ in with self; { Spillover = derive2 { name="Spillover"; version="0.1.0.1"; sha256="0jwhih0jzd6grd9y967k7j5vwv9sd20xqi2270y1cgl64v21bjzm"; depends=[fastSOM vars zoo]; }; Splinets = derive2 { name="Splinets"; version="1.0.0"; sha256="1fws9svxvn03xgfqmqwr169wgl544zv87yrdi4nl5z32cq5c9yk5"; depends=[]; }; SplitGLM = derive2 { name="SplitGLM"; version="1.0.2"; sha256="0708jz8j44lw6zs5f6w4v9pf7apd22j15g7lszc8kwlm8xsnnkf6"; depends=[Rcpp RcppArmadillo]; }; - SplitKnockoff = derive2 { name="SplitKnockoff"; version="0.8"; sha256="1nmw9igjldq3fx7wahsxf3px8kz946vmii48g52kld651xm2ycaq"; depends=[ggplot2 glmnet latex2exp MASS Matrix mvtnorm RSpectra]; }; + SplitKnockoff = derive2 { name="SplitKnockoff"; version="1.0"; sha256="0mnjrxcd5gq723i9cf62jpijyl879j8lkp808mm860islnqsm1qq"; depends=[ggplot2 glmnet latex2exp MASS Matrix mvtnorm RSpectra]; }; SplitReg = derive2 { name="SplitReg"; version="1.0.2"; sha256="1s012qldrsq8rpfpzf7kyd7631b65zai269x53xcaqn75r5ssh3f"; depends=[Rcpp RcppArmadillo]; }; SplitSoftening = derive2 { name="SplitSoftening"; version="2.1-0"; sha256="1fgcqax81zpknw642fm9dx1f6dpdgbcf3va0m1bhj6kl98yq7dqd"; depends=[]; }; SportsAnalytics = derive2 { name="SportsAnalytics"; version="0.2"; sha256="1vb080ak1mfvr6d0q9i3r8hd547ba80bavjdcri0gclqqcjf1ach"; depends=[]; }; @@ -5128,11 +5133,10 @@ in with self; { SurviMChd = derive2 { name="SurviMChd"; version="0.1.1"; sha256="1sj3i950nmam3r70as85kdx6nd88iidb5jpiz2a5a39i5lb7mgf7"; depends=[dplyr ICBayes icenReg R2jags Rdpack readr rjags rlang survival tidyverse]; }; SvyNom = derive2 { name="SvyNom"; version="1.1"; sha256="1jym2x6nd9a3y7nk5hflqpy54gs67y4sqqspkvkalf5l2cc64did"; depends=[Hmisc rms survey survival]; }; SwarmSVM = derive2 { name="SwarmSVM"; version="0.1-6"; sha256="09xq7jx70qjyhblzh6kc40hdr0636rqqdnbka7m6rawhd8ivp8yz"; depends=[BBmisc checkmate e1071 kernlab LiblineaR Matrix SparseM]; }; - SwimmeR = derive2 { name="SwimmeR"; version="0.12.0"; sha256="18chwlvdk6yiajabqia5wwhmckqrys9fbvynhrpqsmji5471rlfw"; depends=[dplyr magrittr pdftools purrr readr rvest stringr xml2]; }; + SwimmeR = derive2 { name="SwimmeR"; version="0.13.0"; sha256="16vimqdbsj7nb1cv0in6qza00qicajpdcpmzf3lv47wm5kp2iv6n"; depends=[dplyr magrittr pdftools purrr readr rvest stringr xml2]; }; SwissAir = derive2 { name="SwissAir"; version="1.1.5"; sha256="0lh69924vhyilgn562jqn8m7z4dq3xmdj09501sbs7hbxfaiiyly"; depends=[]; }; SyNet = derive2 { name="SyNet"; version="2.0"; sha256="0mb9dscddkvmkf7l3bbcy4dlfmrvvy588vxdqy5dr783bpa5dkiw"; depends=[tkrplot]; }; SyScSelection = derive2 { name="SyScSelection"; version="1.0.2"; sha256="16zx507hlzhdxbh6gzndbgmzpyp6vc59h441l4gv8lx58zi9kyjd"; depends=[pracma]; }; - SymTS = derive2 { name="SymTS"; version="1.0"; sha256="17vhm00zd9yxl6li36bsfkm4rsizjsm93ibrzgqnkl72sqmmlwfi"; depends=[]; }; SymbolicDeterminants = derive2 { name="SymbolicDeterminants"; version="2.0.0"; sha256="0hf9b9g2vgpyqbxgi5rkkls2b8vw1zrwl8lymwvwb6y1vwfl9pym"; depends=[arrangements fs]; }; SyncMove = derive2 { name="SyncMove"; version="0.1-0"; sha256="1jlnsj5v8y5pijfkww7ng7nkwvj93naw29wcxxj130ww5qk7qk1z"; depends=[]; }; SyncRNG = derive2 { name="SyncRNG"; version="1.3.0"; sha256="0sywfmmy6mq6qsxkxjc67665snn1jds01j3h7ni1200igja139g2"; depends=[]; }; @@ -5168,7 +5172,7 @@ in with self; { TDD = derive2 { name="TDD"; version="0.4"; sha256="193y8brybkjsajrbnlx1sdnw1wyyn9rhlm5wvp4aamqhvi8z13vn"; depends=[pracma RSEIS signal]; }; TDMR = derive2 { name="TDMR"; version="2.2"; sha256="19ljgj5iy41m7rrawzkxkln7acydssk8zm05k3sfb483s8zygwiq"; depends=[adabag SPOT testit twiddler]; }; TDPanalysis = derive2 { name="TDPanalysis"; version="1.0"; sha256="0kvbsgwl7b9a3hn4d3snajqmynbajd2d8lc1na0hri2cv8qm8x9h"; depends=[plyr]; }; - TDbook = derive2 { name="TDbook"; version="0.0.3"; sha256="13jx35mzppvlr6yjrg04zxn6qbhzyfzrwjnzkijxhrk9p46acs7j"; depends=[]; }; + TDbook = derive2 { name="TDbook"; version="0.0.4"; sha256="04ljp2rxk959143wri4l5xq4yhby0ld42a0s9z027i1z7qn4072v"; depends=[]; }; TDboost = derive2 { name="TDboost"; version="1.2"; sha256="0sc9vby4892gm5b5h8gbdl4misqvgbkfp8fms53dk83malxkw1zx"; depends=[lattice]; }; TE = derive2 { name="TE"; version="0.3-0"; sha256="15530a5qjlh74c1qji76j25mm4c59gifp34y066f8j21f70rahfs"; depends=[MASS rainbow]; }; TEAM = derive2 { name="TEAM"; version="0.1.0"; sha256="1yj7fw935rr7fh7h2p4ra8d3ynz5c6b30fqzm1djgav1k84wcin2"; depends=[ggplot2 ks plyr]; }; @@ -5318,6 +5322,7 @@ in with self; { TideHarmonics = derive2 { name="TideHarmonics"; version="0.1-1"; sha256="1g1v99gh6mns4l8ipmw7kpalbk07m92ybcqjq7b0wsjmdvs1y67s"; depends=[]; }; TideTables = derive2 { name="TideTables"; version="0.0.3"; sha256="0xfwikz9f58pw1j5vp45wp44lbr8b8ijlac474nzahq46d411afp"; depends=[chron data_table]; }; Tides = derive2 { name="Tides"; version="2.1"; sha256="0da3z010ali83qf8mf1znicqv8vvsa5r93mc40ax60ln2w33nlrm"; depends=[]; }; + TidyConsultant = derive2 { name="TidyConsultant"; version="0.1.0"; sha256="1ipv0nx0xmba62c7qjgadpjsr850d9dl0z5zjkh1rj6kfxdgiis2"; depends=[autostats badger framecleaner pacman presenter tidybins validata]; }; TidyMultiqc = derive2 { name="TidyMultiqc"; version="0.1.0"; sha256="0m2f22glndia57vbr4j7xzr6m8xnwyq3qr624x1wl33a13izfzl8"; depends=[assertthat dplyr HistDat jsonlite magrittr purrr rlang stringr tibble]; }; TileManager = derive2 { name="TileManager"; version="0.4.0"; sha256="0kc3wgk5n8cxg901c19fjfzq7na46jq0x3gy22fi4jccjb0vgv0v"; depends=[APfun raster rgeos sp XML]; }; TimeProjection = derive2 { name="TimeProjection"; version="0.2.0"; sha256="04yr4cg2khkw9n3y3qk0ni1327k4pxm09zz2xg8mpjdvgi4p9yi3"; depends=[lubridate Matrix timeDate]; }; @@ -5426,7 +5431,7 @@ in with self; { UpSetR = derive2 { name="UpSetR"; version="1.4.0"; sha256="007i0njnjjy7vbrxabwav7a1kk2n0hn2mkvqsdzzfk10ckp5y7im"; depends=[ggplot2 gridExtra plyr scales]; }; UsingR = derive2 { name="UsingR"; version="2.0-6"; sha256="1lr8z45r5s7fxrd42rswm6w7s3k5nds244b9d525jb5v4n8w9kpw"; depends=[HistData Hmisc MASS]; }; UtilityFrailtyPH12 = derive2 { name="UtilityFrailtyPH12"; version="1.0"; sha256="06f5gmwwk1r14ab6v5jcxz0pmdph7ffi4y57mjg9byn7pjnibflk"; depends=[bindata mvtnorm Phase123 Rcpp RcppArmadillo]; }; - V8 = derive2 { name="V8"; version="3.4.2"; sha256="1vfj89shfzx7b6papi2y671l8gksng775kilmqzl5gx87i3l61i1"; depends=[curl jsonlite Rcpp]; }; + V8 = derive2 { name="V8"; version="3.5.0"; sha256="0wxsnmy623j0qrhiqws03d49dsspx44vra3amsivh5fmlrhsj3js"; depends=[curl jsonlite Rcpp]; }; VALERIE = derive2 { name="VALERIE"; version="1.1.0"; sha256="15z8234jhh7hv3gijrvy8hap6gdgvm6qll9b00qbji7vyc3dg4pg"; depends=[GenomicAlignments GenomicRanges ggplot2 ggplotify ggpubr IRanges pheatmap plyr Rsamtools scales]; }; VAM = derive2 { name="VAM"; version="1.0.0"; sha256="04lq8i4zwdc9a4n4hvabdyv4a4cmmqbf534cdnnck7jc0dk5rphr"; depends=[MASS Matrix]; }; VAR_etp = derive2 { name="VAR.etp"; version="0.7"; sha256="0py5my3ilhcmz44m15hh0d219l9cz7rda4a9gbmf8wh9cgvvj1s3"; depends=[]; }; @@ -5446,6 +5451,7 @@ in with self; { VDSM = derive2 { name="VDSM"; version="0.1.1"; sha256="09h09av2yydq1vwd77lgfjjk87432sas60905sxkw0mjixf6hq22"; depends=[dplyr ggplot2 gridExtra knitr plyr viridis]; }; VDSPCalibration = derive2 { name="VDSPCalibration"; version="1.0"; sha256="1hrmmhvk3mhd3bdl0msnm5shcj4cjgd3pn1rkfkv8fh4llqvz7w8"; depends=[]; }; VEwaning = derive2 { name="VEwaning"; version="1.1"; sha256="176f0y60pcw29iq6rs636mybbnxq9fhgwhsxaykiijz5d0jhkmbn"; depends=[ggplot2 survival]; }; + VEwaningVariant = derive2 { name="VEwaningVariant"; version="1.1"; sha256="1jchs1ddvdmha7ivxi99mvr4vl7jggpv6mnv7d6xcrfyw3gh1bj1"; depends=[ggplot2 Rcpp RcppArmadillo survival]; }; VFP = derive2 { name="VFP"; version="1.3.1"; sha256="186v8jq9z7jm8yzi21s6gc56hiizq3j1qirifa67jlwwyr48y8s7"; depends=[gnm MASS VCA]; }; VFS = derive2 { name="VFS"; version="1.0.2"; sha256="1b8sl8id2gj4iqkpjzd3giybbix2jvskwsbw1kqj3zqr77hygxwg"; depends=[e1071 nleqslv]; }; VGAM = derive2 { name="VGAM"; version="1.1-5"; sha256="1fx123h4x5awzshv0m4jqbbllrdjfpslb2i8gl9phm1y1wahn69h"; depends=[]; }; @@ -5608,7 +5614,6 @@ in with self; { aLFQ = derive2 { name="aLFQ"; version="1.3.6"; sha256="0kphpvhz36859f5l0k8mbf59g9871mynbs4ybdi0h5nm2cdjy9vx"; depends=[bio3d caret data_table lattice plyr randomForest reshape2 ROCR seqinr]; }; aMNLFA = derive2 { name="aMNLFA"; version="1.0.0"; sha256="1wjv4ka683asj5j4amymgbc56qn136nkyjfbb7szs0gfp1jf1qig"; depends=[devtools dplyr ggplot2 gridExtra MplusAutomation plyr reshape2 stringr]; }; aPCoA = derive2 { name="aPCoA"; version="1.2"; sha256="0b5fqxay918if5pfd6xgbzir5myivc3jar2p2is8azrykrr1v2cr"; depends=[ape car cluster randomcoloR vegan]; }; - aRbs = derive2 { name="aRbs"; version="0.1.3"; sha256="19s4x2w036xllrsarapmp8rvyxcsky82k4h9mfr2rbhdfid6h1f3"; depends=[crayon data_table dlstats dplyr DT ggplot2 lubridate progress purrr rvest shiny shinyBS shinycssloaders shinydashboard stringr xml2]; }; aRchi = derive2 { name="aRchi"; version="1.0.5"; sha256="1sn321d2qh7vvwfbr62lg3c5ggg8df0w0q6mwcg5pr3jqhiif076"; depends=[circular data_table DiceKriging dplyr FNN gtools lidR pkgcond plyr progress rgl stringr]; }; aRpsDCA = derive2 { name="aRpsDCA"; version="1.1.1"; sha256="0ghg43rd6bnv4jp8pkpd1ixp5l6kq5pr0mxq61q24s24g0m3s64p"; depends=[]; }; aRtsy = derive2 { name="aRtsy"; version="0.1.4"; sha256="0b7wg4jhykxra602g49rqx4mppnfjy2iannhi38idlz9h7f3wbl4"; depends=[dplyr e1071 ggplot2 kknn randomForest Rcpp RcppArmadillo]; }; @@ -5634,11 +5639,8 @@ in with self; { abglasso = derive2 { name="abglasso"; version="0.1.1"; sha256="0h8p912l0202wyr5vjsbzw5mr70m56ab39wv833g6c4c3187479y"; depends=[MASS pracma statmod]; }; abind = derive2 { name="abind"; version="1.4-5"; sha256="0b1zd8jbnl6l292cr9rb50m09fy3ylxvzkpgi5lfb1nbzddcwfis"; depends=[]; }; abjutils = derive2 { name="abjutils"; version="0.3.1"; sha256="18mmlkqsrjfclk8islfjdsp8sbw6dpjj5x45kqilxdiss69gg5zd"; depends=[dplyr magrittr purrr rlang rstudioapi stringi stringr tidyr]; }; - abmR = derive2 { name="abmR"; version="1.0.4"; sha256="1sz27ym4lfzsf8413p3zdq51gcn9lp3bbgjgah0wfas4v3yyfsp4"; depends=[geosphere ggplot2 googledrive gstat gtsummary kableExtra purrr raster rgdal rgeos rnaturalearth rnaturalearthdata sf sp swfscMisc table1 tmap]; }; - abn = derive2 { name="abn"; version="2.5-0"; sha256="1fqmhw0mhdl6az1gpg0byvx5snhz1pl3fqikhyfjcjrc9xbsq8yw"; depends=[lme4 nnet Rcpp RcppArmadillo Rgraphviz rjags]; }; abnormality = derive2 { name="abnormality"; version="0.1.0"; sha256="1fzfskl9akl06nliy8hkv2a0pznpj8pwcypg3gj5r2nzvr3kan9v"; depends=[MASS Matrix]; }; abodOutlier = derive2 { name="abodOutlier"; version="0.1"; sha256="1pvhgxmh23br84r0fbmv7g53z2427birdja96a67vqgz18r3fdvj"; depends=[cluster]; }; - abstr = derive2 { name="abstr"; version="0.4.0"; sha256="1alipc1pajjbvs69swxn5xkbjryrmdx5fyrwnfwdrn8l2vkgw10w"; depends=[jsonlite lwgeom magrittr od sf tibble tidyr]; }; abstractr = derive2 { name="abstractr"; version="0.1.0"; sha256="1ymwp7syrynwd4i8aj2x5n8jdi9d96fjzl6jb09n0bnr5fgl7vig"; depends=[colourpicker emojifont ggplot2 gridExtra rintrojs shiny shinythemes]; }; abtest = derive2 { name="abtest"; version="0.2.2"; sha256="1ak0m4jd1grriwg4pn3aqf1468qma6rjn5kqjh8izx7zl29jd07v"; depends=[Matrix mvtnorm plotrix qgam RColorBrewer Rcpp sn truncnorm]; }; academictwitteR = derive2 { name="academictwitteR"; version="0.2.1"; sha256="1xwkzspb1j87i8zy1r7gjg22cb8ay87v3l15nnvapzc9sg0dk1vp"; depends=[dplyr httr jsonlite lubridate magrittr purrr rlang tibble tidyr tidyselect usethis]; }; @@ -5751,6 +5753,7 @@ in with self; { afthd = derive2 { name="afthd"; version="1.1.0"; sha256="0gg2cp3sj28f3pi5rqh737hna3imwarwas01jacm0m2h27587k7y"; depends=[glmnet photobiology R2jags rstpm2 survival]; }; agRee = derive2 { name="agRee"; version="0.5-3"; sha256="1wi8jn14kpsj5z49my6fz8j6zxysddxm8svw86cnzsmnbj6mzq7x"; depends=[coda lme4 miscF R2jags]; }; aggregation = derive2 { name="aggregation"; version="1.0.1"; sha256="0j9g604m2ccc7hcy02539yja9cf3xcbl25gvp838bp4x8w18my46"; depends=[]; }; + aghq = derive2 { name="aghq"; version="0.3.0"; sha256="10v3mfngriqq92zz23vnbp703rgp9fqhjaqrsra1ny6s65ddg67a"; depends=[Matrix mvQuad numDeriv polynom rlang]; }; aglm = derive2 { name="aglm"; version="0.4.0"; sha256="0rcyrzfi3l1k53c9qs1gfrcflnhdnri9sq6py8s6fw4wcn55kf67"; depends=[assertthat glmnet mathjaxr]; }; agop = derive2 { name="agop"; version="0.2-3"; sha256="1z90a07wzn5z4cbafwpfh3l3v1bgq9g89qbdjm51f78zynnb27dk"; depends=[]; }; agriTutorial = derive2 { name="agriTutorial"; version="0.1.5"; sha256="0c0p0bqcrnx34q5brnvgq10wkzahvgyybaz2xfmcghbdvzahd2dx"; depends=[emmeans ggplot2 lattice lmerTest nlme pbkrtest]; }; @@ -5759,7 +5762,6 @@ in with self; { agridat = derive2 { name="agridat"; version="1.18"; sha256="0r3806inanb49snnliq1k2li40f3yl73h37apngfhk0fw2d46fq1"; depends=[]; }; agriwater = derive2 { name="agriwater"; version="1.0.1"; sha256="1mssd0nxj8ayc3b2qcc7qzx93cnwnlxrnhn3rdknxc8iixkf40l8"; depends=[raster rgdal sp]; }; agrmt = derive2 { name="agrmt"; version="1.42.7"; sha256="00vhwlz6vf2p3x51arxngd0vzgw8mb9fi8dq0b2lvqbpqqv6d071"; depends=[]; }; - agroclim = derive2 { name="agroclim"; version="0.1.0"; sha256="16cyqplzmwziqwkicix0sr06zhc0yx615iv3hda0cxbdyf2rllk3"; depends=[abind cowplot easyNCDF ggforce ggplot2 ggpubr gtable multiApply ncdf4 plyr raster reshape sp zoo]; }; agrostab = derive2 { name="agrostab"; version="0.1.0"; sha256="0mcskv3144j594wqljzn5pwbhkxh6sb76b1c2wabzjvi61zrapiv"; depends=[dplyr ggplot2 rlang]; }; agsemisc = derive2 { name="agsemisc"; version="1.3-1"; sha256="1905q35jgjhghlawql43yh296kbpysp927x3hj750yshz5zayzyr"; depends=[lattice MASS]; }; agtboost = derive2 { name="agtboost"; version="0.9.1"; sha256="01gydh7rlsgv759y3nahm9qi8pd24x37rpzv1frwzrr5jfbajqdl"; depends=[Rcpp RcppEigen]; }; @@ -5787,12 +5789,12 @@ in with self; { ajv = derive2 { name="ajv"; version="1.0.0"; sha256="1qd5ncb7rdnnvqfknsvq9nrpxrh0zv3jyh4b91dcvfvhp262vfrm"; depends=[RJSONIO V8 yaml]; }; akc = derive2 { name="akc"; version="0.9.5"; sha256="0mjqz5csckdnl9wb2lypcj907qbkvppwbzvmfcl1a06431pj8zgv"; depends=[data_table dplyr ggforce ggplot2 ggraph ggwordcloud igraph magrittr rlang stringr textstem tibble tidygraph tidytext widyr]; }; akiFlagger = derive2 { name="akiFlagger"; version="0.3.0"; sha256="08z5jvigzvl3af17dd8l6zil0s694i22x0a7xvb3n4fvg6fargz4"; depends=[data_table dplyr shiny zoo]; }; - akima = derive2 { name="akima"; version="0.6-2.2"; sha256="0hl7ddpl6i40cmrjngs936cxlqrqsa5whbrw6fvni3pphbzwkvyy"; depends=[sp]; }; + akima = derive2 { name="akima"; version="0.6-2.3"; sha256="0hvaa2n1r82fd60ksx4n4ia02fbm67fqdijfy2b2xywq8861i6rv"; depends=[sp]; }; akmbiclust = derive2 { name="akmbiclust"; version="0.1.0"; sha256="19dj12vlry6f3agzrnshx2c4rpa2h7dlx2138r49jjy9sm48pyfw"; depends=[]; }; akmeans = derive2 { name="akmeans"; version="1.1"; sha256="1nqbxbx583n0h2zmpy002rlmr6j86j6bg76xj5c69brrh59dpyw1"; depends=[]; }; akmedoids = derive2 { name="akmedoids"; version="1.3.0"; sha256="19d9fh1cygn04riwc7y7lzdncyxki9rzikf9f5m96vp0y687z2ka"; depends=[clusterCrit dplyr ggplot2 Hmisc kml signal]; }; alabama = derive2 { name="alabama"; version="2015.3-1"; sha256="0mlgk929gdismikwx4k2ndqq57nnqj7mlgvd3479b214hksgq036"; depends=[numDeriv]; }; - alakazam = derive2 { name="alakazam"; version="1.1.0"; sha256="0iy3b1w2yx9d5xagbdb2xxl6ydm16mszs5mvx0bw5cfxrcffd680"; depends=[airr ape Biostrings dplyr GenomicAlignments ggplot2 igraph IRanges lazyeval Matrix progress Rcpp readr rlang scales seqinr stringi tibble tidyr]; }; + alakazam = derive2 { name="alakazam"; version="1.2.0"; sha256="0lqvfamx9lqcg6ig70zzxan2zchab68g6qxa734d6dsdgyfkiwnm"; depends=[airr ape Biostrings dplyr GenomicAlignments ggplot2 igraph IRanges Matrix progress Rcpp readr rlang scales seqinr stringi tibble tidyr]; }; albatross = derive2 { name="albatross"; version="0.3-2"; sha256="1rwaw7809lzdv89lfq9li8jdb7pbb0wjqyiidxl7pxg7d5nxj06h"; depends=[lattice Matrix multiway pracma]; }; albopictus = derive2 { name="albopictus"; version="0.5"; sha256="0kw1agm9jqi9wl5zbx8bryngy751g3sih36rgbrx0m2170cy42d9"; depends=[]; }; ald = derive2 { name="ald"; version="1.3.1"; sha256="12nf9vakayw24clrg56fh9x85kg277iricbs8ymahkjqjnc1p3cz"; depends=[]; }; @@ -6116,7 +6118,6 @@ in with self; { azuremlsdk = derive2 { name="azuremlsdk"; version="1.10.0"; sha256="0s64kjrmcdnjdwh5mdm5vxgvrl9ghvfv6bair7qfzz32jlab99m0"; depends=[DT ggplot2 htmltools plyr reticulate rstudioapi servr shiny shinycssloaders]; }; b6e6rl = derive2 { name="b6e6rl"; version="1.1"; sha256="17scdskn677vaxx1h2jypqaffvjgczryplg17nr3wigi1x0cxg7a"; depends=[]; }; bPeaks = derive2 { name="bPeaks"; version="1.2"; sha256="1z6jghcmw0lwv17ms7gdp5zzimaawq3ahbwkxa4062g373592smd"; depends=[]; }; - bRacatus = derive2 { name="bRacatus"; version="1.0.5"; sha256="1ir5q8q9kssbcakfi0lpixxgcmcla2p3j8a290p5h3zddbp41az6"; depends=[data_table geojsonio jsonlite maptools plotfunctions raster rgbif rgdal rgeos rworldmap sp]; }; bReeze = derive2 { name="bReeze"; version="0.4-3"; sha256="17nc6qvw9l6sq8knd1mk193md2y3z1jlcjymqzl389yxj8s0i2il"; depends=[lubridate]; }; bSims = derive2 { name="bSims"; version="0.3-0"; sha256="055hqa5w4gaqz9mms9yj85wg0pgl6xa568nbjxm4qc75rsy91qg5"; depends=[deldir intrval MASS mefa4 pbapply]; }; bWGR = derive2 { name="bWGR"; version="1.6.6"; sha256="1m5spafvl5pn0s60vaf8wz7iaibsa7laq7kp8y9xj20pp3f76hvr"; depends=[Rcpp]; }; @@ -6178,7 +6179,7 @@ in with self; { basemaps = derive2 { name="basemaps"; version="0.0.1"; sha256="15fgk5x9n8nfmhclydwaypzqv5dl6s1r9v40ahdnpc50y5p8zjay"; depends=[curl httr magick pbapply raster sf slippymath stars]; }; basetheme = derive2 { name="basetheme"; version="0.1.2"; sha256="0yck4qc7qd406s7kw95xgnfc0pfvzk3ylhkv6mk6l2wbkfm8ldrb"; depends=[]; }; basf = derive2 { name="basf"; version="0.2.0"; sha256="0l3y5p51jic3b8h1jclhhma4myll1g3vsxr8rj0dx1bvjfimkryw"; depends=[raster sf tibble]; }; - basicMCMCplots = derive2 { name="basicMCMCplots"; version="0.2.6"; sha256="057w8xzr0d3jvphhsq55ph9ck5hf4kiihfj57xbbyqx8biyfrjhc"; depends=[]; }; + basicMCMCplots = derive2 { name="basicMCMCplots"; version="0.2.7"; sha256="02lwkbpr9yj5q7l3ing1v47c4ifvwaxn8yyr3b34fral08cgpn9x"; depends=[]; }; basicTrendline = derive2 { name="basicTrendline"; version="2.0.5"; sha256="0402nvm3i32sx3m3c7r74iaj22h570v819yiwkraicjpmg55dghi"; depends=[investr scales]; }; basicspace = derive2 { name="basicspace"; version="0.24"; sha256="1cy226njbax7dcgql89fns4l4w9fq328x3h0vb93l5jk883jgi8h"; depends=[]; }; basictabler = derive2 { name="basictabler"; version="1.0.2"; sha256="0d5gpvf3la0fky786z74i8q7il1mmb2prg8y9wslg2gbngnkvkvm"; depends=[dplyr htmltools htmlwidgets R6]; }; @@ -6467,7 +6468,7 @@ in with self; { bioset = derive2 { name="bioset"; version="0.2.3"; sha256="15vchim8cim42j1if0jars696rh50vmbggr9748q321f6ngm1w1i"; depends=[dplyr magrittr rlang tibble tidyr]; }; biosignalEMG = derive2 { name="biosignalEMG"; version="2.1.0"; sha256="0bbkrfqkmks4z8c7rh0k43lvm71vn3fzrw3kpj012ym77whwkvay"; depends=[signal]; }; biospear = derive2 { name="biospear"; version="1.0.2"; sha256="10y4hbncwiqpxzqvzjrmfgp804zczdgvwpjcj0dzaa0sx1njdzja"; depends=[cobs corpcor devtools glmnet grplasso MASS Matrix mboost pkgconfig plsRcox pROC PRROC RCurl survAUC survival]; }; - biostat3 = derive2 { name="biostat3"; version="0.1.5"; sha256="1hnq2al27033zagxjd0r8nls6z8lznfqqiyrharq07s6bgbl5bv9"; depends=[car MASS muhaz survival]; }; + biostat3 = derive2 { name="biostat3"; version="0.1.6"; sha256="12i8ki1yair4sycfcwrhl10khfxzx5q2slzqjwcrqfxg69q8ak4l"; depends=[MASS muhaz survival]; }; biosurvey = derive2 { name="biosurvey"; version="0.1.1"; sha256="1hhch5qagn86pcn43qlmv0azfbjc9yv58yp9v1p5s6r5ffxkgs95"; depends=[diptest doParallel foreach ks maps picante raster rgdal rgeos sp spatstat_geom vegan]; }; biotic = derive2 { name="biotic"; version="0.1.2"; sha256="1p18jkdd263dgk90626n9awkj6m4zn1n7897596fzrzrahksa978"; depends=[]; }; biotools = derive2 { name="biotools"; version="4.2"; sha256="1dyy9mk2afjbc8g1qygy6h1aksbhndm53c4sb5mfzriydl03ibxv"; depends=[boot MASS]; }; @@ -6489,7 +6490,7 @@ in with self; { bitmexr = derive2 { name="bitmexr"; version="0.3.1"; sha256="1h4fdh88b8j1p6hxabwf2v1wm8wnqzpl67hh15pjky2hhczfds05"; depends=[attempt curl digest dplyr httr jsonlite lubridate magrittr progress purrr rlang stringr]; }; bitops = derive2 { name="bitops"; version="1.0-7"; sha256="1i0phmq5yynla5x0frqll1gbf5ww59p3sgz1s06a354zqf9grdg9"; depends=[]; }; bitsqueezr = derive2 { name="bitsqueezr"; version="0.1.1"; sha256="0dy180r9cclq46mh0fzc68p5zm9x2z5pa8ajgsk7qycdkyw5v829"; depends=[]; }; - bittermelon = derive2 { name="bittermelon"; version="0.1.3"; sha256="09askrgm3fandkvrpzf5p9ysxs837ass0cmqi92dlv980m63zdip"; depends=[findpython png Unicode]; }; + bittermelon = derive2 { name="bittermelon"; version="0.2.1"; sha256="0acgi9x3v508igr5nr86nhxzjpl9m8nmqzg7iq65j6pvlr68n7zx"; depends=[findpython png rappdirs Unicode]; }; bivgeom = derive2 { name="bivgeom"; version="1.0"; sha256="1cn8k7q011whr4f7zig85dsrkz04614z9ns2ky6k6i16s5n3glxy"; depends=[bbmle copula]; }; bivquant = derive2 { name="bivquant"; version="0.1"; sha256="05dn4qik2dvmgqc2613vddh312bqhza1vnf94an75888gxri5h03"; depends=[copula cubature lpSolve MASS mvtnorm regpro]; }; bivrp = derive2 { name="bivrp"; version="1.2-2"; sha256="0b38nh38vgqjllb1z9627dm86yp0s06ky1g829g8kkz7rffdp2za"; depends=[MASS]; }; @@ -6535,7 +6536,6 @@ in with self; { bltm = derive2 { name="bltm"; version="0.1.0"; sha256="1sx4ii65ddvdw45za8j320v1s9d1pz5k2gx979yymhyxi8fmq69z"; depends=[mvnfast Rfast]; }; bmabasket = derive2 { name="bmabasket"; version="0.1.1"; sha256="1hgbl1x38snhzbh5j1qz81azkdwzmm4idacyyyrn895vl71ypfrn"; depends=[partitions Rcpp RcppArmadillo]; }; bmass = derive2 { name="bmass"; version="1.0.3"; sha256="0dafixd996lamn5kfbqpiawblalhyw1gi394j46n2sij2r209d76"; depends=[]; }; - bmd = derive2 { name="bmd"; version="0.5"; sha256="0d4wxyymycb416sdn272292l70s1h2m5kv568vakx3rbvb8y6agy"; depends=[drc]; }; bmem = derive2 { name="bmem"; version="1.8"; sha256="1nhybz8aarzlqjx4443hsflflgy2jcprz5dv6mwxacnyspm93vlq"; depends=[Amelia lavaan MASS sem snowfall]; }; bmeta = derive2 { name="bmeta"; version="0.1.2"; sha256="19pm60xpmlanngq4nbibp0n5m98xw24b2xghz92ly31i3mkg2n68"; depends=[forestplot R2jags]; }; bmgarch = derive2 { name="bmgarch"; version="1.0.1"; sha256="1jvfrzkjblzvm97wfwbwzz73sbhjkfkqg84rhgb2154vf2sdp139"; depends=[BH forecast ggplot2 loo MASS Rcpp RcppEigen Rdpack rstan rstantools StanHeaders]; }; @@ -6658,7 +6658,7 @@ in with self; { brotli = derive2 { name="brotli"; version="1.2"; sha256="07rgdgxh9bvn0qavpclxmkglwyl6ndqasxcs6j12if698dkn976b"; depends=[]; }; brr = derive2 { name="brr"; version="1.0.0"; sha256="050ivnqcaxiyypd1sxfpy6ianhzzmvs6c77ga40g3440cvfigkgw"; depends=[gsl hypergeo pander stringr SuppDists TeachingDemos]; }; brranching = derive2 { name="brranching"; version="0.7.0"; sha256="06jy3qhbr0v4m1j4j8a7fb7ic59sx4zhlsm1yb3g6rdwc00d67wj"; depends=[ape conditionz crul curl phylocomr phytools taxize]; }; - bruceR = derive2 { name="bruceR"; version="0.7.2"; sha256="0ynsimhqyq3anbmysw6269vnil9175gskx6qyyc1vcd0km4b75i9"; depends=[cowplot crayon ggplot2 ggtext glue jmv pacman performance see]; }; + bruceR = derive2 { name="bruceR"; version="0.7.3"; sha256="1x3fm01vphcwqdwmav6nx7g94m9ll8xrxx9dmrg7awrjrc5zda0b"; depends=[cowplot crayon ggplot2 ggtext glue jmv pacman performance see]; }; brunnermunzel = derive2 { name="brunnermunzel"; version="1.4.1"; sha256="1lba5cpiray65zg1pv3xv6yl1xg78rqlwxkcmhgizlh1rhpd430p"; depends=[]; }; brxx = derive2 { name="brxx"; version="0.1.2"; sha256="08qlfnf84k3yjcvr1wm6gd96mk26xf2gz59ychb3m981228hbbs6"; depends=[blavaan blme GPArotation MASS MCMCpack rstan TeachingDemos]; }; bs4Dash = derive2 { name="bs4Dash"; version="2.0.3"; sha256="17vpng0s0sr3bnaqq3d545s72zd5a7isdbvzh01148lzq0va710g"; depends=[bslib fresh htmltools httpuv httr jsonlite lifecycle shiny waiter]; }; @@ -6685,7 +6685,7 @@ in with self; { bubblyr = derive2 { name="bubblyr"; version="0.1.2"; sha256="04agfwk6rmbhlfblfw1irqnv3yrp00zfn4qwy2169b7ypg8r55v2"; depends=[glue htmltools]; }; bucky = derive2 { name="bucky"; version="1.0.6"; sha256="01rlx0m6h66y1p9k5llg17qpajjhk2vmhbpwc4i5igf5x5g4clgc"; depends=[lmtest sandwich]; }; buffeRs = derive2 { name="buffeRs"; version="0.31"; sha256="1yr2bg2cyl8sm4g7jrjw9apj5lqhbqscw5mshs8r8niz0fkyq6lg"; depends=[sf]; }; - buildmer = derive2 { name="buildmer"; version="2.1"; sha256="0sw8cgkx164qswsl59g4z81kgcxrajn0vzrwa8p4mbcv8q60qvip"; depends=[lme4 mgcv nlme plyr]; }; + buildmer = derive2 { name="buildmer"; version="2.2"; sha256="1r5c38gwzihp7cn3cdm11wl10pxa3b7b1fdxwjsk16mqa0w2ivhd"; depends=[lme4 mgcv nlme plyr]; }; buildr = derive2 { name="buildr"; version="0.1.0"; sha256="125s41d2ahww7ngli2mgl5999syjm5q5mxskv6jjrnfv7l6vhm3k"; depends=[glue magrittr readr rstudioapi stringr tibble usethis]; }; bujar = derive2 { name="bujar"; version="0.2-9"; sha256="1hx9yrry1v3vl14y1wpfp1l3cymyqhnff86sv6b112b9cfjpwmvq"; depends=[bst earth elasticnet gbm mboost mda modeltools mpath rms survival]; }; bulletcp = derive2 { name="bulletcp"; version="1.0.0"; sha256="1k7lw8gflih47ncz8hgsj0sxbajnkhz1k7yb7rwbdnzcki3n3jln"; depends=[assertthat dplyr mvtnorm Rdpack]; }; @@ -6935,6 +6935,7 @@ in with self; { cfda = derive2 { name="cfda"; version="0.9.9"; sha256="07k531vp2chsrkw5d0iws3jg23yz0gni0bjn03kr6irw89r4py9p"; depends=[diagram fda ggplot2 mgcv msm pbapply]; }; cfdecomp = derive2 { name="cfdecomp"; version="0.4.0"; sha256="0g61gpihk5kbbrqzn15fqjv3bawsq1vq3sdssbzs5j96afmf2aq8"; depends=[]; }; cffdrs = derive2 { name="cffdrs"; version="1.8.18"; sha256="15bl1sfm2yz897b5w0x0kvyf2z3rx32n436gsnsx5gd32v5v18w1"; depends=[data_table doParallel foreach geosphere raster rgdal]; }; + cffr = derive2 { name="cffr"; version="0.1.0"; sha256="00fzfji73hjipi79h2vz88whqs8p4ip5cld0vvv40d5sfgmkw9ml"; depends=[crayon desc jsonlite jsonvalidate yaml]; }; cfid = derive2 { name="cfid"; version="0.1.2"; sha256="0hy2vq3izj4938sgzmgpp4m9d49hpiqh9jd1wjf5g54x3v1yzy89"; depends=[]; }; cfma = derive2 { name="cfma"; version="1.0"; sha256="006z5g3rqpg44jqdf6ivyxr47sxm5cd9cqhayfi8qk73xx5w4lv9"; depends=[]; }; cfmortality = derive2 { name="cfmortality"; version="0.3.0"; sha256="0dgwv89fzylznc6jr41ixzfs1gfs3np4gf46bk6pcd09l1kbx3lc"; depends=[]; }; @@ -6988,7 +6989,6 @@ in with self; { chest = derive2 { name="chest"; version="0.3.5"; sha256="0jmihq8p6gxyxgmpdgwmnhl98s38pqzdzdqzqiy54zyqgd69plh8"; depends=[broom dplyr forestplot generics ggplot2 MASS speedglm survival tibble]; }; chi = derive2 { name="chi"; version="0.1"; sha256="1y91mwahj4j2wz0y5k5vdpq7ygq834h8jkn37n74lqnwvv1968rr"; depends=[]; }; chi2x3way = derive2 { name="chi2x3way"; version="1.1"; sha256="13qc8sigiw4gcxk8y50q7yfgzbssjyl41fizzjqzcp3p14kpsmzw"; depends=[]; }; - chicane = derive2 { name="chicane"; version="0.1.7"; sha256="0gaq1icwbcn1lzj92qhmai2cwvkm26m8srw988cb6xd51v819v3l"; depends=[bedr data_table doParallel foreach gamlss gamlss_tr iterators knitr MASS rmarkdown]; }; chickn = derive2 { name="chickn"; version="1.2.3"; sha256="1d3xl2pigan6vb29nk2ks04dsl5vy16cv9z7miskmhcqcx2wm1qb"; depends=[bigstatsr doParallel doRNG foreach MASS mvnfast nloptr pracma Rcpp RcppArmadillo RcppParallel Rdpack rmio zipfR]; }; childdevdata = derive2 { name="childdevdata"; version="1.1.0"; sha256="016x6xhqq1mfqlj9m5qv63k639xnqnrf5h6rdcyaa8sxn7nv34zm"; depends=[]; }; childesr = derive2 { name="childesr"; version="0.2.2"; sha256="1r4s6klwpdx1w17b611lqf6q9wpqknvqc6890jfav740dg8icl9z"; depends=[DBI dbplyr dplyr jsonlite magrittr purrr RMySQL]; }; @@ -7053,6 +7053,7 @@ in with self; { ciuupi = derive2 { name="ciuupi"; version="1.1.0"; sha256="0czfmmf62p1vml24s87pdwv52spqycchpkqzwk8vyd4n1z27r5s2"; depends=[functional nloptr pracma statmod]; }; ciuupi2 = derive2 { name="ciuupi2"; version="1.0.1"; sha256="04x02qmqqyrc4h4z4mpl4zn5vr9y28k6j6n30fbr9q238zd543db"; depends=[functional nloptr pracma PreciseSums statmod]; }; civis = derive2 { name="civis"; version="3.0.0"; sha256="12q96bj21832zqqbisfxmnpqw7w72v350lyf7cpjgr7cq7b51brd"; depends=[future httr jsonlite memoise]; }; + cjbart = derive2 { name="cjbart"; version="0.2.0"; sha256="04zcy1051q9kgvjf9y3a952qz07r2syw80asndg9hbwx0jbvvpqm"; depends=[BART ggplot2 randomForestSRC Rdpack rlang tidyr]; }; cjoint = derive2 { name="cjoint"; version="2.1.0"; sha256="1bs380ji9vsc1d77wqhl0ij9xblww3g9x3hiwpcpz26wihqcx7ac"; depends=[DT ggplot2 lmtest Matrix sandwich shiny shinyBS shinyjs survey]; }; ckanr = derive2 { name="ckanr"; version="0.6.0"; sha256="1fhyyyklfsi1zva9vg397x8p0zbnchajkjb1kcfm4f861xq60j16"; depends=[crul DBI dbplyr dplyr jsonlite magrittr]; }; clValid = derive2 { name="clValid"; version="0.7"; sha256="18aiyjhnh5mfdxbzns4cy0r8bymfikhwkybpn4g04qhli5ls8z83"; depends=[class cluster]; }; @@ -7087,6 +7088,7 @@ in with self; { cliapp = derive2 { name="cliapp"; version="0.1.1"; sha256="0v62lbcsja0xmlpqcps370n5c7bk4j2n8pwh9xyif5s4wpf82qz1"; depends=[cli crayon fansi glue prettycode progress R6 selectr withr xml2]; }; clickR = derive2 { name="clickR"; version="0.8.0"; sha256="0j8hl5cgdm4j4h3x3h7fp6w3xr8p350icvmf123z56f6fkj6c22z"; depends=[beeswarm stringdist]; }; clickstream = derive2 { name="clickstream"; version="1.3.1"; sha256="0z1yy5lr9m5x9ybimjy3f6kn490abdi038xi0qw7ny80f1ca6ry7"; depends=[arules ClickClust data_table ggplot2 igraph linprog MASS plyr reshape2 Rsolnp]; }; + cliff = derive2 { name="cliff"; version="0.1.2"; sha256="0d7aswvsqlyai3rxxbfy08cs4qbi9fjjls62y1p95bmnhq1b3bwf"; depends=[ellipsis processx rlang]; }; clifford = derive2 { name="clifford"; version="1.0-2"; sha256="17br7p4zj1cjf1nbwbk0a2jjxj589qgvlnzi6yp4dqlf2g0w01z6"; depends=[BH Rcpp]; }; clifro = derive2 { name="clifro"; version="3.2-5"; sha256="1p2xy5r9axkj8yk6ywaq0w5i00bdfm15drjz227nx8p4vd3q6si8"; depends=[ggplot2 httr lubridate magrittr RColorBrewer reshape2 rvest scales stringr xml2]; }; clikcorr = derive2 { name="clikcorr"; version="1.0"; sha256="0zdnbcl5q293mmm6pbn4ri7p1q6z6sff74axsb3nyd153v2xamr5"; depends=[mvtnorm]; }; @@ -7150,7 +7152,7 @@ in with self; { clusterhap = derive2 { name="clusterhap"; version="0.1"; sha256="1ic6588mqp146jsvrxlxk449zw4n81xixgrny9r29497z7hg5a1m"; depends=[]; }; clustering_sc_dp = derive2 { name="clustering.sc.dp"; version="1.0"; sha256="0cppka7613cbjjf1q2yp6fln511wbqdhh8d4gs6p0fbq379kzmvc"; depends=[]; }; clustermole = derive2 { name="clustermole"; version="1.1.0"; sha256="15v3fspp82z7vh5f1ym89mrmajl8b7qymwr1fqa6kfi982dzhrar"; depends=[dplyr GSEABase GSVA magrittr rlang singscore tibble tidyr]; }; - clustermq = derive2 { name="clustermq"; version="0.8.95.1"; sha256="1777c1xg15p6dm5grz64yd35nbhmj914dyxpymv6hl25g740c2ky"; depends=[narray progress purrr R6 Rcpp]; }; + clustermq = derive2 { name="clustermq"; version="0.8.95.2"; sha256="1p5jy4mq70wh8rrkppshjy9pksw06k9l2d65c6sj1ykhvqiwcpcc"; depends=[narray progress purrr R6 Rcpp]; }; clusternomics = derive2 { name="clusternomics"; version="0.1.1"; sha256="05nkw6h2dvky07fj50myzw5xlkqyiflbn4vwqw8a1q2idv4awi7b"; depends=[magrittr MASS plyr]; }; clustertend = derive2 { name="clustertend"; version="1.5"; sha256="194acf2pd71jxyyjj7ri9mpnx094zziwmq6w9lfclifrnkqv6ra9"; depends=[]; }; clustrd = derive2 { name="clustrd"; version="1.3.7-2"; sha256="0j0nmqc9q9djg824g89z27xizdy1jdsygz1gc0r0mrzdd3dyk2ya"; depends=[ca cluster corpcor dplyr fpc GGally ggplot2 ggrepel plyr rARPACK tibble]; }; @@ -7179,7 +7181,7 @@ in with self; { cms = derive2 { name="cms"; version="0.1.0"; sha256="0m3cxvw40nyr1jpdkhg5nbms16hkzj0mrx5nl39x1l42cx2hcjrl"; depends=[assertthat dplyr magrittr readr rlang rvest xml2]; }; cmsaf = derive2 { name="cmsaf"; version="3.3.0"; sha256="0k4bdimykhc224m81mvr4ld5bffixgxdwg3qk5gdx58b01a2f0xg"; depends=[cmsafops cmsafvis colorspace colourpicker data_table fields FNN mapproj maps maptools ncdf4 R_utils raster rworldxtra SearchTrees shiny shinyFiles shinyjs shinythemes sp xml2]; }; cmsafops = derive2 { name="cmsafops"; version="1.2.1"; sha256="1gygd4nb05wsgbzmz10ly93kpy3w8jhcn7n6qgsh9jws6r9axvva"; depends=[assertthat fields FNN ncdf4 progress rainfarmr raster SearchTrees sp trend]; }; - cmsafvis = derive2 { name="cmsafvis"; version="1.1.7"; sha256="1qbdh8qwi89xmzj6rrcfvnl6g2w0p1rjsvgcmwkra4fiiksrpani"; depends=[animation assertthat cmsafops colorspace countrycode fields gridExtra mapproj maps maptools ncdf4 png progress raster rasterVis RColorBrewer rgdal rworldxtra SearchTrees sp yaml]; }; + cmsafvis = derive2 { name="cmsafvis"; version="1.1.8"; sha256="001nhzg9vh2airgdja0f54hbh3hrsmwrfvxawfwck1ll93b810j7"; depends=[animation assertthat cmsafops colorspace countrycode fields gridExtra mapproj maps maptools ncdf4 png progress raster rasterVis RColorBrewer rgdal rworldxtra SearchTrees sp yaml]; }; cmstatr = derive2 { name="cmstatr"; version="0.9.1"; sha256="18kcrnbi3r8n8d7s8cl55r2n41cv4q4h6g8lf4pdkv06axg3l7ad"; depends=[dplyr generics ggplot2 kSamples MASS purrr rlang tibble]; }; cmvnorm = derive2 { name="cmvnorm"; version="1.0-6"; sha256="1wf23w9gxrrgw7j740r381xrss09inzd7mrg6g7wz883c9madbfn"; depends=[elliptic emulator]; }; cna = derive2 { name="cna"; version="3.2.0"; sha256="01072i679n9pkvzcbnbqy8nrcs8lbghlf6wx17pf2shmrfvxhvcl"; depends=[car Matrix matrixStats Rcpp]; }; @@ -7361,17 +7363,17 @@ in with self; { conicfit = derive2 { name="conicfit"; version="1.0.4"; sha256="1d704xgiyqmbwfxnsmhqg885x10q8yqxmrk4khqpg3lh696bw97d"; depends=[geigen pracma]; }; conics = derive2 { name="conics"; version="0.3"; sha256="06p6dj5dkkcy7hg1aa7spi9py45296dk0m6n8s2n3bzh3aal5nzq"; depends=[]; }; conjoint = derive2 { name="conjoint"; version="1.41"; sha256="1iq3226a6fn1gddmh2nxlzvjcvbj7502r9520g9d4xdmk8smfx33"; depends=[AlgDesign broom cluster fpc ggfortify ggplot2]; }; - conjurer = derive2 { name="conjurer"; version="1.3.0"; sha256="0qphn3xkcb8xwpywfkfmhmvyx1x4wjvjd66wsqawj73kd5v9ydk7"; depends=[]; }; + conjurer = derive2 { name="conjurer"; version="1.4.0"; sha256="0llvqjg0rrd75n1gz9b1njizs6s1mgygcv7hmalknqibvxd185ac"; depends=[]; }; conleyreg = derive2 { name="conleyreg"; version="0.1.4"; sha256="04blnplwzg930775jlz5hvxdmv0dyrrx25si5pvf7x6p9lvhzbf0"; depends=[data_table doParallel fixest foreach lfe lmtest lwgeom Matrix Rcpp RcppArmadillo Rdpack sf]; }; conmet = derive2 { name="conmet"; version="0.1.0"; sha256="0iwr8mmh9lk0psqxkgnd7ldhg57ivbkv0b3a18gli06983mhzjdc"; depends=[dplyr DT foreign Hmisc lavaan openxlsx purrr semTools shiny shinydashboard shinyWidgets stringr summarytools waiter]; }; connectwidgets = derive2 { name="connectwidgets"; version="0.1.1"; sha256="0sj8nik6dyyzflpq9vqd8wzlhky6jl2wfiaz788i6a2wdhckyc1m"; depends=[bslib crosstalk digest dplyr glue htmltools htmlwidgets httr jsonlite magrittr purrr R6 reactable reactR rlang sass tibble]; }; conogive = derive2 { name="conogive"; version="1.0.0"; sha256="0a8v7v0fds0psfnbx9x45way8z1f1xn2ncgbrn5rb6fjq0a1zs4x"; depends=[assertthat checkmate mvtnorm psych]; }; conos = derive2 { name="conos"; version="1.4.3"; sha256="15gbaa2lq256fgd4wgvf6hkv0k9w45764kya55hcr1z6wqx53i7z"; depends=[abind ComplexHeatmap cowplot dendextend dplyr ggplot2 ggrepel gridExtra igraph irlba leidenAlg magrittr Matrix Matrix_utils N2R R6 Rcpp RcppArmadillo RcppEigen RcppProgress reshape2 rlang Rtsne sccore]; }; conover_test = derive2 { name="conover.test"; version="1.1.5"; sha256="0f1p10klidk1xic1wd48j9rjh2fb3z6pfjx4y021lglx1w3av68k"; depends=[]; }; - conquer = derive2 { name="conquer"; version="1.2.0"; sha256="1y87ky1fzkc9bgw31sk2zzxipiyqwca6my7phwdv60lfclii4i8h"; depends=[caret Matrix matrixStats Rcpp RcppArmadillo]; }; + conquer = derive2 { name="conquer"; version="1.2.1"; sha256="0i9g27f52zl2kb2392g0y614drf6s87dqz12aphj889ajq7zjm0k"; depends=[caret Matrix matrixStats Rcpp RcppArmadillo]; }; conquestr = derive2 { name="conquestr"; version="0.8.5"; sha256="1xh09a379g1msib5fvf72llvf2gwqb7ciacw7j7iqrkb2ddpaglk"; depends=[ggplot2 ggrepel Rcpp reshape rlang stringr]; }; conserveR = derive2 { name="conserveR"; version="1.0.4"; sha256="05b1pqgbd9sh4lyg9zqjfg4019dqp8xj3k1w31qqdld8m3g5lrd6"; depends=[cowplot GGally ggplot2 ggrepel magrittr network rlang scales sna]; }; - consort = derive2 { name="consort"; version="0.2.0"; sha256="12r01p3kszybp8snb6bqhp59w2rzk8wc1jrd2rd1fgvrd134s7ph"; depends=[Gmisc]; }; + consort = derive2 { name="consort"; version="1.0.0"; sha256="1ids2yzba2qj3q68hrzpx1lw0knicx7zf44v24g0xqh36vj943v2"; depends=[gtable]; }; consortr = derive2 { name="consortr"; version="0.9.1"; sha256="1c71wvr7sckrv4k65l71l160z6d9amzyydbi6mf2b79zh9zv8g1g"; depends=[data_table DiagrammeR dplyr magrittr purrr rlang shiny shinydashboard tibble]; }; constants = derive2 { name="constants"; version="1.0.1"; sha256="11nliijwphqphik95b3xpawpjg7w4s089wdhjci5bw4va4bgd1xm"; depends=[]; }; constellation = derive2 { name="constellation"; version="0.2.0"; sha256="1d49rnyf2z3bvx158nsmgmb0x7xcgxl9f8y98pwg5wlqck7af99q"; depends=[data_table]; }; @@ -7524,10 +7526,9 @@ in with self; { cpca = derive2 { name="cpca"; version="0.1.2"; sha256="1pccsjahb1qynnxa0akhfpcmhfmdg4rd1s6pfqrdl7bwbcmq4lqf"; depends=[]; }; cpd = derive2 { name="cpd"; version="0.1.0"; sha256="1qcyb7n69ppa0py7w31msim7gf2wdh94hmsilsdk8ivxljc1gv8n"; depends=[fAsianOptions Rdpack]; }; cpk = derive2 { name="cpk"; version="1.3-1"; sha256="1njmk2w6zbp6j373v5nd1b6b8ni4slgzpf9qxn5wnqlws8801n73"; depends=[]; }; - cplexAPI = derive2 { name="cplexAPI"; version="1.4.0"; sha256="00h2zir1ffzjiglfyq8bsfmgq9z155jr0k0fxv8fsbfyw2x9dg10"; depends=[]; }; cplm = derive2 { name="cplm"; version="0.7-9"; sha256="057m61rq2hzb55imj3922zmc9kjxh053k3kgy54a4l0jlxb90lyj"; depends=[biglm coda ggplot2 Matrix minqa nlme reshape2 statmod tweedie]; }; cpm = derive2 { name="cpm"; version="2.3"; sha256="07zbvc5jkwv76lkzby6r073fxjsqgnrdl2w9lcph577knnip89jx"; depends=[]; }; - cpp11 = derive2 { name="cpp11"; version="0.4.0"; sha256="11qyliiw2qrac56mq5h9v7gy3dvwjj1i26pvygwbpprhvh3zss0p"; depends=[]; }; + cpp11 = derive2 { name="cpp11"; version="0.4.1"; sha256="1nk47xkab7i17h7917l4cfyfvnxf782dfq67wwxa6n0r4jqqxzz9"; depends=[]; }; cppRouting = derive2 { name="cppRouting"; version="2.0"; sha256="0yfiyg1clnl85lk5ah8dcchv71drk6r093vpl82xnczyan5z94sr"; depends=[data_table Rcpp RcppParallel RcppProgress]; }; cpr = derive2 { name="cpr"; version="0.2.3"; sha256="1a2lza1bw74xzrs17a9gr9mnpvnnrykhwd73yqi63wp3k4sm42rb"; depends=[dplyr ggplot2 lazyeval lme4 magrittr plot3D Rcpp RcppArmadillo rgl tibble tidyr]; }; cprobit = derive2 { name="cprobit"; version="1.0.2"; sha256="16fnndpkd226paahmadsddakj4yhybw7lp3csr73fwv78zfl2fj9"; depends=[car ggplot2 gridExtra nortest]; }; @@ -7584,13 +7585,14 @@ in with self; { cropZoning = derive2 { name="cropZoning"; version="1.0.1"; sha256="19082p5c322m684fkjcxa1bcmk3vzga2x75lid9zrsrh6knrqsbz"; depends=[ggplot2 ncdf4 raster rgdal tidyr]; }; cropdatape = derive2 { name="cropdatape"; version="1.0.0"; sha256="19bn0apx4p8hnz388zg7sq59qv89vv8k5php317kcv7ai2k2gh34"; depends=[]; }; cropgrowdays = derive2 { name="cropgrowdays"; version="0.1.0"; sha256="0q1zybx84mn8kiq5wn1hs3sc4xnk6r45shzddz27qkm6b1c4grbg"; depends=[dplyr httr lubridate magrittr purrr purrrlyr tibble]; }; + crops = derive2 { name="crops"; version="1.0.1"; sha256="153m0mv0hkc8f5kgaa8374z51g0jaq0s0zjbr19x309w1dd3g83g"; depends=[cowplot ggplot2 magrittr memoise pacman Rdpack reshape sets tibble tidyverse]; }; crossReg = derive2 { name="crossReg"; version="1.0"; sha256="1866jhfnksv9rk89vw7w4gaxi76bxfjvqxx7cfa8nlrcsmaqd7rf"; depends=[]; }; crossdes = derive2 { name="crossdes"; version="1.1-1"; sha256="1d7lv3ibq1rwxx8kc3ia6l9dbz2dxdd5pnf2vhhjmwm448iamcfd"; depends=[AlgDesign gtools]; }; crossmap = derive2 { name="crossmap"; version="0.3.0"; sha256="0dw1sg1by5805l72s5sbldznyp9qph9qrm4sizvqdx74bhb59s1y"; depends=[backports broom dplyr purrr rlang]; }; crossmatch = derive2 { name="crossmatch"; version="1.3-1"; sha256="082lrv2129mfhwlh99z3g8id3a29s8854skl152bl3ig8pk2gbjz"; depends=[nbpMatching survival]; }; crossrun = derive2 { name="crossrun"; version="0.1.0"; sha256="0br57nraqhs5f1cpidc8kd31izm82wvhiw9pxcdj9v51l9vifbmx"; depends=[Rmpfr]; }; crosstable = derive2 { name="crosstable"; version="0.2.2"; sha256="0i87i0nnw6vs17c60q00inkd14mq50gq2sf4dx4pm5qyb51xjn0g"; depends=[checkmate dplyr ellipsis flextable forcats glue lifecycle officer purrr rlang stringr survival tibble tidyr tidyselect]; }; - crosstalk = derive2 { name="crosstalk"; version="1.1.1"; sha256="1n6c6s7a6yxiwvva71x6bzcrim8xprl5s01fqiy61yq0y3vk8cpd"; depends=[htmltools jsonlite lazyeval R6]; }; + crosstalk = derive2 { name="crosstalk"; version="1.2.0"; sha256="180y7mhpj17axpadwhh7s0qvrpdnag7g977vk256l96d6nmvlds2"; depends=[htmltools jsonlite lazyeval R6]; }; crossval = derive2 { name="crossval"; version="1.0.4"; sha256="0vshlyc6w4kfs03n56ylapiqgdyday7068wmfsphj4lhw322s4yp"; depends=[]; }; crosswalkr = derive2 { name="crosswalkr"; version="0.2.6"; sha256="1rxd6vy7vdrawmg7zkydl1f2wwklnzgh9dsnxbg966xrr3l9x1n9"; depends=[haven labelled readr readxl tibble]; }; crossword_r = derive2 { name="crossword.r"; version="0.3.6"; sha256="1s31613s4qxxspka9bhgq3rq8xraf48mwfv6phvz6v06gijh64lr"; depends=[dplyr jsonlite magrittr R6 r6extended stringr]; }; @@ -7598,6 +7600,7 @@ in with self; { crplyr = derive2 { name="crplyr"; version="0.3.8"; sha256="0vfr8pdxpcmfslv7kn0jhcxjxkhhsqhy729h6v22bazp56zam08v"; depends=[crunch dplyr ggplot2 httptest lazyeval lifecycle purrr rlang scales stringr tibble tidyselect viridisLite]; }; crqa = derive2 { name="crqa"; version="2.0.2"; sha256="0dg2aqc4dc27chwqym23r2ajqk4vjgi73qdv6i4zmra4rf4s0md5"; depends=[FSA gplots Matrix plot3D pracma rdist tseriesChaos]; }; crrSC = derive2 { name="crrSC"; version="1.1"; sha256="171cw56q2yv1vb4qd0va75i2q89jcw1126q8pcbv0235g7p2a86z"; depends=[survival]; }; + crrcbcv = derive2 { name="crrcbcv"; version="1.0"; sha256="1rbmhnr7n99i0277d47i62ww6896z1g20v6vr558zmx3gvrs0b6k"; depends=[abind crrSC pracma survival]; }; crrp = derive2 { name="crrp"; version="1.0"; sha256="1fq54jr6avrli91a4z1hp5img4kghyw1yvjr5xyccsanf9i35x8r"; depends=[cmprsk Matrix survival]; }; crrstep = derive2 { name="crrstep"; version="2015-2.1"; sha256="03vd97prws9gxc7iv3jfzffvlrzhjh0g6kyvclrf87gdnwifyn1z"; depends=[cmprsk]; }; crs = derive2 { name="crs"; version="0.15-33"; sha256="0zzi3l35r4slq5iplgds4pkw4nf5594i5cwp4jrz5rbncw2vp19a"; depends=[boot np quantreg]; }; @@ -7657,9 +7660,9 @@ in with self; { cubature = derive2 { name="cubature"; version="2.0.4.2"; sha256="0kk9lw3s66h0sayza3in8rdj7bmgqn4v5lfckhslarpvj2fxsnv0"; depends=[Rcpp]; }; cubelyr = derive2 { name="cubelyr"; version="1.0.1"; sha256="1g3pvam1fkqh63snibqcfaazvj7lrkfip8w9pjvwdclj0l8382kl"; depends=[dplyr glue pillar purrr rlang tibble tidyselect]; }; cubeview = derive2 { name="cubeview"; version="0.2.0"; sha256="1352hi2j9x9rx4iy3xvsca86nsh39x1vnymd17f5qc8c3plfm8db"; depends=[base64enc htmltools htmlwidgets lattice raster stars viridisLite]; }; - cubfits = derive2 { name="cubfits"; version="0.1-3"; sha256="0i2iybm9vpyqnahzka66yms1namdd36bz1i1yjy74qsc1h995rga"; depends=[coda foreach]; }; cubicBsplines = derive2 { name="cubicBsplines"; version="1.0.0"; sha256="1dzwadhhrxgral9x4hxyyy1fyn45pmbwv6wiwfxhivkxmd3s2xdr"; depends=[]; }; cubing = derive2 { name="cubing"; version="1.0-5"; sha256="1q23fplvklaaldicqic0zpnh301m08zb9k21l47zj47g9m9pj4bc"; depends=[rgl]; }; + cuda_ml = derive2 { name="cuda.ml"; version="0.3.0"; sha256="15vhlr7adkjgxpydppg90i4zl3clpvi3bsdh3jlm0g3gkx0f0la2"; depends=[ellipsis hardhat parsnip Rcpp rlang]; }; cultevo = derive2 { name="cultevo"; version="1.0.2"; sha256="0rmncp4mrdpf3izhhqn9406i36j3d3d7i8cglip04lkfbypl9jvy"; depends=[combinat Hmisc pspearman stringi]; }; cumSeg = derive2 { name="cumSeg"; version="1.3"; sha256="0n1hp0abnd6zn72fkgkj9k875vivn5kr3q76sjy6q6va7x24j6sg"; depends=[lars]; }; cuml4r = derive2 { name="cuml4r"; version="0.1.0"; sha256="0zwm8laprwhkjn2ji16f08952hri3bk1qvpj8yhwaqiv4cj2q43k"; depends=[magrittr Rcpp rlang zeallot]; }; @@ -7705,7 +7708,6 @@ in with self; { cxr = derive2 { name="cxr"; version="1.0.0"; sha256="12rx7hna3h84a2xb2ir43xgb3zfmh0fhn5wcdjklk2g94dmwid28"; depends=[mvtnorm optimx]; }; cxxfunplus = derive2 { name="cxxfunplus"; version="1.0"; sha256="0kyy5shgkn7wikjdqrxlbpfl3zkkv4v1p8a1vv0xkncwarjs4n8d"; depends=[inline]; }; cycleRtools = derive2 { name="cycleRtools"; version="1.1.1"; sha256="1l7w2lm4s149ndd85v41pkdrdig6l3nmhl14bdx56aw8q57fxmb0"; depends=[Rcpp xml2]; }; - cyclestreets = derive2 { name="cyclestreets"; version="0.5.0"; sha256="1a7b28832w1qjqfr6i8apki01y53fq9nwg2bjzgyly363b0aghq4"; depends=[geodist httr jsonlite magrittr sf stringr]; }; cyclocomp = derive2 { name="cyclocomp"; version="1.1.0"; sha256="0gky3svk02wiajw7nfjh30684h3qxili4bvsab0m7b6cggw6bgyd"; depends=[callr crayon desc remotes withr]; }; cycloids = derive2 { name="cycloids"; version="1.0"; sha256="00pdxny11mhfi8hf76bfyhd1d53557wcbl2bqwjzlpw5x3vdnsan"; depends=[]; }; cyclomort = derive2 { name="cyclomort"; version="1.0.2"; sha256="0qmfwhrp7bq7av0yc95xnz2sd1jxfaiys9smrk1kpclnynnra9rr"; depends=[flexsurv lubridate magrittr mvtnorm plyr scales survival]; }; @@ -7749,6 +7751,7 @@ in with self; { dagirlite = derive2 { name="dagirlite"; version="0.1.0"; sha256="12j5mfxcv32qgx1yklcq8yl2kx4lkxap4biywjrj0sjx6zj60f8l"; depends=[knitr Rdpack]; }; dagitty = derive2 { name="dagitty"; version="0.3-1"; sha256="1a78g2nr8i7mzzxyb6mfsqqgjyf3s4hwngvyd9vyygzcb79bai3x"; depends=[boot jsonlite MASS V8]; }; daiR = derive2 { name="daiR"; version="0.9.0"; sha256="0kq633jpiagbpsj0190pzpxmz8df6niqc6lwqgrahxfpda798srk"; depends=[base64enc curl fs gargle glue googleCloudStorageR httr jsonlite magick pdftools purrr stringr]; }; + dalmatian = derive2 { name="dalmatian"; version="0.6.3"; sha256="13dww7v214khab7xyan53si7g5vliyk4ayr3jv9syblkvyzsxsqi"; depends=[coda dglm dplyr ggmcmc rlang tidyr]; }; dam = derive2 { name="dam"; version="0.0.1"; sha256="1b0fi3l8jxgpr9fwvi03giq7wm39msbh0c82ffgkh54a3bbf5blc"; depends=[]; }; dampack = derive2 { name="dampack"; version="1.0.1"; sha256="0mh3x0xgcipbd9341x3sfapysrd9m8aaakc1f53vwjj31c8vayqc"; depends=[dplyr ellipse ggplot2 ggrepel mgcv reshape2 scales stringr triangle truncnorm]; }; damr = derive2 { name="damr"; version="0.3.7"; sha256="12vr630m2az8xb8wndk8cyh7r8mwg3lvr7i3fcgqqxcq9rsgqm4r"; depends=[behavr data_table readr]; }; @@ -7761,7 +7764,7 @@ in with self; { darksky = derive2 { name="darksky"; version="1.3.0"; sha256="1740cw5qifgvqa0nafd6lmllxi32n1zm45zlify1yn3h1qdcszhb"; depends=[ggplot2 gridExtra gtable httr plyr]; }; dartR = derive2 { name="dartR"; version="1.9.9.1"; sha256="1i2ha796k5xhyzz8q26pygc9hy2ay2b357h50ljfs2rf4np6l0sz"; depends=[adegenet ape crayon devtools dplyr foreach ggplot2 gridExtra HardyWeinberg hierfstat MASS plyr PopGenReport robustbase SNPRelate sp StAMPP stringr tidyr vegan]; }; darts = derive2 { name="darts"; version="1.0"; sha256="07i5349s335jaags352mdx8chf47ay41q7b0mh2xjwn2h9kzgqib"; depends=[]; }; - dash = derive2 { name="dash"; version="0.5.0"; sha256="1hzyxplq0fclyr8ahh0mhrx1ibf49y43889p8fi8kmvg0x24i1iz"; depends=[assertthat base64enc brotli crayon dashCoreComponents dashHtmlComponents dashTable digest fiery htmltools jsonlite mime plotly R6 reqres routr]; }; + dash = derive2 { name="dash"; version="0.9.2"; sha256="0vwb37w62kf30gk7mw0cwlhmm6sr5sn1j6fxfk8zr01bkadk43ig"; depends=[assertthat base64enc brotli crayon digest fiery glue htmltools httpuv jsonlite magrittr mime plotly R6 reqres rlang routr]; }; dashCoreComponents = derive2 { name="dashCoreComponents"; version="1.10.0"; sha256="11jrlls6k6qlvi81741ga908aw22m05fhhr9jpzli982s611jrwl"; depends=[]; }; dashHtmlComponents = derive2 { name="dashHtmlComponents"; version="1.0.3"; sha256="01zrwjlhwwajk2lnv7is1r6nril83l65pynx856y9mvnm05xkb7m"; depends=[]; }; dashPivottable = derive2 { name="dashPivottable"; version="0.0.2-1"; sha256="1fv5pnvimf7w1k1lsijh9y2zk4z1z00m6m640jxvqla5i1rqy8cq"; depends=[]; }; @@ -7771,14 +7774,13 @@ in with self; { dat = derive2 { name="dat"; version="0.5.0"; sha256="1d3q4bang6pm06rfzh6h947xy3wwqn3l6ri0h4hzklg5pzwpsajd"; depends=[aoos data_table Formula magrittr progress]; }; data_table = derive2 { name="data.table"; version="1.14.2"; sha256="0arx5wna0sh0vf5q8rjhh8nqdmnvg2pdpbhljl9l0x4kwm8vjhgp"; depends=[]; }; data_tree = derive2 { name="data.tree"; version="1.0.0"; sha256="0pizmx2312zsym4m42b97q2184bg3hibvbdrblcga05xln84qrs0"; depends=[R6 stringi]; }; - data_validator = derive2 { name="data.validator"; version="0.1.5"; sha256="1p2dzn9q3vrqs3askp8ccriaxyhay8iyqhnaryr1drycwrd13wi8"; depends=[assertr dplyr htmltools htmlwidgets knitr purrr R6 rlang rmarkdown shiny shiny_semantic tibble tidyr]; }; data360r = derive2 { name="data360r"; version="1.0.8"; sha256="0g3prfaqy7d5fdla4l31cj87vhzi945g22zr7pi2c2whlk4q4n09"; depends=[curl data_table jsonlite reshape2]; }; dataCompareR = derive2 { name="dataCompareR"; version="0.1.3"; sha256="178293hk21qjczi7hyffhlwn0lxrz2k9nxsy7jykjdbsqalyxwli"; depends=[dplyr knitr markdown stringi]; }; dataMaid = derive2 { name="dataMaid"; version="1.4.1"; sha256="06jywq3llwafjnpklqimra456crdi752zxci6z1w0v7p8blf4vjw"; depends=[ggplot2 gridExtra haven htmltools magrittr pander rmarkdown robustbase stringi whoami]; }; dataMeta = derive2 { name="dataMeta"; version="0.1.1"; sha256="13xxayqxbps07h0xr5b7sb7q30gy5zm7jzzaq4k20fskkjrzhzcm"; depends=[dplyr]; }; dataPreparation = derive2 { name="dataPreparation"; version="1.0.2"; sha256="01ns6qrqr3pm9qfzc2lky0nqcnyn7adg3pdjf461kqhb2pvzcimv"; depends=[data_table lubridate Matrix progress stringr]; }; dataRetrieval = derive2 { name="dataRetrieval"; version="2.7.10"; sha256="0lmd2j9inc29s2xk09gk7rbypgcqzpb2vmnnbmbg1liw96jsz5wl"; depends=[curl httr jsonlite lubridate readr xml2]; }; - datacleanr = derive2 { name="datacleanr"; version="1.0.1"; sha256="1kvlnvh2s8csng9q1l5bgc6aw7ax88dfl0iwbi4r8gc76swcbywm"; depends=[clipr dplyr DT formatR fs glue htmltools htmlwidgets lubridate magrittr plotly purrr RColorBrewer rlang rstudioapi shiny shinyFiles shinyWidgets summarytools]; }; + datacleanr = derive2 { name="datacleanr"; version="1.0.2"; sha256="152n7y6hf4bds6dqlsd5ix5sr10k4idj3ywaa9ymzq5b2rp52xa3"; depends=[bslib clipr dplyr DT formatR fs glue htmltools htmlwidgets lubridate magrittr plotly purrr RColorBrewer rlang rstudioapi shiny shinyFiles shinyWidgets summarytools]; }; datadigest = derive2 { name="datadigest"; version="1.0.2"; sha256="1v4nwflrgjhwkrdlrjnqyq1spv1jkgxn1kmapml0zrvnvwf0r1a1"; depends=[haven Hmisc htmltools htmlwidgets jsonlite miniUI shiny tibble]; }; datadogr = derive2 { name="datadogr"; version="0.1.2"; sha256="10zbxb9gkymw78ras9y4wrifz7cxh3y630yzjcf9ds2p557vcjzp"; depends=[anytime dplyr glue httr lubridate purrr stringr tibble tidyr]; }; dataframeexplorer = derive2 { name="dataframeexplorer"; version="1.0.0"; sha256="1bl24z9hqhrs3k459b5hprwc7j639myvkx0qbfcyv3hmi7mbsd0q"; depends=[data_table dplyr magrittr openxlsx plyr stringr tibble tidyr]; }; @@ -7796,6 +7798,7 @@ in with self; { datapasta = derive2 { name="datapasta"; version="3.1.0"; sha256="0sqv29iv2rv50rbw1601rn8p7gv7rsw00djhl7h1znr0igzi5b82"; depends=[clipr readr rstudioapi]; }; dataprep = derive2 { name="dataprep"; version="0.1.4"; sha256="0knzwnhpj7ahrd12n56f65wmsmrapgnnqdl10b5cacf0idih12g5"; depends=[data_table doParallel dplyr foreach ggplot2 reshape2 scales zoo]; }; dataquieR = derive2 { name="dataquieR"; version="1.0.9"; sha256="0wc7vjjjffvmg9ahbqnygfrsk97n7k4y1y0ichvpr2nc8pfi7772"; depends=[dplyr emmeans ggplot2 ggpubr lme4 lubridate MASS MultinomialCI parallelMap patchwork R_devices reshape rlang robustbase]; }; + datardis = derive2 { name="datardis"; version="0.0.1"; sha256="1kf09c8sqvllyvjkjxkrxsqypg9wad7cm9mdqdhi0vlkj2d80h3b"; depends=[dplyr magrittr]; }; dataresqc = derive2 { name="dataresqc"; version="1.1.0"; sha256="1m7c93yk3dp1l5ysgscjvmv7z0xnmgaz4bkci4ljmmmn5a9v6r3c"; depends=[]; }; datarium = derive2 { name="datarium"; version="0.1.0"; sha256="1v98yxsxhfqlalz5qy3x5axb7fy067vf3y0qg7ngixphmy9qybym"; depends=[]; }; datarobot = derive2 { name="datarobot"; version="2.18.0"; sha256="1sjng65qjqbizyfdhc3iny04x56dpvbdb8mck2kl9lyayrjxp81g"; depends=[httr jsonlite yaml]; }; @@ -7811,6 +7814,7 @@ in with self; { datawizard = derive2 { name="datawizard"; version="0.2.1"; sha256="062phzfcvn79npn4s58gz1m5ignyvr4q2zlqnyxla4p7l760djl9"; depends=[insight]; }; datazoom_amazonia = derive2 { name="datazoom.amazonia"; version="0.2.0"; sha256="0l24blbscai47rj9s8a0znd5q4mayddp639107r8dib466ykrz3g"; depends=[data_table dplyr geobr googledrive Hmisc janitor labelled lubridate magrittr purrr RCurl readr readxl sf sidrar stringi stringr tibble tidyr XML]; }; date = derive2 { name="date"; version="1.2-39"; sha256="0mwp1619rxqyyyyxk224fh0x6g4rgyvr97q0kj076cxp71b97cdm"; depends=[]; }; + datefixR = derive2 { name="datefixR"; version="0.1.1"; sha256="051n7q7bwqbxazpdclbbd1qy57iq187g31xfclicaxjj23ba02ss"; depends=[stringr]; }; daterangepicker = derive2 { name="daterangepicker"; version="0.1.0"; sha256="1605ch84ad3nmmad0yy3id0izv0nz536lxwib6rkdkjik5761gqk"; depends=[htmltools jsonify shiny]; }; datetime = derive2 { name="datetime"; version="0.1.4"; sha256="0nn1yxknsn3crmwbkws5kvfjhd65dw0fkfbg67gba0dyaqp1jg37"; depends=[]; }; datetimeutils = derive2 { name="datetimeutils"; version="0.5-0"; sha256="030md2pydhgx8x8chga7byl8x41m2dbw94b4ds7md2nqkdrq7hqz"; depends=[]; }; @@ -8073,6 +8077,7 @@ in with self; { dimensionsR = derive2 { name="dimensionsR"; version="0.0.2"; sha256="1g9yjrq7xnqh427kzmhhmdavykzxidv51i2wx2w0kwhl6fqdd2fk"; depends=[httr jsonlite]; }; dina = derive2 { name="dina"; version="2.0.0"; sha256="1sq7998xc5qhvd8clc8r32ch7axinh2a2dc7i1w2p148wv130yhd"; depends=[Rcpp RcppArmadillo rgen simcdm]; }; dinamic = derive2 { name="dinamic"; version="1.0"; sha256="0mx72q83bbwm10ayr3f1dzwr5wgz7gclw7rh39yyh95slg237nzr"; depends=[]; }; + dineR = derive2 { name="dineR"; version="1.0.0"; sha256="012355jjg7qzv42nbpcdj99ikschdd1jhxfymv6p5z305rdp2qab"; depends=[MASS Matrix progress]; }; dineq = derive2 { name="dineq"; version="0.1.0"; sha256="1xrhrdc970f7hm9xng9z7xmshnmmz89cn3gmnyabzprx44ccr9sl"; depends=[boot Hmisc]; }; dint = derive2 { name="dint"; version="2.1.3"; sha256="0nxppn7gx4sjwn7jns5bwbqfid3jkbsx2lxi0rjdkbsawy77fc85"; depends=[]; }; dipm = derive2 { name="dipm"; version="1.2"; sha256="1irrq1iidkqc6j7bg5c0fpgyfhnbay6b3fjv4h5amqgarchb1igg"; depends=[ggplot2 partykit survival]; }; @@ -8099,7 +8104,7 @@ in with self; { discnorm = derive2 { name="discnorm"; version="0.1.0"; sha256="00dkdxvj0fmlmr9l34ajvfv1jzlnyr9sdnnpgik8lhcj5a7h8l6f"; depends=[arules lavaan MASS pbivnorm psych sirt]; }; disco = derive2 { name="disco"; version="0.6"; sha256="1abvhf0yb4mw02j1krjb7q68jpwdnl2narcalf3vkjcbflcp76z3"; depends=[ggplot2 RColorBrewer tmod]; }; discord = derive2 { name="discord"; version="1.1.0"; sha256="0is9gwj09zj25hklsxgi3k7ypq2qp2yx0vir6wgpnd30wa11zs5h"; depends=[]; }; - discourseGT = derive2 { name="discourseGT"; version="1.1.6"; sha256="1nq3pgd6jrv7v7gal7ba2gxq2255pjdi3vsnkdj73dwswzvq7w7k"; depends=[BiocManager dplyr GGally ggplot2 ggpubr ggrepel igraph network sna]; }; + discourseGT = derive2 { name="discourseGT"; version="1.1.7"; sha256="1nfc1v39y4af5l4zmp00dhp4bzp10wq107gx5ggrvpq9q2nn4hwd"; depends=[dplyr GGally ggplot2 ggrepel igraph network]; }; discoveR = derive2 { name="discoveR"; version="2.2.6"; sha256="0fwdcwiahb3svw2is07vc6g0h0ha7gvlw3j3im7ys4nsl9vng1wv"; depends=[cluster colourpicker config DT echarts4r ggdendro ggplot2 golem htmltools htmlwidgets plotly rlang shiny shinyAce shinycustomloader shinydashboard shinydashboardPlus shinyjs]; }; discoverableresearch = derive2 { name="discoverableresearch"; version="0.0.1"; sha256="0gw9fpmsqj1cj2qr7hqr86j28kjn3qfykdkkxrazj3dnv981xhhy"; depends=[dplyr magrittr ngram readr stopwords stringdist stringi synthesisr tm]; }; discreteMTP = derive2 { name="discreteMTP"; version="0.1-2"; sha256="13qsf1kc3rph0kkdkz31qj072www5dwjyk73lfpy141rzhcn1v1x"; depends=[]; }; @@ -8231,6 +8236,7 @@ in with self; { domino = derive2 { name="domino"; version="0.3.1"; sha256="0f67w0z5jy82kgm3l1rji430ayigw30vmmwp3i1nz0xibsx7jxv4"; depends=[]; }; domir = derive2 { name="domir"; version="0.2.0"; sha256="0zy0ymsx6m6d26szpk3h85yknqraa7gxi8765qdxjs1cajl0dgll"; depends=[]; }; donut = derive2 { name="donut"; version="1.0.1"; sha256="17qiy9j0qm2q2gcysd5717bdl9nmkd7pd5z22pcj3icvxcpssval"; depends=[]; }; + doolkit = derive2 { name="doolkit"; version="1.0.0"; sha256="0dcn4a04ch5ssa80lfjhip4sff48i6wm0mc5wj52zmkq8b24yr48"; depends=[concaveman ggplot2 igraph MASS Morpho rgl Rvcg sp tis usethis]; }; doremi = derive2 { name="doremi"; version="1.0.0"; sha256="005kp6f4jh8y1ykhri3mjnvc9w66b1a51bji574rkbxd1ans6mal"; depends=[data_table deSolve futile_logger ggplot2 gridExtra lme4 lmerTest zoo]; }; dosearch = derive2 { name="dosearch"; version="1.0.8"; sha256="1jymk03snrfmr9da7h7l9823mzlcn6y4z6ay6nzi82n08d9xmp06"; depends=[Rcpp]; }; dosedesignR = derive2 { name="dosedesignR"; version="0.2.4"; sha256="0c8rilx4afih457f9gafgijm569g366lp4wms0vhc0f9kgr1z8h3"; depends=[DoseFinding DT ggplot2 lattice latticeExtra shiny shinyjs]; }; @@ -8293,7 +8299,7 @@ in with self; { droptest = derive2 { name="droptest"; version="0.1.3"; sha256="1wlfhj6c4pb5mcybyd2bcn55y3azk7dv7d7il97qwbhl8kf59csl"; depends=[data_table]; }; drord = derive2 { name="drord"; version="1.0.1"; sha256="0xi85s6y78d54qv3cw7q72dz5kcs8cc8nyjyaxr5h6pfpzi2l8i9"; depends=[ggplot2 MASS ordinal VGAM]; }; drought = derive2 { name="drought"; version="1.0"; sha256="1rj3aycvkb0f85p12l356rlhid4zfzqkhks20x2hhwvpk8nhri8h"; depends=[copula]; }; - drpop = derive2 { name="drpop"; version="0.0.2"; sha256="01lr3xchqnd2g75k8w8p4rzbqnd5rrcjhfcr3bz7nja5j4vrq307"; depends=[dplyr gam ggplot2 janitor nnet nnls ranger reshape2 stringr SuperLearner tidyr]; }; + drpop = derive2 { name="drpop"; version="0.0.3"; sha256="1gh0w1a59070g9mmck4fp9591vfw23c5nlj3jrkxwarp4vfy1dqp"; depends=[dplyr gam ggplot2 janitor nnet nnls ranger reshape2 stringr SuperLearner tidyr]; }; drtmle = derive2 { name="drtmle"; version="1.1.0"; sha256="08a6k0nrg6mqdslwjc71583x52vnax87nbfalk98zczwvrrdwvxa"; depends=[future_apply np SuperLearner]; }; drumr = derive2 { name="drumr"; version="0.1.0"; sha256="09xi3sf424bpq10fq25j209dylfbi1lfd911r44ffadkxzvp5p1s"; depends=[audio stringr]; }; ds = derive2 { name="ds"; version="4.0"; sha256="1iic5fb27cnhsa83zg28hydrhzc01i9z0711xvk95c3gv7mbfp2p"; depends=[]; }; @@ -8369,7 +8375,6 @@ in with self; { dynplot = derive2 { name="dynplot"; version="1.1.1"; sha256="107j4cpvdy52gywaiw1pyxrpx1j2ihr101hmqghsgihm9qkmabb4"; depends=[assertthat dplyr dyndimred dynfeature dynutils dynwrap GA ggforce ggplot2 ggraph ggrepel igraph MASS patchwork purrr reshape2 tibble tidygraph tidyr vipor]; }; dynpred = derive2 { name="dynpred"; version="0.1.2"; sha256="111ykasaiznn3431msj4flfhmjvzq7dd1mnzn1wklc5ndix1pvf9"; depends=[survival]; }; dynprog = derive2 { name="dynprog"; version="0.1.1"; sha256="11zsx2c4hv7k22pw85aa01zk4r0qpzwnf73ynylkfxfbi87rda9s"; depends=[rlang]; }; - dynr = derive2 { name="dynr"; version="0.1.16-2"; sha256="0k9lvrxdwfjnwbln6lv2qhqr55xrxzkw8k6b2dx1dqz76a2qr2n7"; depends=[car deSolve fda ggplot2 latex2exp magrittr MASS Matrix mice numDeriv plyr Rdpack reshape2 stringi tibble xtable]; }; dynsbm = derive2 { name="dynsbm"; version="0.7"; sha256="169yk539vynjbn89q6vs3l3fx7hk8n3i1msa4jws5vypgljc2rir"; depends=[RColorBrewer Rcpp riverplot]; }; dynsim = derive2 { name="dynsim"; version="1.2.3"; sha256="1fk23cp2hvkn7msxrdc9cnm4pmcmhcdf3q6rwm507bniigrswnx4"; depends=[ggplot2 gridExtra MASS]; }; dynsurv = derive2 { name="dynsurv"; version="0.4-2"; sha256="0gy9q7l7k37bxm3d37adpvqa45lvr048a309jqc052f179v38mlb"; depends=[BH data_table ggplot2 nleqslv splines2 survival]; }; @@ -8441,7 +8446,7 @@ in with self; { ecespa = derive2 { name="ecespa"; version="1.1-13"; sha256="0a8s923xzw6wkl9240mqsr7lpvjmi20kqn2zsbax3rrrdf4gqfkx"; depends=[spatstat spatstat_core spatstat_geom]; }; ech = derive2 { name="ech"; version="0.1.1.2"; sha256="1mw68dkm6n6zj27rmyw33gaha1nly1srr6v1d5iib72b1gwnik8l"; depends=[assertthat curl dplyr fs geouy glue haven janitor labelled laeken purrr readxl rlang srvyr statar stringr survey tidyr]; }; echarts4r = derive2 { name="echarts4r"; version="0.4.2"; sha256="1mv080bcprskzhc778ccd5yvrp48fawdjah0hwj795cz72603jd3"; depends=[broom corrplot countrycode dplyr htmltools htmlwidgets jsonlite purrr rstudioapi scales shiny]; }; - echarty = derive2 { name="echarty"; version="1.4.0"; sha256="09j7kkkfwjl817k9wbl872ix0cs2973lvmd4az4fns565nhb4wdy"; depends=[dplyr htmltools htmlwidgets jsonlite magrittr]; }; + echarty = derive2 { name="echarty"; version="1.4.1"; sha256="1fzyjvjdcds5fbcgmd6v143pfl52ac6jq2ic0p8yaplg43gwdrcr"; depends=[dplyr htmltools htmlwidgets jsonlite shiny]; }; echelon = derive2 { name="echelon"; version="0.1.0"; sha256="0dw15igx8jwgfr1f7p5pspxjiqhqmfp7shdhq8g07f4bj76irzm4"; depends=[]; }; echo_find = derive2 { name="echo.find"; version="4.0.1"; sha256="1nadqqpxgx2ck16nzjp5ajm6714452qzllg5cq1jpisv1yb31db2"; depends=[boot minpack_lm]; }; echogram = derive2 { name="echogram"; version="0.1.2"; sha256="0kir7x32fk3fc63kr3b2j0hfkmivs2pwrlxyjvdg7xqc59hjp3ma"; depends=[geosphere readHAC]; }; @@ -8755,6 +8760,7 @@ in with self; { essHist = derive2 { name="essHist"; version="1.2.2"; sha256="0rvlxfcl42h4pjqf37mx7bc4k21iwvnys6l5rf2jsl7yk1b9hmbn"; depends=[Rcpp]; }; essentials = derive2 { name="essentials"; version="0.1.0"; sha256="163wv4szfanbpiw5f6lhw1dnns5prql43iz27zgcp5z2rsxlb894"; depends=[]; }; essurvey = derive2 { name="essurvey"; version="1.0.7"; sha256="07z6bdk76528cg5pdchh1kcsm7xrhpqzzxm2llyh0y12fa7mwscy"; depends=[haven httr rvest tibble xml2]; }; + estadistica = derive2 { name="estadistica"; version="0.1.0"; sha256="1xhxy4nzpv5qw6nfg8zrhh6lvcrwz2kf793safah4snfqir0qx6w"; depends=[data_table dplyr ggplot2 magrittr plotly rio shiny shinydashboard tidyr tidyverse]; }; estatapi = derive2 { name="estatapi"; version="0.4.0"; sha256="0wp5w9w0b832fnl7kchjqmychnf5896q50grw8hwdc1km14dfzkg"; depends=[dplyr httr purrr readr rlang tibble]; }; estimability = derive2 { name="estimability"; version="1.3"; sha256="0cifdaa71spkcxl4db4z884jrya865sg3dhcv4isd8fnzg2pjcd3"; depends=[]; }; estimatr = derive2 { name="estimatr"; version="0.30.2"; sha256="0sdsfngxckcis2gfd2jz1dq8vlh7zcf592xqlglbv14755s348z2"; depends=[Formula generics Rcpp RcppEigen rlang]; }; @@ -8966,7 +8972,7 @@ in with self; { fam_recrisk = derive2 { name="fam.recrisk"; version="0.1"; sha256="1lyrq7bq7p7ijc2vf545nazw4akncz08548ya1dv3lsc5jmkgfzj"; depends=[]; }; fam2r = derive2 { name="fam2r"; version="1.2"; sha256="0pq5cmzwk3s8cz5x8dsfb2d6qfpapkrwbzvkqmqkhcwhwryy40mm"; depends=[Familias paramlink]; }; famSKATRC = derive2 { name="famSKATRC"; version="1.1.0"; sha256="1xbh0by4sjxrmy00v1svcj3lb98p9krpncbhpjbli1jd2p47yk60"; depends=[bdsmatrix CompQuadForm coxme kinship2]; }; - fame = derive2 { name="fame"; version="2.21"; sha256="15pcgc67qcg6qkgssbfissicic317v60jsybp86ryqvzqg70cqx3"; depends=[tis]; }; + fame = derive2 { name="fame"; version="2.21.1"; sha256="18lzf2vxyzlmd73m9q0si663mjjm66nrf7q1iy0fw73gpvxqr9bf"; depends=[tis]; }; fanc = derive2 { name="fanc"; version="2.2"; sha256="1gdkxb2ay0lyldjpg4s2fbavjxl4q1bf9q438csqa4vzl5ywv2w8"; depends=[Matrix]; }; fancycut = derive2 { name="fancycut"; version="0.1.2"; sha256="1xg5qjxf77g10h07x6rvb8c3klc9gbr77bkw352qpas268pkswl2"; depends=[]; }; fanovaGraph = derive2 { name="fanovaGraph"; version="1.5"; sha256="1hffda52yk24slbgsfdgkpg3vsryfnhlw09r39cbyz483i7xd8d0"; depends=[DiceKriging igraph sensitivity]; }; @@ -9063,7 +9069,7 @@ in with self; { fdakma = derive2 { name="fdakma"; version="1.2.1"; sha256="0j9qgblrl7v4586dd6v0hjicli6jh8pkk5lzn8afpl75xfs24six"; depends=[]; }; fdaoutlier = derive2 { name="fdaoutlier"; version="0.2.0"; sha256="1jpd9mszd0grn7rwi3dmgl6l5dggwsnz1kyljz2gcfm2wck2zhbz"; depends=[MASS]; }; fdapace = derive2 { name="fdapace"; version="0.5.7"; sha256="0mmdfp27a7j0hvziir8b2dybifrkahhcinnqf84xa8pp24w0v7mv"; depends=[Hmisc MASS Matrix numDeriv pracma Rcpp RcppEigen]; }; - fdapaceShiny = derive2 { name="fdapaceShiny"; version="1.0.1"; sha256="0fs4gzpipxk54m5m1ikjxz1g5pah0rm0a1rmfs7ndwvynph7nmz9"; depends=[attempt bs4Dash config data_table dplyr DT fdapace ggplot2 glue golem htmltools magrittr pkgload plotly processx purrr reshape2 shiny shinyjs shinyWidgets stringr thinkr tidyr]; }; + fdapaceShiny = derive2 { name="fdapaceShiny"; version="1.0.3"; sha256="02b5xpxw2fc82jpglbdrwr3g2sdssazhsl3s1qa853xpvh09233v"; depends=[bs4Dash config dplyr DT fdapace ggplot2 golem htmltools magrittr plotly purrr reshape2 shiny shinyjs shinyWidgets stringr tidyr]; }; fdasrvf = derive2 { name="fdasrvf"; version="1.9.7"; sha256="06kq9rlszydr55sg17yybwa89qd4d1826jyw4kmx4aligx7ycqq6"; depends=[coda doParallel fields foreach lpSolve Matrix matrixcalc mvtnorm Rcpp RcppArmadillo testthat tolerance viridisLite]; }; fdatest = derive2 { name="fdatest"; version="2.1"; sha256="0zdnmssir5jz2kbfz4f4xshjfv4pivqx7cbh2arlx6ypkjrjws8n"; depends=[fda]; }; fdcov = derive2 { name="fdcov"; version="1.1.0"; sha256="0savsgcifcjjqrmbpn6m30gncq5iigqxpb19l710wlx8nm98svjh"; depends=[corrplot matlab]; }; @@ -9108,7 +9114,7 @@ in with self; { ffscrapr = derive2 { name="ffscrapr"; version="1.4.6"; sha256="02radzd5bcavbhgy842bgxbp33db87sxpqvxnff46kz6v6xbw7wm"; depends=[cachem checkmate dplyr glue httr jsonlite lifecycle lubridate magrittr memoise nflreadr purrr rappdirs ratelimitr rlang stringr tibble tidyr]; }; ffsimulator = derive2 { name="ffsimulator"; version="1.1.0"; sha256="0mzas3hx6nj2q2lidkmrnh3mfz8w0s9r58j7vy39sfaq8h9qqyly"; depends=[checkmate cli data_table ffscrapr glue magrittr nflreadr Rglpk rlang tidytable]; }; ffstream = derive2 { name="ffstream"; version="0.1.6"; sha256="036ikhah4y85khgfmvxwsn3vavvw1is8i9k2lw474wxlh4cxa3kd"; depends=[Rcpp]; }; - fftw = derive2 { name="fftw"; version="1.0-6"; sha256="1kkhn79x3akp2v28aqmif0dd2fn1pw145fjgyy29i4ab6pngazir"; depends=[]; }; + fftw = derive2 { name="fftw"; version="1.0-6.1"; sha256="1s16r8qr1w85k5i0wfj4gc3cnwqg3yx2nbk9mcfb3j95jx7jphzz"; depends=[]; }; fftwtools = derive2 { name="fftwtools"; version="0.9-11"; sha256="0zrchp4l0jdbir2gibjf00x225y9giqk80zvqmr2yyvc12lwkw7i"; depends=[]; }; fgac = derive2 { name="fgac"; version="0.6-1"; sha256="0paddf5a4w0g2i0ay7my0bppwh534d8ghy6csfxl5jj034xjgwkk"; depends=[]; }; fgdr = derive2 { name="fgdr"; version="1.1.0"; sha256="0xllws7z3crbwibyhm3w06zagvlbmn3rcy8ccgkdhl0am3q7dz0a"; depends=[data_table jpmesh magrittr purrr raster readr rlang sf stars stringr terra tibble units xml2]; }; @@ -9335,6 +9341,7 @@ in with self; { fracdist = derive2 { name="fracdist"; version="0.1.1"; sha256="0ssg8h1mvkzpwq4dn9fdxjg1vzhcv6606wsy0xrm1wz9p6s5rx74"; depends=[]; }; fracprolif = derive2 { name="fracprolif"; version="1.0.7"; sha256="124p5x59smqf8ba0xwhlq69w77zga2bv9plzwkadf700lzvaj2wx"; depends=[emg numDeriv]; }; fractD = derive2 { name="fractD"; version="0.1.0"; sha256="1cnp8qrc6jpdj0grwkvn5jkdymjfhg5ybbhqvknxirc4g981q8bj"; depends=[imager plyr]; }; + fractalRegression = derive2 { name="fractalRegression"; version="1.0"; sha256="0lkxm3f9xz1c4kc81rfhd521q9jzsdb3ngrgn7nsawllpi2zrgwb"; depends=[Rcpp RcppArmadillo]; }; fractaldim = derive2 { name="fractaldim"; version="0.8-5"; sha256="1hi5xzya528947wfb50brl00m6n6krv4sn5nzga285nncf6xprhh"; depends=[abind]; }; fractional = derive2 { name="fractional"; version="0.1.3"; sha256="1jz83y53s0xdphh1z3v3z7xhcmhx7rp0iiazw2vdsx2747r3rirn"; depends=[Rcpp]; }; fracture = derive2 { name="fracture"; version="0.2.0"; sha256="18dyq1g9b8gpac5xjry9hkmql5fmwyyghkmrrgkrrvy42q8ygn91"; depends=[Rcpp]; }; @@ -9401,7 +9408,7 @@ in with self; { ftnonpar = derive2 { name="ftnonpar"; version="0.1-88"; sha256="0df9zxwjpfc939ccnm1iipwhpf76b34v0x74nsi1mm1g927dfl0i"; depends=[]; }; ftrCOOL = derive2 { name="ftrCOOL"; version="1.1.2"; sha256="08s1k47hjfgizfxpqlkqdir9pkhalqp3j9w047ll3wzx3jjx0jgn"; depends=[]; }; fts = derive2 { name="fts"; version="0.9.9.2"; sha256="08pwhi19db173d4nsk5rl8xa8qmaddj4bn3cjxb8ql4kny59i57q"; depends=[BH zoo]; }; - ftsa = derive2 { name="ftsa"; version="6.0"; sha256="06g6qmz7qagm0izvq5d85h0hy851idpk7wi1hapw8xcl596irgf6"; depends=[colorspace e1071 ecp fda forecast MASS pcaPP pdfCluster rainbow sde strucchange]; }; + ftsa = derive2 { name="ftsa"; version="6.1"; sha256="0j8jr0sbvxfzqfy8va7axljp660jkpqwg9djbis9ikf4x9n9f7n9"; depends=[boot colorspace e1071 ecp evgam fda fdapace fGarch forecast glue KernSmooth LaplacesDemon MASS pcaPP pdfCluster psych rainbow ROOPSD sde strucchange vars]; }; ftsspec = derive2 { name="ftsspec"; version="1.0.0"; sha256="12f9yws1r26i240ijq0xqprl3pgbw50wv68jsm75ycplbs2jsyhs"; depends=[sna]; }; fuel = derive2 { name="fuel"; version="1.2.0"; sha256="0pzb77g6l8cz5p7y6czck23kp7hs5zp78k87b5yh0avjlr7ads74"; depends=[]; }; fueleconomy = derive2 { name="fueleconomy"; version="1.0.0"; sha256="16a8wyliiidi6rw14ksimygfkl4a7yhxvss7l9bcvr1wfiplrn65"; depends=[]; }; @@ -9457,7 +9464,7 @@ in with self; { fuzzyjoin = derive2 { name="fuzzyjoin"; version="0.1.6"; sha256="0s5rhqz8vih4za3a8k1k7i3gq8hj0w7bqnakw40k6mg87jvyzsj7"; depends=[dplyr geosphere purrr stringdist stringr tibble tidyr]; }; fuzzywuzzyR = derive2 { name="fuzzywuzzyR"; version="1.0.5"; sha256="1g73xivxyh5fvppccgnxhgar6jsl6zsr2djkg0bhh10i633l56ia"; depends=[R6 reticulate]; }; fwi_fbp = derive2 { name="fwi.fbp"; version="1.7"; sha256="1wk9cr0kk6zkbf111bv87n7b1wwx1qrsbjxydvbjvy8bgz0nfa62"; depends=[]; }; - fwildclusterboot = derive2 { name="fwildclusterboot"; version="0.4"; sha256="1ac8rbkkplbhyr5l4qvrha15dygsgagss8vi9xavy1j8kam8b8wm"; depends=[collapse dreamerr Formula generics gtools Matrix Matrix_utils Rcpp RcppEigen]; }; + fwildclusterboot = derive2 { name="fwildclusterboot"; version="0.5"; sha256="1f0ayrfaccv3b831qaydfia1w8w3br00fpgkra3lannh5ql8zch4"; depends=[collapse dqrng dreamerr Formula generics gtools Matrix Matrix_utils Rcpp RcppEigen]; }; fwsim = derive2 { name="fwsim"; version="0.3.4"; sha256="0fy87c1x5hihfcppv1pvk3b0pwl6ygqpka40x55gbpkgssdigb1l"; depends=[Rcpp]; }; fxTWAPLS = derive2 { name="fxTWAPLS"; version="0.0.7"; sha256="0pfp64qi0mnxsf0pmgi5pafalzp997q6wx9fhkk04llzcj9ppdl8"; depends=[doFuture foreach future geosphere ggplot2 JOPS MASS progressr]; }; fxregime = derive2 { name="fxregime"; version="1.0-4"; sha256="0ml1q0xp90jfng6a60pfkp6j7wajk6pz4p4wm08rfqikgsdvp0m4"; depends=[car sandwich strucchange zoo]; }; @@ -9595,7 +9602,7 @@ in with self; { gdtools = derive2 { name="gdtools"; version="0.2.3"; sha256="1p3ip0qwpg8f63jfx0b8vbac6l20ddid8xvxzkfi6i858pybnawp"; depends=[Rcpp systemfonts]; }; gdxdt = derive2 { name="gdxdt"; version="0.1.0"; sha256="1yrjixq4srmaiy5iaprix4096yhf3ldyklgjag4kxd3l5acwap4h"; depends=[data_table]; }; gear = derive2 { name="gear"; version="0.3.4"; sha256="0ibn2kr0rjj546cbcqhr6x69s25xh7si5fri59055j42g62mdnxy"; depends=[autoimage optimx Rcpp]; }; - geckor = derive2 { name="geckor"; version="0.1.1"; sha256="0rhhj6z8az8d3r94xvnjlvz9frjkaah2047h9gcycfplx3ripf0y"; depends=[dplyr httr jsonlite knitr lifecycle magrittr rlang tibble tidyr tidyselect]; }; + geckor = derive2 { name="geckor"; version="0.2.0"; sha256="06infn0icgsa10szsc8bqams57swx6a4ch3a1n2a68rp8q2f6lw2"; depends=[curl dplyr httr jsonlite knitr lifecycle magrittr rlang tibble tidyr tidyselect]; }; gee = derive2 { name="gee"; version="4.13-20"; sha256="167pzgnmj4cjc41ykps1mfwi6s7y32zxyycn5z17vn4v0pp4q0ak"; depends=[]; }; geeCRT = derive2 { name="geeCRT"; version="0.1.1"; sha256="1dwll5k99mj1a6nakxzihk87dvnqfsymly7kn1b8wkrfpljhrj4v"; depends=[MASS mvtnorm rootSolve]; }; geeM = derive2 { name="geeM"; version="0.10.1"; sha256="1r9zyjv7r7r7avdqi54dvczf971frz8pgrs1a04kan5mh4ls6xpy"; depends=[Matrix]; }; @@ -9704,7 +9711,7 @@ in with self; { geometry = derive2 { name="geometry"; version="0.4.5"; sha256="1n10l8ax3783v3lgaacb15qsn8b3f0wpmhg3k39j31s6ciyd3vcg"; depends=[linprog lpSolve magic Rcpp RcppProgress]; }; geomorph = derive2 { name="geomorph"; version="4.0.1"; sha256="05qiqyrc0vn1hi8g4hfs6hcysar3yqkw9r6hr3fg5f6qdnlznm4x"; depends=[ape ggplot2 jpeg Matrix rgl RRPP]; }; geonames = derive2 { name="geonames"; version="0.999"; sha256="0yz1b7y3vwa4izrhpry4n3iwzb7y67s5p3kgnd7d29cl5pcbpmqx"; depends=[rjson]; }; - geonapi = derive2 { name="geonapi"; version="0.4"; sha256="045lrj5qmd3m2ja8i9446d7vz8lmdz8wvm4f3a72cm18xaan1m2p"; depends=[geometa httr keyring openssl R6 XML]; }; + geonapi = derive2 { name="geonapi"; version="0.5"; sha256="10pj56bwwd8bfwwfyvijdk4xr0pgbz4sdkis3d6zr56lay91x7fv"; depends=[geometa httr keyring openssl R6 XML]; }; geonet = derive2 { name="geonet"; version="0.6.0"; sha256="0zav0r4q8i8mxwnr3a7j2ldprfb979pmcx76ssks4p6cfqp0syj4"; depends=[dplyr ggplot2 igraph Matrix mgcv spatstat_core spatstat_geom spatstat_linnet]; }; geonetwork = derive2 { name="geonetwork"; version="0.4.1"; sha256="04vf39hxl1a2kbgqc054xg9w6hbd3fwag6sy0j8a9agrd5wgks7h"; depends=[geosphere igraph rgdal sf sp]; }; geophys = derive2 { name="geophys"; version="1.4-1"; sha256="1s64sbr0chv0z2vaw059khfkv8iga1kr6428kkglgafq5x2d6h3q"; depends=[cluster GEOmap RFOC RPMG RSEIS]; }; @@ -9730,7 +9737,7 @@ in with self; { gepaf = derive2 { name="gepaf"; version="0.1.1"; sha256="0n36w40jrq3qkgmhz9wrnhp6fczw7bm96g950sa4nq33872xhfgm"; depends=[bitops]; }; gerbil = derive2 { name="gerbil"; version="0.1.5"; sha256="1rvf7z7zj04p2faj41fxxjs20bd3ghr6fbzkkapcx48fr4j9skj2"; depends=[DescTools lattice MASS mvtnorm openxlsx pbapply truncnorm]; }; germinationmetrics = derive2 { name="germinationmetrics"; version="0.1.5"; sha256="1gazx0k4nhb9xsyqi0zxdzg9a0kfvf7g1gka7lgaj2f3bpyk0gd3"; depends=[broom data_table ggplot2 ggrepel mathjaxr minpack_lm plyr Rdpack]; }; - gert = derive2 { name="gert"; version="1.4.1"; sha256="1y3318whcifdng87wyngfjq18601zrlj4d8sx40v2c2m5kqmhfv2"; depends=[askpass credentials openssl rstudioapi sys zip]; }; + gert = derive2 { name="gert"; version="1.4.2"; sha256="01h6bpqs66c25d7mria5s2iskddx6jrds6p49larsxdjgi2zbrm1"; depends=[askpass credentials openssl rstudioapi sys zip]; }; gesca = derive2 { name="gesca"; version="1.0.4"; sha256="1ndn8wgp22pr017x6v7jw8jy4gd06x8110qa860hw8i6pn47wfwv"; depends=[]; }; gesisdata = derive2 { name="gesisdata"; version="0.1.0"; sha256="02xjpw41gm3778lj01kcwjx0lr1i95a0wlrfvs0r5xlajq13jr67"; depends=[dplyr magrittr rio RSelenium stringr]; }; gesso = derive2 { name="gesso"; version="1.0.1"; sha256="0s9vlh47v4dz8dwq5v6j7vbcs01g701ci1qkb0b26m7zksb4ra58"; depends=[BH bigmemory dplyr Matrix Rcpp RcppEigen RcppThread]; }; @@ -9744,6 +9751,7 @@ in with self; { getProxy = derive2 { name="getProxy"; version="1.12"; sha256="0qcxihgwy3h2b98z2hwjszwqbz117d89xjys7fy0f8m9hv7rf6ph"; depends=[bitops data_table dplyr httr jsonlite RCurl]; }; getable = derive2 { name="getable"; version="1.0.3"; sha256="0v45nqpx55vbj68gj4wxr0bdlrl897ayac78rxjd2lkkjx49hlyh"; depends=[knitr]; }; gethr = derive2 { name="gethr"; version="0.1.0"; sha256="0kpi9b9yg2nh332zkml24pmj6vgjfh8mrfjjg5a636s2rg98g5g7"; depends=[httr jsonlite]; }; + getip = derive2 { name="getip"; version="0.1-0"; sha256="0l7692ddgidy3jyg7mw5nnh0agkyj7pf8v8clcinzs2y3q5qic6f"; depends=[]; }; getlandsat = derive2 { name="getlandsat"; version="0.2.0"; sha256="15450v93lc4i2qda0zlb5vplwbarkmf3f6sb4rlrdpv9vlj85hff"; depends=[crul data_table rappdirs readr tibble xml2]; }; getmstatistic = derive2 { name="getmstatistic"; version="0.2.2"; sha256="100m5cbwx9anlh1hzjv7d1h1viqsxb0bx0ksc1dsjx3gqrf77q1n"; depends=[ggplot2 gridExtra gtable metafor psych stargazer]; }; getopt = derive2 { name="getopt"; version="1.20.3"; sha256="0zzmzgwl9a4y3s34600vmih22d6y32294f9bvxrnmffnvkgmy7sk"; depends=[]; }; @@ -9880,7 +9888,7 @@ in with self; { ggrepel = derive2 { name="ggrepel"; version="0.9.1"; sha256="1z5xyr5f4aryy0v1gzz9m8m4s5fzzwbrf0fxll1nbflr8xnr3yr9"; depends=[ggplot2 Rcpp rlang scales]; }; ggridges = derive2 { name="ggridges"; version="0.5.3"; sha256="0bmlqy1p6rac90af97ffpdi6php7dblx66l2hcm8ljidgyqzmspm"; depends=[ggplot2 plyr scales withr]; }; ggrisk = derive2 { name="ggrisk"; version="1.3"; sha256="02df3gcviax747d33v30m97jsazj7zdpjnhypfy38cg70yxidwg9"; depends=[cutoff do egg ggplot2 nomogramFormula reshape2 rms set survival]; }; - ggroups = derive2 { name="ggroups"; version="2.1.0"; sha256="02x62dzpmisk224hs4kgmcc0r6pd87zvjnpdw1sm7rckhi5b56q2"; depends=[]; }; + ggroups = derive2 { name="ggroups"; version="2.1.1"; sha256="0qzz3klwvzz5040d5hhzgz7cx7s21m2pdxh8224h7knghrm7d5y6"; depends=[]; }; ggsci = derive2 { name="ggsci"; version="2.9"; sha256="0g73x6grbka7ahjh6z23m3wrcifp5rdfdiasbl8lq4sp6rplxwaa"; depends=[ggplot2 scales]; }; ggseas = derive2 { name="ggseas"; version="0.5.4"; sha256="1jpdijwll5l7bg7cmjnklkxffysi9ckzg50rw2a2cd00zwby11q9"; depends=[ggplot2 rlang seasonal zoo]; }; ggseg = derive2 { name="ggseg"; version="1.6.4"; sha256="0x6vjsdkkrdnxi4a4dzcbadpqmmn0058i980s0a8456hwqlld7s5"; depends=[dplyr ggplot2 sf tidyr vctrs]; }; @@ -9904,7 +9912,7 @@ in with self; { ggtern = derive2 { name="ggtern"; version="3.3.5"; sha256="15hhn8msy0l8zbq8ms0zvg1iajn1c28gd77v3hp6dvwwsla8zzbd"; depends=[compositions ggplot2 gridExtra gtable hexbin latex2exp lattice MASS plyr proto scales]; }; ggtext = derive2 { name="ggtext"; version="0.1.1"; sha256="0n19dlcys8v7myfyckr6dnq0kx79k3sbh8nwx1jsx8pgzfbi8a2b"; depends=[ggplot2 gridtext rlang scales]; }; ggthemes = derive2 { name="ggthemes"; version="4.2.4"; sha256="0rw5f6axyz1pqn6qx9jwm38hjzn8bqs1nfjkvm96z3xnyn61cdbv"; depends=[ggplot2 purrr scales stringr tibble]; }; - ggtikz = derive2 { name="ggtikz"; version="0.0.1"; sha256="15nq9prfn3h3cv5s6fnr1hcsdr792phwdn4fjixzw1vjm5hks41r"; depends=[dplyr ggplot2 tikzDevice]; }; + ggtikz = derive2 { name="ggtikz"; version="0.1.0"; sha256="1bgvpdnyy2gsm0yzs5z6jbjpxnnj3mijiyq2d2q0414ky3vpcxsw"; depends=[dplyr ggplot2 tikzDevice]; }; ggupset = derive2 { name="ggupset"; version="0.3.0"; sha256="079a1fghhbxhkx42ac0n5chmh07i60m2pkdk76frqbbmwrw7inx4"; depends=[ggplot2 gtable rlang scales tibble]; }; ggvenn = derive2 { name="ggvenn"; version="0.1.9"; sha256="0bm52j3idchignp6nrw7c76jlbfkjf5zng258957vq019vx9qxrq"; depends=[dplyr ggplot2]; }; ggversa = derive2 { name="ggversa"; version="0.0.1"; sha256="0xqn8iznrm8q30pxwka88wi1z7lndi6lm12rq6ngcaxf294fbz01"; depends=[]; }; @@ -9956,7 +9964,7 @@ in with self; { glasso = derive2 { name="glasso"; version="1.11"; sha256="02p3612rpydk195n2qr77lp1j2w8zsw1ckkk98c8angm4r5q8dsc"; depends=[]; }; glassoFast = derive2 { name="glassoFast"; version="1.0"; sha256="1sgmh4l06q7mrmgnimphpqgix4k4jzaj2l30kpmnf92caa2v7ngw"; depends=[]; }; glba = derive2 { name="glba"; version="0.2"; sha256="0ckcz6v6mfbv34s8sp086czhb5l58sky79k84332rrz6wj47p3md"; depends=[]; }; - glca = derive2 { name="glca"; version="1.3.1"; sha256="1bbny1r40i2lk0b0zh3rpssmbpwhkcl4fkq5d9ghk449yw0c72mm"; depends=[MASS Rcpp]; }; + glca = derive2 { name="glca"; version="1.3.3"; sha256="1fgbwgn2v7l7ikwl88fkzvikhzb5hgwlawly50rml5w8jcfm0nkz"; depends=[MASS Rcpp]; }; glcm = derive2 { name="glcm"; version="1.6.5"; sha256="13my6y9jqd86cg5n74p4b8mqbdgwnanxx4qf1rrhm5jxf6sa31qm"; depends=[raster Rcpp RcppArmadillo]; }; gld = derive2 { name="gld"; version="2.6.2"; sha256="1wrw7i5bq7rb2ahadm57y9fmr697r7lp9ln7ajcd592b0nn60n4i"; depends=[e1071 lmom]; }; gldrm = derive2 { name="gldrm"; version="1.5"; sha256="1mbdxqjw6sa47kigwrjq1gn6vi36zhg9j2lck144iwa10ms0y9xp"; depends=[]; }; @@ -9982,7 +9990,8 @@ in with self; { glmmTMB = derive2 { name="glmmTMB"; version="1.1.2.3"; sha256="1yfwwz2dhd34vgagg8hi7irkqw8padavbc7337jdiwgk3w01wqsm"; depends=[lme4 Matrix nlme numDeriv RcppEigen TMB]; }; glmmfields = derive2 { name="glmmfields"; version="0.1.4"; sha256="0gnb2s34xz7cjyaa2w2wq7n6c5016a14mc03kalvwdv3f7b98zan"; depends=[assertthat BH broom broom_mixed cluster dplyr forcats ggplot2 loo mvtnorm nlme Rcpp RcppEigen reshape2 rstan rstantools StanHeaders tibble]; }; glmmsr = derive2 { name="glmmsr"; version="0.2.3"; sha256="1fbg5zji0xjr9q1yc6phsp37nsrj7nfs8yiri0j9s84wzgwjili1"; depends=[BH lme4 Matrix numDeriv R6 Rcpp RcppEigen]; }; - glmnet = derive2 { name="glmnet"; version="4.1-2"; sha256="1kfd8kfhapx2cxw6qnkbs502c3kya4pd9qmf0mk76cdlq1c2paq6"; depends=[foreach Matrix shape survival]; }; + glmnet = derive2 { name="glmnet"; version="4.1-3"; sha256="0nij8v44b5dvp1vc843sfkl9ds83n6g687m2p37q1rdn82m3bg34"; depends=[foreach Matrix Rcpp RcppEigen shape survival]; }; + glmnetSE = derive2 { name="glmnetSE"; version="0.0.1"; sha256="0qj3c8qrx3vl0dr9prravfjwzqv1yfi771xfss9d44wlvjz5f4gp"; depends=[boot glmnet]; }; glmnetUtils = derive2 { name="glmnetUtils"; version="1.1.8"; sha256="1k8ivzjgpkm2a948qxx3wmkhlppbk31qc76spv2pscmp24x0lxyn"; depends=[glmnet Matrix]; }; glmnetcr = derive2 { name="glmnetcr"; version="1.0.6"; sha256="0cs0yj2js0920iggcw2vci5y9hnsm3hd7wpd7mwnx8mszwrklawg"; depends=[glmnet]; }; glmpath = derive2 { name="glmpath"; version="0.98"; sha256="1jbiqqd1s93i941dhyyx50zlgwavhyjfw8bx13z4gz05rdvi4gn8"; depends=[survival]; }; @@ -10022,7 +10031,7 @@ in with self; { gmm = derive2 { name="gmm"; version="1.6-6"; sha256="16vkb472bjlfccfpl94mz772nbyf76wkwb2shai18jja3fnj3cxi"; depends=[sandwich]; }; gmnl = derive2 { name="gmnl"; version="1.1-3.2"; sha256="01pviab3gyvjdlv5jy7wzp33909znhpn47kar55bwkm6gm3bdlg8"; depends=[Formula maxLik mlogit msm plotrix truncnorm]; }; gmodels = derive2 { name="gmodels"; version="2.18.1"; sha256="0s8kd8krqk4kwv2zqxpsfy3w8qdwf5naf4b5l383vidq9sil0qb2"; depends=[gdata MASS]; }; - gmp = derive2 { name="gmp"; version="0.6-2"; sha256="03kzbflgpy5sgnzxmhshs5qv7jjmfc113ybkhxys4z8y7xdv9z3b"; depends=[]; }; + gmp = derive2 { name="gmp"; version="0.6-2.1"; sha256="1mj7hy6riaxl9n4q2cnyyjazwad90xbjszk25si968618rih4n64"; depends=[]; }; gms = derive2 { name="gms"; version="0.4.0"; sha256="1m7bhy4vsz6l09pal9ibjlskmbyjmc29hqwjim1x8yansd5bxpzv"; depends=[dplyr rlang stringr yaml]; }; gmt = derive2 { name="gmt"; version="2.0.2"; sha256="0z5abh0kw97y90nxkkxxg2xgv1avxijf71v88lwhy25jgv8r7b38"; depends=[]; }; gmvarkit = derive2 { name="gmvarkit"; version="1.5.0"; sha256="1b1c7ppmvns72rk37d7nav6h38hyr6qaqrl0f7j4fh1pz9w377kh"; depends=[Brobdingnag mvnfast pbapply]; }; @@ -10090,7 +10099,7 @@ in with self; { gpx = derive2 { name="gpx"; version="1.0.1"; sha256="0p7fcqswd9swsscf0pjza7jmvwc25k2hrbdhb42hy90q28rdpmqm"; depends=[lubridate rvest xml2]; }; gqlr = derive2 { name="gqlr"; version="0.0.2"; sha256="0gzhqyrbnz3qjzkr4slryrlfhlaxm474y9fahlj0sb0hvcx68pxj"; depends=[graphql jsonlite magrittr pryr R6]; }; gquad = derive2 { name="gquad"; version="2.1-1"; sha256="19k7cqp2j5vb6m9hxdm951wfjh6nsswb64pdz9g93ypcqrg02wa4"; depends=[ape seqinr]; }; - grImport = derive2 { name="grImport"; version="0.9-4"; sha256="0y9lsvfp1350das5v5d5pkv10z0n1crc7k4zn9inr94f9s4kjjr5"; depends=[XML]; }; + grImport = derive2 { name="grImport"; version="0.9-5"; sha256="0pbzc45wgp0cpycnw0bzn65ckdszzay0zrp7c7ssxdkifp8bai3a"; depends=[XML]; }; grImport2 = derive2 { name="grImport2"; version="0.2-0"; sha256="19q0dd8fpp1g4xf6sg5f8dxybwxjfw553ra6wgjd8b74fzca40m1"; depends=[base64enc jpeg png XML]; }; grabsampling = derive2 { name="grabsampling"; version="1.0.0"; sha256="031a4ak84k2mbhrmjbai3q8qnf2z3d9rp0xra67x74a99av9lzs9"; depends=[extraDistr ggplot2 ggthemes plyr reshape2]; }; gradDescent = derive2 { name="gradDescent"; version="3.0"; sha256="1jxgvnjw9qk5bkb0fw4kyks4vb9d1933jn79ry0w6956mq2xbb79"; depends=[]; }; @@ -10191,11 +10200,12 @@ in with self; { gsbDesign = derive2 { name="gsbDesign"; version="1.0-2"; sha256="1q958l9f03lk0wpcgqxqwcbj6jlgkmj6vj4gyj51pp8kfkxal59x"; depends=[gsDesign lattice]; }; gsbm = derive2 { name="gsbm"; version="0.2.1"; sha256="16j4g0wl9phmx85dbrzxsdjcv0nnipgj214fvbz9m6n66khr5pkp"; depends=[doParallel foreach Matrix RSpectra softImpute]; }; gscaLCA = derive2 { name="gscaLCA"; version="0.0.5"; sha256="12zksjp0wh95qg7vxh22z652hk35r9sp0qxrms4y1laixa8vr71x"; depends=[devtools doSNOW fastDummies fclust foreach ggplot2 gridExtra MASS nnet progress psych stringr]; }; + gscounts = derive2 { name="gscounts"; version="0.1-4"; sha256="1wcna4bcm38ivmys5hv30b72bvn0ja0n30zhwns94n4v2z1d24k4"; depends=[Rcpp]; }; gset = derive2 { name="gset"; version="1.1.0"; sha256="1gingqw6la8n7mnl47wpz9sicxca4zi2m8p35n6cnihrniibhajc"; depends=[Hmisc MCMCpack mvtnorm]; }; gsheet = derive2 { name="gsheet"; version="0.4.5"; sha256="0b8q44cqkjfy6vnffm94czq4ag8xfbxik52026ahq95kcf9v2j91"; depends=[httr stringr]; }; gsignal = derive2 { name="gsignal"; version="0.3-2"; sha256="1yw3srky82wqwvbjdfdd718ay965qnrwq7lnflzdg1j0f7nxj6iw"; depends=[pracma Rcpp]; }; gsisdecoder = derive2 { name="gsisdecoder"; version="0.0.1"; sha256="1h7a9j4gsdk8nasfkzfizlarx335ra0j0yz98a2000v2qzm2a5qy"; depends=[Rcpp]; }; - gsl = derive2 { name="gsl"; version="2.1-7"; sha256="05rvky8sh3jrlz0xbd6nss8h8ykfg1v10dymhlmcykl6v5csz1hs"; depends=[]; }; + gsl = derive2 { name="gsl"; version="2.1-7.1"; sha256="118rj9kjx9rzlynvhrly19qz3yxg8jzws35971ssgzrp5lwd367f"; depends=[]; }; gslnls = derive2 { name="gslnls"; version="1.0.2"; sha256="0vdw6iqh03km1s59piwr77a1yrignxlb48vr3871j061yna8ijdq"; depends=[]; }; gsloid = derive2 { name="gsloid"; version="0.1.0"; sha256="1ma5si86ynfsis0pnw8hyv6xc4frbkhy5ks03mr0z16gasffkycg"; depends=[]; }; gsmoothr = derive2 { name="gsmoothr"; version="0.1.7"; sha256="00z9852vn5pj04dhl3w36yk0xjawniay6iifw1i7fd8g98mgspxp"; depends=[]; }; @@ -10263,8 +10273,6 @@ in with self; { hadron = derive2 { name="hadron"; version="3.1.2"; sha256="04qd3lb6im5shf24ss88jkskab1rwn7m2d94x0ybbmfcg3l5dhm0"; depends=[abind boot dplyr R6 Rcpp stringr]; }; hagis = derive2 { name="hagis"; version="3.1.3"; sha256="1x2vnym7da8kbj3ifi09z9dlqgprh73n03535gankqzd6pd7n1k4"; depends=[data_table ggplot2 pander]; }; hakaiApi = derive2 { name="hakaiApi"; version="1.0.0"; sha256="0wk0qmg2g1hj6bsvhr5xys02l32adn1qypv8rdma643qfvlcp46c"; depends=[httr R6 readr tibble]; }; - hal9001 = derive2 { name="hal9001"; version="0.4.1"; sha256="0hclz3rrav536dz7hqzdzck0hxx24pd59p3s2flhkx60wqxajvrq"; depends=[assertthat data_table glmnet Matrix origami Rcpp RcppEigen stringr]; }; - haldensify = derive2 { name="haldensify"; version="0.2.1"; sha256="1mckpr70q10qv2m70rbwwzb7a6mvk8hwrkvbnh7v2qksd5lcfxn8"; depends=[assertthat data_table dplyr future_apply ggplot2 hal9001 latex2exp matrixStats origami Rdpack rlang rsample scales tibble]; }; halfcircle = derive2 { name="halfcircle"; version="0.1.0"; sha256="1gbqbv3cn8w09i3f2ji3qq0snb4fy9243y12agw686fx46dfmhxs"; depends=[scales]; }; hamlet = derive2 { name="hamlet"; version="0.9.6"; sha256="076fh28grlrv38qywshi79m84jsz1ck9k4n0rg4svvr3gqkdbcn2"; depends=[]; }; handlr = derive2 { name="handlr"; version="0.3.0"; sha256="0l0jwlslz2pyg7q447k56acfhgmx5njsriqdrwd02zzbsc3g6wm5"; depends=[crul jsonlite mime urltools xml2 yaml]; }; @@ -10309,7 +10317,6 @@ in with self; { hdbm = derive2 { name="hdbm"; version="0.9.0"; sha256="0lvaica195chl6bb10wvvr7fbmh8b954fpxcm9r0gyp0d0i2a2w4"; depends=[Rcpp RcppArmadillo]; }; hdd = derive2 { name="hdd"; version="0.1.0"; sha256="0hnqjfp78s8fiabibf0dl57sj170ri1ysf7pyrk45z4qsnizbyn2"; depends=[data_table fst readr]; }; hddplot = derive2 { name="hddplot"; version="0.59"; sha256="18llkpawm12cjxlcrlra60m16virfpjqiaqkvy9mb3wq1zif61rh"; depends=[MASS multtest]; }; - hddtools = derive2 { name="hddtools"; version="0.9.4"; sha256="011yhs8c6riimz63pa2am56n5aip2yk5gryx2amvk29pzp1v6my9"; depends=[curl raster readxl rgdal sp tidyr XML zoo]; }; hdf5r = derive2 { name="hdf5r"; version="1.3.4"; sha256="0lxbdw1xf5yp82fkdj4wzp5mslay3qxd65459vh09dj131h5gl34"; depends=[bit64 R6]; }; hdfqlr = derive2 { name="hdfqlr"; version="0.6-2"; sha256="07lfr0vblahh3xhckwmzbmlja0janb73qkl4663mqgp6xk21jmi1"; depends=[]; }; hdi = derive2 { name="hdi"; version="0.1-9"; sha256="0k35zqz58lcx5p7ijhks4j7kqp553zggvrx4lh6k4s85lp601x22"; depends=[glmnet linprog MASS scalreg]; }; @@ -10387,7 +10394,7 @@ in with self; { hierarchicalDS = derive2 { name="hierarchicalDS"; version="3.0"; sha256="16d6l3y21nhynfjk4swp3pnjr6vhcxq369djgxz907zsjby35gkz"; depends=[coda ggplot2 Matrix mc2d MCMCpack mvtnorm rgeos truncnorm xtable]; }; hierarchicalSets = derive2 { name="hierarchicalSets"; version="1.0.2"; sha256="0m5mnx1zmiscj0k1gnljr7fla4y1qhysi32a8q9jlah2q7grk7x9"; depends=[ggdendro ggplot2 gtable MASS Matrix RColorBrewer Rcpp scales]; }; hierband = derive2 { name="hierband"; version="1.0"; sha256="0d95hrgkd8b5sww3wsgs6v9zg9pm71ick8x8kj8d6vyib350h6yn"; depends=[]; }; - hierbase = derive2 { name="hierbase"; version="0.1.0"; sha256="0x51ybwdd6p2l88q4izgqr4n6p41hvhlz94gfwzffkds5djy47wb"; depends=[glmnet hdi SIHR]; }; + hierbase = derive2 { name="hierbase"; version="0.1.1"; sha256="0w75b3r50w54d3h2c8kam3rnl4zpx5lwfn5rmc927bxgk0f0s3ma"; depends=[glmnet hdi SIHR]; }; hierfstat = derive2 { name="hierfstat"; version="0.5-7"; sha256="0dp8k1z5a8gqnax99y1hwfvxilzf4n2i751zr0z6ihrzirsvb3m3"; depends=[ade4 adegenet gaston gtools]; }; hiertest = derive2 { name="hiertest"; version="1.1"; sha256="17maf1w4vkqknxff3f00fzv136j3dbbigyzl4vq4sln9j27w10r3"; depends=[]; }; highD2pop = derive2 { name="highD2pop"; version="1.0"; sha256="1s4v6m2d3vzvxsgmjzczv1zj3kv3ygvv6gbkkbjwsdhkvc1rdmf0"; depends=[fastclime]; }; @@ -10396,7 +10403,7 @@ in with self; { highSCREEN = derive2 { name="highSCREEN"; version="0.4"; sha256="1nd4jayfhz89kpk4i7s3n3wlza1ik4w3gspplnjmfz951f8i3wlg"; depends=[gplots]; }; highTtest = derive2 { name="highTtest"; version="1.1"; sha256="18hgxlr0y8y1d4ldqmfcg4536lhyn5p6w88sq1vj74qr5wzydga1"; depends=[]; }; highcharter = derive2 { name="highcharter"; version="0.8.2"; sha256="1hwiifpm60kqgxlvp8zd6mhgbzc4mkcz9s9yc6byrm9i6daiqs8r"; depends=[assertthat broom dplyr htmltools htmlwidgets igraph jsonlite lubridate magrittr purrr quantmod rjson rlang rlist stringr tibble tidyr xts yaml zoo]; }; - highfrequency = derive2 { name="highfrequency"; version="0.9.0"; sha256="1p3bvhqc71vmb1zcjr5b27lwppx355bgz8578ivz404p1ays4m0w"; depends=[cubature data_table mvtnorm numDeriv quantmod Rcpp RcppArmadillo RcppRoll robustbase Rsolnp sandwich xts zoo]; }; + highfrequency = derive2 { name="highfrequency"; version="0.9.1"; sha256="1bbvcp5dw98hgwyzc8gh1rmqjgbbgd673agjs37s6ias8kf2y2nl"; depends=[cubature data_table mvtnorm numDeriv quantmod Rcpp RcppArmadillo RcppRoll robustbase Rsolnp sandwich xts zoo]; }; highlight = derive2 { name="highlight"; version="0.5.0"; sha256="1shar4y07wyixg0ichdrn2xhgwkl3mv2pxkalqzisc69w605b3hf"; depends=[]; }; highlightHTML = derive2 { name="highlightHTML"; version="0.2.5"; sha256="0j3zrvil7k5wfsbgfj2b4nbx77qsj3b4makv5angcf8s59p7q80r"; depends=[]; }; highmean = derive2 { name="highmean"; version="3.0"; sha256="1lq7z0l1737j4wvsy7951405afylyywp7vf2i7girzh459fdfzpc"; depends=[MASS mnormt mvtnorm]; }; @@ -10600,7 +10607,7 @@ in with self; { iNZightPlots = derive2 { name="iNZightPlots"; version="2.13.3"; sha256="0dj39qwcxr9pbqpkq40m4758014rwd5hi219slnjcwl6pikf6ndm"; depends=[boot chron colorspace dichromat hexbin hms iNZightMR iNZightTools lubridate magrittr quantreg rlang s20x scales survey]; }; iNZightRegression = derive2 { name="iNZightRegression"; version="1.3.1"; sha256="0vqk4574xm7xwdg1vmlc4alhfby02ifvrkc1q3vabs7zxix0xn35"; depends=[car dplyr ggplot2 ggrepel ggtext iNZightPlots multcomp patchwork]; }; iNZightTS = derive2 { name="iNZightTS"; version="1.5.8"; sha256="0nqjxjphd9lrwkj8qs05qk8sf70kyi6akvcpp9f5shb043csnbqr"; depends=[colorspace dplyr forcats ggplot2 ggtext glue gridExtra magrittr patchwork rlang tidyr]; }; - iNZightTools = derive2 { name="iNZightTools"; version="1.12.0"; sha256="17h2162pgka5y314drm2im6f5v39w9nv1k2klxjmajds9nn4cpsr"; depends=[chron dplyr forcats glue haven lubridate magrittr RcppTOML readr readxl srvyr stringr styler survey tibble tidyr validate zoo]; }; + iNZightTools = derive2 { name="iNZightTools"; version="1.12.1"; sha256="17danz18f3j3xwgy3nf88d53a3z8b5yyxf1mdq7rn61zhjiprkim"; depends=[chron dplyr forcats glue haven lubridate magrittr RcppTOML readr readxl srvyr stringr styler survey tibble tidyr validate zoo]; }; iRF = derive2 { name="iRF"; version="2.0.0"; sha256="1ll4lxg743p2zipxcq13yjsc7j7dk766dcyixwxilllbisg0dh8y"; depends=[AUC data_table doParallel dplyr foreach Matrix RColorBrewer Rcpp]; }; iRafNet = derive2 { name="iRafNet"; version="1.1-1"; sha256="0w9bry49apkrrrabglnv5w9l47jakmc30jh8q22a8gazwss293fb"; depends=[ROCR]; }; iRegression = derive2 { name="iRegression"; version="1.2.1"; sha256="1kwsrmsflmqan96aj0dczlszfww1dlg6rwycyid52f7ghg9810rn"; depends=[mgcv]; }; @@ -10793,7 +10800,7 @@ in with self; { influence_SEM = derive2 { name="influence.SEM"; version="2.2"; sha256="1cabl6486mlrmk0418s18wii3n6nl1ckv6w9281wdk4fy27y9qk2"; depends=[lavaan]; }; influenceAUC = derive2 { name="influenceAUC"; version="0.1.2"; sha256="0pscwfxs2y780lzd5sxldnnkzzs2lsjdwz71z44kn7884wqmikpm"; depends=[dplyr geigen ggplot2 ggrepel ROCR]; }; influenceR = derive2 { name="influenceR"; version="0.1.0.1"; sha256="0rj7rm236vn3v8302nwl12s0kvpv6xpdbm3q3gxk7vgwfl8nzi33"; depends=[igraph Matrix]; }; - influential = derive2 { name="influential"; version="2.2.3"; sha256="13jlib9mczpfrmisrzksxjn45i03ci0ga64qzqkf2ffwxkaw2zdc"; depends=[coop ggplot2 igraph janitor ranger]; }; + influential = derive2 { name="influential"; version="2.2.4"; sha256="0xvq661cs2wcwp42rwk8f1izwd7zfg6wjs8r88mdjksra7j0wkaf"; depends=[coop ggplot2 igraph janitor ranger]; }; influxdbclient = derive2 { name="influxdbclient"; version="0.1.0"; sha256="0fdh1c9hfzamflzq2bsrkadqlysa95bqzl2xm60kr0ka1iamn7cj"; depends=[bit64 httr jsonlite nanotime plyr R6]; }; influxdbr = derive2 { name="influxdbr"; version="0.14.2"; sha256="03dzw86mvbc8w38q9skjki1z17vc04k9q8dx7sd3xg6xbr10f9d9"; depends=[dplyr httr jsonlite magrittr purrr rlang tibble tidyr xts zoo]; }; infoDecompuTE = derive2 { name="infoDecompuTE"; version="0.6.2"; sha256="0r1capiv4zr31dsy0sqly9zb00i86zq2ihbgsmb5g4cy0f04xlqz"; depends=[MASS]; }; @@ -10929,7 +10936,7 @@ in with self; { irtGUI = derive2 { name="irtGUI"; version="0.2"; sha256="1hyabm9wvld1b1gvcn02yyd8j1wrpfmpxkcj505az64lqj4p7yj0"; depends=[irtoys magrittr mirt psych readxl shiny shinycssloaders shinydashboard WrightMap writexl]; }; irtProb = derive2 { name="irtProb"; version="1.2"; sha256="12wnvbzkh0mx9i3iyh1v2n2f2wjsjj7ad3dgv9xj949x4nbz16j0"; depends=[lattice moments]; }; irtoys = derive2 { name="irtoys"; version="0.2.1"; sha256="0h6iiaxikhbxhbyksbjnb09qdxinlkwr2v9yzs5wslbni14paq5q"; depends=[ltm sm]; }; - irtplay = derive2 { name="irtplay"; version="1.6.2"; sha256="05jqghz30lfbl4ac5p2dnqd3aphkzyy1j382qjyvcw629gahybbp"; depends=[dplyr ggplot2 gridExtra Matrix pbapply purrr reshape2 rlang statmod tidyr]; }; + irtplay = derive2 { name="irtplay"; version="1.6.3"; sha256="026h519ycyvn55c8gih2snwrljnvjwsylkdr5jpapviv8304mdj0"; depends=[dplyr ggplot2 gridExtra Matrix purrr reshape2 rlang statmod tidyr]; }; irtrees = derive2 { name="irtrees"; version="0.1.0"; sha256="03jmfyx1ia987zhi74fmmcdz70wnm8c7z5z30rwzd1cs11dijjwv"; depends=[]; }; irtreliability = derive2 { name="irtreliability"; version="0.1-1"; sha256="15qs8bvgrwajj5kfd57rd34l1p2805ilyd7w60ngrqc14d6az9d2"; depends=[fastGHQuad ltm mirt]; }; isa2 = derive2 { name="isa2"; version="0.3.5"; sha256="17vm0906szhrh2k5x694vwcfijbzmd1v3axpszfybc0lgds437cv"; depends=[lattice]; }; @@ -10951,6 +10958,7 @@ in with self; { isocat = derive2 { name="isocat"; version="0.2.6"; sha256="1d6pi2l1lfi4226890lsfa02v0df1mc8gi214icsbk4fid4jygsx"; depends=[foreach magrittr plyr raster sp]; }; isocir = derive2 { name="isocir"; version="2.0-6"; sha256="0dkxdx2g1c579q97r45shws2gylkwqlvrhmc14ddmzi45xhxlql6"; depends=[circular combinat TSP]; }; isodistrreg = derive2 { name="isodistrreg"; version="0.1.0"; sha256="0na7jipwzr16afvz2l6wxh62mv0mrq1ma1qwxnys83zhr0dca099"; depends=[Matrix osqp Rcpp]; }; + isogeochem = derive2 { name="isogeochem"; version="1.0.8.3"; sha256="14716j15138j5dqmvqk4sfpgqk3d2brdj2fjfj6ywz5579py9bqz"; depends=[]; }; isokernel = derive2 { name="isokernel"; version="0.1.0"; sha256="04mrbq2822yhcq4q82xwm61a38zsk6w55jgjkp0xnardpv8a39pb"; depends=[Matrix RANN]; }; isopam = derive2 { name="isopam"; version="0.9-13"; sha256="0y1yy0922kq5jxyc40gz8sk9vlzwfkfg5swmc6lk4007g9mgc8fm"; depends=[cluster vegan]; }; isopat = derive2 { name="isopat"; version="1.0"; sha256="0fznvgycyd35dh7pbq1xhp667gsficlmycn5pcrqcbs89069xr1s"; depends=[]; }; @@ -10968,7 +10976,6 @@ in with self; { itcSegment = derive2 { name="itcSegment"; version="0.8"; sha256="032wj34313m3wigdfalq356srdzg0cvnvxnaxwxws6bc44r78izf"; depends=[maptools raster rgeos sp]; }; itdr = derive2 { name="itdr"; version="1.0"; sha256="1113lr17m370ipg3sxghqvk4fj36bgqs5bfvnli8rss2ffyzfin0"; depends=[MASS]; }; iteRates = derive2 { name="iteRates"; version="3.1"; sha256="1dycmlm3vldc60wz2jjdfbla14383911zfahgal5mx8whxwq95c5"; depends=[ape apTreeshape geiger gtools MASS partitions VGAM]; }; - itemanalysis = derive2 { name="itemanalysis"; version="1.0"; sha256="1ksbd69mca45jlr2gpars87cf4jfm5rx6sz009sv6a83x831x5rq"; depends=[car ggplot2 polycor]; }; iterLap = derive2 { name="iterLap"; version="1.1-3"; sha256="079d4hxf1ha8pgibzb4r1yk7xqpzndd7hjbp8294qb26jvvcnd8q"; depends=[quadprog randtoolbox]; }; iterators = derive2 { name="iterators"; version="1.0.13"; sha256="190i1y2493v5c9z8978rb3idlwsjymy67k1assa9znljqbj313kp"; depends=[]; }; iterpc = derive2 { name="iterpc"; version="0.4.2"; sha256="06q7l8mz8ws4nn6gb0whnlqs8my2n8z2d2g8fvv3cxd28904dg9q"; depends=[arrangements gmp iterators]; }; @@ -11064,7 +11071,7 @@ in with self; { jrc = derive2 { name="jrc"; version="0.5.0"; sha256="0ab8kks0i5cqj2p15hf9zinj3hdji2nj63j134q26bdf4hdvvza3"; depends=[httpuv jsonlite mime R_utils R6 stringi stringr]; }; jrich = derive2 { name="jrich"; version="0.60-35"; sha256="1y486bfqmfg3f22wm0lfk3lh20ljgi8qrgn5jji0f417wh48nf0x"; depends=[ape]; }; jrt = derive2 { name="jrt"; version="1.0.1"; sha256="023i0xqz8mhnjnii92vjw64mjnnlf8jaji99i4c2vxcr7m83jm0r"; depends=[directlabels dplyr ggplot2 ggsci irr mirt psych tidyr]; }; - jrvFinance = derive2 { name="jrvFinance"; version="1.4.2"; sha256="12x5k3xk4f33jn1czqvh651gf1n255128dihdiqqpj0229gcb138"; depends=[]; }; + jrvFinance = derive2 { name="jrvFinance"; version="1.4.3"; sha256="0g3w65avys5chni0zlahzwqgv09z9na08yhay385ax33ddwrcrjv"; depends=[]; }; js = derive2 { name="js"; version="1.2"; sha256="0s5rj845255a4fzv4h76gcnnqyl5cg3c03r2ay3f00jxnxvvigcg"; depends=[V8]; }; jsTree = derive2 { name="jsTree"; version="1.2"; sha256="06mmz55brm6w19vnlk1w8qaz0n3czlyl4fs62nzgdlsdjn8pad1h"; depends=[data_table htmltools htmlwidgets jsonlite]; }; jsTreeR = derive2 { name="jsTreeR"; version="1.4.0"; sha256="0gvrp7qmjd8qikb0vd72fb43csd7505szjkxghbzbpp65n14z55r"; depends=[base64enc fontawesome htmltools htmlwidgets jquerylib miniUI R_utils rstudioapi shiny shinyAce]; }; @@ -11077,7 +11084,7 @@ in with self; { jsonlite = derive2 { name="jsonlite"; version="1.7.2"; sha256="1lhzcpz9clwq04i5m6jzkvw9x03pwlqrixv4l9xzchjr8d84nd86"; depends=[]; }; jsonstat = derive2 { name="jsonstat"; version="0.0.2"; sha256="0p0d3snl1971p5ikrkmwqrjjh4fy0b89qk3rnd1dayfb0r80xnnj"; depends=[cli dplyr jsonlite rlang]; }; jsontools = derive2 { name="jsontools"; version="0.1.0"; sha256="13i1g8lmzgs7hd0xay4gm8z2myzbjzi73fwp9x4f4f9mywj7zl5s"; depends=[bit64 DBI glue jsonlite magrittr pillar purrr rlang RSQLite tibble tidyselect vctrs withr]; }; - jsonvalidate = derive2 { name="jsonvalidate"; version="1.3.1"; sha256="1qp1wb4js0hpdlcp2z6amslm9hvbgbfr7b6jkp67bgcignqz3pf4"; depends=[V8]; }; + jsonvalidate = derive2 { name="jsonvalidate"; version="1.3.2"; sha256="0myvm93azl6mj60l8fp91qa3ln3nnwj4p48xli8k215sm6zhhv1b"; depends=[V8]; }; jstable = derive2 { name="jstable"; version="1.0.7"; sha256="1hs202z49aazsadr0jb67wk43i18y3h1aw0xflfmvirxjxr63xm8"; depends=[coxme data_table dplyr geepack labelled lme4 magrittr purrr survey survival tableone tibble]; }; jti = derive2 { name="jti"; version="0.8.0"; sha256="15rx44psz5hbpqzlmwnmqzzdf6488n17mbhyh52wyaaa70gk9ndh"; depends=[igraph Rcpp RcppArmadillo sparta]; }; jtools = derive2 { name="jtools"; version="2.1.4"; sha256="1zbzhr7bz735b8pvqjxhqnmh3sl12xvpz5fpkmjngvwi4yz5873r"; depends=[crayon generics ggplot2 magrittr pander pkgconfig rlang tibble]; }; @@ -11179,7 +11186,6 @@ in with self; { klustR = derive2 { name="klustR"; version="0.1.0"; sha256="1g2q6h3cbm8v3gqz0f6v8bl5na9972k38d94czjfxmx4cv7wfgx8"; depends=[htmlwidgets jsonlite]; }; km_ci = derive2 { name="km.ci"; version="0.5-2"; sha256="1l6kw8jppaa1802yc5pbfwwgac56nhwc9p076ivylhms4w7cdf8v"; depends=[survival]; }; kmc = derive2 { name="kmc"; version="0.2-4"; sha256="0y8bdgdxsz53fiqc2yr39agndxs4zxj7mmplj273map9k0slnnqk"; depends=[emplik Rcpp rootSolve]; }; - kmcudaR = derive2 { name="kmcudaR"; version="1.1.0"; sha256="16dkv9ag5375zc23nqakbg7v6knxvh1pips9rjsls0d7rw2bg1bs"; depends=[Rcpp RcppEigen]; }; kmed = derive2 { name="kmed"; version="0.4.0"; sha256="0lm22wrvv8pfndy1ii1wp54makfp37hism3z9hp700zhpml4nnch"; depends=[ggplot2]; }; kmer = derive2 { name="kmer"; version="1.1.2"; sha256="0jimn9r0abglwxdl1zqz0lxa99cmj6haydkxjzqfbpx9by80wnww"; depends=[openssl phylogram Rcpp]; }; kmi = derive2 { name="kmi"; version="0.5.5"; sha256="1j6fyi004fl97l569sn05pb7bmc2jx5hi0blfd896qi309s9qkd8"; depends=[mitools survival]; }; @@ -11216,7 +11222,7 @@ in with self; { kriens = derive2 { name="kriens"; version="0.1"; sha256="1qi65k9fsbbkbw0w40rv60p5ygrvr10rmlyxdaqa5bdpcmrbly5z"; depends=[]; }; krige = derive2 { name="krige"; version="0.6.1"; sha256="0xcx7glarqjb25bchs3wflw5lyy9xrbksirrdm35vdsxgif62ydz"; depends=[coda Rcpp]; }; kriging = derive2 { name="kriging"; version="1.1"; sha256="04bxr34grf2nlrwvgrlh84pz7yi0r8y7dc2wk0v5h5z6yf5a085w"; depends=[]; }; - krippendorffsalpha = derive2 { name="krippendorffsalpha"; version="1.1"; sha256="0d06rwg3ab383x4194n5s50n5nc6ns16jhcfn8kzzcj7j9swz5kl"; depends=[]; }; + krippendorffsalpha = derive2 { name="krippendorffsalpha"; version="1.1-1"; sha256="1vaqwimlmbxh2jy08f3bkpb9r4fz6gkx6cpzjkgiyspjaqhc8a1a"; depends=[]; }; krm = derive2 { name="krm"; version="2020.5-20"; sha256="1b6477cjv5k30djvrlbmwn91ghgwk24cfd58cb0q80xqhgiqvrzb"; depends=[kyotil]; }; ks = derive2 { name="ks"; version="1.13.2"; sha256="02gnpyjqdlj6dl2x9i7mmks4f5nrh85j3h0kfa0v1v6wi8blx7kw"; depends=[FNN kernlab KernSmooth Matrix mclust mgcv multicool mvtnorm plot3D pracma]; }; ksNN = derive2 { name="ksNN"; version="0.1.2"; sha256="06x471hck95xqy7rbh53ibhzh6kfjra7y9ipqdj2rqdkmfdj72q8"; depends=[Rcpp]; }; @@ -11328,6 +11334,7 @@ in with self; { lbfgs = derive2 { name="lbfgs"; version="1.2.1"; sha256="0p99g4f3f63vhsw0s1m0y241is9lfqma86p26pvja1szlapz3jf5"; depends=[Rcpp]; }; lbfgsb3c = derive2 { name="lbfgsb3c"; version="2020-3.2"; sha256="07mhiaxhjjma5c65z3pz7wchgsqn4b19labzyq25ncnmj319fxrg"; depends=[numDeriv Rcpp RcppArmadillo]; }; lbiassurv = derive2 { name="lbiassurv"; version="1.1"; sha256="1i6l3y4rasqpqka7j39qjx22wjbilgc9pkp05an52aysfvfxy193"; depends=[actuar]; }; + lbm = derive2 { name="lbm"; version="0.9.0.2"; sha256="0mn0k5liwrnbsl5lf4k5b8j2y79bkk689v8wrvcmj3l7q2abaxhf"; depends=[]; }; lbreg = derive2 { name="lbreg"; version="1.3"; sha256="1z9vixf6sl0k9lizngc3859lk32srkk1d8y133sl6s37ppmqb4s2"; depends=[MASS]; }; lcars = derive2 { name="lcars"; version="0.3.7"; sha256="1hjlcl57aazcm5hgjiwmi116rk13z2gr65mpgcvyc0p9xih8bvdf"; depends=[ggplot2 shiny trekcolors]; }; lcc = derive2 { name="lcc"; version="1.1.3"; sha256="0hbv0nv421ldk10b4qr8dq7ww4w1342sl3s8gw0slfigxbbxv4bh"; depends=[doRNG doSNOW foreach ggplot2 hnp nlme]; }; @@ -11469,7 +11476,7 @@ in with self; { linearQ = derive2 { name="linearQ"; version="2.0"; sha256="0sx7bx0x1k193day5w1dbmc09kn5741pcilxijjn2y5aijhd5wk9"; depends=[Rcpp stepR]; }; lineartestr = derive2 { name="lineartestr"; version="1.0.0"; sha256="0bzsywk97j2mmsi7pj9267za1q2601crynh9kszwj6xjbg08nvsm"; depends=[dplyr forecast ggplot2 Matrix readr sandwich tidyr viridis]; }; linemap = derive2 { name="linemap"; version="0.2.0"; sha256="04nb0hmmikksp7ak4vdam9r2dpv7w3r5wkxxbjr7yk9pfq5gjncp"; depends=[sf]; }; - lineup = derive2 { name="lineup"; version="0.38-3"; sha256="15m90cg700lq1w54adkmld876fpr41nhv1y0vqwbhwwfjgfxj700"; depends=[class qtl]; }; + lineup = derive2 { name="lineup"; version="0.40"; sha256="01m50q9qdryav94rmspm4dk17m7kfcxb0p502cbxmnajklz3ajgg"; depends=[class qtl]; }; lineup2 = derive2 { name="lineup2"; version="0.6"; sha256="0qkxwn30g0bjm9aq9a59pb3xq844qr43ribnk607zlf8lwbibsk2"; depends=[Rcpp]; }; lingmatch = derive2 { name="lingmatch"; version="1.0.2"; sha256="1986vi8r105wsd27vzy7wq9w0flgmgigssa3p0j7xmgr4kmjkks4"; depends=[Matrix Rcpp RcppParallel]; }; lingtypology = derive2 { name="lingtypology"; version="1.1.7"; sha256="1ykbjzv139vdlpyf2ka59whz1x98ingsj2z09lz4f5f8dasp7fn7"; depends=[jsonlite leaflet leaflet_minicharts stringdist]; }; @@ -11521,7 +11528,6 @@ in with self; { lmPerm = derive2 { name="lmPerm"; version="2.1.0"; sha256="1ss2hcfxqvfq4n6hypv7jp0n0apby9payxzaswaysr5368lkidn3"; depends=[]; }; lmQCM = derive2 { name="lmQCM"; version="0.2.3"; sha256="0zld7gyng9kk3np62j8xfg951gvgsq2r8x3zmjfr2ykalw36kx5d"; depends=[Biobase genefilter progress]; }; lmSubsets = derive2 { name="lmSubsets"; version="0.5-2"; sha256="1afdpcp3qiiprzc47cbckf49jd3f8ip81441ghgx0kfx54d1m305"; depends=[]; }; - lmSupport = derive2 { name="lmSupport"; version="2.9.13"; sha256="0ln5c91mbxkymgnv2nw5m3nrm5bwckpikgb9x1qhmjc55m98wkb8"; depends=[AICcmodavg car gplots gvlma lme4 pbkrtest psych pwr]; }; lmboot = derive2 { name="lmboot"; version="0.0.1"; sha256="1v7a3vlv0187mpg3y3pj7f3pbk1v5n6amw732chy10vdw5nmfkwd"; depends=[evd]; }; lmds = derive2 { name="lmds"; version="0.1.0"; sha256="130azb0nc2wwxv0qi8v5s4rd02p9lc92zwn634pv7b8awbw81i65"; depends=[assertthat dynutils irlba Matrix]; }; lme4 = derive2 { name="lme4"; version="1.1-27.1"; sha256="1i9f8kl2qj48j75dbn1vmwxz1xlbikdr7v2yq542w6dq74z8gyi5"; depends=[boot lattice MASS Matrix minqa nlme nloptr Rcpp RcppEigen]; }; @@ -11551,6 +11557,7 @@ in with self; { lmviz = derive2 { name="lmviz"; version="0.2.0"; sha256="0sl2k02m5bxkb4jg8y666ln0xxhr4dhsfz9hlp55p9smlhycl5s2"; depends=[car lmtest MASS mgcv rgl scatterplot3d shiny shinyjs]; }; lncDIFF = derive2 { name="lncDIFF"; version="1.0.0"; sha256="012dwrcp0pny59hvzj7mnyyc3nijcjgxc0dyx7ab2fknp9bhs5w8"; depends=[]; }; loa = derive2 { name="loa"; version="0.2.47.1"; sha256="1xzcf3cvk3zrlqknrw5j19g7z4lw74ahw7cwavx7c9b007kk7f5c"; depends=[lattice MASS mgcv OpenStreetMap plyr png RColorBrewer rgdal RgoogleMaps sp]; }; + loadflux = derive2 { name="loadflux"; version="0.0.2"; sha256="08lbpd0nwwck36bkklmqx62lyj9p1ywwk80v1qx7f6zhgfjx8pj4"; depends=[dplyr dygraphs ggplot2 lubridate rlang tidyr tsibble xts zoo]; }; loadings = derive2 { name="loadings"; version="0.1.1"; sha256="0nickkdjkfsjy8k52243181fdd1jvj3rgpzkcfjsmacbjcdl169g"; depends=[]; }; loadr = derive2 { name="loadr"; version="0.1.3"; sha256="01nsjsv7c8grsizfisczqwjrz5saff0pgn7716ig4i8nzargvz7a"; depends=[]; }; lobstr = derive2 { name="lobstr"; version="1.1.1"; sha256="0vkif17825x33cz8r89j0qph4wj5l8fzfgl8nh2g7m2v140cxjdq"; depends=[crayon Rcpp rlang]; }; @@ -11576,7 +11583,7 @@ in with self; { loe = derive2 { name="loe"; version="1.1"; sha256="1n16pgfxg9vcn729xxjbbvavg2ywbdcch9v2ph8nv3z7psc0q46c"; depends=[MASS]; }; loewesadditivity = derive2 { name="loewesadditivity"; version="0.1.0"; sha256="0j9vvh2ys09hy2k3mbrlf0p493ymrxvfsdcjw0p6rlls54z9lqqc"; depends=[dplyr ggplot2 gridExtra magrittr metR rlang rootSolve tidyr viridis]; }; log = derive2 { name="log"; version="1.1.0"; sha256="04cl8qb2ivdili89h4cghcjqywpkz85v48g2vkg6hdlimcd63wff"; depends=[cli crayon R6]; }; - log4r = derive2 { name="log4r"; version="0.4.1"; sha256="0qxzmbrjasa766vgqxn7a2ifnpny7zchvb2b3mi8gkbznxlixyif"; depends=[]; }; + log4r = derive2 { name="log4r"; version="0.4.2"; sha256="0d7yxp3h7iy0miaprgp16n5vbxk0mvy8aci8r0mmml6wcl2h4jlj"; depends=[]; }; logKDE = derive2 { name="logKDE"; version="0.3.2"; sha256="09gachibj0klqa9ijw572lwphbh9qj6zqray5byq1dh7zsiq516q"; depends=[pracma Rcpp]; }; logNormReg = derive2 { name="logNormReg"; version="0.4-0"; sha256="10b6a7z2mq0vrpg3sy4m5g8xaw3zs5k0zsbngxqmjmln99big9ad"; depends=[]; }; logOfGamma = derive2 { name="logOfGamma"; version="0.0.1"; sha256="0r7di0l646ycfmdjk8hli6b0v7qj0i8z3i8i7rwd3fsblb2q22vd"; depends=[]; }; @@ -11682,6 +11689,7 @@ in with self; { ltsspca = derive2 { name="ltsspca"; version="0.1.0"; sha256="0hgl2zd8y01z8mhnqg1hlv1l7klpwhwk7q8b99pw9vgnh1f2gnfs"; depends=[pracma Rcpp RcppArmadillo]; }; ltxsparklines = derive2 { name="ltxsparklines"; version="1.1.2"; sha256="1jnygg7wm2768lrrzball8rn8f60xy4nc3a18h4d32jpnbhifj13"; depends=[]; }; lubridate = derive2 { name="lubridate"; version="1.8.0"; sha256="199b00cql07gf3rf4hh5ba34amnk0ai40zhx73dq1mpkn7ynxml7"; depends=[cpp11 generics]; }; + luca = derive2 { name="luca"; version="1.0-6"; sha256="0zrxrwpk7iblpysd4fbh50s5bmvd5l1bzbd8rdyk06wby6bcs1rk"; depends=[genetics survival]; }; lucas = derive2 { name="lucas"; version="1.0"; sha256="1ws35f2pq2y7nnik40nj4qpz1d499gfc5isr1409pwy6r5knb78q"; depends=[DBI plyr rpostgis RPostgreSQL]; }; lucid = derive2 { name="lucid"; version="1.8"; sha256="1dhbyr0l7cp5r0r7xdgqqxlix5hhk0v4v0zghd904dvfyaz2zdwi"; depends=[nlme]; }; ludic = derive2 { name="ludic"; version="0.2.0"; sha256="08j6y65dxalyrcp14mry7a393if42lfh8smkq1q70dsdk6645j7d"; depends=[fGarch landpred Matrix Rcpp RcppArmadillo rootSolve]; }; @@ -11709,6 +11717,7 @@ in with self; { mBvs = derive2 { name="mBvs"; version="1.5"; sha256="1fmi4ap55jl06swivspk24acwf5n4wd9agiw330z15x427j579s3"; depends=[]; }; mDAG = derive2 { name="mDAG"; version="1.2.2"; sha256="0k85sl0jmpcpiz92cz6x3kd8jc6yyfv9z4wm1kyaikcf5q4qlad4"; depends=[bnlearn logistf mgm nnet pcalg Rcpp RcppArmadillo]; }; mExplorer = derive2 { name="mExplorer"; version="1.0.0"; sha256="1563d9r7f25vw5vsph21z3dwz9n40dpaiyx28ay1bbp5i1x2l3rb"; depends=[nnet qusage]; }; + mFD = derive2 { name="mFD"; version="1.0.0"; sha256="0p93ca3gkgqi3w3f4q7xh33kslhy2dg7sx31h6f4mj4kkk95wr1r"; depends=[ade4 ape betapart cluster dendextend FactoMineR gawdis geometry ggplot2 ggrepel Hmisc patchwork reshape2 rstatix vegan]; }; mFLICA = derive2 { name="mFLICA"; version="0.1.3"; sha256="0q9d4x6imrcayk0qcdwp6rigk9b741xc64vbiggmynzyc1kjwr4w"; depends=[dtw ggplot2]; }; mFilter = derive2 { name="mFilter"; version="0.1-5"; sha256="0anc93mciq8j64knd0i38sfgv10w1gd375wnfzn1fq8sj3lby7kb"; depends=[]; }; mGSZ = derive2 { name="mGSZ"; version="1.0"; sha256="08l98i75h2h8kx9ksvzp5qr8jhf0l6n4j7rg8fcn7hk8chn8v5zh"; depends=[Biobase GSA ismev limma MASS]; }; @@ -11760,7 +11769,7 @@ in with self; { makeProject = derive2 { name="makeProject"; version="1.0"; sha256="09q8xa5j4s5spgzzr3y06l3xis93lqxlx0q66s2nczrhd8nrz3ca"; depends=[]; }; makedummies = derive2 { name="makedummies"; version="1.2.1"; sha256="062rvijhy2dybpgxzp44cg46bfyb8lp9yasv3mhskhf3yg717sqp"; depends=[tibble]; }; makemyprior = derive2 { name="makemyprior"; version="1.0.0"; sha256="0l4xpalw13x07fr1g9h6dfcmb16dk712pp70mnshqjhy1vlq2ajp"; depends=[ggplot2 knitr MASS Matrix rlang rmarkdown shiny shinyBS shinyjs testthat visNetwork]; }; - makepipe = derive2 { name="makepipe"; version="0.0.4"; sha256="0j4iqwl2qqd4652c985yph9rv8847p6fipj1nrj2iwz77cnhg358"; depends=[cli R6 visNetwork]; }; + makepipe = derive2 { name="makepipe"; version="0.0.5"; sha256="1s8cp8sv3ckhp4j4f4nypmk04p73zbjwf51cwbnc40kq7wqkjnw2"; depends=[cli R6 visNetwork]; }; maketools = derive2 { name="maketools"; version="1.2.0"; sha256="1i2s48s0qfk9nwkkbx5hr0q7b0c8xziyrsg1klianmk9jqfngg36"; depends=[sys]; }; malan = derive2 { name="malan"; version="1.0.2"; sha256="0qwf0r2gwpb93gzvyp8vaw7j6rhghr6nbrfp8xw876n5j5b9jhj3"; depends=[dplyr igraph magrittr Rcpp RcppArmadillo RcppProgress tibble tidygraph]; }; malani = derive2 { name="malani"; version="1.0"; sha256="1jps28gfkiysr356ackxf1my5xz6rpx3a2bv68pziy2614hrqbs9"; depends=[e1071]; }; @@ -11820,7 +11829,7 @@ in with self; { marginalizedRisk = derive2 { name="marginalizedRisk"; version="2021.2-4"; sha256="0kagl9xghq9nsh9qvx165j1a5plh08zxhb6nm8j402mnl8pq7a4z"; depends=[]; }; margins = derive2 { name="margins"; version="0.3.26"; sha256="0sx5xjbzz1rjz8bklfna3171s53xsh123x4bh0kmwp006v8rv309"; depends=[data_table MASS prediction]; }; marima = derive2 { name="marima"; version="2.2"; sha256="03nvh93r4052li84yjqzc106gwh1542q9s192s980gs6sgy8scm6"; depends=[]; }; - mark = derive2 { name="mark"; version="0.4.0"; sha256="1jv16pbfbnayah7lrrpdq602wicy0b9iclpnsvb9ixriq2cfhi4b"; depends=[magrittr]; }; + mark = derive2 { name="mark"; version="0.4.1"; sha256="1lcax5bi00n7as4pm2149rjvymrlasf0837k0iyvb58k7nyhwv9x"; depends=[magrittr]; }; markdown = derive2 { name="markdown"; version="1.1"; sha256="06zwbrp14bri3470anadd7dvgmw06xf8df6v2pk64wx3f9sd934d"; depends=[mime xfun]; }; markdownInput = derive2 { name="markdownInput"; version="0.1.2"; sha256="1qxil2liikbbn6w8niyc03fwqvwvdv6wiy98ip8j77729i7g2hln"; depends=[markdown shiny shinyAce]; }; marked = derive2 { name="marked"; version="1.2.6"; sha256="0k367sjyac1w894rndz5m0drmbd56nzyx5mr7mvhsqzq3gnv4dw5"; depends=[bookdown coda data_table expm kableExtra knitr lme4 Matrix numDeriv optimx R2admb Rcpp TMB truncnorm]; }; @@ -11925,12 +11934,11 @@ in with self; { mclcar = derive2 { name="mclcar"; version="0.1-9"; sha256="0bwnivmajsrvmwskhk44qhz4nnc0irxq83g0kzbj4wshhivnwryp"; depends=[fields maxLik nleqslv rsm spam spdep]; }; mcll = derive2 { name="mcll"; version="1.2"; sha256="0i9zqbh0l9a9mv4558gbdq9mh52chanykyfwmiymmxygxhp809sz"; depends=[locfit statmod]; }; mclogit = derive2 { name="mclogit"; version="0.8.7.3"; sha256="1as3mqqzxjdr7saw4vpgg88yqbax86z1qhl9s1jm49cw7nyqigxz"; depends=[Matrix memisc]; }; - mclust = derive2 { name="mclust"; version="5.4.7"; sha256="08scl72llpinfijiyx14yqvmx8lma9jvh8h92v9ynnzfr9kadxa5"; depends=[]; }; + mclust = derive2 { name="mclust"; version="5.4.8"; sha256="0j79a1nidwxl62x8j97k09qjxladp9irw5z1x1q5gyy6zxskvh8i"; depends=[]; }; mclustAddons = derive2 { name="mclustAddons"; version="0.5"; sha256="11rrilf05hdhmvrxkngqv4rcdzn7q1bhdn877ajc38257rhjnmjm"; depends=[foreach iterators mclust Rcpp RcppArmadillo]; }; mclustcomp = derive2 { name="mclustcomp"; version="0.3.3"; sha256="1kxrms77m7n9lv32771zvwg82xqh5kx8al6f0bknsj8idq8aqbh3"; depends=[Rcpp RcppArmadillo Rdpack]; }; mcmc = derive2 { name="mcmc"; version="0.9-7"; sha256="0q42m8ab7b6bxhns494ksjdss5f3c5m2jjfdlfj6fk1nz7ax7i5p"; depends=[]; }; mcmcOutput = derive2 { name="mcmcOutput"; version="0.1.1"; sha256="0nw33xb7x695g8i91hfj2apgywbyzf2k587drzridqnfmbm26pni"; depends=[coda HDInterval MASS]; }; - mcmcabn = derive2 { name="mcmcabn"; version="0.4"; sha256="0ym7ngai8pv9xalh1s53p8f96s8xpc05zi6ryih2rjv449ib06kq"; depends=[abn coda cowplot ggplot2 ggpubr gRbase]; }; mcmcderive = derive2 { name="mcmcderive"; version="0.1.2"; sha256="0v89nyvr2d57zvjy9qq6drqb48s4n88hb65pima1gx4aqb479yfh"; depends=[abind chk extras mcmcr nlist purrr universals]; }; mcmcensemble = derive2 { name="mcmcensemble"; version="3.0.0"; sha256="1yf8mm0nmw0x89pj3is5rv3arcfbxvkfh8bip1sprcqzsrixa0s8"; depends=[future_apply progressr]; }; mcmcplots = derive2 { name="mcmcplots"; version="0.4.3"; sha256="0187z79gmvcrwqybxh3ckhcrqi0nqhvcvlczgxfkpq95y5czprdq"; depends=[coda colorspace denstrip sfsmisc]; }; @@ -11945,6 +11953,7 @@ in with self; { mcreplicate = derive2 { name="mcreplicate"; version="0.1.2"; sha256="12pmfp75sc00cdrkx4xniq74qqx3y67qxwdrrbp2mf562pdn2gmn"; depends=[]; }; mcsm = derive2 { name="mcsm"; version="1.0"; sha256="13sx7s3ywis5n4a70ld2szld9fb8jkfsc82dy6iskhy17vy8pml0"; depends=[coda MASS]; }; mctest = derive2 { name="mctest"; version="1.3.1"; sha256="1d248r9ifwl1xhvka6z69l943rvbq7s7ag6vqp9lljkcybvg75f2"; depends=[]; }; + mctq = derive2 { name="mctq"; version="0.1.0"; sha256="1j4f5jfwq827x0dd19xfwjrxf1rclr5813l2rcirxifsncs5hbnc"; depends=[checkmate cli dplyr hms lifecycle lubridate]; }; mcunit = derive2 { name="mcunit"; version="0.3.2"; sha256="16nnm50g87iaf058b1w5w5hphx99xplczndcbv1356f2gs2gfy6l"; depends=[Rdpack rlang simctest testthat]; }; mcvis = derive2 { name="mcvis"; version="1.0.8"; sha256="0dc7jwdfzyn6x785lbwikpql96b3gh9fhb65fv4sk9ib28b2kpmy"; depends=[assertthat dplyr ggplot2 igraph magrittr psych purrr reshape2 rlang shiny]; }; mcwr = derive2 { name="mcwr"; version="1.0.0"; sha256="1aqmrxjmllq1waw3pzmwhqd07q02n1h1g6c0qi1fvay4xz0rwgik"; depends=[]; }; @@ -12073,7 +12082,7 @@ in with self; { metamisc = derive2 { name="metamisc"; version="0.2.5"; sha256="1fg6k2sr74iprjx2bwqqfnp67c493fkilncy2nbynv4sqmbl8s0i"; depends=[dplyr ggplot2 lme4 metafor mvtnorm plyr pROC]; }; metan = derive2 { name="metan"; version="1.15.0"; sha256="140ldg9w2z3nc04dwzw6lpnn1an28mb7013bfr72rxhkbh8wravl"; depends=[dplyr GGally ggforce ggplot2 ggrepel lme4 lmerTest magrittr mathjaxr patchwork purrr rlang tibble tidyr tidyselect]; }; metansue = derive2 { name="metansue"; version="2.4"; sha256="1ja7a3z4d764a1rcf256kmzf8xc6d8x7mqq12vzznw5ks8r2p9hk"; depends=[]; }; - metap = derive2 { name="metap"; version="1.5"; sha256="0cwjhnzzafaq00nvjk76xnb9m83sv0ga1binm2142j9pkfj762v4"; depends=[lattice mathjaxr mutoss Rdpack TFisher]; }; + metap = derive2 { name="metap"; version="1.6"; sha256="0z9fr4s8h6s6r50d1v29kyliflp2cws4n9zafhhpvfkl84k0488n"; depends=[lattice mathjaxr mutoss Rdpack TFisher]; }; metapack = derive2 { name="metapack"; version="0.1.4"; sha256="0n7y3jvjrbvq1d58cbw5b5pb10v02w1314yq0n88snc70j9s2mq3"; depends=[BH Formula ggplot2 gridExtra Rcpp RcppArmadillo RcppProgress]; }; metaplot = derive2 { name="metaplot"; version="0.8.3"; sha256="1zw8bq2fy9m15dfc92ag0dz2k9dqrf5jbvfaycizcgsgaqd79s1c"; depends=[dplyr encode ggplot2 gridExtra gtable lattice magrittr rlang scales tidyr]; }; metaplotr = derive2 { name="metaplotr"; version="0.0.3"; sha256="01iala6cxsxv30fnlh80md5mpy3ksd2piw90zcls8f68g1c6v1jy"; depends=[ggplot2 gridExtra]; }; @@ -12095,7 +12104,7 @@ in with self; { meteoland = derive2 { name="meteoland"; version="0.9.7"; sha256="0m2q451zgvimd3xx3h66c3blzp7r5waj8ddb9p8hg5aj3drq2l8p"; depends=[httr jsonlite ncdf4 Rcpp rgdal sp spdep]; }; meteor = derive2 { name="meteor"; version="0.3-4"; sha256="01009d9wpxybig4n82m48hqqg1k4x4shcjxfy8y0kk7cgfdb4naw"; depends=[Rcpp]; }; meteorits = derive2 { name="meteorits"; version="0.1.1"; sha256="1vk8pbhfc5mbkbpw7ml81gx9i8187xp3vx36pbyyhjbrpy6gqabx"; depends=[MASS pracma Rcpp RcppArmadillo]; }; - meteospain = derive2 { name="meteospain"; version="0.0.2"; sha256="15wmf5w8p7j0bmgmkjsyr6jb9ss941vhvgg2zl5bc3975z4czjyg"; depends=[assertthat crayon dplyr glue httr jsonlite lubridate magrittr purrr rlang sf stringr tidyr units vctrs xml2]; }; + meteospain = derive2 { name="meteospain"; version="0.0.3"; sha256="0qqlfli9k4472ajx57xkf9laym0znl43qy8xzdq8xnq5alv0yrsw"; depends=[assertthat cachem crayon dplyr glue httr jsonlite lubridate magrittr memoise purrr rlang sf stringr tidyr units vctrs xml2]; }; methcon5 = derive2 { name="methcon5"; version="0.1.0"; sha256="08xsi6j65izxqcrlh37f2d7m3pwna1v6zvdv96mqylsjqgqmbk5x"; depends=[dplyr magrittr purrr rlang]; }; metools = derive2 { name="metools"; version="1.0.0"; sha256="05l49ifx2nnlbdxh2qhdb0islf95fc67720rm5in7mrlida4khnq"; depends=[ggplot2 lubridate scales stringr tibble tidyr]; }; metricsgraphics = derive2 { name="metricsgraphics"; version="0.9.0"; sha256="1zbx82b34y0rr4w7rzvyc1nzk95w6cdkg0j1kkshbmkvplq6v9i4"; depends=[htmltools htmlwidgets magrittr]; }; @@ -12159,7 +12168,7 @@ in with self; { microSTASIS = derive2 { name="microSTASIS"; version="0.1.0"; sha256="09zyf80l964lfil56vln70i0r2d8ry2ffx4zz3f3xcka22m94r78"; depends=[crayon fmsb future future_apply ggplot2 ggside progressr reshape2 stringr]; }; microbats = derive2 { name="microbats"; version="0.1-1"; sha256="1mahvblaiwg1xk2s34wd1ic8ddc9lh6g0azik2pd97bsf0krkyw8"; depends=[]; }; microbenchmark = derive2 { name="microbenchmark"; version="1.4.8"; sha256="0gqkxf31my5dchv81yjnvk9gpziihc4p6dbvw01586xbi16vdbp1"; depends=[]; }; - microbial = derive2 { name="microbial"; version="0.0.19"; sha256="0pf8rdr7fdfalx28hqkfzrgwdia956d3cksz58bbf75hsiay8vak"; depends=[Biostrings broom dada2 DECIPHER DESeq2 dplyr edgeR ggplot2 ggpubr magrittr MASS phangorn phyloseq plyr randomForest rlang rstatix S4Vectors SummarizedExperiment testthat tidyr vegan]; }; + microbial = derive2 { name="microbial"; version="0.0.20"; sha256="1y5vhh4sq22c4wxb3c9rzj53niacn97vfg0484d9wkcjb179lc79"; depends=[broom DESeq2 dplyr edgeR ggplot2 ggpubr magrittr phangorn phyloseq plyr randomForest rlang rstatix S4Vectors SummarizedExperiment testthat tidyr vegan]; }; microclass = derive2 { name="microclass"; version="1.2"; sha256="0q6mn1hbi6nk29x2x5a1wcdqp06mjggbrpglk5i8pp4gkqlzhl8q"; depends=[dplyr microcontax microseq Rcpp RcppEigen RcppParallel rlang stringr tibble]; }; microclustr = derive2 { name="microclustr"; version="0.1.0"; sha256="04xn8p4wgmxq1jbxawq0rhx6l7y1kddlbdfid8zsi4x4arkz7hvp"; depends=[Rcpp]; }; microcontax = derive2 { name="microcontax"; version="1.2"; sha256="004g979hyg0asbah7hxr445fidil4ibw1b8pqpjdbgmpm1qgvw7y"; depends=[microseq]; }; @@ -12273,7 +12282,6 @@ in with self; { mixedsde = derive2 { name="mixedsde"; version="5.0"; sha256="0ss1ng4nx91gxj85wxxfyh9ljxsj3ag6lsj1a5d2815p9jzl7dsv"; depends=[MASS moments plot3D sde]; }; mixexp = derive2 { name="mixexp"; version="1.2.5"; sha256="0nbf10xhrr51rb1b2apcj4p3ci8xbi7flgz500ar3mxh8h8l74sq"; depends=[daewr gdata lattice]; }; mixl = derive2 { name="mixl"; version="1.3.2"; sha256="0adxbwh8zlcg076baj5b5dglfsphliz5gz9xk82xkbnlqawmj33k"; depends=[maxLik numDeriv randtoolbox Rcpp readr sandwich stringr]; }; - mixlink = derive2 { name="mixlink"; version="0.1.5"; sha256="0ywgrcplhspc0x5fniw52xqz20y7j9mwgy4ky8lv3vii659mr52m"; depends=[mvtnorm numDeriv Rcpp RcppGSL]; }; mixlm = derive2 { name="mixlm"; version="1.2.5"; sha256="0k7sy2bkf6vsp5qkz33327p1kjyzn3cxmxzc6dmw6g29c4dyxkac"; depends=[car leaps multcomp pls pracma]; }; mixmeta = derive2 { name="mixmeta"; version="1.2.0"; sha256="093f6jjq0hc49k5kmjp17s2lv3swpssfxnra80bwv59ggav8w8d8"; depends=[]; }; mixpoissonreg = derive2 { name="mixpoissonreg"; version="1.0.0"; sha256="1pk45p96kwl3gvi5523vm824s1bb5aqpn9qqpqy8kjy2pd2a4k32"; depends=[dplyr Formula gamlss gamlss_dist generics ggplot2 ggrepel gridExtra lmtest magrittr pbapply Rfast rlang statmod tibble]; }; @@ -12366,7 +12374,6 @@ in with self; { mmm2 = derive2 { name="mmm2"; version="1.2"; sha256="1h9pn5s3jjs4bydrr1qysjb4hv7vs4h3m7mvi22ggs2dzyz3b298"; depends=[gee]; }; mmmgee = derive2 { name="mmmgee"; version="1.20"; sha256="0y3pwnc9h7y2l9cvgfl62nl1vnnkla2y8082jhdvxsb3mk88rgad"; depends=[Matrix mvtnorm]; }; mmod = derive2 { name="mmod"; version="1.3.3"; sha256="1dz6887mlqbagjj98wcabmxj9hvsz8pgsizy1fqkwjhhs44c62y4"; depends=[adegenet pegas]; }; - mmpca = derive2 { name="mmpca"; version="2.0.1"; sha256="05vir7hjv5dccfcizyn5n6qxx2p53111if16l44a7ifg5k599xj9"; depends=[digest gsl Rcpp RcppEigen]; }; mmpf = derive2 { name="mmpf"; version="0.0.5"; sha256="1w1ll1l7yzwb1wmlrcfpgqyzni7yb20kxy422y867hx2ndxlfwpz"; depends=[checkmate data_table]; }; mmpp = derive2 { name="mmpp"; version="0.6"; sha256="16aypjf4i0ya3qgxqrrg8y0xbnq1pnqky1dpkgln5q494hphyg91"; depends=[]; }; mmr = derive2 { name="mmr"; version="0.1.0"; sha256="0by2v47b4kpjhfxzzl6kc1shw7g46nwnww4rq333r2cywvrbkk4w"; depends=[]; }; @@ -12414,7 +12421,7 @@ in with self; { modelimpact = derive2 { name="modelimpact"; version="1.0.0"; sha256="16sy7r6bw5nzx77rd27ihgvp7bs39xchgid94ssklj6syc3kn2vq"; depends=[dplyr magrittr]; }; modelplotr = derive2 { name="modelplotr"; version="1.1.0"; sha256="0i1ssfcyl97zaxc9khdngrmsq9ydrmgv2nd7c6kc6i9z93jbkk4k"; depends=[dplyr ggfittext ggplot2 gridExtra magrittr RColorBrewer rlang scales]; }; modelr = derive2 { name="modelr"; version="0.1.8"; sha256="1i31nff7bqibk6r4hhd4j1vzwbyaf8493v0bjaagn36njmysfnw2"; depends=[broom magrittr purrr rlang tibble tidyr tidyselect vctrs]; }; - modelsummary = derive2 { name="modelsummary"; version="0.9.2"; sha256="1wmw309r5g2qh7z5ry3p8a1336abbs0pmrsh11civb8l861bs6m2"; depends=[broom checkmate generics glue insight kableExtra parameters performance rlang tables]; }; + modelsummary = derive2 { name="modelsummary"; version="0.9.4"; sha256="0dpzhvkcbc52ykxn7ccb6aapl65p7zzs82bg585g4clakldb9q6c"; depends=[broom checkmate generics glue insight kableExtra parameters performance rlang tables]; }; modeltests = derive2 { name="modeltests"; version="0.1.4"; sha256="0ii5sh8yz5yvf0gq41ia55dvbg8x9042x82j52ck6haxa0w8zpfy"; depends=[dplyr generics purrr testthat tibble]; }; modeltime = derive2 { name="modeltime"; version="1.1.0"; sha256="005jj1n6z343h9wspli7hxjmy2zxjkl7rkzc0bapl76j44rv022r"; depends=[cli dials doParallel dplyr forcats foreach forecast ggplot2 glue gt hardhat janitor magrittr parsnip plotly prophet purrr reactable rlang scales StanHeaders stringr tibble tidyr timetk workflows xgboost yardstick]; }; modeltime_ensemble = derive2 { name="modeltime.ensemble"; version="1.0.0"; sha256="01mi6pkjn97c77kyddz6xsyz11kchkdqy6672p8r96h0wy7530a1"; depends=[cli doParallel dplyr foreach generics glue magrittr modeltime modeltime_resample parsnip purrr recipes rlang rsample stringr tibble tictoc tidyr timetk tune workflows yardstick]; }; @@ -12446,7 +12453,7 @@ in with self; { molaR = derive2 { name="molaR"; version="4.5"; sha256="1mfb05cfg0jh60yxnmwhja6m38185r58kbz2ak0ikgaqd9lls07s"; depends=[alphahull rgl Rvcg]; }; molic = derive2 { name="molic"; version="2.0.3"; sha256="1qgb63wl5726mypv0f07wcf3aznl93vh045ghx66hiqj3kzfir2b"; depends=[doParallel ess foreach ggplot2 ggridges Rcpp]; }; molnet = derive2 { name="molnet"; version="0.1.0"; sha256="1ha1jyh3mmbv2zgr2zrrjmslwd1gyy04hvqjk4d3ap2kna35wlgk"; depends=[dplyr igraph magrittr readr Rfast rlang stringr tibble tidyr WGCNA]; }; - mombf = derive2 { name="mombf"; version="3.0.6"; sha256="1pan5xrd70qdl4rzjxbvyp48lmfabv4w4fx6srch7i17ifzc3yp5"; depends=[mclust mgcv mvtnorm ncvreg Rcpp RcppArmadillo survival]; }; + mombf = derive2 { name="mombf"; version="3.0.7"; sha256="07z6y1w87svifvx6fz5z08mfgz2hasyzkcw6kkysjb1n11pynvp5"; depends=[mclust mgcv mvtnorm ncvreg Rcpp RcppArmadillo survival]; }; momentchi2 = derive2 { name="momentchi2"; version="0.1.5"; sha256="1fv0jmwws4mkl9dsaybfpj29ncvqx2idsijgwz2qjblcg309a6k9"; depends=[]; }; momentfit = derive2 { name="momentfit"; version="0.2"; sha256="1xh3w3bwr2k4a79vma5cmz0l995nwbih0j7sgv3bjqdv4fn463d1"; depends=[sandwich]; }; moments = derive2 { name="moments"; version="0.14"; sha256="0f9y58w1hxcz4bqivirx25ywlmc80gbi6dfx5cnhkpdg1pk82fra"; depends=[]; }; @@ -12463,7 +12470,6 @@ in with self; { monobinShiny = derive2 { name="monobinShiny"; version="0.0.9"; sha256="0cd54zqj4y8ii2m5jhn5fz77zylfds030rhf709wlmgj96s0i750"; depends=[dplyr DT monobin shiny shinydashboard shinyjs]; }; monographaR = derive2 { name="monographaR"; version="1.2.1"; sha256="09fkcw13h7dx7j5vyp48fk6yzv9n64568zf2zvmm2c008jw3gkbm"; depends=[circular maptools png raster rmarkdown sp]; }; monomvn = derive2 { name="monomvn"; version="1.9-13"; sha256="1hm5qf28bh0q7f4zcjqx1qxw3l8hzkx349c1y3nwyfg7436vff6a"; depends=[lars MASS mvtnorm pls quadprog]; }; - monoreg = derive2 { name="monoreg"; version="1.2"; sha256="16n622j1j998a5fhn1c1qbzk5bfa5h09d95ry89gsd00p40hqg0a"; depends=[]; }; monotone = derive2 { name="monotone"; version="0.1.0"; sha256="1091xqa88gdp64b65610mfcknyz29kb980iqbvwnmlk12csszr1w"; depends=[]; }; monotonicity = derive2 { name="monotonicity"; version="1.3.1"; sha256="0bb6sl8yykry25a86qfggi36ggr1xrxcqsnzp6rb6na228hbwa2z"; depends=[lmtest MASS sandwich]; }; monreg = derive2 { name="monreg"; version="0.1.4"; sha256="15qgfhbd8ny05rjd1nn33ynh4i7m7wcy8az53jraghlk760bymwg"; depends=[]; }; @@ -12481,7 +12487,6 @@ in with self; { mortAAR = derive2 { name="mortAAR"; version="1.1.1"; sha256="0as88rl4v2shrfjqpvjajnb2wj00n3fj8mzj4g0ssywmccxji5ag"; depends=[magrittr Rdpack reshape2 tibble]; }; mortyr = derive2 { name="mortyr"; version="0.0.2"; sha256="0flihmkzw8dypp2ijq22cd3rka6h8cd1qdyr4zrs9cv5335nddmk"; depends=[httr jsonlite tibble]; }; mosaic = derive2 { name="mosaic"; version="1.8.3"; sha256="1y0isqbva0vi5zlx1xvixbq87n4xp66ljh43qnd0cpzaz0mn21cg"; depends=[broom dplyr ggdendro ggformula ggplot2 ggrepel ggridges ggstance glue gridExtra lattice latticeExtra leaflet MASS Matrix mosaicCore mosaicData readr rlang tidyr]; }; - mosaic_find = derive2 { name="mosaic.find"; version="0.1.2"; sha256="1fzgksh8sp701qjfrvjl2bg967qjkjpilxsfkrazhw71cgmzjgjl"; depends=[minpack_lm]; }; mosaicCalc = derive2 { name="mosaicCalc"; version="0.5.1"; sha256="0w5j7q314hzfzaw24ych2dhn255lnn3w0x4xr47qc1zclbmbny91"; depends=[ggformula magrittr MASS mosaic mosaicCore rlang]; }; mosaicCore = derive2 { name="mosaicCore"; version="0.9.0"; sha256="1h3ixzna4xy42rdnd89jj0v9q0riy3fnkd33z6l5c0zaidzm58fz"; depends=[dplyr MASS rlang tidyr]; }; mosaicData = derive2 { name="mosaicData"; version="0.20.2"; sha256="0h3f5fgzkzjfgf3ml0qa5j52921y6wy6jgggxmhs31bs8fd4srg4"; depends=[]; }; @@ -12587,6 +12592,7 @@ in with self; { mstknnclust = derive2 { name="mstknnclust"; version="0.3.1"; sha256="0bg38gnaf2jjva8l2wk862ch2cpqvw7szvvvpb2bnz02fp795p3g"; depends=[igraph]; }; mstrio = derive2 { name="mstrio"; version="11.3.0.1"; sha256="1qjqxrgy2amm0ikfixkqjix3d6jzh1y3abnbzq41ibl5qiz8pjxy"; depends=[crul data_table httr jsonlite openssl R6 rstudioapi shiny shinyjs]; }; msu = derive2 { name="msu"; version="0.0.1"; sha256="1vhh9725dbywmzihnmsq1jircpn91r8227j2f76fvma9rwss90p7"; depends=[entropy]; }; + mtb = derive2 { name="mtb"; version="0.1.0"; sha256="00r9lnircps1qz1pkd6ycswwf34qsxq7c92gvlsx0vi9mn501rdl"; depends=[ggplot2 htmltools labeling scales]; }; mtconnectR = derive2 { name="mtconnectR"; version="1.2.1"; sha256="0hl46h535mjqwgrhmxlixhfsych3blzcynffp55nr1ynrra4dn06"; depends=[data_table dplyr dtw ggplot2 lubridate magrittr plyr proxy stringr tidyr XML]; }; mthapower = derive2 { name="mthapower"; version="0.1.1"; sha256="0g6dn0qn7z6qc1gbzspy1n7b803427bc9fv5yqk7j8i1is1p8h94"; depends=[]; }; mtk = derive2 { name="mtk"; version="1.0"; sha256="0vq2xlxf86l92fl91qm8m4yfjyz1h8szmwxiics7sc9f0as0dkmy"; depends=[lhs rgl sensitivity stringr XML]; }; @@ -12629,7 +12635,7 @@ in with self; { multichull = derive2 { name="multichull"; version="1.0.0"; sha256="1gc7kxxlbanc6rmmbf6h85jf7kj0a78h23m5vwwqqliv018qsv2n"; depends=[igraph plotly shiny shinythemes]; }; multiclassPairs = derive2 { name="multiclassPairs"; version="0.4.3"; sha256="0mz15dl3fiznbnfjjmnhr9z6qh43mwafnkisd7svc3cb0lrbbjci"; depends=[Boruta caret dunn_test e1071 ranger rdist]; }; multicmp = derive2 { name="multicmp"; version="1.1"; sha256="0mz7ksc5h6dy95l3kbsamm191372blhlrj573krc57bj93lmp1a5"; depends=[numDeriv]; }; - multicolor = derive2 { name="multicolor"; version="0.1.4"; sha256="1yswpqm62cvpfj6zxrprbvamjah3zxhsvn19qgpqmha0098lx5g2"; depends=[cowsay crayon dplyr glue magrittr purrr stringi stringr tibble tidyr]; }; + multicolor = derive2 { name="multicolor"; version="0.1.5"; sha256="19l564rfsq0l9ipw6p5m1zp0ada2szmk1nxcsll95z4v5z2da2rv"; depends=[cowsay crayon dplyr glue magrittr purrr stringi stringr tibble tidyr]; }; multicon = derive2 { name="multicon"; version="1.6"; sha256="16glkgnm4vlpxkhf1xw1gl1q10yavx9479i21v29lldag35z8pqx"; depends=[abind foreach mvtnorm psych sciplot]; }; multicool = derive2 { name="multicool"; version="0.1-12"; sha256="0djacq0irfqz4nlnx238kja73yvr1n5qybbfyl6bw1n6qgcjhza8"; depends=[Rcpp]; }; multicross = derive2 { name="multicross"; version="2.1.0"; sha256="17hk03wsms9ij6hp6dw77cvvngdb5i66is6pcl1q21pyp327zqi6"; depends=[crossmatch MASS Matrix nbpMatching]; }; @@ -12701,7 +12707,7 @@ in with self; { mvPot = derive2 { name="mvPot"; version="0.1.5"; sha256="18kzlz42ridmwjrai6f598vvhmvk7gwyp869qjqclbf9jpc1xlcx"; depends=[evd gmp MASS numbers]; }; mvProbit = derive2 { name="mvProbit"; version="0.1-10"; sha256="1iy249mc5fi72l0lcvjrn40fn6q1m8hj8njcl0li2z6lzydifkd4"; depends=[abind bayesm maxLik miscTools mvtnorm]; }; mvQuad = derive2 { name="mvQuad"; version="1.0-6"; sha256="016477dhjdkqiadc631vzpbp967mn4yli6by3s1k348mlfirwsi3"; depends=[data_table statmod]; }; - mvSLOUCH = derive2 { name="mvSLOUCH"; version="2.6.5"; sha256="1ahzpfb178n5rxm1rh5qf0h66am5mfmx1g3cwaz27k7g5c00j20x"; depends=[abind ape Matrix matrixcalc mvtnorm ouch PCMBase TreeSim]; }; + mvSLOUCH = derive2 { name="mvSLOUCH"; version="2.7"; sha256="1vxhzpnpn53lm39d0qbq7fjyd888f375w6pnsl6lzxzqbm9kiy12"; depends=[abind ape Matrix matrixcalc mvtnorm ouch PCMBase TreeSim]; }; mvShapiroTest = derive2 { name="mvShapiroTest"; version="1.0"; sha256="0zcv5l28gwipkmymk12l4wcj9v047pr8k8q5avljdrs2a37f74v1"; depends=[]; }; mvabund = derive2 { name="mvabund"; version="4.1.12"; sha256="107pwv2bwird1a98chcnbld2wqj9prkf4pkncyrrp304zpdkkby1"; depends=[MASS Rcpp RcppGSL statmod tweedie]; }; mvbutils = derive2 { name="mvbutils"; version="2.8.232"; sha256="0awd0jy492ha321c20kmmgl20kqphdmrmswakc0rq6h8z9d55kdg"; depends=[]; }; @@ -12726,7 +12732,6 @@ in with self; { mvprpb = derive2 { name="mvprpb"; version="1.0.4"; sha256="1kcjynz9s7vrvcgjb9sbqv7g50yiymbpkpg6ci34wznd33f7nrxm"; depends=[]; }; mvrsquared = derive2 { name="mvrsquared"; version="0.1.2"; sha256="1x9ck55b5fiakvbn2nr3h75ksawjaijm2bg1xqavncl3cvlfqahl"; depends=[Matrix Rcpp RcppArmadillo RcppThread]; }; mvrtn = derive2 { name="mvrtn"; version="1.0"; sha256="0k0k76wk5zq0cjydncsrb60rdhmb58mlf7zhclhaqmli1cy697k8"; depends=[]; }; - mvst = derive2 { name="mvst"; version="1.1.0"; sha256="03q0kdychsmn4wcn50b6dqhxn4f2mjvrr5rac942xdv75w8qklc9"; depends=[MCMCpack mnormt mvtnorm]; }; mvtmeta = derive2 { name="mvtmeta"; version="1.1"; sha256="0s0s5922c5rs8cqk100nci3akqnhbvibm2n2gn8049v3qcyfajyb"; depends=[gtools]; }; mvtnorm = derive2 { name="mvtnorm"; version="1.1-3"; sha256="0j14q2bkc14v35s5k03sw44zsssrd2qjljlwzj014qxs74hk0kpz"; depends=[]; }; mvtsplot = derive2 { name="mvtsplot"; version="1.0-1"; sha256="0g5grrha77rsnkfasw5pxnpmkl7vgb728ms8apyg8xnbmgilg9vv"; depends=[RColorBrewer]; }; @@ -12754,7 +12759,7 @@ in with self; { naaccr = derive2 { name="naaccr"; version="1.0.0"; sha256="1hw74a2gjm3gxq0s0qlndhqw0vij6p31walz1ic741z7hqsffqq7"; depends=[data_table stringi]; }; nabor = derive2 { name="nabor"; version="0.5.0"; sha256="1nj39cdfwrmhgsi3cq8imxv3n6xzc1v6dzdb2cf2hybjk368v4s7"; depends=[BH Rcpp RcppEigen]; }; nadiv = derive2 { name="nadiv"; version="2.17.1"; sha256="1v1fbnps55pbaz0q88y8vrxjd503krymc7f8i0xx3yxgdxl56x8q"; depends=[Matrix]; }; - naijR = derive2 { name="naijR"; version="0.3.2"; sha256="1ad8cvabdz98mi21sc5phhgjl05wslb7yvjxzvx9hw4h0hpfy3bp"; depends=[lifecycle magrittr mapdata maps RColorBrewer rgdal rlang]; }; + naijR = derive2 { name="naijR"; version="0.3.3"; sha256="07f2n6xqy94pkii4ps39qcy27kfyms75n8cfykydgnxpb1apjlxg"; depends=[lifecycle magrittr mapdata maps RColorBrewer rgdal rlang]; }; naivebayes = derive2 { name="naivebayes"; version="0.9.7"; sha256="070m78d8hsbqfbapb6g8vvh91gyznqfdpqsaq6z3raps8zlybsag"; depends=[]; }; naivereg = derive2 { name="naivereg"; version="1.0.5"; sha256="1cxfl419pp7xh1xrad29gvpn6hm0rhk40vylj97ypndh6gmnynzz"; depends=[glmnet gmm grpreg ncvreg]; }; nakagami = derive2 { name="nakagami"; version="1.1.0"; sha256="0bxsg5k51x7qrw34l16da79ck212drkgvzgn9d5zanx5dwv5asl2"; depends=[assertthat]; }; @@ -12807,6 +12812,7 @@ in with self; { ncvreg = derive2 { name="ncvreg"; version="3.13.0"; sha256="04r7nf6516wi0bfxgk5rgbkw6qqa8aprsjivvgym19z9i6qaxanm"; depends=[]; }; ndjson = derive2 { name="ndjson"; version="0.8.0"; sha256="0lvzbgfi1sg4kya1mvv67z14qk3vz9q57x22qh57xq8ampdkg812"; depends=[data_table Rcpp tibble]; }; ndl = derive2 { name="ndl"; version="0.2.18"; sha256="0b235v6jf98rrqp5aqw3jkk7mq8dbqmhb758zbzza1mavh4n2k7s"; depends=[Hmisc MASS Rcpp]; }; + ndtv = derive2 { name="ndtv"; version="0.13.2"; sha256="0symd0rwzk8kcq7f0flbw3pnyigybgsypjaaq5b5p1pjm1dz0c8j"; depends=[animation base64 jsonlite MASS network networkDynamic sna statnet_common]; }; nearfar = derive2 { name="nearfar"; version="1.2"; sha256="116rq797a5fascirz8xg465fywjf40j1k5czryvqzpik0if0w00r"; depends=[car GenSA MASS nbpMatching]; }; neariso = derive2 { name="neariso"; version="1.0.1"; sha256="1b2gnws75kkqsi8mg9n0zzdaawx57a6zz47cswabj5m6nb09ikh8"; depends=[]; }; neat = derive2 { name="neat"; version="1.2.3"; sha256="0mdv47l50wzxnjfk1sway7gzpkyf57svqip16fqn0hrc1fsrifbn"; depends=[igraph]; }; @@ -12910,7 +12916,7 @@ in with self; { nima = derive2 { name="nima"; version="0.6.2"; sha256="0n8r8h1m0v0ssbpv6p32jby49f45qbicwr0awm7x054p48qk49cy"; depends=[assertthat dplyr ggplot2 ggthemes gridExtra gtools scales]; }; nimble = derive2 { name="nimble"; version="0.12.1"; sha256="1n37g22wj5zlvb8lgxh9gi7mk011lyrmg3kaibhcpj2858hz681m"; depends=[coda igraph R6]; }; nimbleCarbon = derive2 { name="nimbleCarbon"; version="0.1.2"; sha256="1cj1yik4knxniag12qr8hqxkqhcm5lhq8xw7g8iibv3rxq0jvkki"; depends=[coda doSNOW foreach nimble rcarbon snow]; }; - nimbleEcology = derive2 { name="nimbleEcology"; version="0.4.0"; sha256="1qpwjzxgcmfqfp2ccjkngvjymqsyxvhvcs43vvynx30xgrj3nzdm"; depends=[nimble]; }; + nimbleEcology = derive2 { name="nimbleEcology"; version="0.4.1"; sha256="1z4byxsana1fa2y7qhmiqbb8ana6zbas0cmbgcc703mqh1642jb2"; depends=[nimble]; }; nimbleSCR = derive2 { name="nimbleSCR"; version="0.1.3"; sha256="1859qai1cyh82cxa8kccrn36flw045j4dggzixi2m3k029gvjh15"; depends=[nimble]; }; nimbleSMC = derive2 { name="nimbleSMC"; version="0.10.0"; sha256="15abjhgq8mi8c079hfzwjyl5glchx606hciq2lsirkrbyvc7b23n"; depends=[nimble]; }; nipals = derive2 { name="nipals"; version="0.8"; sha256="0nv7h68hysxnpiinmgw6v3bz4ya53c0p96k9bfvcmalfb7hs8j5z"; depends=[]; }; @@ -12929,11 +12935,12 @@ in with self; { nlme = derive2 { name="nlme"; version="3.1-153"; sha256="1qw0sq64iybyidj0s8m76z4i1gxb1fn27s29i63fw5hvvy7aj9rx"; depends=[lattice]; }; nlmeODE = derive2 { name="nlmeODE"; version="1.1"; sha256="1zp1p98mzbfxidl87yrj2i9m21zlfp622dfnmyg8f2pyijhhn0y2"; depends=[deSolve lattice nlme]; }; nlmeU = derive2 { name="nlmeU"; version="0.70-3"; sha256="05kxymgybziiijpb17bhcd9aq4awmp5km67l2py9ypakivi0hc6l"; depends=[nlme]; }; - nlmixr = derive2 { name="nlmixr"; version="2.0.5"; sha256="1zx900il7vp0d26npd0fy5zny9f7484i6bwh3030drbqcsr34aqh"; depends=[backports BH brew dparser fastGHQuad ggplot2 lbfgsb3c magrittr Matrix minqa n1qn1 nlme Rcpp RcppArmadillo RcppEigen rex RxODE StanHeaders symengine]; }; + nlmeVPC = derive2 { name="nlmeVPC"; version="2.2"; sha256="0dkj0l0rkml6nydg3k04dzcp17sn59p3hnaqmnqa0arbzv0rsq8i"; depends=[dplyr ggplot2 Hmisc magrittr optimx plyr quantreg Rcpp RcppArmadillo tidyr timeDate]; }; + nlmixr = derive2 { name="nlmixr"; version="2.0.6"; sha256="18vlqny31im7402h10y7hqq31bki8rxj0x2z0wazk865prpab5k9"; depends=[backports BH brew dparser fastGHQuad ggplot2 lbfgsb3c magrittr Matrix minqa n1qn1 nlme Rcpp RcppArmadillo RcppEigen rex RxODE StanHeaders symengine]; }; nlmm = derive2 { name="nlmm"; version="1.0.1"; sha256="0q5vz4xqdb510i26zbcq4djcribn7h477akh8f56nzjgq231vhcq"; depends=[BH HI lqmm MASS Matrix mvtnorm nlme numDeriv Qtools Rcpp RcppArmadillo statmod]; }; nlmrt = derive2 { name="nlmrt"; version="2016.3.2"; sha256="1g0qq0a933ay65gkp04qgn2wqk6vw79pj2a228c2ski4rcmkjxyn"; depends=[]; }; nlnet = derive2 { name="nlnet"; version="1.4"; sha256="13lv4b6chsjrhimny3wc1y9ljgbxmm1byj4j04n4vj8icn87gyfd"; depends=[coin e1071 earth fdrtool igraph randomForest ROCR TSP]; }; - nloptr = derive2 { name="nloptr"; version="1.2.2.2"; sha256="0whkilb85k4wixvr3k7rygfw1rcs1fs9h8c18kz4p3y1k9hsj3p8"; depends=[]; }; + nloptr = derive2 { name="nloptr"; version="1.2.2.3"; sha256="1zznk9f2w2g02zqzay21k8xqzfvc6icxfzp6bx2wpd77sm7vf25g"; depends=[]; }; nlpred = derive2 { name="nlpred"; version="1.0.1"; sha256="05jna8hzd5v36a0dwag6zr8ms1pkryas3qarwb946bkxlslffp27"; depends=[assertthat bde cvAUC data_table np Rdpack ROCR SuperLearner]; }; nlraa = derive2 { name="nlraa"; version="0.98"; sha256="1vihk6k8582iwwn2gzpbs1amg8wbvpiar4diljvjx75172lc1s0h"; depends=[boot knitr MASS Matrix mgcv nlme]; }; nlreg = derive2 { name="nlreg"; version="1.2-2.2"; sha256="0gkcxg5m287axhvkl00xy26vidawhhb1ii1s13rh49v0yccwvvqh"; depends=[statmod survival]; }; @@ -13058,7 +13065,6 @@ in with self; { npmv = derive2 { name="npmv"; version="2.4.0"; sha256="04lfks2rlax59gxdnbgkpmk2vaax718z6hkgsvmyxf52iby6rvlr"; depends=[Formula]; }; npordtests = derive2 { name="npordtests"; version="1.2"; sha256="1axzcyy45h3rs67m0i3cvwbmza1mnmraxan9j4zlpxdd5x9nz4h8"; depends=[]; }; nppbib = derive2 { name="nppbib"; version="1.2-0"; sha256="1nn6wf89jhr3gy4rcd6px0cd5b1bsr7pbaxng4adba8n3yrss7vs"; depends=[]; }; - npphen = derive2 { name="npphen"; version="1.1-0"; sha256="0pbf9sqdapl5q09g1hj5hi4j2wigrd0b6s0gbv1gx4wn68alrals"; depends=[ks lubridate raster rgdal rts snow]; }; nprcgenekeepr = derive2 { name="nprcgenekeepr"; version="1.0.5"; sha256="1j6pfc694yf1m42a0fhlbh5wdbmgs61fswbw7083h69d2sr2zq05"; depends=[anytime futile_logger htmlTable lubridate Matrix plotrix readxl Rlabkey rlang shiny stringi WriteXLS]; }; npreg = derive2 { name="npreg"; version="1.0-6"; sha256="0a28hj4a8j46zyh483y4b5abwy18yl648rf99nj8a2blhdmipyla"; depends=[]; }; npregderiv = derive2 { name="npregderiv"; version="1.0"; sha256="1k873cs3rs15l13z8017n4anacandx7di6yk1zlamcc5p3vlh59n"; depends=[]; }; @@ -13126,6 +13132,7 @@ in with self; { obsSens = derive2 { name="obsSens"; version="1.3"; sha256="1vfm1mzsycwkqa39vf3fcdv1s6adps9hw1rxlvl8v9kq746hcabw"; depends=[]; }; observer = derive2 { name="observer"; version="0.1.2"; sha256="1027827k57qb4xppx0xxxffd1s3n7pz754irdx3v1v3piix8xi8m"; depends=[bazar bit dplyr lazyeval magrittr tibble]; }; occ = derive2 { name="occ"; version="1.1"; sha256="1aka29qqwbd494kvi15yyyqkb9hks4ky2gcvykxhx2drm2fnsn4g"; depends=[]; }; + occCite = derive2 { name="occCite"; version="0.5.1"; sha256="1swarf4nwqy20ffy5ff44zq804i8gb095b7p9zay0iccfz9bn2jm"; depends=[bib2df BIEN DBI dplyr ggplot2 htmltools httr leaflet lubridate RColorBrewer rgbif rlang RPostgreSQL stringr taxize tidyr viridis waffle]; }; occupancy = derive2 { name="occupancy"; version="1.2"; sha256="0j50vg1405n1hp72xqsq1hp3gdbfx5yq9w1zdv6dzjc6vjhbx00d"; depends=[matrixStats]; }; ocd = derive2 { name="ocd"; version="1.1"; sha256="06pyc352pvn85k76z9797gwk0ksbb3snvh6krysp68k3lcygq872"; depends=[]; }; oce = derive2 { name="oce"; version="1.4-0"; sha256="0224fgd51fchn8apdi6x0n3ycl6zdbwch9janmidqr0i01418d1v"; depends=[gsw Rcpp sf testthat]; }; @@ -13137,7 +13144,7 @@ in with self; { oclust = derive2 { name="oclust"; version="0.1.0"; sha256="005ml6vhi9rw6js2v4f1dc2ci8kcd7iwrkgbs4c1qxc836ygq0yx"; depends=[entropy mclust]; }; ocomposition = derive2 { name="ocomposition"; version="1.1"; sha256="0fk8ia95yjlvyvmjw7qg72piqa40kcqq9wlb3flc6a81pys1ycb5"; depends=[bayesm coda]; }; ocp = derive2 { name="ocp"; version="0.1.1"; sha256="0q52s8j3z3xwnma3sxx6019qxid66bf0a43w4g8xjagplwps57dx"; depends=[]; }; - ocs4R = derive2 { name="ocs4R"; version="0.2-1"; sha256="1phkji9p622v6hq309j7ggnc7gjhgwmm9zwys3nk9v0ac9k3g0dq"; depends=[curl httr jsonlite keyring openssl R6 XML]; }; + ocs4R = derive2 { name="ocs4R"; version="0.2-2"; sha256="1b2f05yrxj3j6f6bvj3aqsv6szp5c6i5cwkfjbsrj1ncny2f53zj"; depends=[curl httr jsonlite keyring openssl R6 XML]; }; od = derive2 { name="od"; version="0.3.1"; sha256="1fbx0w10wmd9f99kdigx4k21d8bsa8dfjzm9ibbf14z2908899ag"; depends=[sfheaders]; }; odbc = derive2 { name="odbc"; version="1.3.2"; sha256="1s1fbnkg6xlch94w5vwfwa9pa0rc722jbzckhkbl9m80z93hj4pm"; depends=[bit64 blob DBI hms Rcpp rlang]; }; odds_converter = derive2 { name="odds.converter"; version="1.4.8"; sha256="09s8pg55gpsxmrbimzg5rsr1n07la93781sar6vab5p9zn9zxgx4"; depends=[]; }; @@ -13184,7 +13191,6 @@ in with self; { oneclust = derive2 { name="oneclust"; version="0.2.1"; sha256="04nafy0bv3g5vjd5k7858lvs9rc141kzpblsdcb7sl4kfw76s11z"; depends=[magrittr Rcpp]; }; onehot = derive2 { name="onehot"; version="0.1.1"; sha256="1cdsz007wr054k5phvihhg4qx0fc039k2s6484m92kws8mb2ziix"; depends=[]; }; onelogin = derive2 { name="onelogin"; version="0.2.0"; sha256="06p3a8kaxmvsj8nn7dy8w6wv1jjw67is991hqg9q0fa20ifym3dl"; depends=[glue jsonlite magrittr R6 safer tibble]; }; - onemap = derive2 { name="onemap"; version="2.1.3"; sha256="0fwkr845zz0j8ccrwpksb28lly1rsgj3603ak1aqqgmlx6481p08"; depends=[ggplot2 MDSMap plotly Rcpp reshape2]; }; onemapsgapi = derive2 { name="onemapsgapi"; version="1.0.0"; sha256="11w3xkjxhjf0b78hfjxjk650giswaf1js471backz4pcb97gaigl"; depends=[dplyr furrr future httr purrr rlang stringr tidyr]; }; onepass = derive2 { name="onepass"; version="0.1.2"; sha256="1r8wk00aqc0sc7l6mmy1k4hkijfikynysrx5vvahbd6mlcdb3bmp"; depends=[jsonlite]; }; onewaytests = derive2 { name="onewaytests"; version="2.6"; sha256="05q2ir65x9pvsiim4l029hjhm12niiqjgk5rsx47i6vx23ffg8ir"; depends=[car ggplot2 moments nortest]; }; @@ -13207,10 +13213,10 @@ in with self; { oompaBase = derive2 { name="oompaBase"; version="3.2.9"; sha256="1cmw2s5dznmv675484jgvkzgvi6vhg0zbxsq6zhpqsisf672pjhl"; depends=[cluster]; }; oompaData = derive2 { name="oompaData"; version="3.1.1"; sha256="0by9qfxlx6fdmp12qnphlli5hdn5balvx4ckg64fw6vwa291g7b0"; depends=[]; }; ooplah = derive2 { name="ooplah"; version="0.1.0"; sha256="0hrbpidcrnvm14qdjhcz4j4im1caydxkj4k9zmqs7dq3wv10rgr9"; depends=[R6]; }; - opGMMassessment = derive2 { name="opGMMassessment"; version="0.2.0"; sha256="0mhqv8vqjnnjmn4ayykmvwkwh1k9y3xacna814c61jl14kg8jx0v"; depends=[AdaptGauss caTools cluster ClusterR DataVisualizations DistributionOptimization doParallel dplyr foreach ggplot2 mclust mixAK mixtools multimode NbClust rlang]; }; + opGMMassessment = derive2 { name="opGMMassessment"; version="0.2.1"; sha256="0yrr2cw84gv3fj7n4l1z2p7vpcias1f33mp3ca2ha0a0ljpfa4a4"; depends=[AdaptGauss caTools cluster ClusterR DataVisualizations DistributionOptimization doParallel dplyr foreach ggplot2 mclust mixAK mixtools multimode NbClust rlang]; }; opalr = derive2 { name="opalr"; version="3.0.2"; sha256="0nwa77l4d4zz3jxmfgm8h8k823lvcvjzbk3i6ahscrhzw2ky2phc"; depends=[httr jsonlite labelled mime progress]; }; opdisDownsampling = derive2 { name="opdisDownsampling"; version="0.7.0"; sha256="0vk99psbbks136h3md73g7w3rwlx3mgkx2lahmv536kf8v4fj2bp"; depends=[benchmarkme caTools doParallel foreach memuse pracma twosamples]; }; - openCR = derive2 { name="openCR"; version="2.1.0"; sha256="1399kmvxhb4rhhdv8ishi1bwsjma1fflz5hpl9qjqpvirr1aazb2"; depends=[abind BH MASS nlme plyr Rcpp RcppParallel secr stringr]; }; + openCR = derive2 { name="openCR"; version="2.2.0"; sha256="1xka4nzm12p05i75jx1qqg8qkmzyhwm02lrw0n860p13ydxcwgp7"; depends=[abind BH MASS nlme plyr Rcpp RcppParallel secr stringr]; }; openEBGM = derive2 { name="openEBGM"; version="0.8.3"; sha256="120lp7fy6abj6f8g6naq4018d0dfzz6bq3dlh0xdhd4iclb7pplv"; depends=[data_table ggplot2]; }; openMSE = derive2 { name="openMSE"; version="1.0.0"; sha256="15jp9hybnkwmnkcqawhpd3y3imq6wfxxzxzh90yx4cvzky36hf89"; depends=[crayon DLMtool MSEtool SAMtool]; }; openNLP = derive2 { name="openNLP"; version="0.2-7"; sha256="15yl74wv6w1d2wwpn1xlkkpam3c62977gnqal651fv623v29gg35"; depends=[NLP openNLPdata rJava]; }; @@ -13300,7 +13306,7 @@ in with self; { ordinalRR = derive2 { name="ordinalRR"; version="1.1"; sha256="1sfkq8gryyls22208ympw5scgb4jkd27pyc1qklw4x7cz9wfnfbp"; depends=[rjags]; }; ordinalgmifs = derive2 { name="ordinalgmifs"; version="1.0.6"; sha256="0axpndyyns649mwifq8f16l8n8x9nic8cv8l71ljyr2gwlm0nqz0"; depends=[survival]; }; ordinalpattern = derive2 { name="ordinalpattern"; version="0.2.0"; sha256="0nf7323wd8wm4qxlhr6cvm1l87rwfdr5c4qivhncy0m2n5vknc1c"; depends=[gtools mvtnorm]; }; - ore = derive2 { name="ore"; version="1.7.0"; sha256="0qhbv7bynisr0prv7h0yxsxff7qdxfqza7i06xi4vn360kxx6w9g"; depends=[]; }; + ore = derive2 { name="ore"; version="1.7.1.1"; sha256="0rs5r5h11x4l4nsbl4xqzbl4ahajd5374fq05abcmfjnjr9j64w5"; depends=[]; }; oreo = derive2 { name="oreo"; version="1.0"; sha256="1qzv6fjana5fx45msqasqfniiancsch6j8r1llh1xyg2wjhqdj23"; depends=[fftwtools ggplot2 gridExtra openxlsx pracma scales spectral]; }; ores = derive2 { name="ores"; version="0.3.2"; sha256="0xzc0d38z7h5ghab3kqsv0r2cl3888j7vn94p51xlwcbhnq10kip"; depends=[httr]; }; orf = derive2 { name="orf"; version="0.1.3"; sha256="19drrxvnh9y33p0g8pv9bhl6i8jpsdc7nkcpbpxbrsc5hs96dycp"; depends=[ggplot2 ranger Rcpp xtable]; }; @@ -13453,7 +13459,6 @@ in with self; { pan = derive2 { name="pan"; version="1.6"; sha256="1dk3jjj826p7xrz10qz04vyc068xnypg7bp0pj4c32z3da0xzh5d"; depends=[]; }; pander = derive2 { name="pander"; version="0.6.4"; sha256="1knjcr50xxns3w3kh15myjpsizn4d7fdqx071a4yj90imif07qjh"; depends=[digest Rcpp]; }; pandocfilters = derive2 { name="pandocfilters"; version="0.1-4"; sha256="1nlnvnvq3zwzpf6hnf8akl0w25kr7hrbr98rw5vgncxw35314xdp"; depends=[jsonlite]; }; - panelAR = derive2 { name="panelAR"; version="0.1"; sha256="1ka2rbl9gs65xh2y2m4aqwh5qj4szibjy101hqfmza9wmdh25gpq"; depends=[car]; }; panelView = derive2 { name="panelView"; version="1.1.5"; sha256="1pvi1b571sbqbhma7m277ppcv98c9yc720fr9pgqfdy8hswsd2rd"; depends=[ggplot2 gridExtra]; }; panelWranglR = derive2 { name="panelWranglR"; version="1.2.13"; sha256="0zj0m08518zi6xsa7qik61ys1qqa2lqiar4l7acclkw58w5zrmbc"; depends=[caret data_table Hmisc]; }; panelaggregation = derive2 { name="panelaggregation"; version="0.1.1"; sha256="0x8ldqb9216pclfvs4ymdpian43v2ydkyflpf0k6lcn35r04xfr6"; depends=[data_table]; }; @@ -13567,11 +13572,7 @@ in with self; { pbapply = derive2 { name="pbapply"; version="1.5-0"; sha256="0m8a0ygwl98cs0vcha5gs9f7z8whcplwxhravhs9bfp5hvigxzgg"; depends=[]; }; pbatR = derive2 { name="pbatR"; version="2.2-13"; sha256="01ra1ggdpxdl1xqjdh86qynr5gkgzw01ww6j9bwgx4mj20i6j1ha"; depends=[rootSolve survival]; }; pbbd = derive2 { name="pbbd"; version="1.0.0"; sha256="07g029qw5949500c879iv86zwg2fldqrz8wzfz335jmcinqimgj6"; depends=[ibd]; }; - pbdBASE = derive2 { name="pbdBASE"; version="0.5-3"; sha256="1f90bk1mp1s03177b9g5w5ni77jzrzc1pl3bjx0w0fjbjs1myn79"; depends=[pbdMPI pbdSLAP]; }; pbdMPI = derive2 { name="pbdMPI"; version="0.4-3"; sha256="1mxikhr0qfqksr62v5dxvzgqx07391p7ikjk9g2w4xzrzmxs8fc3"; depends=[float rlecuyer]; }; - pbdPROF = derive2 { name="pbdPROF"; version="0.4-0"; sha256="174jwrkvw5qz1430y6id01w1czlw45j1yw8a8dyw36knrmvmdz10"; depends=[]; }; - pbdRPC = derive2 { name="pbdRPC"; version="0.2-1"; sha256="1pz71zfs9qw96dj3h5mrm734vbbi4drlv9hrw91dbzm3a7jsxg4q"; depends=[]; }; - pbdSLAP = derive2 { name="pbdSLAP"; version="0.3-1"; sha256="1iwc5iw6q7r6p08yngczqlbqk779nsx2rmxc3fajzl6d73rprshl"; depends=[pbdMPI rlecuyer]; }; pbdZMQ = derive2 { name="pbdZMQ"; version="0.3-6"; sha256="0yy3x3l04vx13jbjbvkvsc8jdbf0abndjfknszdx3bi18b2chi4r"; depends=[]; }; pbivnorm = derive2 { name="pbivnorm"; version="0.6.0"; sha256="05jzrjqxzbcf6z245hlk7sjxiszv9paadaaimvcx5y5qgi87vhq7"; depends=[]; }; pbixr = derive2 { name="pbixr"; version="0.1.4"; sha256="098fwmar56l8w5r58grirqypdmc2c4hil7bi11z18llja62fncnw"; depends=[dplyr formatR jsonlite stringr textclean xml2 zip]; }; @@ -13609,6 +13610,7 @@ in with self; { pcr = derive2 { name="pcr"; version="1.2.2"; sha256="1lmgm8k3s7780ivrdj0zk1ninx7b5jffir6q5p2p47h62qqjmp5d"; depends=[ggplot2]; }; pcse = derive2 { name="pcse"; version="1.9.1.1"; sha256="1rb9146vjkf36vc5v3frykmsff7kp6qp1hhmj8pak583in4rz8f8"; depends=[]; }; pcsstools = derive2 { name="pcsstools"; version="0.1.1"; sha256="1vp4lflxzzgjfh1nkkfvnb74pjmbcdgrc1hlakjd8i5rw7swvr20"; depends=[gtools Rdpack]; }; + pct = derive2 { name="pct"; version="0.9.3"; sha256="1y3cmqirh003hyg80bnl0rpbcp9h9bzlv0lbjxq0wmvsb84hbqbn"; depends=[boot readr sf stplanr]; }; pcts = derive2 { name="pcts"; version="0.15"; sha256="1wl3hgj0sn9128vwcqin37jn5ww3na4g7r1isj39j6m2v76s3ndk"; depends=[BB gbutils lagged lubridate Matrix mcompanion PolynomF Rdpack sarima xts zoo]; }; pdR = derive2 { name="pdR"; version="1.7"; sha256="05rnyb9znb71ilr9kf62x30knby1rm0p4ain220wvb62vkz054d7"; depends=[boot car coefplot lmtest papeR plm sandwich]; }; pdSpecEst = derive2 { name="pdSpecEst"; version="1.2.4"; sha256="1sf2d7vh7a1qc0cq230an8pzg9qi9g640z0ql8x2pp9wfawfzn1f"; depends=[ddalpha multitaper Rcpp RcppArmadillo Rdpack]; }; @@ -13637,7 +13639,7 @@ in with self; { peakRAM = derive2 { name="peakRAM"; version="1.0.2"; sha256="0mj7f8jqkfky61xag2km0svbgvfmif3c1d8ccav6pv1963cg3cvv"; depends=[]; }; pearson7 = derive2 { name="pearson7"; version="1.0-3"; sha256="0vdhhds1lngaff7dkx4b1az3syqw8b22w2jskcrw0m49wp1dbbha"; depends=[]; }; pec = derive2 { name="pec"; version="2021.10.11"; sha256="1cb63qrc1lwds5kv55jd2mibsw49bpfaj066kwhs1wgby25h8ydi"; depends=[foreach lava prodlim riskRegression rms survival timereg]; }; - pecora = derive2 { name="pecora"; version="0.1.0"; sha256="0a45i5vpdz9m14c64hsvwdp625vaxc77lvmckgjvnn31ca089gp0"; depends=[matrixStats Rcpp RcppArmadillo]; }; + pecora = derive2 { name="pecora"; version="0.1.1"; sha256="0l66brd5d24hn279ck785jy4qnxiv9lc3d1czh4f3l25d0hj99xi"; depends=[matrixStats Rcpp RcppArmadillo]; }; pedSimulate = derive2 { name="pedSimulate"; version="1.2.1"; sha256="1hahflnzpg7mbsli9prjqs4jwbqji2cyvr9k4alb129bzg335aq4"; depends=[]; }; pedbuildr = derive2 { name="pedbuildr"; version="0.2.1"; sha256="19yzfg5jms2qnww4p8npmk9815hrgqsbd49h8pi62yy9kjqnccai"; depends=[forrel glue pedprobr pedtools]; }; pedgene = derive2 { name="pedgene"; version="3.3"; sha256="0y6kr5ad4fmxljsj0czs9h1dkz63wvqiira9ibgsf0707xb0vh7f"; depends=[CompQuadForm kinship2 Matrix survey]; }; @@ -13684,7 +13686,6 @@ in with self; { pergola = derive2 { name="pergola"; version="1.0"; sha256="1650ipp2b455xdkznwm7bnxvimad7nbyr9i1lg2vdh64j1qfh7gl"; depends=[seriation]; }; periscope = derive2 { name="periscope"; version="1.0.0"; sha256="0idf6bwl1n03padgzvid4bkyq00qb59bi3dg0hpvax5fvyjfm9hh"; depends=[DT fresh ggplot2 lubridate shiny shinyBS shinydashboard writexl yaml]; }; perm = derive2 { name="perm"; version="1.0-0.2"; sha256="182ac1y91yzb34zwdcmx5fdfr5z0cha0gx2bgk36gwxhgfc994kj"; depends=[]; }; - permGPU = derive2 { name="permGPU"; version="0.15"; sha256="1bxydc5dw7ka45k6ban35d5xb1dw9yq9480qns8b39cc0x3acmhc"; depends=[Biobase foreach RUnit survival]; }; permGS = derive2 { name="permGS"; version="0.2.5"; sha256="0d2kp3c1fmnjjmsvc2qwh6m66yqvy2vrrxgv1fj2i4clsbavfa0y"; depends=[coin survival]; }; permPATH = derive2 { name="permPATH"; version="1.2"; sha256="074knhcn88nzisfl20ais71micnnjqbm5lqp6jfkqj176r2af7cq"; depends=[R2HTML xtable]; }; permimp = derive2 { name="permimp"; version="1.0-2"; sha256="1zq513bkallkkqghjilvgc5iw0pcglrdyc0r2sns4ck07a3q378j"; depends=[ipred party randomForest survival]; }; @@ -13693,8 +13694,8 @@ in with self; { permutations = derive2 { name="permutations"; version="1.0-9"; sha256="1701jah8i9frw3cbqlri2l56lansw54l3pp9h1fy36a8ahhcllkg"; depends=[magic numbers partitions]; }; permute = derive2 { name="permute"; version="0.9-5"; sha256="0ra8p5mf2590azrkas8z2ry7mif77xqxd29n4zgyi5vll225726j"; depends=[]; }; permutes = derive2 { name="permutes"; version="2.2"; sha256="0cmpngzl76v7mjdwk9b70a60gycsx9kw7laxswdh6j9wi0jcpp2a"; depends=[plyr]; }; - perry = derive2 { name="perry"; version="0.3.0"; sha256="0g54m7cg9vkdrfqk339ylas6riyjp8scr6mwjnss1gcvqj378gs8"; depends=[ggplot2]; }; - perryExamples = derive2 { name="perryExamples"; version="0.1.0"; sha256="0di0fl2ay3kza5alv6841qqjx1s2mbpn2gdl3f6aa7hfj20c9zym"; depends=[lars perry quantreg robustbase]; }; + perry = derive2 { name="perry"; version="0.3.1"; sha256="0c3i9dc6hfdjfkjq2p630w6l1pz21mmqb8p0ikv6m159cfl3i3nq"; depends=[ggplot2]; }; + perryExamples = derive2 { name="perryExamples"; version="0.1.1"; sha256="1abfrri0lq7iwdlk1qfzlq8378xpyvzfwcg1i18rmndfwsyyihjp"; depends=[lars perry quantreg robustbase]; }; persiandictionary = derive2 { name="persiandictionary"; version="1.0"; sha256="0rgi36ngpiax3p5zk4cdgf3463vgx7zg5wxscs2j7834yh37jwax"; depends=[]; }; personalized = derive2 { name="personalized"; version="0.2.6"; sha256="1pakg7c8h3cijm3n8x433isbmwa78gmg42xpkdvpabv2fx7jlday"; depends=[foreach gbm ggplot2 glmnet kernlab mgcv plotly survival]; }; personalized2part = derive2 { name="personalized2part"; version="0.0.1"; sha256="104flqjyf0x0619msyc0vlkg61znvhf0v86fsdpksdxkgwb7wv7j"; depends=[foreach HDtweedie personalized Rcpp RcppEigen]; }; @@ -13719,7 +13720,7 @@ in with self; { pgee_mixed = derive2 { name="pgee.mixed"; version="0.1.0"; sha256="115vvpv54q80486i3xs2yhmfyx476cf4g1v43q6l7wj3jwzcrvbg"; depends=[copula mvtnorm Rcpp RcppArmadillo]; }; pgirmess = derive2 { name="pgirmess"; version="1.7.0"; sha256="1kh5vca2bnaa5yzazbhmhyw097x1v7b61cr6zxk3lxn9w6vqdhiy"; depends=[boot maptools rgdal rgeos sp spdep splancs]; }; pglm = derive2 { name="pglm"; version="0.2-3"; sha256="16ghdgnpwyqgfa6z6gc93bw933dvazb3alv1867cbn7qnp2gaj3j"; depends=[Formula maxLik plm statmod]; }; - pgmm = derive2 { name="pgmm"; version="1.2.4"; sha256="1bpknwfzw6rmag5s7ajg1glx46wkby5ahyya76ksa7r8vz4ffs3z"; depends=[]; }; + pgmm = derive2 { name="pgmm"; version="1.2.5"; sha256="09cpjvhjdncrjs7v2hy6xdqq9p57gd1n8gmaq0p3jmhvrbnsgpfy"; depends=[]; }; pgnorm = derive2 { name="pgnorm"; version="2.0"; sha256="1k9z7pvmranr8m62v7amc0pj6lwzh3wqi79gg3mflifn1mr6c057"; depends=[]; }; pgraph = derive2 { name="pgraph"; version="1.6"; sha256="1mfpyj4ahs5szkzzv5fs9g26651vcnign3mkfgp23g8nlrs50cqa"; depends=[energy glasso glmnet SAM]; }; pgsc = derive2 { name="pgsc"; version="1.0.0"; sha256="1y4szqn1jhp3yn8q738dpbhnqcqk45vgbmczamai154w3wb0qai7"; depends=[nloptr Rcpp RcppArmadillo reshape2]; }; @@ -13942,11 +13943,11 @@ in with self; { pmcgd = derive2 { name="pmcgd"; version="1.1"; sha256="1pybzvyjmzpcnxrjsas06diy3x83i1r5491s6ccyr63l56hs55d5"; depends=[mixture mnormt]; }; pmclust = derive2 { name="pmclust"; version="0.2-1"; sha256="0wldf0bj406qxmlc7hsbamiak7qcwf8ixng9dfkswh511m3p05jd"; depends=[MASS pbdMPI]; }; pmd = derive2 { name="pmd"; version="0.2.1"; sha256="14xra1d6qx6gxnpiwfsxz200qhmm7s4zy2j8h5kwbvbpnykdyr5c"; depends=[data_table enviGCMS igraph RColorBrewer]; }; - pmetar = derive2 { name="pmetar"; version="0.3.1"; sha256="1545gm88p2ym1zj8i4m50f6n8z7g3mx2jqk27kpj81m86kkdbnym"; depends=[dplyr httr lubridate magrittr RCurl stringr tidyr]; }; + pmetar = derive2 { name="pmetar"; version="0.3.2"; sha256="1vx80pzwks0czvsyh48svvm2gb4jyz1m2r5l60dnia07kpz9wrjd"; depends=[curl dplyr httr lubridate magrittr RCurl stringr tidyr]; }; pmhtutorial = derive2 { name="pmhtutorial"; version="1.5"; sha256="1hcw8hwpsivbhz86lnzy08q9n8vahnq8f7rmi4xkmg6b44582cqx"; depends=[mvtnorm Quandl]; }; pmlbr = derive2 { name="pmlbr"; version="0.2.0"; sha256="1f0i52ws8ywkz4c0s3ax3qa3qinqhv1k9qlghkama3b027zkl9zn"; depends=[FNN]; }; pmledecon = derive2 { name="pmledecon"; version="0.1.0"; sha256="0bpfx3lkg7wl7b189gl1m2xz72zna98wiw98yx3hvk6ndv55jy03"; depends=[rmutil splitstackshape]; }; - pmml = derive2 { name="pmml"; version="2.4.0"; sha256="1mfjpvj2gdkkr3ji0l9x65vsx2y8313ak26cj1dim8c9j26snamw"; depends=[stringr XML]; }; + pmml = derive2 { name="pmml"; version="2.5.0"; sha256="1z2a829q7698rj171gkm624jdjcbs6c71gczd2hcxfi25xspyhw4"; depends=[stringr XML]; }; pmmlTransformations = derive2 { name="pmmlTransformations"; version="1.3.3"; sha256="0315kb5x04pidpzr04yaxyynp0mz4ilzp7vkspq4agjkds5hyc88"; depends=[]; }; pmpp = derive2 { name="pmpp"; version="0.1.1"; sha256="1srmkih6zsyf8yf1f045xy1afcz0if6nf1ncslgrq6rgm7330lkw"; depends=[data_table dplyr ggplot2 magrittr MASS Matrix minqa moments plm pracma]; }; pmr = derive2 { name="pmr"; version="1.2.5"; sha256="0dq97dfjmgxlhr3a2n20vyyzfmamcicw878hdxpw31lw02xs6yls"; depends=[]; }; @@ -13960,6 +13961,7 @@ in with self; { poLCA = derive2 { name="poLCA"; version="1.4.1"; sha256="0bknnndcxsnlq6z9k1vbhqiib1mlzlx4badz85kc7a3xbrdrfs9f"; depends=[MASS scatterplot3d]; }; pocketapi = derive2 { name="pocketapi"; version="0.1"; sha256="0n4fyx4ldm14zy3pz7gygwhahi3p25misvxlmy8l9kqqr51fg26a"; depends=[dplyr glue httr jsonlite magrittr purrr tibble usethis]; }; pocrm = derive2 { name="pocrm"; version="0.13"; sha256="0d4iggxjbl95fz872q9v1wr30nga39sdd5dvwa2zrrm73ak81cz3"; depends=[dfcrm nnet]; }; + podcleaner = derive2 { name="podcleaner"; version="0.1.1"; sha256="1mgkcmayysm2amz2a94mzsyxa0kgqk4y43qsy4hp81j31ij8chkv"; depends=[dplyr fuzzyjoin magrittr progress purrr readr rlang stringi stringr tibble tidyr]; }; poems = derive2 { name="poems"; version="1.0.1"; sha256="15987nz7gx94lrkyizg0jdzkjnib5hykla7xrkg5fi0i6cch40bl"; depends=[abc doParallel foreach gdistance geosphere lhs metRology R6 raster trend]; }; pogit = derive2 { name="pogit"; version="1.2.0"; sha256="1kap1cpfp0k2vm7w4kjfja37n9z3j7ppiwvsdxl6bgpkf7kcnkp2"; depends=[ggplot2 logistf plyr]; }; poibin = derive2 { name="poibin"; version="1.5"; sha256="1sxryvwwz6ldsnkzdy56p8c895s5yvpcai9ndyjv1x5q3l05wf9v"; depends=[]; }; @@ -14028,6 +14030,7 @@ in with self; { popPCR = derive2 { name="popPCR"; version="0.1.1.1"; sha256="03ppgjmdp3rivlgqs7aq082j4rzndf9fw5aq8mzci7fvjkj7whc4"; depends=[mvtnorm]; }; popRF = derive2 { name="popRF"; version="1.0.0"; sha256="0w3w1ffyy5b8glviib7ryjqzhmfp5aw6am3z8qpvis6l745p7vgh"; depends=[doParallel foreach gdalUtils plyr quantregForest randomForest raster]; }; popReconstruct = derive2 { name="popReconstruct"; version="1.0-6"; sha256="0nmf93dy2qf7z9mafpy99ry53aapbxlismn7drn732r8gvravapx"; depends=[coda]; }; + popbayes = derive2 { name="popbayes"; version="1.0"; sha256="01p0highanjqdslbavykx67ss7w7f5xwczqx1l5pw4gkrvngm992"; depends=[R2jags usethis]; }; popbio = derive2 { name="popbio"; version="2.7"; sha256="02dbb2sinn1n8a9dg8lvf35sc8hb14c90mjymz2gk64xdysf0m2j"; depends=[]; }; popdemo = derive2 { name="popdemo"; version="1.3-0"; sha256="0760ajqaq822m0j092gdqzhgw1mk413k09mmmwyzb0jzj6bd15q3"; depends=[expm MCMCpack]; }; popgenr = derive2 { name="popgenr"; version="0.2"; sha256="164dhizka0yadzihbjqkfs5p0hknw966mq0grigs7r9ppbq9kajh"; depends=[]; }; @@ -14094,7 +14097,7 @@ in with self; { prabclus = derive2 { name="prabclus"; version="2.3-2"; sha256="0hg4d7y1w18jpgvw10z8833bbbcnlkwiasx0wh6iwa2pnnybq8gl"; depends=[MASS mclust]; }; pracma = derive2 { name="pracma"; version="2.3.3"; sha256="0g5r5ir5k43ba0ngnsanp108k479l2dnsjd5w6idk1d34ivqs7yg"; depends=[]; }; pragma = derive2 { name="pragma"; version="0.1.3"; sha256="1n30a346pph4d8cj4p4qx2l6fnwhkxa8yxdisx47pix376ljpjfx"; depends=[]; }; - prais = derive2 { name="prais"; version="1.1.1"; sha256="027qsa1nc680bcs61dlyz0wwap5pgxdfzasg9ny37a55hnikxid5"; depends=[lmtest sandwich]; }; + prais = derive2 { name="prais"; version="1.1.2"; sha256="16h3771lr6vn0g92bfpdq7r3wpdkspbhmrl5948p4isc5qxy2cgx"; depends=[lmtest pcse sandwich]; }; praise = derive2 { name="praise"; version="1.0.0"; sha256="1gfyypnvmih97p2r0php9qa39grzqpsdbq5g0fdsbpq5zms5w0sw"; depends=[]; }; praktikum = derive2 { name="praktikum"; version="0.1"; sha256="0kkydgglvqw371fxh46fi86fmdndhwq1n8qj0ynbh2gz1cn86aw1"; depends=[]; }; praznik = derive2 { name="praznik"; version="9.0.0"; sha256="0k8dk2jbinr3n8hgfsxkyv8739y9y3v4kcxwrq9dxzpiasx3p5r6"; depends=[]; }; @@ -14303,6 +14306,7 @@ in with self; { psychotools = derive2 { name="psychotools"; version="0.7-0"; sha256="11gybrf9d90nbqfm76qr2z9y4bn498j1csg5zir38k5inpw5bk3x"; depends=[]; }; psychotree = derive2 { name="psychotree"; version="0.15-4"; sha256="0ni8ajl0hzl4spm71c0myhv16an00j0brb4gyzg2fgkqs6rm34l2"; depends=[Formula partykit psychotools]; }; psychrolib = derive2 { name="psychrolib"; version="2.5.2"; sha256="0d43zhpl5ik90hqpdy62x7rwmxag3z1mdrn3cl1whr04rmymhk20"; depends=[Rcpp]; }; + psychtm = derive2 { name="psychtm"; version="2021.1.0"; sha256="1qx3ks23wyi7c53p05jq2w18qz0kym0j43japz9sgj6zyh0c5649"; depends=[coda label_switching Rcpp RcppArmadillo RcppProgress rlang tibble]; }; psymetadata = derive2 { name="psymetadata"; version="1.0.0"; sha256="16xcjxa8h7x58ssvdmiy1byxxmppmxjgf9m5xacm6w1nyw062jd5"; depends=[Rdpack]; }; psymonitor = derive2 { name="psymonitor"; version="0.0.2"; sha256="09288w2bk5jhnbyj516jqn5qb33yqqg5kqbg6ylqk7anlq2yg2sl"; depends=[doParallel foreach magrittr]; }; psyntur = derive2 { name="psyntur"; version="0.1.0"; sha256="0dh7vdj3ynsxibcf0wmh5h4yknijg78azjzlma25glihpgd2nbbw"; depends=[dplyr effsize ez fastDummies formula_tools GGally ggplot2 ggthemes magrittr plyr psych purrr rlang tidyr tidyselect]; }; @@ -14312,7 +14316,7 @@ in with self; { ptf = derive2 { name="ptf"; version="0.0.1"; sha256="1s9nzn823z2capil83vcfs7frg8f6bpygx8aw1zz4sacnhvryr52"; depends=[Matrix plyr rARPACK Rcpp RcppArmadillo]; }; ptinpoly = derive2 { name="ptinpoly"; version="2.8"; sha256="126chp92ha48agx5i819bzdij79zbgj32msijvaid3zhxjx7qy1j"; depends=[misc3d]; }; ptm = derive2 { name="ptm"; version="0.2.4"; sha256="00szxlil7657ciwh17jkk1mv28m5h1la97ksgn3glypf5z7hsrd4"; depends=[bio3d Biostrings curl httr igraph jsonlite muscle RCurl seqinr xml2]; }; - ptmixed = derive2 { name="ptmixed"; version="1.0.3"; sha256="03nkbwjybryifv1wk6a923w6pgfb10f9nkda2f2kfxpyi5hwqrzs"; depends=[aod GLMMadaptive lme4 matrixcalc moments mvtnorm numDeriv tweeDEseq]; }; + ptmixed = derive2 { name="ptmixed"; version="1.1.0"; sha256="08pi6bj5mdg3jahb035ld41b0hlx16bmfwf51i8ayxhf71paayq5"; depends=[aod GLMMadaptive lme4 matrixcalc moments mvtnorm numDeriv tweeDEseq]; }; pts2polys = derive2 { name="pts2polys"; version="0.1.3"; sha256="0rmgryv0vds20npvaqvvwrhrx0grfcz9qwdy2w3bx945r0chhw39"; depends=[Rcpp]; }; ptspotter = derive2 { name="ptspotter"; version="1.0.1"; sha256="1yppjmsxx01n9x0a0bbqsaxjixvrzyjq3112p94igg2xpp6h6cvl"; depends=[beepr log4r pryr stringr this_path]; }; ptsuite = derive2 { name="ptsuite"; version="1.0.0"; sha256="1df273p8v6zvhy2jj6imhjigwj77grx6sxqmg0sidxwqny5d1d9c"; depends=[Rcpp]; }; @@ -14433,7 +14437,7 @@ in with self; { qrmtools = derive2 { name="qrmtools"; version="0.0-14"; sha256="1gjaq6i0xhsivcmivbn4xxsqasbvf95p1w0rzpycxzgcfarxwwx3"; depends=[ADGofTest lattice Quandl quantmod rugarch xts zoo]; }; qrng = derive2 { name="qrng"; version="0.0-8"; sha256="1yagh7llrg208mdmwyq7gy4c7h20hj4s5ikp6nc3q8pl7avmq3jc"; depends=[copula randtoolbox]; }; qrnn = derive2 { name="qrnn"; version="2.0.5"; sha256="0ligz67kbfg5cmvacnb7y0ms1v0c7mbvbcfsxyfiz543ppl3xn1v"; depends=[]; }; - qs = derive2 { name="qs"; version="0.25.1"; sha256="0qzrhc5jsygj813k956b00h4b6haynz44rk6a4v34fv4ywq9ba7w"; depends=[RApiSerialize Rcpp stringfish]; }; + qs = derive2 { name="qs"; version="0.25.1.1"; sha256="077i181vh0izvsdy2d4366yir0ajg531g6d1s7ab044ssbphg38x"; depends=[RApiSerialize Rcpp stringfish]; }; qsimulatR = derive2 { name="qsimulatR"; version="1.0"; sha256="0d2al6rnsyj58jhwczn2rx09b007s2yjihpk7i65law7v8dmxiaf"; depends=[]; }; qsort = derive2 { name="qsort"; version="0.2.3"; sha256="1xvp29dijfa2207wyw3z09rmffn61fngfy0f00qjk284n1jnnvrg"; depends=[cowplot ggplot2 gridExtra purrr]; }; qst = derive2 { name="qst"; version="0.1.2"; sha256="0f5c4088y9c5fxyy2dyfkp049lnzvys3zyizazxsa82xwkwsbc8a"; depends=[DBI dbplyr dplyr magrittr RSQLite tibble]; }; @@ -14527,7 +14531,7 @@ in with self; { r2dii_match = derive2 { name="r2dii.match"; version="0.0.11"; sha256="01iwb2jhbx8xllzplw0vvqhq7xp9xn560gdv1xbshmr6aklgsgzg"; depends=[data_table dplyr glue magrittr purrr r2dii_data rlang stringdist stringi tibble tidyr tidyselect]; }; r2dii_plot = derive2 { name="r2dii.plot"; version="0.2.0"; sha256="0df2grafjwpy9cd2lfgiy20rlhsrmr87miw9vxw8k12722iq9jms"; depends=[dplyr forcats ggplot2 ggrepel glue magrittr r2dii_data rlang scales]; }; r2glmm = derive2 { name="r2glmm"; version="0.1.2"; sha256="0iim92blpa59vgz97c2pi05yhbjjmaffdbkbmk5kplfb2vmazgiy"; depends=[afex data_table dplyr ggplot2 gridExtra lmerTest MASS Matrix mgcv pbkrtest]; }; - r2mlm = derive2 { name="r2mlm"; version="0.3.0"; sha256="15pn0pyn18bw1k120n29wssbvynq3ay0cxhxhj3zfw5ps4879liq"; depends=[broomExtra dplyr lme4 magrittr nlme rlang rockchalk stringr tidyselect]; }; + r2mlm = derive2 { name="r2mlm"; version="0.3.1"; sha256="0iiqn97mg4m3wrm7v1barbly2kr89ch8sg7lap26kwwir6f1jc1i"; depends=[broomExtra dplyr lme4 magrittr nlme rlang rockchalk stringr tidyselect]; }; r2pmml = derive2 { name="r2pmml"; version="0.26.0"; sha256="15npzyjd5n1zysffhcfp4c0wykk2nhwgs8j2x8fqyn9cv2l8abjk"; depends=[]; }; r2pptx = derive2 { name="r2pptx"; version="0.1.0"; sha256="12p3018b514kk1yxm1xyc0835j34zvpr1fz8k5rpiz30fbxjip58"; depends=[glue officer]; }; r2r = derive2 { name="r2r"; version="0.1.1"; sha256="0vp0ak88m3ssca8b8kxf9w6qkxsdy0qs6cngrr9gqvbrnx0gh9j6"; depends=[digest rlang]; }; @@ -14545,7 +14549,7 @@ in with self; { r6methods = derive2 { name="r6methods"; version="0.1.0"; sha256="18q1qd7hkxbk0yilqdk17cp7qbl4c71jv10z732539wcmy8svb1v"; depends=[dplyr glue magrittr miniUI purrr rstudioapi shiny stringr]; }; rADA = derive2 { name="rADA"; version="1.1.9"; sha256="0p47nqm8mki03pq5gzc2r5vx4vixs6hpf7am1fvadgi2bn2jrcl2"; depends=[car dplyr e1071 forestplot ggplot2 gridExtra Hmisc knitr lme4 lmerTest matrixStats openxlsx reshape2 stringr tidyr]; }; rARPACK = derive2 { name="rARPACK"; version="0.11-0"; sha256="12h2y46xcfldhjdmm960swgn9b23zvkj5vg2bi42s9qxwgi02d63"; depends=[RSpectra]; }; - rATTAINS = derive2 { name="rATTAINS"; version="0.1.2"; sha256="1v6zf6f6fxa4qj4n5jrc6xc8rvhs219x1rdxgqk016fyjdarqb2i"; depends=[checkmate crul dplyr fauxpas fs hoardr janitor magrittr purrr rlang rlist tibble tidyjson tidyr]; }; + rATTAINS = derive2 { name="rATTAINS"; version="0.1.3"; sha256="0zc710ydpxda5vbyw1d29abrk94nj253qylxrirr89mhlv5fnac1"; depends=[checkmate crul curl dplyr fauxpas fs hoardr janitor magrittr purrr rlang rlist tibble tidyjson tidyr]; }; rAltmetric = derive2 { name="rAltmetric"; version="0.7.0"; sha256="1vbvjv273vg3pi30vxxa2bivlajfsbqrzflk3payp6ym9myi27mg"; depends=[httr jsonlite rlist]; }; rAmCharts = derive2 { name="rAmCharts"; version="2.1.13"; sha256="1c9gz7jmkh8gfaq8lmcb66kavdldnlc3x1mc1c72di8zxcpgzprc"; depends=[data_table htmltools htmlwidgets knitr pipeR yaml zoo]; }; rAmCharts4 = derive2 { name="rAmCharts4"; version="1.5.0"; sha256="0z7dq8nhivrf3lhwv0zwyjnalnbl23qw02fg0ml883ns9rdi78rz"; depends=[base64enc htmltools htmlwidgets jsonlite lubridate minpack_lm reactR shiny stringr xml2]; }; @@ -14576,7 +14580,6 @@ in with self; { rFSA = derive2 { name="rFSA"; version="0.9.6"; sha256="1fxd194iq8jnlsnj76mjq2f6db7ln641qwfsf5v63kx3qqhn8x5s"; depends=[hash rPref tibble tidyr]; }; rFerns = derive2 { name="rFerns"; version="5.0.0"; sha256="1yw3np5iamnr7f3nrd507dkyz76nxmzdpinwxncv87yw30g6gnkq"; depends=[]; }; rForest = derive2 { name="rForest"; version="0.1.4"; sha256="0vk9sfnbzpjqh7mr3qwi5awlh8qc0h1i6qwbyv7qj72apy05s2d8"; depends=[alphashape3d geometry rgl sp]; }; - rGEDI = derive2 { name="rGEDI"; version="0.1.11"; sha256="0fkvy4p82jyfbbfymkfbrdyh13hk6a6wghk2myb64p5nhz8kv7iz"; depends=[bit64 curl data_table fs getPass ggplot2 hdf5r jsonlite lazyeval raster RColorBrewer rgdal rgeos sp]; }; rGammaGamma = derive2 { name="rGammaGamma"; version="1.0.12"; sha256="1051ah6q11qkxj1my4xybbzc8xcqkxfmps8mv2his5cyfllwidbs"; depends=[gsl]; }; rGroovy = derive2 { name="rGroovy"; version="1.3"; sha256="172vm4diygzi4ipmw8bl03k0x3aps0h1vkvwvw539kamy7xb5w98"; depends=[rJava]; }; rHealthDataGov = derive2 { name="rHealthDataGov"; version="1.0.1"; sha256="0lkjprss15yl6n9wgh79r4clip3jndly2ab1lv4iijzxnxay099d"; depends=[bit64 httr jsonlite]; }; @@ -14605,7 +14608,7 @@ in with self; { rNeighborGWAS = derive2 { name="rNeighborGWAS"; version="1.2.4"; sha256="1j2rafli0ns34ms5s8zjxwyvlxhl88r5krw0qqzc3igd9sc0mjvn"; depends=[gaston Matrix RcppParallel]; }; rNeighborQTL = derive2 { name="rNeighborQTL"; version="1.1.2"; sha256="1balbky8jyvyn2v56dvx7b80gpys40pfslqrsv25sywmp0cqy68p"; depends=[gaston Matrix qtl]; }; rODE = derive2 { name="rODE"; version="0.99.6"; sha256="0l518ghfw6283kckqcbh45a35vd73njy05v3dwghhhjdj7v3km8b"; depends=[data_table]; }; - rPACI = derive2 { name="rPACI"; version="0.2.1"; sha256="1kzn4yzhaikcm87rzfrimr6nl8v7amrrgxy7wrj3mqbbmklk8ag5"; depends=[bnlearn ggplot2 ggpubr rlang tidyr]; }; + rPACI = derive2 { name="rPACI"; version="0.2.2"; sha256="10i9lx8h67x3ldysjqgfi6dqbclj7pwfg15wxzr2vw3qzsjyb9cz"; depends=[bnlearn ggplot2 ggpubr rlang tidyr]; }; rPAex = derive2 { name="rPAex"; version="1.0.1"; sha256="1v85qy8fg6vf1fqqqawzw4i9sfaihdqzbs0h91hpqbzkc4v7n2bb"; depends=[agricolae raster]; }; rPackedBar = derive2 { name="rPackedBar"; version="0.2.2"; sha256="1nh0kvj4bqkinczj8llcgy63ibsnk9vgsvm0vqg8g526x0vffdma"; depends=[data_table plotly scales shiny]; }; rPanglaoDB = derive2 { name="rPanglaoDB"; version="0.2.1"; sha256="1ykzih3idgp2yhbw4039hhhzv0nmrmn3wx2c4dxmgp5qzhrg42nf"; depends=[Matrix pbapply Seurat XML xml2]; }; @@ -14724,7 +14727,7 @@ in with self; { rareGE = derive2 { name="rareGE"; version="0.1"; sha256="0v3a2wns77q923ilddicqzg0108f8kmfdnsff1n65icin7cfzsny"; depends=[MASS nlme survey]; }; rareNMtests = derive2 { name="rareNMtests"; version="1.1"; sha256="13r2hipqsf8z9k48ha5bh53n3plw1whb7crpy8zqqkcac8444b2z"; depends=[vegan]; }; rarms = derive2 { name="rarms"; version="1.0.0"; sha256="11wjxd3pxvjv1j2nz26l8f0kykk9w6lf08izhivfngp63dk2akns"; depends=[jsonlite]; }; - rasciidoc = derive2 { name="rasciidoc"; version="3.1.4"; sha256="0wy16zaz4b8yjjb9vwxwz327z3r56nmsxr63rfcammfflz0hv3d9"; depends=[checkmate document fritools gert highr knitr reticulate]; }; + rasciidoc = derive2 { name="rasciidoc"; version="3.2.0"; sha256="1bs0rnqprgzlx5n41l72q27cgrxs88q28cgzjpia5yyawjvniqls"; depends=[checkmate document fritools gert highr knitr reticulate]; }; rasclass = derive2 { name="rasclass"; version="0.2.2"; sha256="1lsmv8kh519mz3szb4k9s17fz1480cw0i4qk12givhhm2rpzjy50"; depends=[car e1071 nnet randomForest RSNNS]; }; rassta = derive2 { name="rassta"; version="1.0.1"; sha256="03abcgg5310avlwmphr6inw1dnyj2g9rp1jzry9wfi3yshpf15b4"; depends=[cluster data_table dplyr DT foreach GGally ggplot2 histogram KernSmooth kohonen plotly raster rlang scales shiny stringdist stringi terra]; }; raster = derive2 { name="raster"; version="3.5-2"; sha256="0wixw1ixnmcmkwczpj8m90c76727zira2rl4ighashggydkm2mlr"; depends=[Rcpp sp terra]; }; @@ -14752,7 +14755,6 @@ in with self; { raven_rdf = derive2 { name="raven.rdf"; version="0.2.0"; sha256="12jy3md6d1qwzkks5iljn4h0iv5lj3n39ll7r3fvrxjwh7afvw7r"; depends=[]; }; raw = derive2 { name="raw"; version="0.1.8"; sha256="1y2vhpgigzkd2xyj3986wlzm1g3pp99w6fspmhlff5czd73g16is"; depends=[]; }; rawKS = derive2 { name="rawKS"; version="0.1.0"; sha256="1yiw9imhgij49qbm9hk6psb73zngqmxxwnaxq144ydwb7fbk6j0z"; depends=[dplyr ggplot2 magrittr ROCR tidyr]; }; - rawr = derive2 { name="rawr"; version="0.1.3"; sha256="0k0x1pmxs73j6dmjg33n4hhwjwzpnhzbmmmjza6kw7hj6lfmipx4"; depends=[clipr dplyr jsonlite rvest stringr xml2]; }; raws_profile = derive2 { name="raws.profile"; version="0.1.0"; sha256="04f7wk7x9j3rb6nn3zqss9vw0h9a4vpcjyilc2vqy0fm2by41xkg"; depends=[stringr tibble withr]; }; rayimage = derive2 { name="rayimage"; version="0.6.2"; sha256="1zhs4whbxvn8gn0ddxpd8qgnv2f75nlvrz6x5y0ac516bgrapz5z"; depends=[jpeg magrittr png progress Rcpp RcppArmadillo]; }; rayrender = derive2 { name="rayrender"; version="0.21.2"; sha256="0s88p9yqm2xxvwpxbnmhs3yay1gd904dgsik9fy6551cym1asl1n"; depends=[assertthat decido magrittr png progress purrr raster rayimage Rcpp RcppThread spacefillr tibble]; }; @@ -14774,7 +14776,7 @@ in with self; { rbin = derive2 { name="rbin"; version="0.2.0"; sha256="18g6s4m0yc1bzrymk8km553kcwi4vj16b6mxw2lmv48z7243iq87"; depends=[data_table ggplot2]; }; rbioacc = derive2 { name="rbioacc"; version="1.0.2"; sha256="15244p3k0cmv9fwcffnwzl130wn14l4axkzr29lvic9v4zx28f1q"; depends=[BH GGally ggmcmc ggplot2 loo Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders stringr testthat zoo]; }; rbioapi = derive2 { name="rbioapi"; version="0.7.4"; sha256="1w3mahdrqk76g5ygyabvb8kypycwp91k5njwsqhzyfgj2yr67qkn"; depends=[httr jsonlite]; }; - rbiom = derive2 { name="rbiom"; version="1.0.2"; sha256="0zg1ibxz3h9mmb4s2gwlliahni6dgqqn849pcxcyhpzyc81av85y"; depends=[magrittr openxlsx plyr R_utils Rcpp RcppParallel rjson slam]; }; + rbiom = derive2 { name="rbiom"; version="1.0.3"; sha256="13nma1s3p4bzh8mvikrnmkqyyrx9axvxavq6fyk2w0j804w1qzcg"; depends=[magrittr openxlsx plyr R_utils Rcpp RcppParallel rjson rlang slam]; }; rbiouml = derive2 { name="rbiouml"; version="1.11"; sha256="1g1q6xc8x8y71ji75c5fl35sxxss964xmhcqlriybb5zc38m1dh0"; depends=[RCurl RJSONIO]; }; rbison = derive2 { name="rbison"; version="1.0.0"; sha256="0g586hsqci4amci10zjq6xpjvxfjr6rv5i63vp85v3z6bkwfamwr"; depends=[crul data_table dplyr ggplot2 jsonlite mapproj plyr sp tibble]; }; rbit = derive2 { name="rbit"; version="1.0.0"; sha256="09ywr711gv0vgfims2vfcxk3rnd0iadzlksil0q9159yarapfc59"; depends=[R6]; }; @@ -14805,10 +14807,10 @@ in with self; { rcdk = derive2 { name="rcdk"; version="3.6.0"; sha256="0v3i1402hrlp3sap3ryjd63gac8wbcwj7lfa3smk1agqy659glcx"; depends=[fingerprint iterators itertools png rcdklibs rJava]; }; rcdklibs = derive2 { name="rcdklibs"; version="2.3"; sha256="16ijvzsc1irpz1z2xd82i2saafsvpn0x5lr54c5gx9bfb35gacyp"; depends=[rJava]; }; rchallenge = derive2 { name="rchallenge"; version="1.3.4"; sha256="0i402p6ccjn10ix5nln30pab5nd78hg5q4ivvgc4i99nx7aq0xpx"; depends=[knitr rmarkdown]; }; - rcheology = derive2 { name="rcheology"; version="4.1.1.0"; sha256="1rrnzyxy8x8xy63rrpi6jpmfwww131q4naaslyi5kgj7fys5irzz"; depends=[]; }; + rcheology = derive2 { name="rcheology"; version="4.1.2.0"; sha256="0vsjcg83jvvmwggqh073325wsar6dfa7diikkvq3k0jlfwkcrs4n"; depends=[]; }; rchess = derive2 { name="rchess"; version="0.1"; sha256="0qnvvvwcl02rmqra9m7qnhy40cbavswbq6i0jm47x6njmr1gpfhy"; depends=[assertthat dplyr ggplot2 htmlwidgets plyr R6 V8]; }; rchie = derive2 { name="rchie"; version="1.0.2"; sha256="1m89mwq5f81yr2vc3wvnxkpm04bad11sx5fllcd3yy8ilghmbfp6"; depends=[jsonlite V8]; }; - rcites = derive2 { name="rcites"; version="1.1.0"; sha256="185s26pzgg3y3d890q5mk1rn75yipd6kfgnhbafnqgk7qy09v8lx"; depends=[cli httr jsonlite]; }; + rcites = derive2 { name="rcites"; version="1.2.0"; sha256="1lyahgpjskzqlmjnz14kkkrl30by1nzzi02wsf0rfskbdhmwc5in"; depends=[cli curl httr jsonlite]; }; rcitoid = derive2 { name="rcitoid"; version="0.1.0"; sha256="11iqdj1q983w28fh17rqvmhs41ks09b24p408nl7hz4iqg9c7lpi"; depends=[crul curl fauxpas jsonlite]; }; rclipboard = derive2 { name="rclipboard"; version="0.1.3"; sha256="087ih0b3bizgknccy7gm47r1v9wjmj2fb8i4bp4rszd2kdcbwh29"; depends=[shiny]; }; rcmdcheck = derive2 { name="rcmdcheck"; version="1.4.0"; sha256="1l696byn3kjq2xvz4wxybzaj6ink85h4lz3a35v2132ba5yyzm5v"; depends=[callr cli curl desc digest pkgbuild prettyunits R6 rprojroot sessioninfo withr xopen]; }; @@ -14846,9 +14848,10 @@ in with self; { rdmulti = derive2 { name="rdmulti"; version="0.8"; sha256="0hkcvcndfma9sbw6brmj29ka52kn3axhwk1cix3vw5ganwnmpaqh"; depends=[ggplot2 rdrobust]; }; rdnb = derive2 { name="rdnb"; version="0.1-4"; sha256="069xlfdjjyl4a9clxj8m5gfplmll6qiqzms59mnsql3b74jamxi3"; depends=[brew httr stringr xml2]; }; rdoc = derive2 { name="rdoc"; version="0.1.0"; sha256="0ac6413jyrr7m25z30n3bpiafsvjx38ik6rrjzsiqxrfp41j6l9x"; depends=[cli crayon prettycode R6]; }; + rdomains = derive2 { name="rdomains"; version="0.2.0"; sha256="048wdddgg2zaarpmn07dya74xy10831lba1zpq9kjnqk8v286jrw"; depends=[aws_alexa curl devtools glmnet httr jsonlite Matrix rlang urltools virustotal XML xml2]; }; rdoxygen = derive2 { name="rdoxygen"; version="1.0.0"; sha256="16907969w66xvy62k45rw10qfv4x8z6jkkc6i97vppkgnlvf4d4b"; depends=[devtools]; }; rdpower = derive2 { name="rdpower"; version="2.0"; sha256="1yw563nz7dc24ba7vh0w85gp3rhr2ddx3qkpfdr1iwq8a8g1hg01"; depends=[rdrobust]; }; - rdrobust = derive2 { name="rdrobust"; version="1.0.6"; sha256="09qffxmihnw7dpdb7x92190drcfgsv66ahwvqxbzy6shqsvs4yhs"; depends=[ggplot2 MASS]; }; + rdrobust = derive2 { name="rdrobust"; version="1.0.7"; sha256="0j7qalrbc1jxnzwjwm2hyakfjxai97kzw4aprzygdx9f838al9pf"; depends=[ggplot2 MASS]; }; rdrop2 = derive2 { name="rdrop2"; version="0.8.2.1"; sha256="02rhcq1vn349ddjkqamxb0wjb3z3m4wzkvin1mprcz4fzrjxgbdr"; depends=[assertive digest dplyr httr jsonlite magrittr purrr]; }; rdryad = derive2 { name="rdryad"; version="1.0.0"; sha256="00f1qwsbwg5jggm5b83nhk1lxyw272rv2kg77bcwqvlf3074c3mz"; depends=[crul curl hoardr jsonlite mime tibble zip]; }; rdtLite = derive2 { name="rdtLite"; version="1.3"; sha256="1njn6x2k03qxmb96d5sl7jz0xq5wabbixn9xy55ypw8g1k0cgmd1"; depends=[curl digest gtools jsonlite knitr provSummarizeR provViz rlang rmarkdown sessioninfo stringi XML]; }; @@ -14987,7 +14990,7 @@ in with self; { relevent = derive2 { name="relevent"; version="1.1"; sha256="10wy6qbg91bq8cs5fas50nnfw80rpsgr8bqpfbsxcmsh43ilpgg9"; depends=[coda sna trust]; }; relgam = derive2 { name="relgam"; version="1.0"; sha256="0bfsk2pc3vdk8wgdfpz80x0f9p0z37sq114swqn6z11p298hwf2x"; depends=[foreach glmnet]; }; reliaR = derive2 { name="reliaR"; version="0.01"; sha256="000nafjp386nzd0n57hshmjzippiha6s6c4nfrcwl059dzmi088i"; depends=[]; }; - reliabilitydiag = derive2 { name="reliabilitydiag"; version="0.1.3"; sha256="06g2p7a47yc8kcd3g2jg08jf9x3xa0byp56w7jgfknv80m4d9mk0"; depends=[bde dplyr ggExtra ggplot2 magrittr purrr rlang tibble tidyr vctrs]; }; + reliabilitydiag = derive2 { name="reliabilitydiag"; version="0.2.0"; sha256="0qgvyjc512gwr0rbgxkkf9ipvxfl9y07215f1pdk15xhzkk94m53"; depends=[bde dplyr ggExtra ggplot2 magrittr purrr rlang tibble tidyr vctrs]; }; relimp = derive2 { name="relimp"; version="1.0-5"; sha256="0ydn82g8xdqzhf34187080bbpcpw1zdjbj2i3dv1d6d35vvprb5c"; depends=[]; }; relliptical = derive2 { name="relliptical"; version="0.1.0"; sha256="122gv5pckx87hsczfqsac6nwh54a6y1ka066aab2zlrhrlx0wx2y"; depends=[FuzzyNumbers_Ext_2 matrixcalc Rcpp RcppArmadillo RcppEigen RcppNumerical Rdpack Ryacas0]; }; relsurv = derive2 { name="relsurv"; version="2.2-5"; sha256="0bqmr493jdk3vkw386gs2bk688bja5yg14ax1rb88bf6i6fqqcy8"; depends=[date survival]; }; @@ -15066,7 +15069,7 @@ in with self; { retractcheck = derive2 { name="retractcheck"; version="1.0.0"; sha256="1c4p8afh9g359s560sswcys3manc0lqvk0aqgvd09p4rpzls2dm7"; depends=[httr plyr textreadr]; }; retriever = derive2 { name="retriever"; version="0.2.0"; sha256="0bvfpcm1j6k1rlag42d4xg87nks50n51cjx8rklbl5s7m0y8a29i"; depends=[pbapply preprocessCore]; }; retrodesign = derive2 { name="retrodesign"; version="0.1.0"; sha256="173jrpzasimplv8vbm8gzpl8aibnsjkgvhz1hd75is0b2l8gnbxy"; depends=[]; }; - retroharmonize = derive2 { name="retroharmonize"; version="0.1.17"; sha256="13fyc0wq3jqjbdzl0pncf7s452mvz94z7h2da107kfaqrim9vbgs"; depends=[assertthat dplyr fs glue haven here labelled magrittr pillar purrr rlang snakecase stringr tibble tidyr tidyselect vctrs]; }; + retroharmonize = derive2 { name="retroharmonize"; version="0.2.0"; sha256="10fwmm91p3dgad99a7imkg9cjlk0gy2bkpmzgfr6s9bp07splj6i"; depends=[assertthat dplyr fs glue haven here labelled magrittr pillar purrr rlang snakecase stringr tibble tidyr tidyselect vctrs]; }; retrosheet = derive2 { name="retrosheet"; version="1.1.4"; sha256="13vicafx3z83wrxhc6d7bk6bd0m49qcd5li2b4j0bgzavrx6clxs"; depends=[httr rvest stringi stringr xml2]; }; retry = derive2 { name="retry"; version="0.1.0"; sha256="1yfcfvszfjnvvnjcywgchyiyj3jk9nmvk3h40g6bc24xapfkfl2p"; depends=[later rlang]; }; reutils = derive2 { name="reutils"; version="0.2.3"; sha256="09dhf4s7wz3anrkzqi16abx64gk8ck2142kfd8pv71mjy3x548l7"; depends=[assertthat jsonlite RCurl tibble XML]; }; @@ -15279,7 +15282,7 @@ in with self; { rnr = derive2 { name="rnr"; version="0.2.1"; sha256="1z9bab3qmq8d79bcvjzldbxlah2w8mqp2ifd0cn1348dafwa0dhi"; depends=[assertthat purrr]; }; rnrfa = derive2 { name="rnrfa"; version="2.0.4"; sha256="0sy64bgb94ksgcy37kmj61iphf66i0jpx0qlrcsr24zr92syc1n2"; depends=[curl ggmap ggplot2 httr jsonlite lubridate rgdal sp tibble zoo]; }; roadoi = derive2 { name="roadoi"; version="0.7.1"; sha256="1diprwir4agp2ifcgfsla1kd5m0y5cnc7ixhh6pqdvlgax5wx96w"; depends=[dplyr httr jsonlite miniUI plyr purrr rlang shiny tibble tidyr]; }; - roahd = derive2 { name="roahd"; version="1.4.2"; sha256="1lq4aafag5cd9h6jffk6gv4m7v4p4y7wkdyxazw6fdwiqy8g4wvn"; depends=[dplyr magrittr robustbase scales]; }; + roahd = derive2 { name="roahd"; version="1.4.3"; sha256="089klcgxry6b8z30h1ssy024lqxqm1bz6qs2kx95qjfl8xgwlwm0"; depends=[dplyr ggplot2 magrittr plotly robustbase scales]; }; robCompositions = derive2 { name="robCompositions"; version="2.3.1"; sha256="13m03r2mcs6srn3hk46lrjhyv5px9jyvqsqbxri1h79f31bji58b"; depends=[car cluster cvTools data_table e1071 fda fpc GGally ggfortify ggplot2 kernlab MASS mclust pls Rcpp RcppEigen reshape2 robustbase robustHD rrcov tidyr VIM zCompositions]; }; robFitConGraph = derive2 { name="robFitConGraph"; version="0.1.0"; sha256="092nc0xnjs2zxd9ij0dl1xggb8mwl8nly284yjhhygmwlwsvhzxm"; depends=[MASS mvtnorm Rcpp]; }; robber = derive2 { name="robber"; version="0.2.2"; sha256="053yiwjlsg7z9p5l60wddm1wf5wni54a28yp6x4hbfkgaazvby02"; depends=[blockmodels ggplot2 GREMLINS igraph magrittr pammtools partitions purrr]; }; @@ -15330,6 +15333,7 @@ in with self; { rockchalk = derive2 { name="rockchalk"; version="1.8.144"; sha256="07dp1n155b9gfvk8l30h6bhjbhbylsjxfzns08mryn4mxj3nqpnb"; depends=[carData kutils lme4 MASS]; }; rockr = derive2 { name="rockr"; version="1.0.0"; sha256="190xaxcbb7miqw5mxyfqqlb2vzacifc8a7a3cqfdlpxra4d4jc25"; depends=[httr jsonlite mime progress]; }; roclang = derive2 { name="roclang"; version="0.1.2"; sha256="139m7biiidcbc3a9nnp5qpdysszrzldhf6dp64rfshp3rjpfssiq"; depends=[dplyr magrittr purrr rex rlang roxygen2 stringr tibble tidyr]; }; + rocnp = derive2 { name="rocnp"; version="0.1.0"; sha256="1xqlmihhgjn6g3kabgmdx1qn18sxqd43sq3nb39i8pbwvaxhjqjr"; depends=[dplyr glue magrittr purrr rlang stringr tibble]; }; rococo = derive2 { name="rococo"; version="1.1.7"; sha256="1fp3kk5j9kc0vyr50rlbsxjc9p3qz5137sifxsbd297p7zj1fcs2"; depends=[Rcpp]; }; rocsvm_path = derive2 { name="rocsvm.path"; version="0.1.0"; sha256="1pd59bzcz96sxpp725pqa7pjh2gdrfapbilp4wccjkf5290zw56v"; depends=[quadprog svmpath]; }; rodd = derive2 { name="rodd"; version="0.2-1"; sha256="01zrkw4lr21vxk2grfc37iyrcipfdcj5m0i7gnxsvs435y9fqagd"; depends=[Matrix matrixcalc numDeriv quadprog rootSolve]; }; @@ -15447,7 +15451,7 @@ in with self; { rsatscan = derive2 { name="rsatscan"; version="0.3.9200"; sha256="00vgby24jknq8nl7rnqcwg7gawcxhwq8b7m98vjx2hkqx39n4g21"; depends=[foreign]; }; rsbp = derive2 { name="rsbp"; version="0.1.0"; sha256="0aardngvj9apn8q5vhfpv67rf7d5iqb7xdq7rh8xmgr8341fvbgc"; depends=[dplyr lubridate magrittr purrr reshape2 tibble tidyr xml2]; }; rscala = derive2 { name="rscala"; version="3.2.19"; sha256="1wq0wrdbh0gi0bx4m9526qlbjm7nxxqgc17ikdx5mrhcy2f61hjk"; depends=[]; }; - rscc = derive2 { name="rscc"; version="0.1.0"; sha256="1l5dwlwkfww97nwwdlcqla9cbsip8p3wqdi0a5z14ngznkzy3n4k"; depends=[crayon formatR highlight igraph]; }; + rscc = derive2 { name="rscc"; version="0.2.0"; sha256="0k1p0w90p2qyjhwfgh35ya02hxqm12h3fkyc6wfxbsxiklkw61vz"; depends=[crayon formatR highlight igraph tm]; }; rscimark = derive2 { name="rscimark"; version="1.0"; sha256="1jsjz4d5bnxb90qqzz42m4nyvm8d8w8bs0m1r5g2n78zmckqb8vy"; depends=[checkmate]; }; rsconnect = derive2 { name="rsconnect"; version="0.8.24"; sha256="19p4w9dmhsl1vdvwv3hfmd5qzf4296g0x878idfajvrx0wgfysyg"; depends=[curl digest jsonlite openssl packrat rstudioapi yaml]; }; rscontract = derive2 { name="rscontract"; version="0.1.2"; sha256="0gn0xcvg9nj6m97g4si6bgmgaj6hxpicz8yig7n84jnczh6w510x"; depends=[]; }; @@ -15547,7 +15551,7 @@ in with self; { rumidas = derive2 { name="rumidas"; version="0.1.1"; sha256="1hnkjj689kn7sx5gvjrh1x3n5pickb9d0adb5n0grjq4j5ympbns"; depends=[highfrequency lubridate maxLik Rdpack roll tseries xts zoo]; }; runes = derive2 { name="runes"; version="0.1.0"; sha256="1s2vhwya434q70j4aq4qbds8wivscc5cyldr5pch7p41nqj0j7aw"; depends=[]; }; runexp = derive2 { name="runexp"; version="0.2.1"; sha256="0pcxwz0kpfrcsfalwlcwp81k3dyc9rqm9rba25xkp51bwz5scv64"; depends=[doParallel foreach]; }; - runjags = derive2 { name="runjags"; version="2.2.0-2"; sha256="16h3ym5r2002kjzxa3q4k8yczpmfckdzcaa4wvmikbvgsf1yppz5"; depends=[coda lattice]; }; + runjags = derive2 { name="runjags"; version="2.2.0-3"; sha256="0a5m1nlyrph22s0crmajacy4n4fw9j0bmg1srkgfrygcryqc07qv"; depends=[coda lattice]; }; runner = derive2 { name="runner"; version="0.4.1"; sha256="1iic84ab6gbikc2qfqhdg5i48i8hldz59l0k4466n8v6ha2k7hxi"; depends=[Rcpp]; }; runonce = derive2 { name="runonce"; version="0.2.3"; sha256="04lmzw9ldc3b6zdc7sr3mrfiam24372j11l5p1y9i2zjb9rxk1nn"; depends=[bigassertr urltools]; }; runstats = derive2 { name="runstats"; version="1.1.0"; sha256="0n9348af60j8a2mwgbafabspb4nm45ry92zlzmynja06zyx8lb2d"; depends=[fftwtools]; }; @@ -15618,6 +15622,7 @@ in with self; { sadists = derive2 { name="sadists"; version="0.2.4"; sha256="00iqgwqfia4mybg4v66kb368gydr103zmr8ka9y4j8rmwkg5j9kq"; depends=[hypergeo orthopolynom PDQutils]; }; sads = derive2 { name="sads"; version="0.4.2"; sha256="1j6vdjvpnbqp4kwbvhcl8p51ln29mmk9n150718wsqlifb8d1lw9"; depends=[bbmle GUILDS MASS poilog VGAM]; }; sae = derive2 { name="sae"; version="1.3"; sha256="1ncrlzgnga9pfa2j8x1y6axl2665rp08aff98zrim6gq6n6yap8z"; depends=[lme4 MASS]; }; + saeHB = derive2 { name="saeHB"; version="0.1.0"; sha256="1ny22mbf22zlpzl9kh8gxkldi49slw584nvwwi94rvs1wa8j9b8x"; depends=[coda rjags stringr]; }; saeME = derive2 { name="saeME"; version="1.2.4"; sha256="02yf5rf2kavwl3icfnsjg0kxmifrcc7v4j5jsfrfa8ssfbwcivhn"; depends=[ClusterR dplyr expm MASS]; }; saeRobust = derive2 { name="saeRobust"; version="0.2.0"; sha256="1bdfrsm59xwkga0kxl3r5n83mhhkyzj7gplrgx26gyflashyd1zc"; depends=[aoos assertthat ggplot2 magrittr MASS Matrix memoise modules pbapply Rcpp RcppArmadillo spdep]; }; saeSim = derive2 { name="saeSim"; version="0.10.0"; sha256="0nh8x2v0g8i0rjq4s5q0ayhyxhl5p0126plmd4vnnhaifm6pn0q3"; depends=[dplyr functional ggplot2 MASS parallelMap spdep]; }; @@ -15668,7 +15673,7 @@ in with self; { sankeywheel = derive2 { name="sankeywheel"; version="0.1.0"; sha256="1sigj4jz13qj4s8vxk0dl2xsddqgyfxabj8yggkasawm7pryvbyy"; depends=[htmlwidgets]; }; sanon = derive2 { name="sanon"; version="1.6"; sha256="0h3l1dzgkddvb3vzg7pcgwrgidphy73jys2h49v84nbfvqr6l85z"; depends=[]; }; santaR = derive2 { name="santaR"; version="1.0"; sha256="10g4z951mpxw9d21s5f6zwfch5xs9vx812fb0wyrbw9s8drmlbkh"; depends=[doParallel foreach ggplot2 gridExtra iterators pcaMethods plyr reshape2 shiny shinythemes]; }; - santoku = derive2 { name="santoku"; version="0.5.0"; sha256="1l69jnlzcjkwr8wqmgf40nkf48a58m50c6cwn8sh0vd71bmi75qm"; depends=[assertthat lifecycle Rcpp vctrs]; }; + santoku = derive2 { name="santoku"; version="0.6.0"; sha256="1kwyc9c8fhfxr6kh9wkrw1ywqx5hjrp0dfvl97qzcly0g28432fs"; depends=[assertthat lifecycle Rcpp vctrs]; }; sanzo = derive2 { name="sanzo"; version="0.1.0"; sha256="1fqsx2mgjsy6vjvsp2avi2i5cw7cjs2p53l1z6hb3bzid3067s87"; depends=[]; }; saotd = derive2 { name="saotd"; version="0.3.0"; sha256="11ql731w3rc4spmd2ii52r49sxymxkf7wj2ngdvb8pcs4idar059"; depends=[dplyr ggplot2 ggraph igraph ldatuning lubridate magrittr reshape2 rtweet scales stringr tidyr tidytext topicmodels widyr]; }; sapa = derive2 { name="sapa"; version="2.0-3"; sha256="0kj681rd4c2lvqr926lb6f4qwp281x5274dg6vbk8pf5y7s0qlpc"; depends=[ifultools splus2R]; }; @@ -15712,6 +15717,7 @@ in with self; { scDIFtest = derive2 { name="scDIFtest"; version="0.1.1"; sha256="1hq68g7zf7372cach2qfc7l1l8gh5aqkp66k0cxjnrhmvvb1qcax"; depends=[mirt sandwich strucchange zoo]; }; scDiffCom = derive2 { name="scDiffCom"; version="0.1.0"; sha256="1xgrsfrh06n8hzyqv3j99kjk6l85khg099vjdsf7kx9f5p92iixd"; depends=[data_table DelayedArray future future_apply magrittr Seurat]; }; scINSIGHT = derive2 { name="scINSIGHT"; version="0.1.1"; sha256="1a02013l648bz1h3nhflm1j0kdy48vg3y0x4gzjnhz1ihvnjngwl"; depends=[igraph RANN Rcpp RcppArmadillo stringr]; }; + scITD = derive2 { name="scITD"; version="1.0.0"; sha256="0mar8m3qvrvn6cx8nq5dvrc3im27scz1rhpydyx043vmv5yxmldz"; depends=[circlize ComplexHeatmap dplyr edgeR fgsea ggplot2 ggpubr ica Matrix mgcv msigdbr NMF RColorBrewer Rcpp RcppArmadillo RcppProgress reshape2 Rmisc rTensor sccore sva]; }; scLink = derive2 { name="scLink"; version="1.0.1"; sha256="0gcwx8kfik1lv949r9d9rqqnvrfkr4bj5cj2i9h1r7l1b76kna74"; depends=[glasso]; }; scMappR = derive2 { name="scMappR"; version="1.0.7"; sha256="08ifrdmr4ws4z6aq75j84sain8q55ax6h1gzqqnphyw593yh9918"; depends=[ADAPTS downloader ggplot2 gProfileR gprofiler2 GSVA limSolve pbapply pcaMethods pheatmap reshape Seurat]; }; scModels = derive2 { name="scModels"; version="1.0.2"; sha256="02nn8nv77fgmskx5zsa34ij9lzq9jiv8w2vmw5863v55khzvfs53"; depends=[gamlss_dist Rcpp]; }; @@ -15746,7 +15752,7 @@ in with self; { scdensity = derive2 { name="scdensity"; version="1.0.2"; sha256="173xm3bf8vxl30zk4n451al7m003byg9q4d1l1pfyfa4xnv8qdg9"; depends=[lpSolve quadprog]; }; scdhlm = derive2 { name="scdhlm"; version="0.5.2"; sha256="147kqr65gxy44nj9rj4jbw590pbqspli4dpkgdq4hj9x1daww2ql"; depends=[lmeInfo nlme readxl]; }; scenario = derive2 { name="scenario"; version="1.0"; sha256="0v1b00kiny21yx4qkk2x51cy1zqibdnd68z76qia7h5py28yhxsi"; depends=[]; }; - scgwr = derive2 { name="scgwr"; version="0.1.2-1"; sha256="1dv6lsdpv6gdgjkww3ljqqkwdy9ir82dzwiqrclbfp9vlzay4ybf"; depends=[dplyr FNN optimParallel spData]; }; + scgwr = derive2 { name="scgwr"; version="0.1.2-2"; sha256="0qna5p9rj4mmb5lz3bax3r2cpjdggwgj0ys0g36zgj3i3rls8gvw"; depends=[dplyr FNN optimParallel sp spData]; }; schemr = derive2 { name="schemr"; version="0.1.0"; sha256="0w29la0mh5bvij52r8jgfl47cgm0xc53702ms5r4jv0pdd49qlg8"; depends=[apcluster dplyr ggplot2 magrittr OpenImageR purrr stringr]; }; schoRsch = derive2 { name="schoRsch"; version="1.9.1"; sha256="0f823z48s50jhcphqqivchrmkiwqg25nc01c17kjpzzryd2fi5zs"; depends=[]; }; schoenberg = derive2 { name="schoenberg"; version="2.0.2"; sha256="17pbw9266r9lv9blygmvq9285kcrcy07jaqrj3zfa2pg0zyvhjvm"; depends=[crayon]; }; @@ -15760,7 +15766,7 @@ in with self; { sciplot = derive2 { name="sciplot"; version="1.2-0"; sha256="097zcgjsv54f6wd8fjwh2xb406j6yrw94v9pcxa0zln1q7fs93vk"; depends=[]; }; scipub = derive2 { name="scipub"; version="1.2.2"; sha256="1k06pmpwpmgiglqhh9ca67m74vb961dczc9394xnwfszq9g3gz1n"; depends=[dplyr forcats gghalves ggplot2 purrr stringr tibble tidyr tidyselect]; }; sclr = derive2 { name="sclr"; version="0.3.1"; sha256="10pihx35889w509ijbyq5hzslk9n7kakjnfscg7p0dq198nbpyca"; depends=[broom dplyr purrr rlang tibble]; }; - scoper = derive2 { name="scoper"; version="1.1.0"; sha256="0ls1c4h7l5wk6y4yw8278rg3kyk96508pc9cd4k68kncj302xj26"; depends=[alakazam data_table doParallel dplyr foreach ggplot2 Rcpp rlang scales shazam stringi tidyr]; }; + scoper = derive2 { name="scoper"; version="1.2.0"; sha256="08zpia618dkvgksbpvhix5dgvgzbc1iakf97bh4akpxqa7i3bcv5"; depends=[alakazam data_table doParallel dplyr foreach ggplot2 Rcpp rlang scales shazam stringi tidyr]; }; scopr = derive2 { name="scopr"; version="0.3.3"; sha256="1j45l5zcrpc4dnb6ik1v0jlqizpkijl0p656s869jhhvv55r6v2i"; depends=[behavr data_table memoise readr RSQLite stringr]; }; score = derive2 { name="score"; version="1.0.2"; sha256="1p289k1vmc7qg70rv15x05dyb92r7s6315whr1ibi40sqln62a5s"; depends=[msm]; }; scorecard = derive2 { name="scorecard"; version="0.3.5"; sha256="0zsmjdcsprpnggznwiy4m21r7vryx17chz2s3q2ny74gdjpyc0z2"; depends=[data_table doParallel foreach ggplot2 gridExtra openxlsx stringi]; }; @@ -15870,10 +15876,9 @@ in with self; { semEff = derive2 { name="semEff"; version="0.6.0"; sha256="0w919y49kl2vq9psnjn03cwwp99myip5cbvm6jmkkjiikx8iikh0"; depends=[boot gsl lme4]; }; semPLS = derive2 { name="semPLS"; version="1.0-10"; sha256="0q5linjyv5npkw4grx3vq58iq2q1grf06ikivhkg8w7rvb7pqn6b"; depends=[lattice]; }; semPlot = derive2 { name="semPlot"; version="1.1.2"; sha256="0l1v9yi1pv59iwfknw4dh9qskk5y8r347jq1vq13gnfd3bmd71xr"; depends=[colorspace corpcor igraph lavaan lisrelToR OpenMx plyr qgraph regsem rockchalk sem XML]; }; - semPower = derive2 { name="semPower"; version="1.1.0"; sha256="091695q9s5hymnziz9sjbn0magxqb21m9z2yj97w1laaflc3m3z3"; depends=[]; }; + semPower = derive2 { name="semPower"; version="1.2.0"; sha256="1y3j6b3ab19fqxzqrrssjcj7f0za0vkwq97s7qs6hwj9yfsg1nas"; depends=[]; }; semTable = derive2 { name="semTable"; version="1.8"; sha256="0qr420rnz59q8arf6x05iy1zyh7pv31ldi2rsw1j2a00fbpp4ndf"; depends=[kutils lavaan plyr stationery xtable]; }; semTools = derive2 { name="semTools"; version="0.5-5"; sha256="1dpsn43ifvfy5v8w2fqdy54yclmy0d3qlzix67lflr2r7isq7y6x"; depends=[lavaan pbivnorm]; }; - semantic_dashboard = derive2 { name="semantic.dashboard"; version="0.2.0"; sha256="0i9l8s19bw5xj4dzq932j0lzldg725zwcxnnda9p8gp0fimkb3d2"; depends=[checkmate glue htmltools shiny shiny_semantic]; }; semdiag = derive2 { name="semdiag"; version="0.1.2"; sha256="0kjcflw7dn907zx6790w7hnf5db6bf549whfsc0c2r173kf13irp"; depends=[sem]; }; semdrw = derive2 { name="semdrw"; version="0.1.0"; sha256="16hm1ifgspnxnlf3rfg5ylmql2fq91ig8nc5953ggyhfrjwbqx15"; depends=[dplyr lavaan psych semPlot semTools shiny shinyAce]; }; semds = derive2 { name="semds"; version="0.9-6"; sha256="10kvcmcy6qa2r5sram6azqgzl528rghfxgw2f2bq2fvhhq127dzq"; depends=[minpack_lm pracma]; }; @@ -15943,7 +15948,7 @@ in with self; { servr = derive2 { name="servr"; version="0.23"; sha256="1f1fgfgjgjsbn2krkbyw2qwkm0k4lq9p9jakg9zwyqlgpkdd34j4"; depends=[httpuv jsonlite mime xfun]; }; sesem = derive2 { name="sesem"; version="1.0.2"; sha256="0b1xzv38wpkhhlq87xrvlh45b8ksbi8bg4ar5hrf8gxa19r9rmi5"; depends=[gplots lavaan mgcv]; }; session = derive2 { name="session"; version="1.0.3"; sha256="04mcy1ac75fd33bg70c47nxqxrmqh665m9r8b1zsz5jij1sbl8q5"; depends=[]; }; - sessioninfo = derive2 { name="sessioninfo"; version="1.2.0"; sha256="1pq7ihd1qxigbdj7r9y00vpi20r4jjcr8b9h33hgjfixmlwggsxd"; depends=[cli]; }; + sessioninfo = derive2 { name="sessioninfo"; version="1.2.1"; sha256="0w3vhp652524348a4cfyvvs8z9xpxkcznw8x406nvkwfh0gdyka2"; depends=[cli]; }; set = derive2 { name="set"; version="1.2"; sha256="0f36dp9k0nxp1amsd7ybwgbv0vxvgd1kns7cbfsbsh0kljxyplzp"; depends=[do]; }; set6 = derive2 { name="set6"; version="0.2.4"; sha256="06swz60p73a7m7rvsv1545hsr2chkk2w2hmnfwkwfz4hrbdxm709"; depends=[checkmate ooplah R6 Rcpp]; }; setRNG = derive2 { name="setRNG"; version="2013.9-1"; sha256="02198cikj769yc32v8m2qrv5c01l2fxmx61l77m5ysm0hab3j6hs"; depends=[]; }; @@ -16014,7 +16019,6 @@ in with self; { shiny_react = derive2 { name="shiny.react"; version="0.2.3"; sha256="19k1rvq47s56cipxqbalgzmhwdxw3ic5bd9qqnvsw75ynbhpa959"; depends=[glue htmltools jsonlite logger rlang shiny]; }; shiny_reglog = derive2 { name="shiny.reglog"; version="0.4.1"; sha256="1azhcz2ffrc82f9yfqfivb9m2alanl4wx1i8q8pyympqw09gg5zy"; depends=[DBI dplyr googlesheets4 lubridate R6 RSQLite scrypt shiny]; }; shiny_router = derive2 { name="shiny.router"; version="0.2.2"; sha256="1jxk1hxi42kyi5dahszhl9nzppa99svk1vhwf2d15apfrg2d6ivc"; depends=[htmltools magrittr shiny]; }; - shiny_semantic = derive2 { name="shiny.semantic"; version="0.4.2"; sha256="0ndjp8c3c8kci8rzhj4bg1zpgwzcilgbjplx0sr2hii87lpi0v2j"; depends=[glue htmltools htmlwidgets jsonlite magrittr purrr R6 shiny]; }; shiny_worker = derive2 { name="shiny.worker"; version="0.0.1"; sha256="1l30dx46s3q1x9nd42r6dracd3lqkjk80r9jyjqy8lmdsq48300i"; depends=[future R6 shiny]; }; shinyAce = derive2 { name="shinyAce"; version="0.4.1"; sha256="1m33dfm2kjirvgix7ybv1kbzgjkicdpv411g9c0q3fw6rnyhfxxn"; depends=[jsonlite shiny]; }; shinyBS = derive2 { name="shinyBS"; version="0.61"; sha256="0rhim4mbp4x9vvm7xkmpl7mhb9qd1gr96cr4dv330v863ra2kgji"; depends=[htmltools shiny]; }; @@ -16025,7 +16029,7 @@ in with self; { shinyEffects = derive2 { name="shinyEffects"; version="0.2.0"; sha256="1ajar09hmrk7vcw89wkgvkz2yl0cfnkz915b57w1lmbvpxzgsq3i"; depends=[htmltools shiny]; }; shinyFeedback = derive2 { name="shinyFeedback"; version="0.4.0"; sha256="1xfznq2d4wkk0b0y4k25rwg4d3bhn3gxlkf3chfqk44f4rgril11"; depends=[fontawesome htmltools jsonlite shiny]; }; shinyFiles = derive2 { name="shinyFiles"; version="0.9.0"; sha256="0rsijlx16vd74r7bd8s9zipy71kgpw19v9s85kxj5bmwc6njmbai"; depends=[fs htmltools jsonlite shiny tibble]; }; - shinyGovstyle = derive2 { name="shinyGovstyle"; version="0.0.6"; sha256="0q3yjkb7gnf15l2bh5wp1y1z6rn6apxd731wr8b82qbsdm68q5sm"; depends=[htmltools jsonlite shiny shinyjs]; }; + shinyGovstyle = derive2 { name="shinyGovstyle"; version="0.0.7"; sha256="08lslxzmlzyrphaf0i3pqj21q2iqqskmlr7dnhm4yrfvm6jllglz"; depends=[htmltools jsonlite shiny shinyjs]; }; shinyHeatmaply = derive2 { name="shinyHeatmaply"; version="0.2.0"; sha256="1n7c7dvvb9kqay2phcf0bkwi990x1cjl7js6pq05xx7rli5bc5h4"; depends=[dplyr heatmaply htmltools plotly readxl rmarkdown shiny xtable]; }; shinyIRT = derive2 { name="shinyIRT"; version="0.1"; sha256="01x7nhjs1dx2ldwznhbavc5vzqhgkn73xg395vlf2hgzbxa2ydvj"; depends=[irtoys magrittr mirt psych readxl shiny shinycssloaders shinydashboard]; }; shinyKGode = derive2 { name="shinyKGode"; version="1.0.5"; sha256="004zwz4kqfijzvvwkq8v1gi25w1wrdlg8230g93w36gbi6cl2vk1"; depends=[ggplot2 gridExtra KGode mvtnorm pracma pspline reshape2 shiny shinyjs XML]; }; @@ -16053,7 +16057,7 @@ in with self; { shinyanimate = derive2 { name="shinyanimate"; version="0.3.0"; sha256="0vshid5mfq006cprjj61d0g7ajyc3plc66x55c5jjmijwbp6pw7a"; depends=[shiny]; }; shinyauthr = derive2 { name="shinyauthr"; version="1.0.0"; sha256="0apaqjkxpr96kx9indl0pifk5y75gdx5npfcvxfg5k2crpx9vmxk"; depends=[dplyr glue rlang shiny shinyjs sodium]; }; shinybootstrap2 = derive2 { name="shinybootstrap2"; version="0.2.1"; sha256="17634l3swlvgj1sv56nvrpgd6rqv7y7qjq0gygljbrgpwmfj198c"; depends=[htmltools jsonlite shiny]; }; - shinybrms = derive2 { name="shinybrms"; version="1.5.2"; sha256="021ihnbmi0wqrpqy4rzbbrgvnpzf6nk1fjp63jx1hx7qi9w3ddha"; depends=[brms rstan shiny]; }; + shinybrms = derive2 { name="shinybrms"; version="1.6.0"; sha256="0dbj0sl65sgg293knrarj7rc5fc8xvhdh601b2srs0zqp6vjzhbn"; depends=[brms rlang rstan shiny]; }; shinybusy = derive2 { name="shinybusy"; version="0.2.2"; sha256="06vfkv382xcpjh30i7d4ym4vyravadp5vjsvrnw4npy0302pdmzl"; depends=[htmltools htmlwidgets jsonlite shiny]; }; shinycssloaders = derive2 { name="shinycssloaders"; version="1.0.0"; sha256="0r3xm273lhdhzbs2mkgw1m2kwb7z1dh1pzya8yxy5vacda1l2ikl"; depends=[digest glue shiny]; }; shinycustomloader = derive2 { name="shinycustomloader"; version="0.9.0"; sha256="1klx71vr26g0gjf6hbiia1qidqii5d467i1sdjvlrg1hxdcggqff"; depends=[glue shiny]; }; @@ -16165,7 +16169,7 @@ in with self; { simglm = derive2 { name="simglm"; version="0.8.8"; sha256="18k3wd9j4hyph9db4h8r7cc93g8f3jkshraj3jn6mpg6k911w78n"; depends=[broom dplyr future_apply Matrix purrr rlang]; }; simgof = derive2 { name="simgof"; version="1.0.2"; sha256="05d7im59i193f266kqy4lr37dw3v20j9niizhj9w8z1qlfqfqsrk"; depends=[ddst]; }; simhelpers = derive2 { name="simhelpers"; version="0.1.1"; sha256="0hnqvymmyimh6244r8a8qmmsb799pgj6j6yvgdnhvjmss8ymif9d"; depends=[dplyr furrr future magrittr purrr Rdpack rlang rstudioapi tibble tidyr]; }; - simlandr = derive2 { name="simlandr"; version="0.1.1"; sha256="0d3ck7q5wqnnkipw69yn3n8m9005b7xic26yiif9b10r73y6pykg"; depends=[bigmemory digest dplyr forcats gganimate ggplot2 htmlwidgets ks magrittr MASS plotly purrr rlang scales tibble]; }; + simlandr = derive2 { name="simlandr"; version="0.1.2"; sha256="1f1r22a7w8xqkgavnb6g06if29vf1905d3h32ww9zzxz65g3a9qa"; depends=[bigmemory digest dplyr forcats gganimate ggplot2 htmlwidgets ks magrittr MASS plotly purrr rlang scales tibble]; }; simmer = derive2 { name="simmer"; version="4.4.3"; sha256="0vp1dc9kpinl4hkyrig5msssl35wxd9w9jyk7lbknxavjp1aqc69"; depends=[BH codetools magrittr Rcpp]; }; simmer_bricks = derive2 { name="simmer.bricks"; version="0.2.1"; sha256="1s73mfmpjz91n932kjk50aai5j3p1sjibq73yxrjdhlyhiy4d8lp"; depends=[simmer]; }; simmer_plot = derive2 { name="simmer.plot"; version="0.1.16"; sha256="15snsxbljapk1br3psd6ypwa34a6x57zrblgpjyihpaivpxcz7m6"; depends=[DiagrammeR dplyr ggplot2 scales simmer tidyr]; }; @@ -16173,6 +16177,7 @@ in with self; { simmr = derive2 { name="simmr"; version="0.4.5"; sha256="0kv3ip0yq3r2a9dglx0pkjvg5bkf9fg2x051dp6z0ld1c0f4p6ms"; depends=[bayesplot boot checkmate compositions ggplot2 MASS R2jags reshape2 viridis]; }; simode = derive2 { name="simode"; version="1.2.0"; sha256="0wlnd01xfdqvjfvmkhkj6nvkrnv5ghjv4md5nhaqsjc8bycawyl0"; depends=[deSolve pracma quadprog]; }; simpleCache = derive2 { name="simpleCache"; version="0.4.2"; sha256="0zayq4n8cc0xgszckjvvf55ygy8hwywv161pp8pqi2k4z91rq4lz"; depends=[]; }; + simpleFDR = derive2 { name="simpleFDR"; version="1.1"; sha256="09w7l8pb6kibzifwyqcgshlxjq2gn6s642i78939q00q0m9qvdbk"; depends=[dplyr tidyr]; }; simpleMH = derive2 { name="simpleMH"; version="0.1.0"; sha256="02arll0w39b4cz7gslka26lvjg90xy83kqiyvm4gxnsbw7s9hkyr"; depends=[mvtnorm]; }; simpleMLP = derive2 { name="simpleMLP"; version="1.0.0"; sha256="134h217d3ipzpxgj5fh04pkajqmxdnnlr53ykk27vi86dqk4087p"; depends=[ggplot2 readr]; }; simpleNeural = derive2 { name="simpleNeural"; version="0.1.3"; sha256="01q04807qws870x1qhvlr3bp0dawy8q4bh00psakhln9j9dl1ljm"; depends=[]; }; @@ -16196,7 +16201,7 @@ in with self; { simsem = derive2 { name="simsem"; version="0.5-16"; sha256="0scjb308pb8ivy5blbk1wj9d1yxcqknhvh95a3728crfq2xcqnh0"; depends=[lavaan]; }; simsl = derive2 { name="simsl"; version="0.2.1"; sha256="12dc9lcy11g1yynycvcqm62npq0v13bg6fnykb5m9ijwga4x51il"; depends=[mgcv]; }; simstandard = derive2 { name="simstandard"; version="0.6.3"; sha256="1l1vny3csrr7krfpn25rzysmwjfv6mclf51y3mq02cimcwq9fzcy"; depends=[lavaan magrittr mvtnorm purrr rlang tibble]; }; - simstudy = derive2 { name="simstudy"; version="0.2.1"; sha256="0cczfby7l8s0kmb7jzn2bl67i55nwgc4h3vixg9gsfgds32pisfc"; depends=[backports data_table glue mvnfast mvtnorm Rcpp]; }; + simstudy = derive2 { name="simstudy"; version="0.3.0"; sha256="1dvfdrgyjnqij5hgr4ffw926m5anys03k6zv7h5jx5hpx5lfx5gv"; depends=[backports data_table glue mvnfast mvtnorm Rcpp]; }; simsurv = derive2 { name="simsurv"; version="1.0.0"; sha256="16b2a3br107hy2fc0vann9wf5h9kb5j76baa37g1sfc0h19kg6kr"; depends=[]; }; simtimer = derive2 { name="simtimer"; version="4.0.0"; sha256="1c5017xmh4767d75k4rs1pssyn7p5w41bcsjjmwk4c9g6w1jgx1w"; depends=[]; }; simtrait = derive2 { name="simtrait"; version="1.0.21"; sha256="0l5x33ik4s8wlh9002dslygprh1q4j3nfr3s4yw8hpq12k5pvg8z"; depends=[PRROC]; }; @@ -16223,8 +16228,6 @@ in with self; { siteymlgen = derive2 { name="siteymlgen"; version="1.0.0"; sha256="1176fnf39ars5cdjvy5w2k6b92qv51hy86s71sl8ghr0lwdq9f59"; depends=[data_table dplyr lubridate magrittr purrr rlist rmarkdown stringr yaml ymlthis]; }; sitmo = derive2 { name="sitmo"; version="2.0.2"; sha256="1hm89zi38ldgbskyx1cn7gm87yqy7zrxli8q05a36y1ndvazi3j4"; depends=[Rcpp]; }; sitools = derive2 { name="sitools"; version="1.4"; sha256="0c0qnvsv06g6v7hxad96fkp9j641v8472mbphvaxa60k3xc7ackb"; depends=[]; }; - sitree = derive2 { name="sitree"; version="0.1-10"; sha256="1sspbzzr0xdzgx2n4yvj1vih952wz17qzk4vkjwpifbl8xkafw6v"; depends=[data_table ggplot2]; }; - sitreeE = derive2 { name="sitreeE"; version="0.0-7"; sha256="07x7p0rqkmjlf6lykx9ckh9dbwjqjkmszrhar1vmpy54i8gv3ha7"; depends=[data_table sitree]; }; sivs = derive2 { name="sivs"; version="0.2.5"; sha256="16w1yixb2wfgprnfm408l11nz9j28by7sz82x17rzmjb6p3n1jw5"; depends=[doParallel foreach glmnet pROC varhandle]; }; sizeMat = derive2 { name="sizeMat"; version="1.1.2"; sha256="1vbndadsn80ddrg471vp1qxf0gan38w6dkjk1p2npvfb47wdjj2h"; depends=[MASS matrixStats MCMCpack]; }; sjPlot = derive2 { name="sjPlot"; version="2.8.9"; sha256="07b9p5wbb6xmyapg9j6i4cdcj7j9wj9gi30gljj6j2lj1flgdd7q"; depends=[bayestestR datawizard dplyr effectsize ggeffects ggplot2 insight knitr MASS parameters performance purrr rlang scales sjlabelled sjmisc sjstats tidyr]; }; @@ -16243,7 +16246,7 @@ in with self; { skewt = derive2 { name="skewt"; version="0.1"; sha256="1xm00zfzjv53cq9drfcx7w2ri5dwsq7kajrk2hc1mvw0b6s4x2ix"; depends=[]; }; skilljaR = derive2 { name="skilljaR"; version="0.0.1"; sha256="1qfb4irslbmidjq358bkhadr71armk4jps78xz5bm0kxbj2nljhq"; depends=[dplyr httr jsonlite magrittr purrr]; }; skimr = derive2 { name="skimr"; version="2.1.3"; sha256="02q5l1l1a9m602dg55gbb1zd3ymh0gxy6r815dj8cp769i8hqla1"; depends=[cli crayon dplyr knitr magrittr purrr repr rlang stringr tibble tidyr tidyselect vctrs withr]; }; - sklarsomega = derive2 { name="sklarsomega"; version="2.0-1"; sha256="0pk3dk0bsbby4wnj8sad8yllix48hq3ayv3709kglc97d8bhjzha"; depends=[extraDistr hash LaplacesDemon Matrix mcmcse numDeriv spam]; }; + sklarsomega = derive2 { name="sklarsomega"; version="3.0"; sha256="1dzf9g553k9cmf5w3h1hl5msfkmpd7iddz3x45vg5bjm38fa9cp2"; depends=[dfoptim extraDistr hash LaplacesDemon Matrix mcmcse numDeriv spam]; }; skm = derive2 { name="skm"; version="0.1.5.4"; sha256="06g3bdncq2r56d8k3dr87gqnibypbsps0gj4jxkw9q1sq1yaff3v"; depends=[data_table magrittr plyr Rcpp RcppArmadillo RcppParallel]; }; skmeans = derive2 { name="skmeans"; version="0.2-13"; sha256="1nks9k910fc0m07wpi9ridpyvgnnjlgw821mnvpv8skr4i75zy1w"; depends=[clue cluster slam]; }; sknifedatar = derive2 { name="sknifedatar"; version="0.1.2"; sha256="0zi9anrxg9zkgxlzlfyry5i5zlj3fs8580mp6xckkl096dry9ih0"; depends=[cli dplyr knitr magrittr modeltime parsnip purrr rlang rsample tibble tidyr tune]; }; @@ -16405,7 +16408,6 @@ in with self; { sovereign = derive2 { name="sovereign"; version="1.2.0"; sha256="06maaw366k0pfdmj09rj7l4chv6mynhs67mmr98gfwqhsabhqfxh"; depends=[broom dplyr furrr future ggplot2 gridExtra lmtest lubridate magrittr mclust purrr randomForest sandwich stringr strucchange tidyr xts zoo]; }; sp = derive2 { name="sp"; version="1.4-5"; sha256="1nh9izsnszzm5kbq461w8bi0yh7fqzb74b2zmpg5qis0slbb5vkb"; depends=[lattice]; }; sp23design = derive2 { name="sp23design"; version="0.9"; sha256="1ihvcld19cxflq2h93m9k9yaidhwixvbn46fqqc1p3wxzplmh8bs"; depends=[mvtnorm survival]; }; - spANOVA = derive2 { name="spANOVA"; version="0.99.3"; sha256="0w817zwbk6amh3n3j8wzjr15qqhfbk9s23c77b27iwcc5akdgbix"; depends=[ape car DT geoR gtools knitr MASS Matrix multcomp multcompView mvtnorm rmarkdown ScottKnott shiny shinyBS shinycssloaders shinythemes spatialreg spdep xtable]; }; spAddins = derive2 { name="spAddins"; version="0.2.0"; sha256="19wbcghcf0f9qvqy92jhsdcpmd9b4lkhxndvr71cyhzga539lh1n"; depends=[magrittr purrr rstudioapi stringr]; }; spBFA = derive2 { name="spBFA"; version="1.1"; sha256="1jx1w9ipf8q08vx1w80s4h7nvgl2xqwcj7afci3j78psc6bigazi"; depends=[msm mvtnorm pgdraw Rcpp RcppArmadillo]; }; spBayes = derive2 { name="spBayes"; version="0.4-5"; sha256="1qjh7y241v9z5al9nwdsbdqr15cj1prsrppwvbv4m5h285npvnji"; depends=[coda Formula magic Matrix sp]; }; @@ -16485,7 +16487,6 @@ in with self; { sparta = derive2 { name="sparta"; version="0.8.1.1"; sha256="19gqfrzqnks6vx8d4jif3finc39whaxq3zid7hzd3cv28wv8wbz7"; depends=[Rcpp RcppArmadillo]; }; spass = derive2 { name="spass"; version="1.3"; sha256="1c148z0i3d185hnf54xmgppjrblv3b2s3sm0lmj78gvav04mj5s4"; depends=[geepack MASS multcomp mvtnorm Rcpp]; }; spatPomp = derive2 { name="spatPomp"; version="0.28.0.0"; sha256="0yql6llgclynd2nv1y4sm1a6lsc87003bqbq9skh3lgvdgbg5qsr"; depends=[abind dplyr foreach ggplot2 magrittr pomp rlang stringr tidyr]; }; - spate = derive2 { name="spate"; version="1.7"; sha256="1cr5jjrycfj9larsqgzfakk4qgfz8m5djg4ddzk6s3lg2iw06y43"; depends=[mvtnorm truncnorm]; }; spatgraphs = derive2 { name="spatgraphs"; version="3.2-2"; sha256="09bbcqgmbg6a65mnxivr4pghsanj22x1j0l4hq8bzpwgbas7byhy"; depends=[Matrix Rcpp]; }; spathial = derive2 { name="spathial"; version="0.1.2"; sha256="1vwzcwpmx8kwv821vjf940qd5am3k0shf1s14jva71mgxs70ddmb"; depends=[class igraph irlba knitr MASS matrixStats pracma rmarkdown Rtsne]; }; spatial = derive2 { name="spatial"; version="7.3-14"; sha256="0dlafq744mahxpb13llmsrg54fzww8ld1nbxmr7m851gff11kk2j"; depends=[]; }; @@ -16504,7 +16505,7 @@ in with self; { spatsoc = derive2 { name="spatsoc"; version="0.1.16"; sha256="1pyw6606kwskgcfnzvgzvy8n4i9s3mmn1789d1lhk04h14r33fns"; depends=[adehabitatHR data_table igraph rgeos sp]; }; spatstat = derive2 { name="spatstat"; version="2.2-0"; sha256="0lz3sidn05xjswxaxhagal6jj5hra6aya0azxybjw7mgspl903wg"; depends=[spatstat_core spatstat_data spatstat_geom spatstat_linnet spatstat_utils]; }; spatstat_Knet = derive2 { name="spatstat.Knet"; version="2.0-0"; sha256="1w9ag7v18mvy4dl1gz2w8xjhw9n2sf9zycqz3mraajis831c76ix"; depends=[Matrix spatstat_core spatstat_data spatstat_geom spatstat_linnet spatstat_sparse spatstat_utils]; }; - spatstat_core = derive2 { name="spatstat.core"; version="2.3-0"; sha256="1j962lzllqzxkd57j6immyj94pc53ff9mlvw1iscw7cnn9nyr5ap"; depends=[abind goftest Matrix mgcv nlme rpart spatstat_data spatstat_geom spatstat_sparse spatstat_utils tensor]; }; + spatstat_core = derive2 { name="spatstat.core"; version="2.3-1"; sha256="1fq6ynds66d836drf758syqhfz0341fxif0r5hbf5lfkwp3a2wfk"; depends=[abind goftest Matrix mgcv nlme rpart spatstat_data spatstat_geom spatstat_sparse spatstat_utils tensor]; }; spatstat_data = derive2 { name="spatstat.data"; version="2.1-0"; sha256="0csmz5vjaxnznkbsfah8qd3v8p0y56jvis01ialxzvf71snl160v"; depends=[Matrix spatstat_utils]; }; spatstat_geom = derive2 { name="spatstat.geom"; version="2.3-0"; sha256="1iz9zi45nli5lf96ng6bqqbl4ix3zxzlfclkg4cdb9h98nj4c5vv"; depends=[deldir polyclip spatstat_data spatstat_utils]; }; spatstat_gui = derive2 { name="spatstat.gui"; version="2.0-0"; sha256="0v26pmi6ir38hsfhkmkz7njf8b12y8dgacqz54vy9giq73k71j14"; depends=[rpanel spatstat_core spatstat_data spatstat_geom spatstat_linnet spatstat_utils]; }; @@ -16546,7 +16547,7 @@ in with self; { sped = derive2 { name="sped"; version="0.2-1"; sha256="05igpk8szdcs6kjhpmd9dmjvqdg199pz3hi0rwkhdjglxivvjzjn"; depends=[pooh]; }; speech = derive2 { name="speech"; version="0.1.4"; sha256="17j4hwfqsazakkdxdrx87dfpmdsh51mms31sm3hpnzh4j7ijcg86"; depends=[dplyr lubridate magrittr pdftools purrr rvest stringr tibble tidyr tm]; }; speedglm = derive2 { name="speedglm"; version="0.3-3"; sha256="0f37w4lj8dpcg1sfkd7cv6qpdkanmb97mnd8zih2fxzv8bpd0rfh"; depends=[MASS Matrix]; }; - speedycode = derive2 { name="speedycode"; version="0.1.0"; sha256="1bmhc7x8smjs3d880ah9h6phb3igrd95b31wyg3pgzdb6lh8xa13"; depends=[dplyr purrr stringr]; }; + speedycode = derive2 { name="speedycode"; version="0.2.0"; sha256="1fz8a6z77r17rld1qqiq3hsk65fpjz8f6czcfqsc8y2fxm0jy602"; depends=[dplyr purrr stringr]; }; spef = derive2 { name="spef"; version="1.0.9"; sha256="115lmv2a21ws1mj22v1fbk72mqn3siqmw3frbg4nci96lnyr7qh6"; depends=[BB ggplot2 nleqslv plyr sm SQUAREM survival]; }; speff2trial = derive2 { name="speff2trial"; version="1.0.4"; sha256="0dj5mh2sdp6j4ijgv14hjr39rasab8g83lx1d9y50av11yhbf2pw"; depends=[leaps survival]; }; spellcheckr = derive2 { name="spellcheckr"; version="0.1.2"; sha256="09snc1ymzr4njnr3w502b84dqwjjd414higjxqi48jvh27br5k1l"; depends=[data_table dplyr stringr]; }; @@ -16616,7 +16617,7 @@ in with self; { sportyR = derive2 { name="sportyR"; version="1.0.1"; sha256="03l5zyqdrzji58acq5mmczz7nx9yk29hf5dzagpgb8fraq1vvddi"; depends=[dplyr ggplot2 glue]; }; spotGUI = derive2 { name="spotGUI"; version="0.2.3"; sha256="0hybpw0lgqrzrryfp08qvl42hrgdmx2hq7bavxjihm8mp0375dmz"; depends=[batchtools gridExtra httpuv plotly rclipboard rhandsontable shiny shinyBS shinydashboard shinyFiles shinyjs smoof SPOT XML]; }; spotidy = derive2 { name="spotidy"; version="0.1.0"; sha256="0hg8d3piiwp4q3257qsv5l41zc3c5a8mbq595ci63id8fc2q2pkd"; depends=[dplyr httr magrittr purrr]; }; - spotifyr = derive2 { name="spotifyr"; version="2.2.1"; sha256="0yj00sn73jl741c6ma68cxm1i6gv5s9xnj0k07c90mhhb6sxfq9y"; depends=[assertthat dplyr genius ggridges httr janitor jsonlite lubridate magrittr purrr readr rlang rvest stringr tibble tidyr xml2]; }; + spotifyr = derive2 { name="spotifyr"; version="2.2.3"; sha256="1gpi7d40rdx4dvx5699xj5zisz48arwni18sszvp8phvhgqbj0lh"; depends=[assertthat dplyr genius ggridges httr janitor jsonlite lubridate magrittr purrr readr rlang rvest stringr tibble tidyr xml2]; }; spotoroo = derive2 { name="spotoroo"; version="0.1.1"; sha256="0xh7fxkry63fm83vfc2njjzp4r6gb5b2242ima8q75mrvjc5biax"; depends=[cli dplyr geodist ggbeeswarm ggExtra ggplot2 ggrepel patchwork progress]; }; spp = derive2 { name="spp"; version="1.16.0"; sha256="08zxxgyp0h6733b08jmml7k4rhfd3mi5dda3jrzid0s184y0z29w"; depends=[BH caTools Rcpp Rsamtools]; }; spray = derive2 { name="spray"; version="1.0-11"; sha256="0zg7rhsxbbrbvjv4azkyl9fd5kgh0a5xnkr9lnaqiss8z109jl6v"; depends=[magic mathjaxr partitions Rcpp]; }; @@ -16667,6 +16668,7 @@ in with self; { ssc = derive2 { name="ssc"; version="2.1-0"; sha256="1lq71p8hbjfg4a52009810k5dmhak9ddk1dywvhy7v2gjmxqnadw"; depends=[proxy]; }; sscor = derive2 { name="sscor"; version="0.2"; sha256="1kcrr90cxg6k4qkc3pidhkwf4dsnlgbxczxigr2afwpd9cpf104c"; depends=[mvtnorm pcaPP robustbase]; }; ssd = derive2 { name="ssd"; version="0.3"; sha256="1z61n9m6vn0ijawyz924ak0zfl9z13jsb4k4575b7c424ci2p6gy"; depends=[]; }; + ssddata = derive2 { name="ssddata"; version="1.0.0"; sha256="0njcnjcgdghwrbjcbiq4yfn7nq9h4dvylrqh57c6vx35yqc4g375"; depends=[chk dplyr Rdpack]; }; ssdtools = derive2 { name="ssdtools"; version="0.3.7"; sha256="1mxkbf7skxg073nmy195c78fh8mimxnycnlx921y3pb9vrplsn2a"; depends=[abind actuar chk fitdistrplus ggplot2 lifecycle Rcpp scales tibble VGAM]; }; sse = derive2 { name="sse"; version="0.7-17"; sha256="0aqpi70rgmh2kmf11z2cvyl8c9klv8jm81pcpkzjrw3pbpgkqizf"; depends=[lattice]; }; ssev = derive2 { name="ssev"; version="0.1.0"; sha256="1iw07gw9vhg073s5kkxh5f1si6p998rc1i2zglnpk5c3pi3l55wp"; depends=[MESS pwr]; }; @@ -16730,8 +16732,8 @@ in with self; { starter = derive2 { name="starter"; version="0.1.6"; sha256="1f7vmbiynaflbjd1pr8g1zmgxlkgyi1hb33xbah503qrz5iclfpf"; depends=[dplyr fs gert glue here purrr R_utils readr renv rlang stringr tibble usethis]; }; startup = derive2 { name="startup"; version="0.15.0"; sha256="05a5drjzmc969yn5y62gy1ja469nqrcbicycvjmlgrrfcj7918mi"; depends=[]; }; startupmsg = derive2 { name="startupmsg"; version="0.9.6"; sha256="0vkqxir4ady4dn9s70dfg1fxck2xg8vnmrmxjzvk01i6pc9zyq0x"; depends=[]; }; - starvars = derive2 { name="starvars"; version="1.1.8"; sha256="0l081xw1ad7b4qgdr6wywhqvq4icrpcid5khwck58i1v95qsq3is"; depends=[doSNOW foreach ks lessR MASS matrixcalc optimParallel quantmod vars xts zoo]; }; - starvz = derive2 { name="starvz"; version="0.6.0"; sha256="0qmgijlj00rqkf47m06zf8p6gm94fylm7wamrip1zmf23mr7fhvk"; depends=[arrow BH car data_tree dplyr flexmix ggplot2 gtools lpSolve magrittr patchwork purrr RColorBrewer Rcpp readr rlang stringr tibble tidyr yaml zoo]; }; + starvars = derive2 { name="starvars"; version="1.1.9"; sha256="0h4swxkvcif79258jimrzy4lk370ad6f0w9npjhya6pbjii40j3l"; depends=[doSNOW foreach ks lessR MASS matrixcalc optimParallel quantmod vars xts zoo]; }; + starvz = derive2 { name="starvz"; version="0.7.0"; sha256="166mppribk0hsx4rs3km0k44s7yww6ss5bmxn4434caj43rda5lr"; depends=[arrow BH data_tree dplyr ggplot2 gtools lpSolve magrittr patchwork purrr RColorBrewer Rcpp readr rlang stringr tibble tidyr yaml zoo]; }; starwarsdb = derive2 { name="starwarsdb"; version="0.1.2"; sha256="00n9qqw4lbfk698qgvw8i42sy3dv5i5fiiqma3zks4rr9yspkldq"; depends=[DBI duckdb magrittr tibble]; }; stat_extend = derive2 { name="stat.extend"; version="0.1.4"; sha256="1m3bjwgb0g0c445xy9b29yibnf8ldjfnyd0i519dxnh31b6k8vy9"; depends=[sets]; }; statGraph = derive2 { name="statGraph"; version="0.5.0"; sha256="0fd7jsngd8gihivnir3y58961kvbdd5g1m5gm1da91984qs7r9q1"; depends=[cluster doParallel foreach igraph MASS rARPACK]; }; @@ -16816,6 +16818,7 @@ in with self; { storr = derive2 { name="storr"; version="1.2.5"; sha256="0qszdq16bf0dbss33zi63ciwmkgjsyc0c3akrr2kl14w3ncw6922"; depends=[digest R6]; }; storywranglr = derive2 { name="storywranglr"; version="0.2.0"; sha256="07w3dwv2naqbbdzjcv58cisj7cv1rbhrk96a30q8ww11rf953rj4"; depends=[dplyr httr jsonlite tibble urltools]; }; stosim = derive2 { name="stosim"; version="0.0.14"; sha256="10k8j7manskjsrjc1l44yhy682b1qh0k2jx3cs5k69j2z42mnhmk"; depends=[Rcpp]; }; + stplanr = derive2 { name="stplanr"; version="0.8.5"; sha256="13m6giaz43qgq9gwk3mywzjkhwbmwxsw2sbbl46kvzmxn2pbdmml"; depends=[curl data_table dplyr geosphere httr igraph jsonlite lwgeom magrittr maptools nabor pbapply raster Rcpp RcppArmadillo rgeos rlang sf sfheaders sp stringr]; }; stpm = derive2 { name="stpm"; version="1.7.10"; sha256="0y9rpqjn33gdqjvag4kb6dr00w80paspgj9ic25brclfv1zmzbhf"; depends=[MASS nloptr Rcpp RcppArmadillo sas7bdat survival]; }; stpp = derive2 { name="stpp"; version="2.0-5"; sha256="1p7dxzfhi5pvva956nyypl7dfdgq3m0cara73hai87qzc342xcf0"; depends=[ggplot2 gridExtra KernSmooth plot3D rgl rpanel spatstat_core spatstat_geom splancs]; }; str2str = derive2 { name="str2str"; version="0.2.1"; sha256="180m261hr0qr3mnm8hbvjbw3q44cr1kfrnq97fvkpypigdycd9z4"; depends=[abind checkmate plyr reshape]; }; @@ -16942,7 +16945,6 @@ in with self; { survRM2 = derive2 { name="survRM2"; version="1.0-3"; sha256="1x526ax39xx4zbhr6bdzphj4sljnl070vm0qh1479r1gj0vmmhif"; depends=[survival]; }; survRM2adapt = derive2 { name="survRM2adapt"; version="1.0-1"; sha256="1r3jvjbc2sb7b00s95b3sdx4d99rmrnd573fx1n4914ydiggi9nn"; depends=[survival]; }; survRM2perm = derive2 { name="survRM2perm"; version="0.1.0"; sha256="0js9sgslxzzs8k94k9kdmbmwp1ckk9mlr8sndk17dg24raks4zmz"; depends=[survival]; }; - survRatio = derive2 { name="survRatio"; version="0.1"; sha256="1xrqin3q3b7r8ga4i71ci97rsm4lj5ffd0720n7s563jkpnpyb9l"; depends=[ggplot2 ggpubr gridExtra survival]; }; survSNP = derive2 { name="survSNP"; version="0.25"; sha256="0awj4vh7sdal873bkp7f0ff4r87idgdn5cby405flvivlxv83i9z"; depends=[foreach lattice Rcpp survival xtable]; }; survSens = derive2 { name="survSens"; version="0.1.0"; sha256="1s4s5l31yps93s2zdxpidkdg8kmmwj6vb3zfndmnxvc07arwhvbv"; depends=[directlabels ggplot2 survival]; }; survSpearman = derive2 { name="survSpearman"; version="1.0.0"; sha256="06xric3fwv2rdrbapsawrg288s2sflzrbx1a4yc7lzxzxbsbs619"; depends=[]; }; @@ -17018,6 +17020,7 @@ in with self; { swirlify = derive2 { name="swirlify"; version="0.5.3"; sha256="1bpg6yz2adgspjlwsf2q83j1bq0iyvp9938smgc41861nsclngwr"; depends=[base64enc readr rmarkdown shiny shinyAce stringr swirl whisker yaml]; }; swissMrP = derive2 { name="swissMrP"; version="0.62"; sha256="1vy6h6c4v49zlsli77ilj4df8cfh67rqmki71v6j1aqw6kf3b649"; depends=[arm blme lme4 maptools sp]; }; swissdd = derive2 { name="swissdd"; version="1.1.4"; sha256="0ad260b4sfism5q1jxjazg6q33283ncld1m7gfdrps3xg1kyfirs"; depends=[dplyr ggplot2 httr jsonlite lubridate purrr RCurl sf stringr tibble tidyr]; }; + swissparl = derive2 { name="swissparl"; version="0.2.2"; sha256="0rj01qcg0vh3vwrbag42w7mvb9ld800hzn4lszmbiv13yifgi8ys"; depends=[crayon dplyr ggplot2 httr jsonlite magrittr purrr stringr tibble tidyr]; }; switchboard = derive2 { name="switchboard"; version="0.1"; sha256="1qh6cfm5h0j17ldljpgj400f2dhcfaa4x1157d46cyfawfdscvc5"; depends=[magrittr]; }; switchcase = derive2 { name="switchcase"; version="0.1.1"; sha256="0h31nzyf7dzalgl65cw0k1fxylbmx78l45r5id2wcqdym23dv9a9"; depends=[]; }; switchnpreg = derive2 { name="switchnpreg"; version="0.8-0"; sha256="1vaanz01vd62ds2g2xv4kjlnvp13h59n8yqikwx07293ixd4qhpw"; depends=[expm fda HiddenMarkov MASS]; }; @@ -17134,6 +17137,7 @@ in with self; { tbrf = derive2 { name="tbrf"; version="0.1.5"; sha256="1mxfvgb18a62igdh3af4m8x6fl69s25j4x7isd70w744w6jvch3h"; depends=[boot dplyr lubridate purrr rlang tibble tidyr]; }; tcensReg = derive2 { name="tcensReg"; version="0.1.7"; sha256="07wwn65c4q2ngafxhdd9vl0y1wambfy158mf38skxm295yidd05n"; depends=[maxLik Rdpack]; }; tcftt = derive2 { name="tcftt"; version="0.1.0"; sha256="0p5ln0sl0fasdn49252g4lvwgwajgl7lh33a4r073ib54hxbj7bk"; depends=[]; }; + tci = derive2 { name="tci"; version="0.1.2"; sha256="0j7bqmnh0x6070ywnb2fbmhmf4iwmfa8hjw9rbw1hybnp8il090s"; depends=[ggplot2 gridExtra mvtnorm Rcpp RcppArmadillo reshape truncnorm]; }; tcl = derive2 { name="tcl"; version="0.1.1"; sha256="01klrzvw7vc0iwqpmcikgqm8jx3g7536r5f8gb6vwcik912maxnl"; depends=[colorspace eRm lattice ltm MASS Matrix numDeriv psych psychotools]; }; tcltk2 = derive2 { name="tcltk2"; version="1.2-11"; sha256="1ibxld379600xx7kiqq3fck083s8psry12859980218rnzikl65d"; depends=[]; }; tclust = derive2 { name="tclust"; version="1.4-2"; sha256="1nb5iky4kc832627jf28lzj19wrvgwg5da6fyl3kyf0npmyx1p4m"; depends=[]; }; @@ -17201,7 +17205,6 @@ in with self; { text = derive2 { name="text"; version="0.9.10"; sha256="1ramsv2pbg57yyxp5qjkls82gl5icda6f5116hr0w5s0w3jpajmj"; depends=[cowplot dplyr furrr future ggplot2 ggrepel magrittr parsnip purrr recipes reticulate rlang rsample stringr tibble tidyr tokenizers tune workflows yardstick]; }; text_alignment = derive2 { name="text.alignment"; version="0.1.2"; sha256="0qjnzdm7savn2jqmm23cd3rszyihnhb5rfnygc36ccfd15vav79j"; depends=[Rcpp]; }; text2map = derive2 { name="text2map"; version="0.1.1"; sha256="1kwbb9bp3ikksh24i69gclmanyqri3xn7rdbf1x93lhj7fxzbxrs"; depends=[doParallel dplyr fastmatch foreach igraph kit magrittr Matrix mlpack qgraph rlang stringi stringr text2vec tibble]; }; - text2sdg = derive2 { name="text2sdg"; version="0.1.0"; sha256="1a4ms4bha7h8mrbjzv5rb3s4gc1s5s22x5c97ss82r9pdb2ynvck"; depends=[corpustools dplyr ggplot2 magrittr stringr tibble tidyr]; }; text2speech = derive2 { name="text2speech"; version="0.2.13"; sha256="0c0h4yfp1gzaf4snav84iy5m0fx8az0pw1h2s33239dxkwcff893"; depends=[aws_signature dplyr googleAuthR googleLanguageR httr knitr magrittr mscstts tuneR]; }; text2vec = derive2 { name="text2vec"; version="0.6"; sha256="0r75cv77x2zm1z66s95hic71dpbqmybz39n48q6mz7gfd3m7312y"; depends=[data_table digest lgr Matrix mlapi R6 Rcpp rsparse stringi]; }; textTinyR = derive2 { name="textTinyR"; version="1.1.7"; sha256="17c3vciqx2i0h0jkqsiva8kp6pwcrscwgyxf804sjvdbym0pwc7d"; depends=[BH data_table Matrix R6 Rcpp RcppArmadillo]; }; @@ -17306,7 +17309,7 @@ in with self; { tidygate = derive2 { name="tidygate"; version="0.4.7"; sha256="0g5k136bgcvs9hzach3wlf97npdgy52anx7m7xjg6ixgf9rvqw70"; depends=[dplyr lifecycle magrittr purrr RColorBrewer rlang scales stringr tibble tidyr viridis]; }; tidygenomics = derive2 { name="tidygenomics"; version="0.1.2"; sha256="1cnwmmmzp9kg4k7iy2kgb22bdllpnz257pv1ahy3l11zy6bl48fc"; depends=[dplyr fuzzyjoin IRanges purrr Rcpp rlang tidyr]; }; tidygeoRSS = derive2 { name="tidygeoRSS"; version="0.0.1"; sha256="0bppkwbxmm8ps1cnrhzxkzm2pbi3s5bfiwx8fcrp31x81jl61w1x"; depends=[anytime dplyr httr jsonlite magrittr purrr rlang sf strex stringr tidyRSS xml2]; }; - tidygeocoder = derive2 { name="tidygeocoder"; version="1.0.4"; sha256="1n7k7h14027xc2c15vvkg131l0kzzamk1yd4r2d821yll3ccnwm4"; depends=[dplyr httr jsonlite lifecycle progress tibble]; }; + tidygeocoder = derive2 { name="tidygeocoder"; version="1.0.5"; sha256="1ffj8ka5miv3jnds7fdrkcqdc3m2w1ab724z9m10biky213skqka"; depends=[dplyr httr jsonlite lifecycle progress tibble]; }; tidygraph = derive2 { name="tidygraph"; version="1.2.0"; sha256="17qjns33zcj82jcsl7bn7i4zxcm7ric50zyf7agi0i01zi16qz85"; depends=[dplyr igraph magrittr pillar R6 Rcpp rlang tibble tidyr]; }; tidyhydat = derive2 { name="tidyhydat"; version="0.5.4"; sha256="0pkh6pd8rvjlang5zf15c2ca465shi46ks3mbzyymdy5sdj63hdf"; depends=[cli crayon DBI dbplyr dplyr httr lubridate rappdirs readr rlang RSQLite tidyr]; }; tidyjson = derive2 { name="tidyjson"; version="0.3.1"; sha256="1rx5ncp20j9mhcziyqb0vgfq9061qylgvfwz27dsyz58r8fygwnq"; depends=[assertthat dplyr jsonlite magrittr purrr rlang tibble tidyr]; }; @@ -17345,7 +17348,7 @@ in with self; { tidyvpc = derive2 { name="tidyvpc"; version="1.2.0"; sha256="1xih8gdc44ddi5kqx8kq9i3pz21hddha87fpb58wjfr5hsaw18sy"; depends=[classInt data_table fastDummies ggplot2 magrittr mgcv quantreg rlang]; }; tidywikidatar = derive2 { name="tidywikidatar"; version="0.4.2"; sha256="006rcm8g5vqrbwvviaclynzrapff8yclqkmq3hkdljm5v972g5gj"; depends=[DBI dplyr fs glue jsonlite magrittr progress purrr rlang RSQLite stringr tibble tidyr usethis WikidataQueryServiceR WikidataR]; }; tidyxl = derive2 { name="tidyxl"; version="1.0.7"; sha256="1wg8h5fd2hd8ilshrbcs99q18p15687dx8j51v5pyd30pg5cab7b"; depends=[piton Rcpp]; }; - tiff = derive2 { name="tiff"; version="0.1-8"; sha256="18m17g5q3nz4v4wrqxnb129b1j02873g2vknddczkklf1pvq4x2b"; depends=[]; }; + tiff = derive2 { name="tiff"; version="0.1-10"; sha256="1zha6bzb1rmfl6n2xjkygs9wfi3ah9cjr7a6jzk4zqc5kvl58lak"; depends=[]; }; tiger = derive2 { name="tiger"; version="0.2.3.1"; sha256="0xr56c46b956yiwkili6vp8rhk885pcmfyd3j0rr4h8sz085md6n"; depends=[e1071 hexbin klaR lattice qualV som]; }; tigerhitteR = derive2 { name="tigerhitteR"; version="1.1.0"; sha256="0inyi12lf8bn7nbklf2rjixk6wrgrjcp8njv7knai4dgvv7v0rfa"; depends=[Hmisc magrittr openxlsx zoo]; }; tigerstats = derive2 { name="tigerstats"; version="0.3.2"; sha256="0p5z4qh0aznj03rnhk4lpqfkwnsa5zgvj51rddkzligg9zx73xwl"; depends=[abd ggplot2 lattice manipulate MASS mosaic mosaicData rlang]; }; @@ -17391,7 +17394,7 @@ in with self; { tinyscholar = derive2 { name="tinyscholar"; version="0.1.4"; sha256="0lj5ax3m5kr18qf9xmrh6iyy00bp59wwi3ss96ynsyiajmndsajf"; depends=[curl dplyr ggplot2 gt jsonlite magrittr purrr R_utils rlang rvest stringr xml2]; }; tinyspotifyr = derive2 { name="tinyspotifyr"; version="0.2.2"; sha256="19nicp1ml73lylja2np52rcc070maxm9286fjm7bfx3zsblxmakc"; depends=[httr jsonlite]; }; tinytest = derive2 { name="tinytest"; version="1.3.1"; sha256="1mq31f7bzcz5bkgzl9khm1i80axfzra7gcjqxd2yqb4wrw1m3x4s"; depends=[]; }; - tinytex = derive2 { name="tinytex"; version="0.34"; sha256="16z6v06pmvg02rbxkqyiidasg1dryy759zabnqjw6y85nybr618x"; depends=[xfun]; }; + tinytex = derive2 { name="tinytex"; version="0.35"; sha256="04ng34kfds2isz4j9ch1xlii0dfclqay9fsc6wvr6sfifzv9fqyk"; depends=[xfun]; }; tipitaka = derive2 { name="tipitaka"; version="0.1.2"; sha256="0xf64bpzwywwjm0135c7zjn4ha0h1zj36rj2d4h8dskiq9z90xqi"; depends=[cpp11 dplyr magrittr stringi stringr]; }; tipom = derive2 { name="tipom"; version="1.0.2-1"; sha256="1gdfv0g5dw742j6ycmi0baqh6xcchp3yf2n1g8vn7jmqgz5mlhdr"; depends=[]; }; tippy = derive2 { name="tippy"; version="0.1.0"; sha256="00c9v07ax7l0x5wpx3ca8hqvdqs3p62d58igp51rsbh9x1ylgjcn"; depends=[htmltools htmlwidgets jsonlite shiny]; }; @@ -17440,6 +17443,7 @@ in with self; { tokenizers = derive2 { name="tokenizers"; version="0.2.1"; sha256="006xf1vdrmp9skhpss9ldhmk4cwqk512cjp1pxm2gxfybpf7qq98"; depends=[Rcpp SnowballC stringi]; }; tokenizers_bpe = derive2 { name="tokenizers.bpe"; version="0.1.0"; sha256="1pwgjrzdcsafpv9rlyly6fckcjiymz0xcjm9byavj069kc4c69mi"; depends=[Rcpp]; }; tolerance = derive2 { name="tolerance"; version="2.0.0"; sha256="001snzr2ipag3zprynydlbi9prkjzrllc054qh7m0qwkb3r19jjd"; depends=[MASS rgl]; }; + tomba = derive2 { name="tomba"; version="1.0.1"; sha256="1433jxghx8jrgy8r9kfp506vn58qpzp4wbzncks7fnignbb6cp50"; depends=[httr jsonlite testthat]; }; tongfen = derive2 { name="tongfen"; version="0.3.3"; sha256="0hn2zmb5fa390bbwg03mxzlp3qc5pr61qxm6gjydja29gcpvbk9m"; depends=[dplyr lifecycle PROJ purrr readr rlang sf stringr tibble tidyr]; }; toolmaRk = derive2 { name="toolmaRk"; version="0.0.1"; sha256="0pdr8lq4c11ia03v68lbfq38p3qp770mbj0nsbjsgbqi0pv9i1vx"; depends=[dplyr ggplot2 plyr reshape2]; }; tools4uplift = derive2 { name="tools4uplift"; version="1.0.0"; sha256="1izm9q2bj9l2nd9jn0fi3lf9hscfa0vmib58ypgpjsbsn0nd7p2h"; depends=[BiasedUrn dplyr glmnet latticeExtra lhs]; }; @@ -17464,6 +17468,7 @@ in with self; { toxEval = derive2 { name="toxEval"; version="1.2.0"; sha256="11rw8vjnz3kzikd59vbyiv8vc7dijpi6znyxlc7c4rpi41gs6c0m"; depends=[dplyr DT ggplot2 leaflet magrittr RColorBrewer readxl shiny shinyAce shinycssloaders shinydashboard tidyr]; }; toxtestD = derive2 { name="toxtestD"; version="2.0"; sha256="0b7hmpfhwg626r8il12shni0kw94cqnbj49y4vfh8gn98x1s6m48"; depends=[]; }; tpAUC = derive2 { name="tpAUC"; version="2.1.1"; sha256="0wix9qwcidj7xfqhh7bmrpnadd9qlkvg3515gaamdxkjbz2kyydc"; depends=[pROC]; }; + tpfp = derive2 { name="tpfp"; version="0.0.1"; sha256="0vm5qssaanvi0sck2hj1qgjra89a42i6nvzbva5z0aj2hkd5h4vh"; depends=[knitr readxl xlsx]; }; tpn = derive2 { name="tpn"; version="1.1"; sha256="062kim1wljg3pjzj1www8jljfpz35sylqykbp8w899srr3qmv22c"; depends=[pracma skewMLRM]; }; tpr = derive2 { name="tpr"; version="0.3-2"; sha256="0v2s35yjislzaw924r1mk7jqzs0bxx6kyd3g1sc9rxlflvlbp15y"; depends=[lgtdl]; }; tracer = derive2 { name="tracer"; version="1.0.0"; sha256="1jdh4ljcz7d0w2y5miggqkvv397jdx7fn108hbjw93af2gnh698q"; depends=[clisymbols crayon prettycode]; }; @@ -17531,7 +17536,7 @@ in with self; { treespace = derive2 { name="treespace"; version="1.1.4.1"; sha256="177n1h4yjvfmdsyy4anwi1gfxcxxvhdlyqagn74ni3pi6mxvjp4s"; depends=[ade4 adegenet adegraphics adephylo ape combinat distory fields htmlwidgets MASS phangorn phytools Rcpp rgl RLumShiny scatterD3 shiny shinyBS]; }; treestartr = derive2 { name="treestartr"; version="0.1.0"; sha256="05rxy9lmb77ng4266871sd881mlp4rd5qalvsd7ps2x2j4plaqf4"; depends=[ape phytools]; }; treestructure = derive2 { name="treestructure"; version="0.1.0"; sha256="0514q53bdwv9fwd58srhr6lzw1j56fcd64hml8w4rv4wzcd6c01m"; depends=[ape Rcpp]; }; - treetop = derive2 { name="treetop"; version="0.0.1"; sha256="06ca5zn60d925r775v39cdlpiwh0g9hv6a01hh1v6s2hs0176ivr"; depends=[geometry lidR maptools pryr raster rasterVis RColorBrewer rgdal rgl rglwidget sf shiny sp spatstat_core spatstat_geom stars]; }; + treetop = derive2 { name="treetop"; version="0.0.3"; sha256="0mmvn6521p4m7xranlzb9cg0gfzg5dzlack2k8xls5s3ydpylirx"; depends=[geometry lidR pryr raster rasterVis RColorBrewer rgdal rgeos rgl sf shiny sp spatstat_core spatstat_geom stars]; }; trekcolors = derive2 { name="trekcolors"; version="0.1.3"; sha256="0jm85lrsqlpl1k62fbim48kprsqs50bm0dbajnk8f42x6i3m1xav"; depends=[ggplot2]; }; trekfont = derive2 { name="trekfont"; version="0.9.5"; sha256="1c0rwjmpg6b83kvkwrc0fcg1adx5is1g0wn01iss037jph5j0f2l"; depends=[]; }; trelliscopejs = derive2 { name="trelliscopejs"; version="0.2.6"; sha256="16i1km57yz8bl4ni919d3qmj8aj5l88l7byhd6ksh88ygpfl7wq8"; depends=[autocogs base64enc digest DistributionUtils dplyr ggplot2 gtable htmltools htmlwidgets jsonlite knitr progress purrr rlang tidyr webshot]; }; @@ -17614,7 +17619,7 @@ in with self; { tsibbletalk = derive2 { name="tsibbletalk"; version="0.1.0"; sha256="14j1gpimvlz9cgxgl1n68ngkqx4w2ai92782ifrpvc57lqy9cs7v"; depends=[crosstalk dendextend dplyr glue lubridate plotly R6 rlang shiny tsibble vctrs]; }; tsintermittent = derive2 { name="tsintermittent"; version="1.9"; sha256="1mrb6yrsjwj6j40n97sgg42ddvwhjnaiq9k7ka249bbq01gf2975"; depends=[MAPA]; }; tsmp = derive2 { name="tsmp"; version="0.4.14"; sha256="1ahqdizygbs49xbgn35fdb5drxwyx2z9ima4fm83aqwaan7wrrja"; depends=[audio checkmate doSNOW foreach magrittr progress Rcpp RcppParallel RJSONIO]; }; - tsna = derive2 { name="tsna"; version="0.3.4"; sha256="1lmllb0h17kwfayfsvl3j41g4qwd0s0qz93pv1y0g1lb7099dz88"; depends=[network networkDynamic statnet_common]; }; + tsna = derive2 { name="tsna"; version="0.3.5"; sha256="0rgzdf60j8ahi0zgypkj7wd7y7ghrkymc48kjfyz9w3ksmrzgqjf"; depends=[network networkDynamic statnet_common]; }; tsne = derive2 { name="tsne"; version="0.1-3"; sha256="0s8cv2pndkddq62rzlgzgfdjp1vjv5hz5i5957sllnb97vbzbzb6"; depends=[]; }; tsoutliers = derive2 { name="tsoutliers"; version="0.6-8"; sha256="02qd7ky416yp2l4cfl2yl7ckr2aidkps9cxkk03r9r7c5247c6zh"; depends=[forecast]; }; tspmeta = derive2 { name="tspmeta"; version="1.2"; sha256="028jbbd0pwpbjq4r6jcc1h0p7c4djcb9d2mvgzw1rmpphaxjvrkd"; depends=[BBmisc checkmate fpc ggplot2 MASS splancs stringr TSP vegan]; }; @@ -17684,7 +17689,6 @@ in with self; { twoway = derive2 { name="twoway"; version="0.6.3"; sha256="02z2syb0g92d97gjxfkarpil9b2n25s128606h071jl0s88cr4ar"; depends=[]; }; twowaytests = derive2 { name="twowaytests"; version="1.1"; sha256="00wz8l4ginv1pp1dbjwqbmn4q8i8fnmhz8x3v6riffndw5ag22f2"; depends=[car ggplot2 nortest onewaytests]; }; twoxtwo = derive2 { name="twoxtwo"; version="0.1.0"; sha256="03wrxzjv21df5c8w9bixfw42m82yf9grv1c4nlw5dy09lsfhl8sv"; depends=[dplyr forcats knitr magrittr rlang tidyr]; }; - txshift = derive2 { name="txshift"; version="0.3.6"; sha256="16ffkzgy9x1ng6338mb4flg3xy3cc32lrhqmb7rgpzs2fb0h20zr"; depends=[assertthat data_table ggplot2 hal9001 haldensify latex2exp lspline mvtnorm Rdpack scales stringr]; }; txtplot = derive2 { name="txtplot"; version="1.0-4"; sha256="00sriml48y70j18jz235dsfm5x3a81bnzskfp3hnv6cbjwwsmca4"; depends=[]; }; txtq = derive2 { name="txtq"; version="0.2.4"; sha256="1fvjprcwfqbw9c4sqcxv8r0jgvqmkip6d86r3cgrhwyic1ndk1l5"; depends=[base64url filelock R6]; }; typed = derive2 { name="typed"; version="0.0.1"; sha256="096rzsxjdycf55jx33cxk1284rzb2vcxvp298y4q6v9x0w36php3"; depends=[waldo]; }; @@ -17708,7 +17712,7 @@ in with self; { ucminf = derive2 { name="ucminf"; version="1.1-4"; sha256="01vggwg1w71k98qs6fhb0x1843vi322mf4g3hbclks94kcpkisx2"; depends=[]; }; udapi = derive2 { name="udapi"; version="0.1.3"; sha256="0qyn6fdh8ia913hn2dl0x99xsm20ps8zm52snswlyb00prinm668"; depends=[curl httr]; }; udpipe = derive2 { name="udpipe"; version="0.8.6"; sha256="1jqx9nbxl61k6s20rjkyghkv6lq1dzf63a9gljaxmv30hwgmgrvk"; depends=[data_table Matrix Rcpp]; }; - udunits2 = derive2 { name="udunits2"; version="0.13"; sha256="0yav7rm2afcx67xqrknybxgz7x63w78zyxa0xifvc0k2gz0d6mfi"; depends=[]; }; + udunits2 = derive2 { name="udunits2"; version="0.13.1"; sha256="1l889f8iy8qaacxfs6ll62d6hs8g8qsr5ynn24grpvp8dk8l888w"; depends=[]; }; ufs = derive2 { name="ufs"; version="0.4.3"; sha256="0gbmy7viwn55cj6z44aals02bvci0g6y2ya6x7fvjz3s4v3digd1"; depends=[digest diptest dplyr ggplot2 ggrepel ggridges gridExtra gtable htmltools kableExtra knitr pander plyr rmdpartials scales SuppDists]; }; ugatsdb = derive2 { name="ugatsdb"; version="0.2.1"; sha256="1r4h01x9a1rhvkrqa61n0a71q5xpyf26xzdf2i99l9vif6pg8rfv"; depends=[collapse data_table DBI RMySQL writexl]; }; ugomquantreg = derive2 { name="ugomquantreg"; version="1.0.0"; sha256="1a5vc1qgy3kp1by5bp296w980lkxcghzzxibhap2jg06jnzjfcq8"; depends=[gamlss gamlss_dist pracma Rcpp]; }; @@ -17775,7 +17779,7 @@ in with self; { urbin = derive2 { name="urbin"; version="0.1-12"; sha256="18zskhpcngpw0zanya88l8znhbac5f7a89kq231w59yml9ll7y52"; depends=[]; }; urca = derive2 { name="urca"; version="1.3-0"; sha256="1akaqwf3fvvvx4sgfn641fd4sj51s0701pvfl6s5hnz2k0iwh732"; depends=[nlme]; }; urlchecker = derive2 { name="urlchecker"; version="1.0.0"; sha256="03rjgsi344d6kacx4l2wh91gp269hddd5q567c9r52glbjp382d8"; depends=[cli curl xml2]; }; - urlshorteneR = derive2 { name="urlshorteneR"; version="1.4.3"; sha256="168y1mdxhn7lhhzmzw9a7h4g9xpwh294wl53aaqp23s486p46pdz"; depends=[assertthat cli clipr httr jsonlite lubridate miniUI shiny stringr]; }; + urlshorteneR = derive2 { name="urlshorteneR"; version="1.5.1"; sha256="0vcjjb3r4cmfp5i0zcm3bmn6q4i4xazz1m994yka4gp34zqbz67n"; depends=[assertthat cli clipr httr jsonlite lubridate miniUI shiny stringr]; }; urltools = derive2 { name="urltools"; version="1.7.3"; sha256="04x3my655dd287cbsszbnf75q0swmjlxxrblcsay7a8n3df3a830"; depends=[Rcpp triebeard]; }; uroot = derive2 { name="uroot"; version="2.1-2"; sha256="0dsb1vdr2bwy64v889svhvkadg5jl9cl77mfiw79vl18b7ixjzxx"; depends=[]; }; ursa = derive2 { name="ursa"; version="3.9.4"; sha256="1dnqwyw1xmgsb064spynqisyx503nqqq427qvc85fbp0qrhi631l"; depends=[jpeg png rgdal]; }; @@ -17808,7 +17812,7 @@ in with self; { utilsIPEA = derive2 { name="utilsIPEA"; version="0.0.6"; sha256="07avc0j6qkzqmznbydn0zdg743g7g7kn2bcx5n03m3wg0fqyggr7"; depends=[data_table dplyr RCurl stringdist stringr]; }; utiml = derive2 { name="utiml"; version="0.1.7"; sha256="16l64scyipj7plwyv6whv3h040sgvzxx43jhjxyhrcdci4pqwh94"; depends=[mldr ROCR]; }; utr_annotation = derive2 { name="utr.annotation"; version="1.0.4"; sha256="0lldkd5fw86qxngjfvigmkdzynz0712wsk9p51xliqlavivvnpny"; depends=[AnnotationFilter AnnotationHub BiocGenerics biomaRt Biostrings data_table doParallel dplyr ensembldb foreach GenomicFeatures GenomicRanges IRanges keras readr rtracklayer stringr tidyr vcfR xml2]; }; - uuid = derive2 { name="uuid"; version="1.0-2"; sha256="0yiqlrvsh93k361a89gn6jrnlp6gicnil733if0kw4lqw8zimv8b"; depends=[]; }; + uuid = derive2 { name="uuid"; version="1.0-3"; sha256="0il35jnci537r8zkinyiy5jp5q530p85ln6dswpj884zclrlcvj5"; depends=[]; }; uwo4419 = derive2 { name="uwo4419"; version="0.3.0"; sha256="0hk5qhyarjxz7ngj5ak37vx0rak6xv0hfb4sdrsbci3kv5fqijv7"; depends=[DescTools dplyr ggplot2 gmodels haven magrittr psych RColorBrewer rio tibble tidyr]; }; uwot = derive2 { name="uwot"; version="0.1.10"; sha256="08vxh085wnrxgwy35ksb4cr7ccjvd98pyr2zlgarqryfgc1bdqbf"; depends=[dqrng FNN irlba Matrix Rcpp RcppAnnoy RcppProgress RSpectra]; }; vICC = derive2 { name="vICC"; version="1.0.0"; sha256="13lcs7wwj1xfbjf3q7r8ssf00jg5hr1vjp2pyw0r42iz7mx47xjv"; depends=[coda ggplot2 nlme Rdpack rjags]; }; @@ -17890,7 +17894,7 @@ in with self; { vegalite = derive2 { name="vegalite"; version="0.6.1"; sha256="0dlzhvrg3nj6knyycdgg3d1vzq3dn9vxb34fjin9hzilszqmarbk"; depends=[base64 clipr digest htmltools htmlwidgets jsonlite magrittr webshot]; }; vegan = derive2 { name="vegan"; version="2.5-7"; sha256="0aj6m9l1vkh32sar6fyvq4p8j4h2f2f347w1300qnzgaa5lmhfz6"; depends=[cluster lattice MASS mgcv permute]; }; vegan3d = derive2 { name="vegan3d"; version="1.1-2"; sha256="01yyhrapdvs6rr5hw1ij4jnpz7mq005s35pn96snpy8ngn6ir386"; depends=[cluster rgl scatterplot3d vegan]; }; - vegawidget = derive2 { name="vegawidget"; version="0.3.2"; sha256="0qrwzavfghiv6kqs5amsj1w7gn94igg8x2hkl0hzb5m8hd9mlgin"; depends=[assertthat digest glue htmltools htmlwidgets jsonlite magrittr rlang]; }; + vegawidget = derive2 { name="vegawidget"; version="0.3.3"; sha256="0pyfj7ahz65pxcrf6vr8rl2zw1b7w5d6lvmcxsm1c81xw64xpc1n"; depends=[assertthat digest glue htmltools htmlwidgets jsonlite magrittr rlang]; }; vegclust = derive2 { name="vegclust"; version="2.0.0"; sha256="1zxgkq4ymg3w2dccfr448nmxp2kl7ws206djl2ymsrvzigivfqgs"; depends=[MASS sp vegan]; }; vegdata = derive2 { name="vegdata"; version="0.9.8"; sha256="05sgmas7hlhxx2j95b4r5y2m6hhxa2cswy80bhs8lmjmy3yqyig6"; depends=[foreign plyr xml2]; }; vegperiod = derive2 { name="vegperiod"; version="0.3.1"; sha256="178zp7hw7bicygzl4ql0a9llkmrk4kyszcvvl430pvsc5y6srg75"; depends=[]; }; @@ -17902,11 +17906,13 @@ in with self; { vennLasso = derive2 { name="vennLasso"; version="0.1.6"; sha256="0maydvx0qhdn5alqzqxjn485y9hw9qdr1xvgkmgwnjq59vni6d31"; depends=[foreach igraph MASS Matrix Rcpp RcppEigen RcppNumerical survival VennDiagram visNetwork]; }; venneuler = derive2 { name="venneuler"; version="1.1-0"; sha256="10fviqv9vr7zkmqm6iy2l9bjxglf2ljb7sx423vi4s9vffcxjp17"; depends=[rJava]; }; vennplot = derive2 { name="vennplot"; version="1.0"; sha256="0x59awa1zsjwk5qb1jzv6d2mn2fm4aq1lq8zlbnf1da0h4837yab"; depends=[Rcpp rgl stringr]; }; + verbalisr = derive2 { name="verbalisr"; version="0.2.1"; sha256="0jiyz3nsiw3nyq46l720x5qcrfr7mwdq7f3d8axgwchg4w4fl1i3"; depends=[pedtools ribd]; }; verhoeff = derive2 { name="verhoeff"; version="0.4.0"; sha256="0kpxpl5s5342ajg22cwb7y9ks240drp37q1g67n19krdy6ih14kz"; depends=[]; }; verification = derive2 { name="verification"; version="1.42"; sha256="0pdqvg7cm9gam49lhc2xy42w788hh2zd06apydc95q2gj95xnaiw"; depends=[boot CircStats dtw fields MASS]; }; versions = derive2 { name="versions"; version="0.3"; sha256="0zm49j785dgv7fyr1yl9q5f0dsk8hhpim5q5bpkgrkzv7pwjribd"; depends=[]; }; vertexenum = derive2 { name="vertexenum"; version="1.0.2"; sha256="16ywz3z1kzhb3knhhi2i5igm3djdaaxyyrw69wkc5saa7ayhdb4y"; depends=[numbers]; }; vesselr = derive2 { name="vesselr"; version="0.2.1"; sha256="1wzprnpiv04gxhqgki36gp1a0xj9l3mchllphwkfsdja4axq3prk"; depends=[oro_nifti pbapply pbmcapply]; }; + vetiver = derive2 { name="vetiver"; version="0.1.0"; sha256="0fmlff09mvg9j81vmnmyas5mj52i0fxkc3nxkf10y628x1xa3mrz"; depends=[butcher cli glue hardhat httr jsonlite pins plumber purrr rapidoc readr rlang tibble vctrs withr]; }; vetools = derive2 { name="vetools"; version="1.3-28"; sha256="1470xgqdq9n5kj86gdfds15k3vqidk3h99zi3g76hhyfl8gyl1c0"; depends=[lubridate maptools plyr scales sp stringr tis xts]; }; vetr = derive2 { name="vetr"; version="0.2.13"; sha256="0wbhi5wzwvvp645dg8na8mh1yxvvfzwdm34xqrqkzh6cvlvlby4c"; depends=[]; }; vfcp = derive2 { name="vfcp"; version="1.4.0"; sha256="0zj1ihqdx5x1695al1xyi8k001yw8x7gdss72myxlnh7b4flnp9m"; depends=[copula extraDistr stringr]; }; @@ -17932,14 +17938,14 @@ in with self; { viridisLite = derive2 { name="viridisLite"; version="0.4.0"; sha256="0siwr0vq80gs3sbyd542zjb0cl9av5zqdm0fqnym5g6ribf5b6c4"; depends=[]; }; virtualPollen = derive2 { name="virtualPollen"; version="1.0.0"; sha256="16q1smwh3ryids3pa7lb4i4pxmjjyl449w6fikkrm9ybj1k8gfcf"; depends=[cowplot ggplot2 mgcv plyr tidyr viridis]; }; virtualspecies = derive2 { name="virtualspecies"; version="1.5.1"; sha256="0l86awcjq6i1lqax596xy5qfmzwiz3cwp2rczvgg37fdrym97cm3"; depends=[ade4 raster rworldmap sp]; }; - virtuoso = derive2 { name="virtuoso"; version="0.1.6"; sha256="04lpypp9bbawnwmavw7xl0q448rava0bd95jwd10ywnbj5w2nkw6"; depends=[curl DBI digest fs ini odbc processx ps rappdirs]; }; - virustotal = derive2 { name="virustotal"; version="0.2.1"; sha256="0lky75al8zcvmfgx7a2s3bij8ya4avdsnv046lk7564zfd8rbymw"; depends=[httr plyr]; }; + virtuoso = derive2 { name="virtuoso"; version="0.1.8"; sha256="1smb8sjfqcp3jflplgf92swasxzrp72fnnqwyisf87pjknm91qsc"; depends=[curl DBI digest fs ini odbc processx ps rappdirs]; }; + virustotal = derive2 { name="virustotal"; version="0.2.2"; sha256="020kwhki5740857zd24xm18dg3whzhf527qhmfx1cxyqyld404wy"; depends=[httr plyr]; }; visNetwork = derive2 { name="visNetwork"; version="2.1.0"; sha256="0bqmy5m6b5hda4vzlwnpgabsbg60v68wicm556cqml6rpdzixfd2"; depends=[htmltools htmlwidgets jsonlite magrittr]; }; visR = derive2 { name="visR"; version="0.2.0"; sha256="1lbkr33kc69lv6czqjhabjdnn30f0d05ln5gzqmgr1l2w5r023wf"; depends=[broom cowplot dplyr DT ggplot2 gridExtra gt gtable kableExtra magrittr parcats rlang survival tidyr tidyselect]; }; visStatistics = derive2 { name="visStatistics"; version="0.1.1"; sha256="0lp6sf2wrjjp1zh77yhlgr9sfpls54z0bny0l36v98ik4qykky0f"; depends=[Cairo multcompView nortest vcd]; }; visTree = derive2 { name="visTree"; version="0.8.1"; sha256="1l07zfr2hagjpdxfw5290wa3ki4bl7iqxrrhda0d1bp3wmwfz0ai"; depends=[colorspace partykit rpart]; }; visa = derive2 { name="visa"; version="0.1.0"; sha256="1mx7nbbpxs4fdp781a75qvffa42dx2n6anslbfs9bnprmvzmljqr"; depends=[ggplot2 ggpmisc Matrix RColorBrewer reshape2]; }; - visachartR = derive2 { name="visachartR"; version="1.1.0"; sha256="05572bwlpyyhb9m6rkd5hx4fzvxlzhyxrzw1ks7p73nyqxw5mxrl"; depends=[htmlwidgets]; }; + visachartR = derive2 { name="visachartR"; version="1.1.1"; sha256="1qj0ma9dai1q1khwh0cckhi0r6jqbpm2qr6fhlv2skz19s2hvzjs"; depends=[htmlwidgets]; }; visae = derive2 { name="visae"; version="0.1.0"; sha256="06qrb7q5qwcmmp258psfxzxhmxy2j53gcz09gngspv0fwh92h7z8"; depends=[ca dplyr DT ggplot2 ggrepel magrittr rlang shiny shinyjs tidyr]; }; viscomplexr = derive2 { name="viscomplexr"; version="1.1.1"; sha256="1b45yi5xv4vq52pfa064ll3ghxgkwpbknzq94gg60vcvb7spd0if"; depends=[doParallel foreach plotrix Rcpp Rdpack scales]; }; visdat = derive2 { name="visdat"; version="0.5.3"; sha256="1ikqp29nncbw1xlwyb9dqqgcdk9q0bs3wxhnhnjpb11vcjv7cz2j"; depends=[dplyr ggplot2 glue magrittr purrr readr tibble tidyr]; }; @@ -18047,7 +18053,7 @@ in with self; { waveslim = derive2 { name="waveslim"; version="1.8.2"; sha256="0ibivnhz0l06sss5rrrcvyiwg3qpbyk3qn4vx4pp90kj09x4yg0k"; depends=[]; }; wavethresh = derive2 { name="wavethresh"; version="4.6.8"; sha256="1nz74bm7pgck1i9c28svxnic8wkwkm5dhc8bhrxiih5wxb36kcwk"; depends=[MASS]; }; waydown = derive2 { name="waydown"; version="1.1.0"; sha256="1yjx9cd8h8rsi44s7dcqrvfmsbjhw7vkg2z7bl4knsgbki0c978g"; depends=[Matrix numDeriv]; }; - wbacon = derive2 { name="wbacon"; version="0.5-2"; sha256="08c3rj8aiax7c2lnaa241n39d1c1yjlhvwqsfk1rw03sz7i4q2im"; depends=[hexbin]; }; + wbacon = derive2 { name="wbacon"; version="0.6"; sha256="0b91h71fs07knnqrbr167wdlb1iakafbadzr4zznndwplx3ygpbz"; depends=[hexbin]; }; wbs = derive2 { name="wbs"; version="1.4"; sha256="0ibrf30riavy6shaxgiznwh4gmnkx92260gsl0d74jkys98mlxdj"; depends=[]; }; wbsd = derive2 { name="wbsd"; version="1.0.0"; sha256="16jhimsq8symf6f2awczqkaqkdmlkzhmgk01iimhkvqlx8g2v219"; depends=[Rcpp RcppEigen]; }; wbstats = derive2 { name="wbstats"; version="1.0.4"; sha256="1va3lrksr5zg4k729xvbh176f8zcp9vfrvwxcp04znyh1rvmh6vz"; depends=[dplyr httr jsonlite lifecycle lubridate magrittr readr rlang stringr tibble tidyr]; }; @@ -18070,7 +18076,7 @@ in with self; { webfakes = derive2 { name="webfakes"; version="1.1.3"; sha256="0ncy5rma28b600vaxll7vlfhjx5xxpmhc2bkvhjb5z1cravpl4kx"; depends=[]; }; webglobe = derive2 { name="webglobe"; version="1.0.3"; sha256="0gbg4pai4cn7hdc1943aqpx4bn3vgc82zp93a1wl6bmmajv1da4b"; depends=[geojsonio httpuv jsonlite]; }; webmockr = derive2 { name="webmockr"; version="0.8.0"; sha256="0j40srwi0yasmllb9wsww4m6zkiyzqd549cis4dxd7c7p24hak8j"; depends=[base64enc crul curl fauxpas jsonlite magrittr R6 urltools]; }; - webp = derive2 { name="webp"; version="1.0"; sha256="1h17g2zaq6ipsb1w6ix9m68ddmp7dspmaqflqkskylh2n8jhk8cd"; depends=[]; }; + webp = derive2 { name="webp"; version="1.1.0"; sha256="199l6qhf7f96gqsg0bqzazvl09q383z4087vb1vjiy22k031zbh6"; depends=[]; }; webr = derive2 { name="webr"; version="0.1.5"; sha256="03yhlla74i71nphrfhr5sd57ykj7rjanh2a8nw3cq22rg9g668jk"; depends=[dplyr flextable ggforce ggplot2 magrittr moonBook psych purrr rlang rrtable scales shiny sjlabelled stringr tibble tidyr tidyselect vcd ztable]; }; webreadr = derive2 { name="webreadr"; version="0.4.0"; sha256="0l3l5g4zj5faxqi1kqwx9lq91gbj40z2q3csrsmpal08qnwkxs90"; depends=[Rcpp readr]; }; websearchr = derive2 { name="websearchr"; version="0.0.3"; sha256="1c6dwm5g5rjq0b12zrwwi5k9760jb0ph83v4j2gm8zm0x9dhiqm9"; depends=[]; }; @@ -18081,6 +18087,7 @@ in with self; { wec = derive2 { name="wec"; version="0.4-1"; sha256="10lqh43536d44d6082rpp11q1323pmjbmgrgb8v9mrk9c1ysf50w"; depends=[dplyr]; }; weco = derive2 { name="weco"; version="1.2"; sha256="1prk8hn782pd8g2rbbaj7y10vjimqs9n8i4rab6aw6fc3k759d6b"; depends=[]; }; weed = derive2 { name="weed"; version="1.1.1"; sha256="18kz10c580a25cxcghvp81irwqncvhjan3y5gnzy8gxm894q3p7m"; depends=[countrycode dplyr forcats geonames ggplot2 here magrittr purrr readxl rgeos sf stringr tibble tidyr tidytext]; }; + wehoop = derive2 { name="wehoop"; version="1.2.0"; sha256="15bsa5cyv5gfcajbl0c5rlqyafp7z8v2068js2gr6pbc6907cbhf"; depends=[cli data_table dplyr furrr future glue janitor jsonlite magrittr progressr Rcpp RcppParallel rlang rvest stringr tidyr usethis]; }; weibull4 = derive2 { name="weibull4"; version="1.0.0"; sha256="1a95yw67iy7dqib33v31apxmskl019zng66jrlflbqx6p2vjdh30"; depends=[]; }; weibullness = derive2 { name="weibullness"; version="1.19.8"; sha256="19s44mxxcnhngifxshsyjr3a9zvbwywmqgby5dxd73yid1p2k9mr"; depends=[]; }; weibulltools = derive2 { name="weibulltools"; version="2.0.0"; sha256="1flgnsivam9vyrs6hwn3119s5bzczjm5qb1xjwydl1cd6r2984k5"; depends=[dplyr ggplot2 lifecycle magrittr plotly purrr Rcpp RcppArmadillo sandwich segmented SPREDA survival tibble tidyr]; }; @@ -18225,7 +18232,7 @@ in with self; { xdcclarge = derive2 { name="xdcclarge"; version="0.1.0"; sha256="1j8wsidwmfjygqlwavxinv4bqc6rddy42jdmlknsjfrrs49yj8kn"; depends=[nlshrink Rcpp RcppArmadillo]; }; xergm_common = derive2 { name="xergm.common"; version="1.7.8"; sha256="03mjpafwfkmyj5ba84jydap9rp0i602izjlbd511xbxcw6dx2k0b"; depends=[ergm network]; }; xesreadR = derive2 { name="xesreadR"; version="0.2.3"; sha256="1pvdx0mxg2f885bhy4hb3kqzcgva4q7hzzaipkfzyi5lnjdsbc81"; depends=[bupaR data_table dplyr lubridate purrr stringr tidyr XML xml2]; }; - xfun = derive2 { name="xfun"; version="0.27"; sha256="11alh3kasiizfar0f667m5sj3s5443fggjv0541ghmxwlqrvyxf7"; depends=[]; }; + xfun = derive2 { name="xfun"; version="0.28"; sha256="0civd050r94w2vwfx3xgz1w36wkwrkm5dscdv5kb3klbvqwy8nqb"; depends=[]; }; xgb2sql = derive2 { name="xgb2sql"; version="0.1.2"; sha256="1gw5dw0ck5hip8mv347zaswrggk395bg2hgn02bvqs0d31jhmgvi"; depends=[data_table xgboost]; }; xgboost = derive2 { name="xgboost"; version="1.4.1.1"; sha256="1i706h6yhayzbqlqa1z6fgjc56kxm3isz0jw6d26fpyfjlw6z64z"; depends=[data_table jsonlite magrittr Matrix]; }; xgobi = derive2 { name="xgobi"; version="1.2-15"; sha256="03ym5mm16rb1bdwrymr393r3xgprp0ign45ryym3g0x2zi8dy557"; depends=[]; }; @@ -18307,7 +18314,7 @@ in with self; { yummlyr = derive2 { name="yummlyr"; version="0.1.1"; sha256="0xrk6g58laksz92d8mxck923sk4j92g55szrkxk123wjp5kg9vx6"; depends=[httr jsonlite]; }; zCompositions = derive2 { name="zCompositions"; version="1.3.4"; sha256="15cfqk1vzamz66y9idnrwxlrp2sirkp44gwkcmia4s13x5pwh8mf"; depends=[MASS NADA truncnorm]; }; zGPS_AO = derive2 { name="zGPS.AO"; version="0.1.0"; sha256="18dqssnj4gch1yg0qvrj4j2ry95sy6a9z8yz2zi8nzhhsj8dz1qq"; depends=[doParallel doRNG dplyr foreach ggplot2 hrbrthemes MASS plotly pscl questionr viridis]; }; - zTree = derive2 { name="zTree"; version="1.0.6"; sha256="1mywxrx6bw7dzhrdwyxbjzc8ikgvw423zycyji0jjr69cfhpmywv"; depends=[plyr]; }; + zTree = derive2 { name="zTree"; version="1.0.7"; sha256="005zk6wpchpss6865ki35yawgf668pn70163ah97rnfkhfaswm6y"; depends=[plyr]; }; zalpha = derive2 { name="zalpha"; version="0.2.0"; sha256="0wyk4smrch5c0jnzi8z0in1hcbfsddgw4n28dljj917wyg5cnmqd"; depends=[]; }; zbank = derive2 { name="zbank"; version="0.1.0"; sha256="0vzvlri3sncvbz2cdg8wzlpskm1lq9ji0jrfy5cx4ib19m6gxhpc"; depends=[crul jsonlite tibble]; }; zcurve = derive2 { name="zcurve"; version="1.0.9"; sha256="0hrgf8id2fdy5xakgif508kl8sddil01mwrq4fnchajzrgp2lb9w"; depends=[evmix nleqslv Rcpp Rdpack]; }; @@ -18356,12 +18363,17 @@ in with self; { AgroR = derive2 { name="AgroR"; version="1.2.3"; sha256="0vyn7jrk6g4m8srjc0qdn1yxygx8phr0zwnl86ng05hl78d1x35h"; depends=[ARTool cowplot crayon drc emmeans ggplot2 ggrepel gridExtra Hmisc hnp lme4 lmtest MASS multcomp multcompView nortest RColorBrewer reshape2 ScottKnott stringr]; broken = true; }; AlphaVantageClient = derive2 { name="AlphaVantageClient"; version="0.0.1"; sha256="095m850v945lw7i3qd812p28srdb5hdk9h52zf6bkr166zai1ni0"; depends=[httr xts]; broken = true; }; AnimalAPD = derive2 { name="AnimalAPD"; version="1.0.0"; sha256="1csa6disrg11hpxg4zw0jay15srw9lsgbhl1xgl7hpdr3nqsv3s7"; depends=[activityGCMM brms circular ggplot2 gridExtra loo overlap]; broken = true; }; + BALD = derive2 { name="BALD"; version="1.0.0-3"; sha256="1azyqami07g3ax60j0ws3d1qha65k0svn2v5c9pisni0qch5xql0"; depends=[lattice logspline rjags]; broken = true; }; + BCA = derive2 { name="BCA"; version="0.9-3"; sha256="0ksd6b0ykydgdn33x29bwwqkrp23cvdj3imps0l6qs1p4465j5nf"; depends=[car clv flexclust Rcmdr RcmdrMisc rpart]; broken = true; }; BNN = derive2 { name="BNN"; version="1.0.2"; sha256="13h9xqfdqnc9d8brx1xlmvb4nrkpwncwjz98y7i3wijih85wkikd"; depends=[mvtnorm]; broken = true; }; + BayesFM = derive2 { name="BayesFM"; version="0.1.4"; sha256="14m318nxb4aqxni4zm0p6g9pysx81rmay48qglwm98gmdjxigzzk"; depends=[checkmate coda ggplot2 gridExtra plyr]; broken = true; }; BayesPostEst = derive2 { name="BayesPostEst"; version="0.3.1"; sha256="0pfildzmqdwnj6h2k692ym9i37lwc65jqgjcx6h3cz8spcmzxm8y"; depends=[carData caTools coda dplyr ggplot2 ggridges HDInterval reshape2 rlang ROCR texreg tidyr]; broken = true; }; + CLA = derive2 { name="CLA"; version="0.96-1"; sha256="1nxzs0y6mid5f2903pxrkqc3rhk7vpax8wm588ddlz6c97y3m8gk"; depends=[]; broken = true; }; + ConfoundedMeta = derive2 { name="ConfoundedMeta"; version="1.3.0"; sha256="17l6dfff2v0a4p022qclrmkzi78ga9adkgxgrgk9imz0n9m9424d"; depends=[ggplot2 metafor]; broken = true; }; CytobankAPIstats = derive2 { name="CytobankAPIstats"; version="2.0"; sha256="0xczcgaxd8dv6fd1j5c8y4il852lq8859d1y16sxs8a3gqn9fbz2"; depends=[CytobankAPI pheatmap shiny shinyFiles xlsx]; broken = true; }; DNH4 = derive2 { name="DNH4"; version="0.1.11"; sha256="15a1hq8f8nz200apbm28dwyphl18rhicmf7irsdj0z1n1j898c44"; depends=[httr rvest tibble tidyr xml2]; broken = true; }; + DengueRT = derive2 { name="DengueRT"; version="1.0.1"; sha256="11qfg4l6y3j8qh4dcsz13xjjj1n0q71c9a3c180nm5lgqv0nwb81"; depends=[drc ggplot2 nlme]; broken = true; }; EGAnet = derive2 { name="EGAnet"; version="0.9.8"; sha256="1mdvp67wnbgmdhdwlgq8p20vhbv4m3fyvdw3zrcxy9zd8mchjydh"; depends=[dplyr GGally glasso igraph lavaan Matrix network NetworkToolbox qgraph semPlot]; broken = true; }; - EPP = derive2 { name="EPP"; version="0.3.3"; sha256="0wwiz9i6azy60vhgqs0d4pwd2w5gxp8wj724lw6zmldnk3n6vb0k"; depends=[assertthat curl deldir dplyr flexclust leaflet leaflet_extras maptools nngeo osrm plyr rgdal rgeos sf sp tibble]; broken = true; }; EpiSignalDetection = derive2 { name="EpiSignalDetection"; version="0.1.1"; sha256="04bagnx9fs0r3167hmwgc389fl5hq7l4j6kdjjmi360vcaimx9qi"; depends=[dplyr DT ggplot2 ISOweek knitr pander rmarkdown shiny surveillance]; broken = true; }; Eunomia = derive2 { name="Eunomia"; version="1.0.1"; sha256="06a42qsf3nx1pbynikkdvmbhh1rmgnfmiggdn86b3a0ij6cq0p2r"; depends=[DatabaseConnector RSQLite SqlRender]; broken = true; }; GEVACO = derive2 { name="GEVACO"; version="1.0.0"; sha256="0rslnxqbj1pbbnp849pdn6l9dyfib9w19a1q3fw7kdjfir76gk6a"; depends=[nlme RLRsim]; broken = true; }; @@ -18373,6 +18385,8 @@ in with self; { ISR3 = derive2 { name="ISR3"; version="0.98"; sha256="0mmpdl9ndlj9i0k3zl7ja0g7y9pm67igw925ld5qnz7a36plygxs"; depends=[]; broken = true; }; IceCast = derive2 { name="IceCast"; version="2.1.0"; sha256="0h3z68lfjw5s51601m17m2gvn12vkwj5gzc70dqzfjmxdkgv3p28"; depends=[coda maptools MASS ncdf4 raster Rcpp RcppArmadillo rgeos sp]; broken = true; }; IgorR = derive2 { name="IgorR"; version="0.8.1"; sha256="1lkiz3gxj8i1xbr5jp69z21rpk7kz3a68h29inp1qa7zi7gikmgx"; depends=[bitops]; broken = true; }; + JMcmprsk = derive2 { name="JMcmprsk"; version="0.9.10"; sha256="1hkylfrr2036vgkxfs98szm3883bmyvvyr0f3a8xygccf3pn28xc"; depends=[dplyr MASS pracma Rcpp reshape2 statmod]; broken = true; }; + KSgeneral = derive2 { name="KSgeneral"; version="1.0.0"; sha256="0pfrhmqgdxa13bjs1jgqkggbjfvwbmx6khkjxcfb96rnf2wccgyc"; depends=[dgof MASS Rcpp]; broken = true; }; LexisNexisTools = derive2 { name="LexisNexisTools"; version="0.3.4"; sha256="08v160s9znvv808wcw7319p3dk189bmpypg2wkdzzgkdby4gj3fr"; depends=[data_table pbapply quanteda quanteda_textstats stringdist stringi tibble]; broken = true; }; MAFDash = derive2 { name="MAFDash"; version="0.1.0"; sha256="0xk9zbdwmm597jck8v3w76d2s72k6amv8ya94y7jbnik60ndwnda"; depends=[bsplus canvasXpress circlize ComplexHeatmap crosstalk data_table dplyr DT ensurer flexdashboard GenomicRanges ggbeeswarm ggplot2 htmltools IRanges knitr maftools pheatmap plotly RColorBrewer reshape2 rmarkdown TCGAbiolinks]; broken = true; }; MHTcop = derive2 { name="MHTcop"; version="0.1.1"; sha256="1mr8y8brsi37b5qx3fqm0bj90dgknzzwhxfmvyd9kxbxh19whgxq"; depends=[copula matrixStats MCMCpack mvtnorm stabledist]; broken = true; }; @@ -18380,26 +18394,27 @@ in with self; { MLPA = derive2 { name="MLPA"; version="1.10.0"; sha256="1w8vhvs8ri8iyh068g59chz3mn0wapa4jr1wmhjlzwa2c651q2cx"; depends=[]; broken = true; }; MRMR = derive2 { name="MRMR"; version="0.1.4"; sha256="0dgbhlynaaka7mdzl6igwgcdzvy6cm2y8mbxaf9pfla8w3z8y0lq"; depends=[ggplot2 lmtest lubridate plyr reshape2]; broken = true; }; MVT = derive2 { name="MVT"; version="0.3"; sha256="0vinlv3d5daf8q7pd9xgs51nxz2njgdba5750vygmv883srlzi9d"; depends=[]; broken = true; }; - MedianaDesigner = derive2 { name="MedianaDesigner"; version="0.5"; sha256="1nd6sgqxx76yz6fyvdlvqvk7bg7dq8w4laamkabnzha35fsz567y"; depends=[devEMF flextable mvtnorm officer Rcpp RcppEigen RcppNumerical shiny shinydashboard shinyMatrix]; broken = true; }; MetaboLouise = derive2 { name="MetaboLouise"; version="1.0.0"; sha256="1agcp520in0wpxv3x2jvvmv61hasazdymnvjhzl66nwv8lifl98z"; depends=[igraph]; broken = true; }; + MixfMRI = derive2 { name="MixfMRI"; version="0.1-1"; sha256="0nqsvfr28m510gqwcv0s2b94k42m7m6s7ffsjxn6kxikh5p3y6gz"; depends=[EMCluster fftw MASS Matrix MixSim RColorBrewer]; broken = true; }; MoBPS = derive2 { name="MoBPS"; version="1.6.54"; sha256="1r15ag7c56bi54mby8kxb74l5v4qihdj7cr3i5vg8p5qpmvsff8m"; depends=[]; broken = true; }; Myrrix = derive2 { name="Myrrix"; version="1.2"; sha256="05x2h4ppjhfm0wlpwyp8ycjg59qj3gv0yqdilxrzb1lkrzln92xb"; depends=[Myrrixjars rJava]; broken = true; }; Myrrixjars = derive2 { name="Myrrixjars"; version="1.0-2"; sha256="1hhfg83z5kl6l250z3lippx3qc68k1wj1qlfzd6m66rgmk699gyl"; depends=[rJava]; broken = true; }; N2H4 = derive2 { name="N2H4"; version="0.5.9"; sha256="09ikdnn17zx9l683k6mrc4hifxnd5d7fjxm6qdvxxbn10dh6qgvj"; depends=[dplyr httr jsonlite lubridate rvest tibble tidyr xml2]; broken = true; }; - OVtool = derive2 { name="OVtool"; version="1.0.2"; sha256="0bm4iqzzdzy47ha90zm0nz4qm41q2rbdbckwpdnhk5c73l64xxvq"; depends=[Amelia devtools dplyr EnvStats ggplot2 ggrepel glue magrittr metR progress purrr rlang survey tibble tidyselect twang varhandle]; broken = true; }; OligoSpecificitySystem = derive2 { name="OligoSpecificitySystem"; version="1.3"; sha256="17mspf1ph2ybv046zckykfdcbrsiz40hrs6ib5mpwkfnrvsp1w7l"; depends=[tkrplot]; broken = true; }; OpenMPController = derive2 { name="OpenMPController"; version="0.2-5"; sha256="00hs8v47pr2d726z8izkfrgmayw147hdm16rr9rw1zs3ad216zjj"; depends=[]; broken = true; }; POPdemog = derive2 { name="POPdemog"; version="1.0.3"; sha256="0j83c853ligmw8ag4pb0vj46sfn2w2ynh4wvgkabzs688hxxni8r"; depends=[]; broken = true; }; Plasmode = derive2 { name="Plasmode"; version="0.1.0"; sha256="1qcni9zdckhsnw616jn7rdfd09kbl5wd4hljdja0w73jz1wd1z14"; depends=[arm epiDisplay foreign gbm glm2 lattice latticeExtra lme4 MASS Matrix mgcv nlme nnet RColorBrewer survey survival twang xtable]; broken = true; }; + QZ = derive2 { name="QZ"; version="0.2-1"; sha256="1xivasa5dppm9z02ki6ciqxj0ybxch41w1xszl9zqrf755b6f6xw"; depends=[Matrix]; broken = true; }; QuantumClone = derive2 { name="QuantumClone"; version="1.0.0.6"; sha256="1520jgkzp8g7gv7ggqhvlrdnpdyhygqjgsd1my5jq30afdqj6qmp"; depends=[DEoptim doParallel foreach fpc ggplot2 gridExtra NbClust optimx]; broken = true; }; RDFTensor = derive2 { name="RDFTensor"; version="1.3"; sha256="1kfhhn0lb1r61bkgxn7rv1smgk8b7vxbc8y97hdmg5argiywc65i"; depends=[doParallel foreach Matrix pracma]; broken = true; }; RNAsmc = derive2 { name="RNAsmc"; version="0.6.0"; sha256="0q4b24baabzx41zqygy6l2jnyzc4m7knmlnhra4hhc5f5cl5ab8r"; depends=[circlize RRNA]; broken = true; }; RNRCS = derive2 { name="RNRCS"; version="0.2.5"; sha256="19q78l8mh4701vqvr36vqc87n39s5ivzhiy5lvnxbd4dgibk1jr2"; depends=[ggplot2 magrittr rvest xml2]; broken = true; }; RSCABS = derive2 { name="RSCABS"; version="0.9.5"; sha256="193wbf1v18xv098i6abpglb239788d9gjzqbn8p3aai0la6y1pk3"; depends=[gWidgets2 gWidgets2RGtk2 R2HTML RGtk2]; broken = true; }; RefFreeEWAS = derive2 { name="RefFreeEWAS"; version="2.2"; sha256="1aya34iz5v3xfpj86x9ab998m7fdwl138ly007mgdayacvqi4a6y"; depends=[quadprog]; broken = true; }; - SDLfilter = derive2 { name="SDLfilter"; version="2.1.1"; sha256="1lyigd578ngsmqpkbbf6jv7lnffnccydlcd6vk9nvvynnx5x8r5a"; depends=[data_table dplyr ggmap ggplot2 ggsn gridExtra lubridate maps plotKML plyr pracma raster sp trip]; broken = true; }; + Rhpc = derive2 { name="Rhpc"; version="0.21-247"; sha256="0r4zikqzkcyyvywxq1s8jcq6h559mxilkmzpnl79781hh537jvii"; depends=[]; broken = true; }; SEAA = derive2 { name="SEAA"; version="0.9.6"; sha256="0f1j8pq3a0liyjxjlc91v8nm5y0fr8fq7qlhdayvkf1fx96srqs2"; depends=[clusterProfiler ggforce ggplot2 ggpubr ggrepel gridExtra org_Hs_eg_db org_Mm_eg_db reshape2 Rsubread tidyr]; broken = true; }; StatCharrms = derive2 { name="StatCharrms"; version="0.90.96"; sha256="1451aj1476qjpmxhpbgd8g55i7rp2msml64xsiy25h7x9g6d9w05"; depends=[cairoDevice car clinfun coxme gWidgets2 gWidgets2RGtk2 lattice multcomp nlme R2HTML RGtk2 RSCABS survival]; broken = true; }; + SymTS = derive2 { name="SymTS"; version="1.0"; sha256="17vhm00zd9yxl6li36bsfkm4rsizjsm93ibrzgqnkl72sqmmlwfi"; depends=[]; broken = true; }; TLBC = derive2 { name="TLBC"; version="1.0"; sha256="08w187akbhfbz6nrrf7avf02lrhgj7bbrjmim9gkh4wlbjhzvw67"; depends=[caret HMM randomForest signal stringr]; broken = true; }; TNRS = derive2 { name="TNRS"; version="0.1.0"; sha256="146shb1dg4iyaanrdr1l8nqpiqf05la1ai34w74z6wsd1mpcchqy"; depends=[jsonlite RCurl rjson]; broken = true; }; TrafficBDE = derive2 { name="TrafficBDE"; version="0.1.0"; sha256="1lnh9lbjxaradivnd1dkd2szggjh2r4v7klpyxb862dxsmdxxrqw"; depends=[caret data_table dplyr lubridate neuralnet RCurl zoo]; broken = true; }; @@ -18408,30 +18423,41 @@ in with self; { UKB_COVID19 = derive2 { name="UKB.COVID19"; version="0.1.1"; sha256="0626cix3v5j2nflqy6g0dc2101pif3p8x3r62d5kmn1si5p171gn"; depends=[data_table dplyr here magrittr questionr tidyverse]; broken = true; }; UncertainInterval = derive2 { name="UncertainInterval"; version="0.7.0"; sha256="1lywwjkbmlbxhp2ahmsw2f47i0p848cky7xx1lxrg5ydfzq9kzl5"; depends=[car MASS nloptr psych reshape2 shiny zoo]; broken = true; }; XPolaris = derive2 { name="XPolaris"; version="1.0.2"; sha256="1l05svscgkv9bzkawi2kp9zhchrhxxma3271b828j34pkrnnmq5m"; depends=[curl dplyr ggplot2 httr magrittr purrr raster sf tidyr]; broken = true; }; + aRbs = derive2 { name="aRbs"; version="0.1.3"; sha256="19s4x2w036xllrsarapmp8rvyxcsky82k4h9mfr2rbhdfid6h1f3"; depends=[crayon data_table dlstats dplyr DT ggplot2 lubridate progress purrr rvest shiny shinyBS shinycssloaders shinydashboard stringr xml2]; broken = true; }; + abmR = derive2 { name="abmR"; version="1.0.4"; sha256="1sz27ym4lfzsf8413p3zdq51gcn9lp3bbgjgah0wfas4v3yyfsp4"; depends=[geosphere ggplot2 googledrive gstat gtsummary kableExtra purrr raster rgdal rgeos rnaturalearth rnaturalearthdata sf sp swfscMisc table1 tmap]; broken = true; }; + abn = derive2 { name="abn"; version="2.5-0"; sha256="1fqmhw0mhdl6az1gpg0byvx5snhz1pl3fqikhyfjcjrc9xbsq8yw"; depends=[lme4 nnet Rcpp RcppArmadillo Rgraphviz rjags]; broken = true; }; + abstr = derive2 { name="abstr"; version="0.4.0"; sha256="1alipc1pajjbvs69swxn5xkbjryrmdx5fyrwnfwdrn8l2vkgw10w"; depends=[jsonlite lwgeom magrittr od sf tibble tidyr]; broken = true; }; adoption = derive2 { name="adoption"; version="0.6.4"; sha256="1xjkvj1ys2xmjgswqfsrry27zyqcc9hk9khl0j4s72gcc8az8sz6"; depends=[quadprog RandomFieldsUtils tkrplot]; broken = true; }; - aghq = derive2 { name="aghq"; version="0.2.1"; sha256="0c4yk2vcycxryrs0g5jnfsbwr0f2nwq660mmx3vsfsdqml2qdv5w"; depends=[Matrix mvQuad polynom rlang]; broken = true; }; + agroclim = derive2 { name="agroclim"; version="0.1.0"; sha256="16cyqplzmwziqwkicix0sr06zhc0yx615iv3hda0cxbdyf2rllk3"; depends=[abind cowplot easyNCDF ggforce ggplot2 ggpubr gtable multiApply ncdf4 plyr raster reshape sp zoo]; broken = true; }; amber = derive2 { name="amber"; version="1.0.3"; sha256="0kc7g5rb0wrs1id1k0qay56063gpffwvcll38983b1l3k215mxiv"; depends=[classInt doParallel foreach Hmisc latex2exp ncdf4 raster rgdal rgeos scico sp viridis xtable]; broken = true; }; anominate = derive2 { name="anominate"; version="0.6"; sha256="01p2qkqf88bzhwywyass5r8dwg2ycflmkbzmsps7fzy0kv3xyb02"; depends=[coda MCMCpack pscl wnominate]; broken = true; }; aptg = derive2 { name="aptg"; version="0.1.1"; sha256="0mdhgc0jrl2za3k2awm92vky2ghcssqq1x2h57ns9b17lwdrsdl4"; depends=[ape brranching phytools taxize xml2]; broken = true; }; artemis = derive2 { name="artemis"; version="1.1.1"; sha256="1v875xn0mvw7p7jdp6d3hpc4cp8yq2aq0b80rq1c619n9rkjq4ks"; depends=[BH ggplot2 lme4 loo Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; broken = true; }; aspline = derive2 { name="aspline"; version="0.1.0"; sha256="1xywp471ly6f0n88lwhpwlg54fizdkjxksli9c60vbi8r56n46mr"; depends=[dplyr fda ggplot2 magrittr Matrix mgcv pryr pspline Rcpp reshape2 rlang splines2 tidyr]; broken = true; }; ausplotsR = derive2 { name="ausplotsR"; version="1.2.6"; sha256="1vnf1rhg5frv1kc5bdssvljww6bw2q1cj29y4304851fifk8l502"; depends=[betapart curl ggplot2 gtools httr jose jsonlite mapdata maps maptools plyr R_utils simba sp vegan]; broken = true; }; + bRacatus = derive2 { name="bRacatus"; version="1.0.5"; sha256="1ir5q8q9kssbcakfi0lpixxgcmcla2p3j8a290p5h3zddbp41az6"; depends=[data_table geojsonio jsonlite maptools plotfunctions raster rgbif rgdal rgeos rworldmap sp]; broken = true; }; batchr = derive2 { name="batchr"; version="0.0.2"; sha256="0fkrv6dlyla7bbl00f16lypnz5idyjz9kdqslgbx3pnfwx5hngwx"; depends=[chk cli furrr hms hmstimer yesno]; broken = true; }; biblio = derive2 { name="biblio"; version="0.0.2"; sha256="1yx90cmkcm5vran3n0p8l3hz9sqny7bhzgvnlsa8f4fddh0ah78p"; depends=[stringr yamlme]; broken = true; }; binomialMix = derive2 { name="binomialMix"; version="1.0.1"; sha256="1ak3h0lgjmrv9miwn7fl6jvcp8xdld53swjz71q67q999s42np0m"; depends=[dplyr gmp lubridate MASS rlang Rmpfr stringr]; broken = true; }; + bmd = derive2 { name="bmd"; version="0.5"; sha256="0d4wxyymycb416sdn272292l70s1h2m5kv568vakx3rbvb8y6agy"; depends=[drc]; broken = true; }; boostr = derive2 { name="boostr"; version="1.0.0"; sha256="123ag8m042i1dhd4i5pqayqxbkfdj4z0kq2fyhxfy92a7550gib2"; depends=[foreach iterators stringr]; broken = true; }; caliver = derive2 { name="caliver"; version="2.0.0"; sha256="04qa3zrk70c8ak70djfh23jyfxs8293s8wzkk6cs0nyrknhaxzzj"; depends=[ggplot2 lubridate ncdf4 raster rworldmap]; broken = true; }; - cjbart = derive2 { name="cjbart"; version="0.1.0"; sha256="1lpqwm6py0xwmcj87crk9ivd96wy3kzfhkinv064d6dx5n4m4fax"; depends=[BART ggplot2 rlang tidyr]; broken = true; }; + chicane = derive2 { name="chicane"; version="0.1.7"; sha256="0gaq1icwbcn1lzj92qhmai2cwvkm26m8srw988cb6xd51v819v3l"; depends=[bedr data_table doParallel foreach gamlss gamlss_tr iterators knitr MASS rmarkdown]; broken = true; }; compstatr = derive2 { name="compstatr"; version="0.2.1"; sha256="0pg8yacfb7jvg9xr0gmis8a4g339isd77h6wr8dd6w900q47xac0"; depends=[dplyr fs httr janitor lubridate purrr readr rlang rvest sf stringr tibble tidyr xml2]; broken = true; }; connections = derive2 { name="connections"; version="0.1.1"; sha256="08fbyzyp26nh1a46p0zi3q0wzgl0cd9bjp4lhw2bwv1bv7yayamp"; depends=[DBI dbplyr dplyr pins rscontract uuid]; broken = true; }; contextual = derive2 { name="contextual"; version="0.9.8.4"; sha256="0lww36nymg2cla83jdvl7a42cwn0il20apciz0ddplq8rw2i0a91"; depends=[data_table doParallel foreach Formula iterators itertools R_devices R6 rjson]; broken = true; }; + cplexAPI = derive2 { name="cplexAPI"; version="1.4.0"; sha256="00h2zir1ffzjiglfyq8bsfmgq9z155jr0k0fxv8fsbfyw2x9dg10"; depends=[]; broken = true; }; + cubfits = derive2 { name="cubfits"; version="0.1-3"; sha256="0i2iybm9vpyqnahzka66yms1namdd36bz1i1yjy74qsc1h995rga"; depends=[coda foreach]; broken = true; }; cuml = derive2 { name="cuml"; version="0.2.1"; sha256="1dmk1gvvzkwfra63qslax9cgqjbsiqam5wcjl955wpb0wdqpa54k"; depends=[ellipsis hardhat magrittr parsnip Rcpp rlang]; broken = true; }; + cyclestreets = derive2 { name="cyclestreets"; version="0.5.0"; sha256="1a7b28832w1qjqfr6i8apki01y53fq9nwg2bjzgyly363b0aghq4"; depends=[geodist httr jsonlite magrittr sf stringr]; broken = true; }; danstat = derive2 { name="danstat"; version="0.1.0"; sha256="1wb4v4s9qc7qna7jgd1kk0xvyaqmxhnmjvr5wlk5jjl355lhjxbc"; depends=[httr jsonlite readr]; broken = true; }; + data_validator = derive2 { name="data.validator"; version="0.1.5"; sha256="1p2dzn9q3vrqs3askp8ccriaxyhay8iyqhnaryr1drycwrd13wi8"; depends=[assertr dplyr htmltools htmlwidgets knitr purrr R6 rlang rmarkdown shiny shiny_semantic tibble tidyr]; broken = true; }; dataReporter = derive2 { name="dataReporter"; version="1.0.0"; sha256="12rwjd46h35cydvfx5qhb4rssqpm94b628zr06gy9nhwydnajn5x"; depends=[ggplot2 gridExtra haven htmltools magrittr pander rmarkdown robustbase stringi whoami]; broken = true; }; diffman = derive2 { name="diffman"; version="0.1.1"; sha256="08b4kqxfg8pmyl2xg8flb581s9wnkdcy5rrmrxp8a89y265qmirx"; depends=[data_table dplyr igraph Matrix progress Rcpp sf tidyverse]; broken = true; }; dpa = derive2 { name="dpa"; version="1.0-3"; sha256="0dmwi68riddi1q4b10c12wx6n7pqfmv30ix5x72zpdbgm72v343h"; depends=[igraph sem]; broken = true; }; dynamicGraph = derive2 { name="dynamicGraph"; version="0.2.2.6"; sha256="1xnsp8mr3is4yyn0pyrvqhl893gdx2y1zv8d2d55aah2xbfk0fjj"; depends=[ggm]; broken = true; }; dynatopmodel = derive2 { name="dynatopmodel"; version="1.2.1"; sha256="0lpfhj69bvagqzzg2kjqvn9xx8f93ii34flrrns20z3bxla6gds9"; depends=[deSolve lubridate maptools raster rgdal rgeos sp topmodel xts zoo]; broken = true; }; + dynr = derive2 { name="dynr"; version="0.1.16-2"; sha256="0k9lvrxdwfjnwbln6lv2qhqr55xrxzkw8k6b2dx1dqz76a2qr2n7"; depends=[car deSolve fda ggplot2 latex2exp magrittr MASS Matrix mice numDeriv plyr Rdpack reshape2 stringi tibble xtable]; broken = true; }; elo = derive2 { name="elo"; version="2.1.1"; sha256="1i6qcw2plw12v065142kx58d911zr1gcsd1xic152zxvh89nmhxx"; depends=[pROC Rcpp]; broken = true; }; endogMNP = derive2 { name="endogMNP"; version="0.2-1"; sha256="0maxcp321ngbxrg0i23nlwhj849v771xahh53367x928ss4f8v7i"; depends=[]; broken = true; }; evaluator = derive2 { name="evaluator"; version="0.4.3"; sha256="1gccymjb1ad3xw3kmqafchazv9rid6v6c3h8w96ai5b2jh8zlgwk"; depends=[cli crayon dplyr extrafont ggplot2 magrittr mc2d purrr readr readxl rlang rstudioapi scales stringi tibble tidyr vctrs viridis]; broken = true; }; @@ -18446,30 +18472,47 @@ in with self; { glinvci = derive2 { name="glinvci"; version="1.1.4"; sha256="0s8qmrqajsrmzp30xgi49n96ks22dxxa0c5psqkw67n66h39njlh"; depends=[ape BB lbfgsb3c numDeriv plyr Rcgmin rlang]; broken = true; }; gorica = derive2 { name="gorica"; version="0.1.1"; sha256="06022nkdqmd653bxi81ks4lq5gx3j9jxbwkx1wjmmj4ph6qabkmn"; depends=[bain lavaan limSolve lme4 MASS mvtnorm quadprog]; broken = true; }; graphscan = derive2 { name="graphscan"; version="1.1.1"; sha256="1dgjb0grdymhimdgwnddjcivgy2i9r1i1nni4v9mx0447skcahk9"; depends=[ape rgl snowfall sp]; broken = true; }; + hal9001 = derive2 { name="hal9001"; version="0.4.1"; sha256="0hclz3rrav536dz7hqzdzck0hxx24pd59p3s2flhkx60wqxajvrq"; depends=[assertthat data_table glmnet Matrix origami Rcpp RcppEigen stringr]; broken = true; }; + haldensify = derive2 { name="haldensify"; version="0.2.1"; sha256="1mckpr70q10qv2m70rbwwzb7a6mvk8hwrkvbnh7v2qksd5lcfxn8"; depends=[assertthat data_table dplyr future_apply ggplot2 hal9001 latex2exp matrixStats origami Rdpack rlang rsample scales tibble]; broken = true; }; happybiRthday = derive2 { name="happybiRthday"; version="0.0.1"; sha256="0rrvi5kx09p74xwxvqcwibbh4qjlk4jxb89grx74chjxk9ak2yv8"; depends=[data_table dplyr gh lubridate tidyr]; broken = true; }; + hddtools = derive2 { name="hddtools"; version="0.9.4"; sha256="011yhs8c6riimz63pa2am56n5aip2yk5gryx2amvk29pzp1v6my9"; depends=[curl raster readxl rgdal sp tidyr XML zoo]; broken = true; }; hdpGLM = derive2 { name="hdpGLM"; version="1.0.0"; sha256="04mn0cbbx66218rsd273yh29h28f1xl8k0whwlyn6hrg035mlk0x"; depends=[coda data_table dplyr formula_tools ggjoy ggplot2 ggpubr ggridges Hmisc isotone LaplacesDemon magrittr MASS MCMCpack mvtnorm purrr questionr Rcpp RcppArmadillo rprojroot stringr tibble tidyr tidyverse]; broken = true; }; healthforum = derive2 { name="healthforum"; version="0.1.0"; sha256="13ih00amv9hrpngm6pxc8vzqzhx8c0yqgaprxdcp5li90lg5r3av"; depends=[magrittr purrr rvest stringr tokenizers xml2]; broken = true; }; hockeyR = derive2 { name="hockeyR"; version="0.1.1"; sha256="1rzm67ib4i7qa0x302g9k5bm5vabg39l1da5brnkkh9fp6v37lb6"; depends=[dplyr glue httr janitor jsonlite lubridate magrittr polite purrr rvest stringr tidyr zoo]; broken = true; }; incadata = derive2 { name="incadata"; version="0.9.1"; sha256="0987zazkp3cxvk88i3yqb70s2i1cg108vc8wyhh2867s3rqdrpgh"; depends=[decoder rvest sweidnumbr xml2]; broken = true; }; ipmisc = derive2 { name="ipmisc"; version="6.0.2"; sha256="1dn815p2k1v371pv5fra6541zwc1hyjzxlx11m8pgfcyrfgmicyk"; depends=[dplyr magrittr rlang tibble tidyr zeallot]; broken = true; }; + itemanalysis = derive2 { name="itemanalysis"; version="1.0"; sha256="1ksbd69mca45jlr2gpars87cf4jfm5rx6sz009sv6a83x831x5rq"; depends=[car ggplot2 polycor]; broken = true; }; jdx = derive2 { name="jdx"; version="0.1.4"; sha256="0jqf0nkdyv9g4rifzlkls0n64fdcma2yphwl478772jlgfmxm2jb"; depends=[rJava]; broken = true; }; jsr223 = derive2 { name="jsr223"; version="0.3.4"; sha256="0rir9v0qhnbl2rgkx1qz2ydj68ba9ccbdzsg6y1acczdhpl03j51"; depends=[curl jdx R6 rJava]; broken = true; }; + kmcudaR = derive2 { name="kmcudaR"; version="1.1.0"; sha256="16dkv9ag5375zc23nqakbg7v6knxvh1pips9rjsls0d7rw2bg1bs"; depends=[Rcpp RcppEigen]; broken = true; }; lass0 = derive2 { name="lass0"; version="1.1.0"; sha256="01fafgyhi3fw8ldjw2gf0z9w1si7il3ailwm197fxmw4wqgys9fl"; depends=[doRNG foreach ismev lpSolve]; broken = true; }; libproj = derive2 { name="libproj"; version="8.1.0-1"; sha256="16mavs0kpbn1lskfgyzgw5ns270kdvvh2991c8w26cyl23zrcys6"; depends=[cpp11 rappdirs]; broken = true; }; likeLTD = derive2 { name="likeLTD"; version="6.3.0"; sha256="1mjf4667xd9pf2684d7vqaj54l5s9pgljn4vkfp32wzbfknq6y8r"; depends=[DEoptim gdata ggplot2 gtools rtf]; broken = true; }; + lmSupport = derive2 { name="lmSupport"; version="2.9.13"; sha256="0ln5c91mbxkymgnv2nw5m3nrm5bwckpikgb9x1qhmjc55m98wkb8"; depends=[AICcmodavg car gplots gvlma lme4 pbkrtest psych pwr]; broken = true; }; machQA = derive2 { name="machQA"; version="0.1.4"; sha256="1rdrjy9sxql2c9y691a1jrmgsv7m1ihsschixxb6wc7aahf7mav6"; depends=[machina plyr]; broken = true; }; machina = derive2 { name="machina"; version="0.1.6"; sha256="009mzqb5jgnilj9b5ldmm5600008bljlqacm8jjxvqsfnfdfg8zv"; depends=[DT httr jsonlite lubridate rhandsontable xts]; broken = true; }; + mcmcabn = derive2 { name="mcmcabn"; version="0.4"; sha256="0ym7ngai8pv9xalh1s53p8f96s8xpc05zi6ryih2rjv449ib06kq"; depends=[abn coda cowplot ggplot2 ggpubr gRbase]; broken = true; }; migrbc = derive2 { name="migrbc"; version="2.0.9"; sha256="1nbxdm70a9lvbp4sw78719hdpbqnziw1y7r4xk8i390q2c195am1"; depends=[dplyr futile_logger lubridate Rcpp stringr]; broken = true; }; miraculix = derive2 { name="miraculix"; version="0.9.23"; sha256="0i08v5hq43296k3sa7akpq4h5dmvpkgn7cfpqwdyp0qaxkqk0k0s"; depends=[RandomFieldsUtils]; broken = true; }; + mixlink = derive2 { name="mixlink"; version="0.1.5"; sha256="0ywgrcplhspc0x5fniw52xqz20y7j9mwgy4ky8lv3vii659mr52m"; depends=[mvtnorm numDeriv Rcpp RcppGSL]; broken = true; }; + mmpca = derive2 { name="mmpca"; version="2.0.1"; sha256="05vir7hjv5dccfcizyn5n6qxx2p53111if16l44a7ifg5k599xj9"; depends=[digest gsl Rcpp RcppEigen]; broken = true; }; mnlogit = derive2 { name="mnlogit"; version="1.2.6"; sha256="0dfwpkl8g7ap5xr48smiv8vdbamd2r1liy9nwpsn0kcsr9cj65n9"; depends=[Formula lmtest mlogit]; broken = true; }; + monoreg = derive2 { name="monoreg"; version="1.2"; sha256="16n622j1j998a5fhn1c1qbzk5bfa5h09d95ry89gsd00p40hqg0a"; depends=[]; broken = true; }; + mosaic_find = derive2 { name="mosaic.find"; version="0.1.2"; sha256="1fzgksh8sp701qjfrvjl2bg967qjkjpilxsfkrazhw71cgmzjgjl"; depends=[minpack_lm]; broken = true; }; + mvst = derive2 { name="mvst"; version="1.1.0"; sha256="03q0kdychsmn4wcn50b6dqhxn4f2mjvrr5rac942xdv75w8qklc9"; depends=[MCMCpack mnormt mvtnorm]; broken = true; }; nCal = derive2 { name="nCal"; version="2021.9-12"; sha256="133dpy2rp8sabwdlk0wjxs9rzixzcja73im94qaw26z5xsnaydhf"; depends=[drc gdata gWidgets2 kyotil]; broken = true; }; - ndtv = derive2 { name="ndtv"; version="0.13.1"; sha256="18d51xp62fis63p2prybhigxx03yhbrzs0k1yhh9j21548wzhb2l"; depends=[animation base64 jsonlite MASS network networkDynamic sna statnet_common]; broken = true; }; + npphen = derive2 { name="npphen"; version="1.1-0"; sha256="0pbf9sqdapl5q09g1hj5hi4j2wigrd0b6s0gbv1gx4wn68alrals"; depends=[ks lubridate raster rgdal rts snow]; broken = true; }; ntwk = derive2 { name="ntwk"; version="1.0.0"; sha256="1c12c3pq992f02z3ikx17zv2djq9d9ly232ha0j5jswsksqzx024"; depends=[assertthat copCAR ghyp Matrix mvtnorm pracma zoo]; broken = true; }; oc = derive2 { name="oc"; version="1.2"; sha256="0cw1gvz6gk8j718zmywqp03h9cnzn132nwbv45gr00xg2s9h7dk7"; depends=[pscl]; broken = true; }; - occCite = derive2 { name="occCite"; version="0.5.0"; sha256="09y1vqjshrh8mbw1xsmcfrcxy5ccx14gf6p5mfzlwm3ywsi84hcc"; depends=[bib2df BIEN DBI dplyr ggplot2 htmltools httr leaflet lubridate RColorBrewer rgbif rlang RPostgreSQL stringr taxize tidyr viridis waffle]; broken = true; }; + onemap = derive2 { name="onemap"; version="2.1.3"; sha256="0fwkr845zz0j8ccrwpksb28lly1rsgj3603ak1aqqgmlx6481p08"; depends=[ggplot2 MDSMap plotly Rcpp reshape2]; broken = true; }; pairwiseComparisons = derive2 { name="pairwiseComparisons"; version="3.1.6"; sha256="0aiq8gr33pr5lia6cf6ak7zy5z81am5j5a0py0a2m9ljgmsgmn4s"; depends=[BayesFactor dplyr insight ipmisc parameters PMCMRplus purrr rlang WRS2]; broken = true; }; - pct = derive2 { name="pct"; version="0.9.1"; sha256="0chqvaa8cfv3s3zf940hzca90967raakxndyxcg08acysvfq6fir"; depends=[boot readr sf stplanr]; broken = true; }; + panelAR = derive2 { name="panelAR"; version="0.1"; sha256="1ka2rbl9gs65xh2y2m4aqwh5qj4szibjy101hqfmza9wmdh25gpq"; depends=[car]; broken = true; }; + pbdBASE = derive2 { name="pbdBASE"; version="0.5-3"; sha256="1f90bk1mp1s03177b9g5w5ni77jzrzc1pl3bjx0w0fjbjs1myn79"; depends=[pbdMPI pbdSLAP]; broken = true; }; + pbdPROF = derive2 { name="pbdPROF"; version="0.4-0"; sha256="174jwrkvw5qz1430y6id01w1czlw45j1yw8a8dyw36knrmvmdz10"; depends=[]; broken = true; }; + pbdRPC = derive2 { name="pbdRPC"; version="0.2-1"; sha256="1pz71zfs9qw96dj3h5mrm734vbbi4drlv9hrw91dbzm3a7jsxg4q"; depends=[]; broken = true; }; + pbdSLAP = derive2 { name="pbdSLAP"; version="0.3-1"; sha256="1iwc5iw6q7r6p08yngczqlbqk779nsx2rmxc3fajzl6d73rprshl"; depends=[pbdMPI rlecuyer]; broken = true; }; pedometrics = derive2 { name="pedometrics"; version="0.7.0"; sha256="0rqldc67yrcg16i5q9wrmfmh3lw3qrfdxwdb4mxkjxx18v4fv737"; depends=[lattice latticeExtra Rcpp]; broken = true; }; + permGPU = derive2 { name="permGPU"; version="0.15"; sha256="1bxydc5dw7ka45k6ban35d5xb1dw9yq9480qns8b39cc0x3acmhc"; depends=[Biobase foreach RUnit survival]; broken = true; }; pm4py = derive2 { name="pm4py"; version="1.2.7"; sha256="11xbsmsc9pxd98fy28l3nxzhb6c2pwvh1gmm34jnqn0rjbpb2n9i"; depends=[bupaR petrinetR purrr reticulate stringr]; broken = true; }; pmdplyr = derive2 { name="pmdplyr"; version="0.3.3"; sha256="1grnqqydi84hnig1522lv4xbh9ds32wnq7sha7jn1q4186wlz1qa"; depends=[dplyr lubridate magrittr pillar rlang tibble tidyr tidyselect vctrs]; broken = true; }; podr = derive2 { name="podr"; version="0.0.5"; sha256="135nq0dw1x6ngf6mxy3yds3xsxhaf5rnv1cmhavlrklhdfygc0a4"; depends=[assertthat DBI dplyr lubridate magrittr odbc plogr RPostgres rstudioapi shiny stringr tibble]; broken = true; }; @@ -18477,24 +18520,32 @@ in with self; { psyosphere = derive2 { name="psyosphere"; version="0.1.6"; sha256="1hcas3jk2n11lyw1ysmci0sysxf7qg9h2msqqg7q9nqp5gbf90np"; depends=[geosphere ggplot2 Hmisc lubridate plyr rgdal RgoogleMaps sp]; broken = true; }; qbld = derive2 { name="qbld"; version="1.0.1"; sha256="0agx32f2pf1hzs3and40zd7kfkjml7qjbnn0im4dr2v10h1jz6c0"; depends=[knitr mcmcse Rcpp RcppArmadillo RcppDist rmarkdown stableGR]; broken = true; }; qoma_smuggler = derive2 { name="qoma.smuggler"; version="0.0.1"; sha256="03p9i0kr6i3adpb9lcszcmdr9p26nfy7f8hw2sbydazglaw4hscr"; depends=[lubridate rhli tibble]; broken = true; }; + rGEDI = derive2 { name="rGEDI"; version="0.1.11"; sha256="0fkvy4p82jyfbbfymkfbrdyh13hk6a6wghk2myb64p5nhz8kv7iz"; depends=[bit64 curl data_table fs getPass ggplot2 hdf5r jsonlite lazyeval raster RColorBrewer rgdal rgeos sp]; broken = true; }; rModeling = derive2 { name="rModeling"; version="0.0.3"; sha256="0xrjxayp59f31wwcqqkzs5my2j2lpbv1f4pp709fmqxz02vbdzhv"; depends=[caret e1071 MASS]; broken = true; }; rabhit = derive2 { name="rabhit"; version="0.1.5"; sha256="0dqzcv241g2b2slygq87w4qkdxalr58zs61k7485b8745xansxmv"; depends=[alakazam cowplot data_table dendextend dplyr fastmatch ggdendro ggplot2 gridExtra gtable gtools htmlwidgets plotly plyr RColorBrewer reshape2 rlang splitstackshape stringi tidyr tigger]; broken = true; }; + rawr = derive2 { name="rawr"; version="0.1.3"; sha256="0k0x1pmxs73j6dmjg33n4hhwjwzpnhzbmmmjza6kw7hj6lfmipx4"; depends=[clipr dplyr jsonlite rvest stringr xml2]; broken = true; }; rdaemon = derive2 { name="rdaemon"; version="1.0.6"; sha256="1qr6v7kgk9nd5qp96667x51331xmpp1yz1r190dgd1fqigw735s5"; depends=[base64enc futile_logger Rcpp]; broken = true; }; - rdomains = derive2 { name="rdomains"; version="0.1.9"; sha256="0pfz438qiz8mqh391nlhz2q2r8830y5i0sg1ajhppj1hq2cgqqbg"; depends=[aws_alexa curl devtools glmnet httr jsonlite Matrix rlang urltools virustotal XML xml2]; broken = true; }; rijkspalette = derive2 { name="rijkspalette"; version="1.0.2"; sha256="00726q8s36si08ghd9sgi7ikadcj11xqwhgv8f3cml6lvwz7ppzz"; depends=[crayon imager jsonlite]; broken = true; }; seedwater = derive2 { name="seedwater"; version="2.0"; sha256="1q6q612245hqqx89jzlp77f73vj2baxi0bghd9l8kpjz4ydh6rv8"; depends=[rpanel]; broken = true; }; + semantic_dashboard = derive2 { name="semantic.dashboard"; version="0.2.0"; sha256="0i9l8s19bw5xj4dzq932j0lzldg725zwcxnnda9p8gp0fimkb3d2"; depends=[checkmate glue htmltools shiny shiny_semantic]; broken = true; }; + shiny_semantic = derive2 { name="shiny.semantic"; version="0.4.2"; sha256="0ndjp8c3c8kci8rzhj4bg1zpgwzcilgbjplx0sr2hii87lpi0v2j"; depends=[glue htmltools htmlwidgets jsonlite magrittr purrr R6 shiny]; broken = true; }; shinyypr = derive2 { name="shinyypr"; version="0.0.2"; sha256="1k6jsw6gnpwk90hkpa9grki0b68cab57vbd0h6ldjqr11giwcz8z"; depends=[bsplus chk dplyr DT ggplot2 lifecycle magrittr purrr readr shiny shinyjs waiter ypr]; broken = true; }; simLife = derive2 { name="simLife"; version="0.5.2"; sha256="1dhrjszfgxr0j4dkc2bwykyj515ji5rkb572nmnyjgkyi652j01v"; depends=[splancs]; broken = true; }; simba = derive2 { name="simba"; version="0.3-5"; sha256="14kqxqavacckl5s1518iiwzrmlgbxz1lxy33y8c9qq7xaln41g9h"; depends=[vegan]; broken = true; }; + sitree = derive2 { name="sitree"; version="0.1-10"; sha256="1sspbzzr0xdzgx2n4yvj1vih952wz17qzk4vkjwpifbl8xkafw6v"; depends=[data_table ggplot2]; broken = true; }; + sitreeE = derive2 { name="sitreeE"; version="0.0-7"; sha256="07x7p0rqkmjlf6lykx9ckh9dbwjqjkmszrhar1vmpy54i8gv3ha7"; depends=[data_table sitree]; broken = true; }; slga = derive2 { name="slga"; version="1.2.0"; sha256="0n96vqczpzc51ln2nraxz0846amasfbm541sy0wf0dsng283mh13"; depends=[httr raster s2 sf xml2]; broken = true; }; soilphysics = derive2 { name="soilphysics"; version="4.0"; sha256="0b4fkc1plmafjdlad7s4pvca6lafmrswwpfddvsh73734s7cslmq"; depends=[boot fields MASS shiny shinydashboard]; broken = true; }; + spANOVA = derive2 { name="spANOVA"; version="0.99.3"; sha256="0w817zwbk6amh3n3j8wzjr15qqhfbk9s23c77b27iwcc5akdgbix"; depends=[ape car DT geoR gtools knitr MASS Matrix multcomp multcompView mvtnorm rmarkdown ScottKnott shiny shinyBS shinycssloaders shinythemes spatialreg spdep xtable]; broken = true; }; + spate = derive2 { name="spate"; version="1.7"; sha256="1cr5jjrycfj9larsqgzfakk4qgfz8m5djg4ddzk6s3lg2iw06y43"; depends=[mvtnorm truncnorm]; broken = true; }; spsann = derive2 { name="spsann"; version="2.2.0"; sha256="00nlrwk50ch128brzvfxld0pcpq1syks9rvwdrcf1i2pcxnva7d0"; depends=[pedometrics Rcpp sp SpatialTools]; broken = true; }; - stplanr = derive2 { name="stplanr"; version="0.8.4"; sha256="0mkkaz47a3cfbi4jqm930j8dyg3y5j9njqp9za121arsyv0jp3zf"; depends=[curl data_table dplyr geosphere httr igraph jsonlite lwgeom magrittr maptools nabor pbapply raster Rcpp RcppArmadillo rgeos rlang sf sfheaders sp stringr]; broken = true; }; stratifyR = derive2 { name="stratifyR"; version="1.0-2"; sha256="10qlxkdbym206bvl2wc8ig00fvj1n7553vmjk6rs2n4p945qd47g"; depends=[actuar fitdistrplus mc2d triangle zipfR]; broken = true; }; supc = derive2 { name="supc"; version="0.2.5"; sha256="1qj7a1zcj3mf0a40anifjyq851yjksygrpj4vsf0dm4yfwl5viwx"; depends=[BH Rcpp]; broken = true; }; - swissparl = derive2 { name="swissparl"; version="0.2.1"; sha256="0181ls1gw68kfz3yqf8m2nwhah87i9m164rlbycy1kxq9adi93cs"; depends=[crayon dplyr ggplot2 httr jsonlite lubridate magrittr purrr stringr tibble tidyr]; broken = true; }; + survRatio = derive2 { name="survRatio"; version="0.1"; sha256="1xrqin3q3b7r8ga4i71ci97rsm4lj5ffd0720n7s563jkpnpyb9l"; depends=[ggplot2 ggpubr gridExtra survival]; broken = true; }; tabulizer = derive2 { name="tabulizer"; version="0.2.2"; sha256="0zd5cfqwgirqchw1mvziscxvzl8pb1y6rbfywkn9i9pxfydkm5vi"; depends=[png rJava tabulizerjars]; broken = true; }; tabulizerjars = derive2 { name="tabulizerjars"; version="1.0.1"; sha256="005n2gyzzmq8h0mpj8xs6ri6llzwag7nqzpm4vnzp81vwy8kmf92"; depends=[rJava]; broken = true; }; + text2sdg = derive2 { name="text2sdg"; version="0.1.0"; sha256="1a4ms4bha7h8mrbjzv5rb3s4gc1s5s22x5c97ss82r9pdb2ynvck"; depends=[corpustools dplyr ggplot2 magrittr stringr tibble tidyr]; broken = true; }; + txshift = derive2 { name="txshift"; version="0.3.6"; sha256="16ffkzgy9x1ng6338mb4flg3xy3cc32lrhqmb7rgpzs2fb0h20zr"; depends=[assertthat data_table ggplot2 hal9001 haldensify latex2exp lspline mvtnorm Rdpack scales stringr]; broken = true; }; unfoldr = derive2 { name="unfoldr"; version="0.7.1"; sha256="1khas7d04g4y2kwldnsja5xk1n5mys2s66pln3l0gqlsbk67na12"; depends=[]; broken = true; }; usethis2 = derive2 { name="usethis2"; version="0.2.0"; sha256="0ljvfgwg73y71yvyz2pp4c1rzgiqk1x7kmgswxa1ay05zwdgyi0x"; depends=[microservices purrr usethis withr]; broken = true; }; viewshed3d = derive2 { name="viewshed3d"; version="4.0.0"; sha256="039xx39w3k3hckf0qci7j1364s47vja5s18siqjh6c5yy1w8q737"; depends=[data_table hyper_fit lidR nabor pkgcond plotrix pracma raster rgl sp viridis]; broken = true; }; From f5cac4067c1e53a70fa8975371ad7c10ecec3359 Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Wed, 10 Nov 2021 07:22:10 +1100 Subject: [PATCH 005/278] rPackages: add maintainers to individual packages --- pkgs/development/r-modules/default.nix | 36 ++++++++++++++++++++++++-- 1 file changed, 34 insertions(+), 2 deletions(-) diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index c697384707ed..7d2e17c078e5 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -22,7 +22,8 @@ let doCheck ? true, requireX ? false, broken ? false, - hydraPlatforms ? R.meta.platforms + hydraPlatforms ? R.meta.platforms, + maintainers ? [] }: buildRPackage { name = "${name}-${version}"; src = fetchurl { @@ -36,6 +37,7 @@ let meta.platforms = R.meta.platforms; meta.hydraPlatforms = hydraPlatforms; meta.broken = broken; + meta.maintainers = maintainers; }); # Templates for generating Bioconductor and CRAN packages @@ -110,6 +112,26 @@ let }) ) overrides; + # Overrides package definitions with maintainers. + # For example, + # + # overrideMaintainers { + # foo = [ lib.maintainers.jsmith ] + # } old + # + # results in + # + # { + # foo = old.foo.override { + # maintainers = [ lib.maintainers.jsmith ]; + # }; + # } + overrideMaintainers = overrides: old: + lib.mapAttrs (name: value: + (builtins.getAttr name old).override { + maintainers = value; + }) overrides; + # Overrides package definitions with new R dependencies. # For example, # @@ -250,7 +272,8 @@ let old5 = old4 // (overrideNativeBuildInputs packagesWithNativeBuildInputs old4); old6 = old5 // (overrideBuildInputs packagesWithBuildInputs old5); old7 = old6 // (overrideBroken brokenPackages old6); - old = old7; + old8 = old7 // (overrideMaintainers packagesWithMaintainers old7); + old = old8; in old // (otherOverrides old new); # Recursive override pattern. @@ -266,6 +289,15 @@ let # tweaks for the individual packages and "in self" follow + packagesWithMaintainers = with lib.maintainers; { + data_table = [ jbedo ]; + BiocManager = [ jbedo ]; + ggplot2 = [ jbedo ]; + svaNUMT = [ jbedo ]; + svaRetro = [ jbedo ]; + StructuralVariantAnnotation = [ jbedo ]; + }; + packagesWithRDepends = { FactoMineR = [ self.car ]; pander = [ self.codetools ]; From 31eccf77fdab279cc9a023a51abbe267a389d1ab Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Mon, 15 Nov 2021 22:12:32 +1100 Subject: [PATCH 006/278] rPackages: CRAN and BioC update --- .../r-modules/bioc-annotation-packages.nix | 364 +++++------ .../r-modules/bioc-experiment-packages.nix | 120 ++-- pkgs/development/r-modules/bioc-packages.nix | 52 +- pkgs/development/r-modules/cran-packages.nix | 582 ++++++++++-------- 4 files changed, 587 insertions(+), 531 deletions(-) diff --git a/pkgs/development/r-modules/bioc-annotation-packages.nix b/pkgs/development/r-modules/bioc-annotation-packages.nix index 058456b56c70..dca3263dd41d 100644 --- a/pkgs/development/r-modules/bioc-annotation-packages.nix +++ b/pkgs/development/r-modules/bioc-annotation-packages.nix @@ -120,9 +120,9 @@ in with self; { BSgenome_Vvinifera_URGI_IGGP12Xv2 = derive2 { name="BSgenome.Vvinifera.URGI.IGGP12Xv2"; version="0.1"; sha256="1saavsi75gw33jphhm3qb5psyfrv850ss4cmqr4i7aw1kc0fvs1j"; depends=[BSgenome]; }; BSgenome_Vvinifera_URGI_IGGP8X = derive2 { name="BSgenome.Vvinifera.URGI.IGGP8X"; version="0.1"; sha256="0v0hi2pbbi5ynd92bvbv4bzr7bgv48kvyz62hdv7k9gh7s5pg0id"; depends=[BSgenome]; }; CTCF = derive2 { name="CTCF"; version="0.99.4"; sha256="1xp10ra53s59nznnxlgw115j46yg5sy13z6wmhqzv6y789s3p49k"; depends=[]; }; - ChemmineDrugs = derive2 { name="ChemmineDrugs"; version="1.0.2"; sha256="0l47ac6lkycmghra2cbcdcxcv47ari8xg6lxpzilvkf4n6ld6064"; depends=[BiocGenerics ChemmineR]; }; + ChemmineDrugs = derive2 { name="ChemmineDrugs"; version="1.0.2"; sha256="0l47ac6lkycmghra2cbcdcxcv47ari8xg6lxpzilvkf4n6ld6064"; depends=[BiocGenerics ChemmineR RSQLite]; }; DO_db = derive2 { name="DO.db"; version="2.9"; sha256="10bqqa124l61ivzy4mdd3z3ar9a6537qbxw23pc4y9w8a6dwnavn"; depends=[AnnotationDbi]; }; - ENCODExplorerData = derive2 { name="ENCODExplorerData"; version="0.99.5"; sha256="00gfm5l8pxrfs4cw4jlw6n0cz5s31isg69k833n89800v26w3kvh"; depends=[]; }; + ENCODExplorerData = derive2 { name="ENCODExplorerData"; version="0.99.5"; sha256="00gfm5l8pxrfs4cw4jlw6n0cz5s31isg69k833n89800v26w3kvh"; depends=[data_table jsonlite RCurl]; }; EnsDb_Hsapiens_v75 = derive2 { name="EnsDb.Hsapiens.v75"; version="2.99.0"; sha256="0jx6rf6v0j8yr07q3c1h7s121901dc400nm6xaiv4i7kb5czjn9c"; depends=[ensembldb]; }; EnsDb_Hsapiens_v79 = derive2 { name="EnsDb.Hsapiens.v79"; version="2.99.0"; sha256="0k94iml0417m3k086d0bzd83fndyb2kn7pimsfzcdmafgy6sxwgg"; depends=[ensembldb]; }; EnsDb_Hsapiens_v86 = derive2 { name="EnsDb.Hsapiens.v86"; version="2.99.0"; sha256="1gp7xrzddpvmh2vrcp571wyy00skxgxfl39ksj4h0hm1qay0fb2m"; depends=[ensembldb]; }; @@ -133,7 +133,7 @@ in with self; { EpiTxDb_Hs_hg38 = derive2 { name="EpiTxDb.Hs.hg38"; version="0.99.7"; sha256="1vsi24q902wqlnbxp8hks03x53n4yh5cmpyyxdvmxfbn1rxfvnyf"; depends=[AnnotationHub EpiTxDb]; }; EpiTxDb_Mm_mm10 = derive2 { name="EpiTxDb.Mm.mm10"; version="0.99.6"; sha256="16zsqnrb3ypwv0sqfmhqmkxqhp90k21in7bjhjf0zagywsyyhpww"; depends=[AnnotationHub EpiTxDb]; }; EpiTxDb_Sc_sacCer3 = derive2 { name="EpiTxDb.Sc.sacCer3"; version="0.99.5"; sha256="0qlifdpppxxn2xmb0f1ghjbx47a7rrkrzr2lvky5p8lb0dnh3zxv"; depends=[AnnotationHub EpiTxDb]; }; - EuPathDB = derive2 { name="EuPathDB"; version="1.0.1"; sha256="0k23f34hnvcf2ig9sic7gf7pypc2jmwymg605qym7x32bjhi6rlm"; depends=[AnnotationHub AnnotationHubData Biobase Biostrings GenomeInfoDbData GenomicRanges]; }; + EuPathDB = derive2 { name="EuPathDB"; version="1.0.1"; sha256="0k23f34hnvcf2ig9sic7gf7pypc2jmwymg605qym7x32bjhi6rlm"; depends=[AnnotationHub AnnotationHubData Biobase BiocManager Biostrings GenomeInfoDbData GenomicRanges]; }; FDb_FANTOM4_promoters_hg19 = derive2 { name="FDb.FANTOM4.promoters.hg19"; version="1.0.0"; sha256="04sn5x1r5fcbghzw6n1bvy0z8zyhrbk86wsqz1p5gk665vicz8rw"; depends=[AnnotationDbi Biostrings GenomicFeatures]; }; FDb_InfiniumMethylation_hg18 = derive2 { name="FDb.InfiniumMethylation.hg18"; version="2.2.0"; sha256="0vwzqzj49imjdsn8ssiwqi7qic7rqw5pbsiinyxgy7y10fn2i42a"; depends=[AnnotationDbi Biostrings GenomicFeatures org_Hs_eg_db TxDb_Hsapiens_UCSC_hg18_knownGene]; }; FDb_InfiniumMethylation_hg19 = derive2 { name="FDb.InfiniumMethylation.hg19"; version="2.2.0"; sha256="0gq90fvph6kgrpjb89nvzq6hl1k24swn19rgjh5g98l86mja6nk0"; depends=[AnnotationDbi Biostrings GenomicFeatures org_Hs_eg_db TxDb_Hsapiens_UCSC_hg19_knownGene]; }; @@ -192,11 +192,11 @@ in with self; { Norway981_db = derive2 { name="Norway981.db"; version="3.2.3"; sha256="04ngc2hilqi9m7933mnm7jcvkxlz68vqqh5b628db575vcxql9b9"; depends=[AnnotationDbi org_Hs_eg_db]; }; OperonHumanV3_db = derive2 { name="OperonHumanV3.db"; version="3.2.3"; sha256="082gff88cwk2p50q8g9bixggacaclgqcvk6w5dc11h9fkgvd160i"; depends=[AnnotationDbi org_Hs_eg_db]; }; Orthology_eg_db = derive2 { name="Orthology.eg.db"; version="3.14.0"; sha256="0irfwj52dm2dqw0y7fpp2i3xxma347cz8s75r73dklgs1ra5rp3r"; depends=[AnnotationDbi]; }; - PANTHER_db = derive2 { name="PANTHER.db"; version="1.0.11"; sha256="0ckhrbhcxf7lq1hz1lrkrb7djjsfy7m0abf3665aagk6vvzigxy8"; depends=[AnnotationDbi AnnotationHub BiocFileCache]; }; + PANTHER_db = derive2 { name="PANTHER.db"; version="1.0.11"; sha256="0ckhrbhcxf7lq1hz1lrkrb7djjsfy7m0abf3665aagk6vvzigxy8"; depends=[AnnotationDbi AnnotationHub BiocFileCache RSQLite]; }; PFAM_db = derive2 { name="PFAM.db"; version="3.14.0"; sha256="05nnjar0nljpmzz99hssmfm16y7lyy8vf6ncw823vyg8g5893h95"; depends=[AnnotationDbi]; }; POCRCannotation_db = derive2 { name="POCRCannotation.db"; version="3.2.3"; sha256="0ybvs4hrxpivdkhm0fxpib11vlxqqdk8prlyj78vj5qzyb3iy89d"; depends=[AnnotationDbi org_Hs_eg_db]; }; PartheenMetaData_db = derive2 { name="PartheenMetaData.db"; version="3.2.3"; sha256="0d37c5b7s3fgkkvg7sj7gl9ksrjk5pyyv54vkys8w3qwgsm8yrdz"; depends=[AnnotationDbi org_Hs_eg_db]; }; - PolyPhen_Hsapiens_dbSNP131 = derive2 { name="PolyPhen.Hsapiens.dbSNP131"; version="1.0.2"; sha256="1kikygkli41sn3rqihz0924prmqg2264ifj29vmg1a7qccm0kf7c"; depends=[AnnotationDbi VariantAnnotation]; }; + PolyPhen_Hsapiens_dbSNP131 = derive2 { name="PolyPhen.Hsapiens.dbSNP131"; version="1.0.2"; sha256="1kikygkli41sn3rqihz0924prmqg2264ifj29vmg1a7qccm0kf7c"; depends=[AnnotationDbi RSQLite VariantAnnotation]; }; RaExExonProbesetLocation = derive2 { name="RaExExonProbesetLocation"; version="1.15.0"; sha256="1vvcc5zlpgbnqak4y2xywyd82j3s61wvhhp2ap0nni14sdxrl3hd"; depends=[AnnotationDbi]; }; Rattus_norvegicus = derive2 { name="Rattus.norvegicus"; version="1.3.1"; sha256="0bpd7i5jvl2jvf822mhxankx7cqqr4l70xp4f7hcknxw3lxia2f1"; depends=[AnnotationDbi GenomicFeatures GO_db org_Rn_eg_db OrganismDbi TxDb_Rnorvegicus_UCSC_rn5_refGene]; }; RmiR_Hs_miRNA = derive2 { name="RmiR.Hs.miRNA"; version="1.0.7"; sha256="0pybw908mlfrskwhnhc0bfaaqw2z13kvr10apf68s74zs0ss57b4"; depends=[AnnotationDbi]; }; @@ -204,8 +204,8 @@ in with self; { RnAgilentDesign028282_db = derive2 { name="RnAgilentDesign028282.db"; version="3.2.3"; sha256="00qri74spbpym7krk1clx0kl429b1592afk5bfr3j8j3iw99g4af"; depends=[AnnotationDbi org_Rn_eg_db]; }; Roberts2005Annotation_db = derive2 { name="Roberts2005Annotation.db"; version="3.2.3"; sha256="1fc95c6x36n7zbr5ca680hyffxngma26gz0bdzylbw0w4mqmj6ga"; depends=[AnnotationDbi org_Hs_eg_db]; }; SHDZ_db = derive2 { name="SHDZ.db"; version="3.2.3"; sha256="077xy2zx3f4c01di18ki32xmrwgsc1qjci3wj33nmgsy5925zdxs"; depends=[AnnotationDbi org_Hs_eg_db]; }; - SIFT_Hsapiens_dbSNP132 = derive2 { name="SIFT.Hsapiens.dbSNP132"; version="1.0.2"; sha256="1akqhmv9hp41q2jrvz4xvpdi30c4c6v4xbz6ykn6pdf0217p7xry"; depends=[AnnotationDbi VariantAnnotation]; }; - SIFT_Hsapiens_dbSNP137 = derive2 { name="SIFT.Hsapiens.dbSNP137"; version="1.0.0"; sha256="1472abqanbwziyynr851xzhg7ck8w1n98ymmggg7s46hzix5mlj8"; depends=[AnnotationDbi VariantAnnotation]; }; + SIFT_Hsapiens_dbSNP132 = derive2 { name="SIFT.Hsapiens.dbSNP132"; version="1.0.2"; sha256="1akqhmv9hp41q2jrvz4xvpdi30c4c6v4xbz6ykn6pdf0217p7xry"; depends=[AnnotationDbi RSQLite VariantAnnotation]; }; + SIFT_Hsapiens_dbSNP137 = derive2 { name="SIFT.Hsapiens.dbSNP137"; version="1.0.0"; sha256="1472abqanbwziyynr851xzhg7ck8w1n98ymmggg7s46hzix5mlj8"; depends=[AnnotationDbi RSQLite VariantAnnotation]; }; SNPlocs_Hsapiens_dbSNP_20101109 = derive2 { name="SNPlocs.Hsapiens.dbSNP.20101109"; version="0.99.7"; sha256="1r1gvx563gv1lidi099yw7lvf8c0983yck9yf8r8iypiz1d4az73"; depends=[GenomicRanges IRanges S4Vectors]; }; SNPlocs_Hsapiens_dbSNP_20120608 = derive2 { name="SNPlocs.Hsapiens.dbSNP.20120608"; version="0.99.11"; sha256="0a1nyni8h3a7sq2sj5jfn3w6abkl5lwzbzhb8kg74v4359albcgm"; depends=[BSgenome GenomicRanges IRanges]; }; SNPlocs_Hsapiens_dbSNP141_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP141.GRCh38"; version="0.99.11"; sha256="1dl5gs9iqdvaplvggpngp37pzgbjaavw98qppv2cp65ih9rn0wc0"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; @@ -335,9 +335,9 @@ in with self; { genomewidesnp5Crlmm = derive2 { name="genomewidesnp5Crlmm"; version="1.0.6"; sha256="06dmwnjy3gb53y6nr02dmp22qzfl5d63wppazrabcqbzwimhnvp8"; depends=[]; }; genomewidesnp6Crlmm = derive2 { name="genomewidesnp6Crlmm"; version="1.0.7"; sha256="16qcxa32fmbdcv5dck0grsnqyfcqql7wpxa1l6andv9hrvabv2jx"; depends=[]; }; gp53cdf = derive2 { name="gp53cdf"; version="2.18.0"; sha256="11p69rxia8bqajix3jg34vnhczyxgpq50k5kdh878h7bn0mpg6bj"; depends=[AnnotationDbi]; }; - grasp2db = derive2 { name="grasp2db"; version="1.1.0"; sha256="1aq19myhcl9kdmzy8f4c3ilf0s0ng99rl58jja2xlmqsm2hik7ya"; depends=[AnnotationHub GenomeInfoDb]; }; + grasp2db = derive2 { name="grasp2db"; version="1.1.0"; sha256="1aq19myhcl9kdmzy8f4c3ilf0s0ng99rl58jja2xlmqsm2hik7ya"; depends=[AnnotationHub dbplyr digest dplyr GenomeInfoDb RSQLite]; }; greengenes13_5MgDb = derive2 { name="greengenes13.5MgDb"; version="2.0.0"; sha256="0j4pd653vlfpd9gq6gi459lra8xhyknjrzadkx9d3zjy0hcwpj7r"; depends=[]; }; - gwascatData = derive2 { name="gwascatData"; version="0.99.6"; sha256="1xhmzl06vivq8x01h60q3c4vql67wjgjfs35j4ifmixp1qhicgga"; depends=[]; }; + gwascatData = derive2 { name="gwascatData"; version="0.99.6"; sha256="1xhmzl06vivq8x01h60q3c4vql67wjgjfs35j4ifmixp1qhicgga"; depends=[data_table]; }; h10kcod_db = derive2 { name="h10kcod.db"; version="3.4.0"; sha256="0f30n339ib8q478a7axjdh8hzrqws762m680ha0sxm3a0nxwapgg"; depends=[AnnotationDbi org_Hs_eg_db]; }; h20kcod_db = derive2 { name="h20kcod.db"; version="3.4.0"; sha256="0csh59bgpn5xyaw6bfg7nvi9vcvjd4f66f0dr3xh7c6316835mnx"; depends=[AnnotationDbi org_Hs_eg_db]; }; hapmap370k = derive2 { name="hapmap370k"; version="1.0.1"; sha256="0n6rmrqcbl665a1l6jxk1gn6518x4gxadzy5dc9k9v01cbh3qzmw"; depends=[]; }; @@ -492,7 +492,7 @@ in with self; { illuminaRatv1_db = derive2 { name="illuminaRatv1.db"; version="1.26.0"; sha256="1krpp3pb3h2nrk5jrx54a3v6473qsjnz5wksysy8p4zpisvnxyfb"; depends=[AnnotationDbi org_Rn_eg_db]; }; indac_db = derive2 { name="indac.db"; version="3.2.3"; sha256="0jjkiyhjcjgk9888a96g5w80k8a652cww5dhidbdiq5d8gakbnji"; depends=[AnnotationDbi org_Dm_eg_db]; }; lumiHumanAll_db = derive2 { name="lumiHumanAll.db"; version="1.22.0"; sha256="0kn2m31b4q8r1lm4iwda9i62la4akj0c35pi3khbfvkmdrvbvhd2"; depends=[AnnotationDbi org_Hs_eg_db]; }; - lumiHumanIDMapping = derive2 { name="lumiHumanIDMapping"; version="1.10.1"; sha256="0j29cd01z840jg4zq0yczjsqnya1vpx6hajqdq96msiy4i5fj534"; depends=[AnnotationDbi lumi]; }; + lumiHumanIDMapping = derive2 { name="lumiHumanIDMapping"; version="1.10.1"; sha256="0j29cd01z840jg4zq0yczjsqnya1vpx6hajqdq96msiy4i5fj534"; depends=[AnnotationDbi DBI lumi]; }; lumiMouseAll_db = derive2 { name="lumiMouseAll.db"; version="1.22.0"; sha256="00iawk8wb1hnvmy898nl9hc85rfzzwi34lpnv2d37rw4wdn57z33"; depends=[AnnotationDbi org_Mm_eg_db]; }; lumiMouseIDMapping = derive2 { name="lumiMouseIDMapping"; version="1.10.0"; sha256="18mc7vwp2p53ns2paa4glj570shmbq9lk318g3p9nl09mxyadim9"; depends=[AnnotationDbi lumi]; }; lumiRatAll_db = derive2 { name="lumiRatAll.db"; version="1.22.0"; sha256="1yh0q8aw33xsn4phj04v0mhjn8xh3z06jrg7yfi9qz1c985z1gw6"; depends=[AnnotationDbi org_Rn_eg_db]; }; @@ -529,8 +529,8 @@ in with self; { mgug4121a_db = derive2 { name="mgug4121a.db"; version="3.2.3"; sha256="0947crjk8nj4bzgwz7anran7y2qhd1v8bp9f59ja3628rgjx6cz5"; depends=[AnnotationDbi org_Mm_eg_db]; }; mgug4122a_db = derive2 { name="mgug4122a.db"; version="3.2.3"; sha256="0x4mrjqd9wnppkp757f3azllbjiilxfds3cpbcrfsi07l8lf4mxx"; depends=[AnnotationDbi org_Mm_eg_db]; }; mi16cod_db = derive2 { name="mi16cod.db"; version="3.4.0"; sha256="1v64plvn173hdvjyy491qh2wd4mgbpwr27iq7lab9b3w1g3b1a82"; depends=[AnnotationDbi org_Mm_eg_db]; }; - miRBaseVersions_db = derive2 { name="miRBaseVersions.db"; version="1.1.0"; sha256="09n0309glsj53g6wainl5m0vwnlx71ija5zmlqd0cpbhdis5zihw"; depends=[AnnotationDbi]; }; - miRNAtap_db = derive2 { name="miRNAtap.db"; version="0.99.10"; sha256="1j4igmyb9f4fa0a72hkmq3f7xgvyv38wai3mds5sd6mfgfc3brs3"; depends=[AnnotationDbi miRNAtap]; }; + miRBaseVersions_db = derive2 { name="miRBaseVersions.db"; version="1.1.0"; sha256="09n0309glsj53g6wainl5m0vwnlx71ija5zmlqd0cpbhdis5zihw"; depends=[AnnotationDbi DBI gtools RSQLite]; }; + miRNAtap_db = derive2 { name="miRNAtap.db"; version="0.99.10"; sha256="1j4igmyb9f4fa0a72hkmq3f7xgvyv38wai3mds5sd6mfgfc3brs3"; depends=[AnnotationDbi DBI miRNAtap RSQLite]; }; mirbase_db = derive2 { name="mirbase.db"; version="1.2.0"; sha256="0l7ah1ia7q1h16av2v1qa9nqpr0604z5dlrq37kd0aiz8dcxyddk"; depends=[AnnotationDbi]; }; mirna102xgaincdf = derive2 { name="mirna102xgaincdf"; version="2.18.0"; sha256="03q71dq6b0plivj5bgpgx0pnqdwfgplakyk5ggj4w7kqwmr5k17i"; depends=[AnnotationDbi]; }; mirna10cdf = derive2 { name="mirna10cdf"; version="2.18.0"; sha256="146gc1dx071vawn29k2m31zpi3wdwykss4qh8znpmbp5qcja4hyb"; depends=[AnnotationDbi]; }; @@ -616,175 +616,175 @@ in with self; { org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.14.0"; sha256="1ysrc12kzhlf5d86bz9dv7prjcwh68mww18dgivfamzqsk0x6wir"; depends=[AnnotationDbi]; }; paeg1acdf = derive2 { name="paeg1acdf"; version="2.18.0"; sha256="127pgxxp5wp3hgmafbzdzsk4gqnllq1m1gcsfyzkvpkvmbn4aa9n"; depends=[AnnotationDbi]; }; paeg1aprobe = derive2 { name="paeg1aprobe"; version="2.18.0"; sha256="0hbyd402wf9nzy2g93nhnf2zsi9jvhgfk0llxlyfk0kqxs0y4byy"; depends=[AnnotationDbi]; }; - pd_081229_hg18_promoter_medip_hx1 = derive2 { name="pd.081229.hg18.promoter.medip.hx1"; version="0.99.4"; sha256="1h4925dmw0vfsnhllg55gswq3sxfmx9rcjzifdvgs9y27399psrr"; depends=[Biostrings IRanges oligo oligoClasses]; }; - pd_2006_07_18_hg18_refseq_promoter = derive2 { name="pd.2006.07.18.hg18.refseq.promoter"; version="1.8.1"; sha256="09593qkh3jqlgxlqrpl3gla3y1kcshnzlq6nf10xhlps0qdlskhx"; depends=[Biostrings IRanges oligo oligoClasses]; }; - pd_2006_07_18_mm8_refseq_promoter = derive2 { name="pd.2006.07.18.mm8.refseq.promoter"; version="0.99.3"; sha256="14cm7z1y7rsk5m2zazg27wvjabckb9ifwa1g091ckwn1jfaf7aqn"; depends=[Biostrings IRanges oligo oligoClasses]; }; - pd_2006_10_31_rn34_refseq_promoter = derive2 { name="pd.2006.10.31.rn34.refseq.promoter"; version="0.99.3"; sha256="0v0fa1hn5bwa15vg31dar2x0xfki0xby6qf5p1a0ivrx3pnvbsrl"; depends=[Biostrings IRanges oligo oligoClasses]; }; - pd_ag = derive2 { name="pd.ag"; version="3.12.0"; sha256="0kh7ridgihqpibazpxpf9y8qiznxm4nng39701abamadxb5r6qmq"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_aragene_1_0_st = derive2 { name="pd.aragene.1.0.st"; version="3.12.0"; sha256="0255bgsqz8fflnlnxw77wvv6rky46n3pcryk9yhw7nfx0cq19v4r"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_aragene_1_1_st = derive2 { name="pd.aragene.1.1.st"; version="3.12.0"; sha256="105qfxg8p9z0bzffm6zg16c5f6nnv5hddlpcxs0kp3daddap8h5s"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_ath1_121501 = derive2 { name="pd.ath1.121501"; version="3.12.0"; sha256="0j83s6402xrggnlnqjyphy577by9w1ncvf1az4immzaixdamaaxc"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_barley1 = derive2 { name="pd.barley1"; version="3.12.0"; sha256="0mha6w2zh7gi4y7ngkh84jaff50h8l9a0q9dwc8a00m5npkpkv4g"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_bovgene_1_0_st = derive2 { name="pd.bovgene.1.0.st"; version="3.12.0"; sha256="00ys19pdc7zgprfrhmk0pzfb5q96qy0vqxi2a6g28pxwf3367b30"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_bovgene_1_1_st = derive2 { name="pd.bovgene.1.1.st"; version="3.12.0"; sha256="0npjm9rpcwj5j8sh1mdr5j1fz7dbwrqvjh2jx69fpslry69i6daq"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_bovine = derive2 { name="pd.bovine"; version="3.12.0"; sha256="1g03za5jc8lz21wpx1h2rcxdwsx7ddmmnyflz46z35ginzy41g7h"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_bsubtilis = derive2 { name="pd.bsubtilis"; version="3.12.0"; sha256="07x4dss0zp3p315q38bi7xarycav2hr44x7jb1jx4dypr0jh98mh"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_cangene_1_0_st = derive2 { name="pd.cangene.1.0.st"; version="3.12.0"; sha256="0dcwy6gnlj51hkc2gsv6fdq02vczci4z37f3iy1n8zkvz5b4yw6c"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_cangene_1_1_st = derive2 { name="pd.cangene.1.1.st"; version="3.12.0"; sha256="0pgw1424rvg3k9m3z6ffiyfj91i930dx2slqd15bnvc9hrr75094"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_canine = derive2 { name="pd.canine"; version="3.12.0"; sha256="0xpisxv7c990w44gd5g2iwfzqi3618xa3mdps69z2j4bfrcm37vq"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_canine_2 = derive2 { name="pd.canine.2"; version="3.12.0"; sha256="1dx914yyq6ry88d6fipsxsvp41pgcgllznpwsqqm2xa99y85ka5y"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_celegans = derive2 { name="pd.celegans"; version="3.12.0"; sha256="08byc5xvnbfdlikv9118k52pk37br4k8hn86xypkrmbz67fzlzpd"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_charm_hg18_example = derive2 { name="pd.charm.hg18.example"; version="0.99.4"; sha256="0nqv3h4zp83vp7q49n956920x5hdfcbw4z3hlvmqx8dixbgr1jrg"; depends=[Biostrings IRanges oligo oligoClasses]; }; - pd_chicken = derive2 { name="pd.chicken"; version="3.12.0"; sha256="1alkhr297ar6iv7nrjxnlhmq3xvjzpl46mdckkbxw13w73vj6p32"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_chigene_1_0_st = derive2 { name="pd.chigene.1.0.st"; version="3.12.0"; sha256="0smfgx1brfla96ijsv3a3ljcn02kpbk6sczgp06dik3g0k54788h"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_chigene_1_1_st = derive2 { name="pd.chigene.1.1.st"; version="3.12.0"; sha256="013baf38h35fsxq0f32v00rizik8iq76jm1s8azkicv90bvw5g8k"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_chogene_2_0_st = derive2 { name="pd.chogene.2.0.st"; version="3.12.0"; sha256="0pljjz466y2aav9045qgr5hbrv7alyl3gw3br4a8knbijk6fbw15"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_chogene_2_1_st = derive2 { name="pd.chogene.2.1.st"; version="3.12.0"; sha256="0d9pslimh0w37yvvfgqljbr2z5arjn6kx0wnjhp19gcch44jvkr2"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_citrus = derive2 { name="pd.citrus"; version="3.12.0"; sha256="1792gsxdr24264n121zvspdq39ac3khaghv5j66rn2nzqds75qch"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_clariom_d_human = derive2 { name="pd.clariom.d.human"; version="3.14.1"; sha256="11q4s4q07fpkl5wpmhhjfkrp4l8i8gy1i8wc80aar84lp1261vvx"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_clariom_s_human = derive2 { name="pd.clariom.s.human"; version="3.14.1"; sha256="0a68mnwv735mi9k9qxs2vv4hnh76yg1n7jjyaw34g8m7405yjxxp"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_clariom_s_human_ht = derive2 { name="pd.clariom.s.human.ht"; version="3.14.1"; sha256="08fzm8xp6wa4x03vqb28dvlz3hiwv2q5n5h9m2np0g4g40hbhg89"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_clariom_s_mouse = derive2 { name="pd.clariom.s.mouse"; version="3.14.1"; sha256="15fc25840lnhv0rlxc98akda1gis1s4xn61ycvymjii3lgx8hwpk"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_clariom_s_mouse_ht = derive2 { name="pd.clariom.s.mouse.ht"; version="3.14.1"; sha256="1ka9mganvymml306yh196rqan333ykrmqp9dfl4xs9mz57p405kk"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_clariom_s_rat = derive2 { name="pd.clariom.s.rat"; version="3.14.1"; sha256="1bx0vipcw3vjpz59h5820yanwy7b8mxb8bkgwp3n58vm24x7l304"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_clariom_s_rat_ht = derive2 { name="pd.clariom.s.rat.ht"; version="3.14.1"; sha256="17fk4qiznh2ks7r4mzbv1gnpjca39n6rzshb5dw5n73rbnd24160"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_cotton = derive2 { name="pd.cotton"; version="3.12.0"; sha256="1h71klvndi32j7hb7cy2w6asf7lb1xhs5glxajnd30y7ksigba7l"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_cyngene_1_0_st = derive2 { name="pd.cyngene.1.0.st"; version="3.12.0"; sha256="1xkv8m346x1zrnp4bhbjk2xwfq5jkbprbh417bya8swqvcyv3zbj"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_cyngene_1_1_st = derive2 { name="pd.cyngene.1.1.st"; version="3.12.0"; sha256="1kicrk0n2lik32q9nkpfy8ydh8klsy6i5cy6m2grddv80g5hc6n4"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_cyrgene_1_0_st = derive2 { name="pd.cyrgene.1.0.st"; version="3.12.0"; sha256="1s7rrwcmaar230y90hhvrx3wxlp228j88pwdh2glap2pn3d3rlnd"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_cyrgene_1_1_st = derive2 { name="pd.cyrgene.1.1.st"; version="3.12.0"; sha256="0p7j8ygyx8f5aqyy847rfcc35hrkcavi1700af971jjrha3gllc0"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_cytogenetics_array = derive2 { name="pd.cytogenetics.array"; version="3.12.0"; sha256="0gd7q64zfxda9irdmmr92iqxlswaj5v4pklsfm96xkn8lxq34dlb"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_drogene_1_0_st = derive2 { name="pd.drogene.1.0.st"; version="3.12.0"; sha256="1zp85q3a2bayr0q5r0ij62kfypzngcz9v791xsf9n9k7nx6714fi"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_drogene_1_1_st = derive2 { name="pd.drogene.1.1.st"; version="3.12.0"; sha256="0yjxjzmcx2hh6rm15p9d36vfj77fwmd7q2kbjk8h7hbpkm72ssdf"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_drosgenome1 = derive2 { name="pd.drosgenome1"; version="3.12.0"; sha256="1cp3fs2g88yv50gkd6m769idlj7kci2g82wafn17ci65g64q0g05"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_drosophila_2 = derive2 { name="pd.drosophila.2"; version="3.12.0"; sha256="0rr3l6203nfzhz21wps7dfcifvzmbnixcr2piv5jdfh7birj23aa"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_e_coli_2 = derive2 { name="pd.e.coli.2"; version="3.12.0"; sha256="1nny0w0adg433n1i20q0jdmi5yy1anpa91dgrklpvxyxbr5902vz"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_ecoli = derive2 { name="pd.ecoli"; version="3.12.0"; sha256="0mi5i0cp5xz97pb3ic6qmwl3fp4byyddvas2npll4ngarl5wv5ag"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_ecoli_asv2 = derive2 { name="pd.ecoli.asv2"; version="3.12.0"; sha256="19pn7691cr0vakxlx0q0x3p1pfc0z8l5f14475bv2fr4djljhhma"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_elegene_1_0_st = derive2 { name="pd.elegene.1.0.st"; version="3.12.0"; sha256="1if8gwvvk9jybsrcwr8sayg1czchpnlmysa9plrm50g7r2ki7m4l"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_elegene_1_1_st = derive2 { name="pd.elegene.1.1.st"; version="3.12.0"; sha256="18v3n3ss3rl2ksvjg1jk1w0mprhhxra55znixfcd8ikqsrdfj2a2"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_equgene_1_0_st = derive2 { name="pd.equgene.1.0.st"; version="3.12.0"; sha256="01vcj6a6hm9j2fbhrz244sbig63j1jyxyg068q4hizpl9lpzaibd"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_equgene_1_1_st = derive2 { name="pd.equgene.1.1.st"; version="3.12.0"; sha256="0migyzmrgqvvnkl8w61qv26hj5kjy720q4ipamdn99z9s4r8cxrn"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_feinberg_hg18_me_hx1 = derive2 { name="pd.feinberg.hg18.me.hx1"; version="0.99.3"; sha256="1k50khs7mrp1qy9z0whm5drwv59m8zn7v0zxhv26bpvmwbrnlhfg"; depends=[Biostrings IRanges oligo oligoClasses]; }; - pd_feinberg_mm8_me_hx1 = derive2 { name="pd.feinberg.mm8.me.hx1"; version="0.99.3"; sha256="1xk4rmpxjh9mwijwglzlycg7bk2zk599fk7xbnk114rj216y2jsm"; depends=[Biostrings IRanges oligo oligoClasses]; }; - pd_felgene_1_0_st = derive2 { name="pd.felgene.1.0.st"; version="3.12.0"; sha256="1lf3lp3zjprfwni2nfdpkvj2j6y7hd7znmxqcgj46vccznc49hh6"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_felgene_1_1_st = derive2 { name="pd.felgene.1.1.st"; version="3.12.0"; sha256="027cgqxfgmlkx64y6nm9h36ji781fkrnnrdxblh8h4jwjd5n36rj"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_fingene_1_0_st = derive2 { name="pd.fingene.1.0.st"; version="3.12.0"; sha256="0l19h920cghw65nqbh79s1rwijqdl7k84km0iv1fgx0kxhh28xa0"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_fingene_1_1_st = derive2 { name="pd.fingene.1.1.st"; version="3.12.0"; sha256="1habbw9fvygailw73azfrvczgp6ap1az688vz8pklqq77vlqs1qz"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_genomewidesnp_5 = derive2 { name="pd.genomewidesnp.5"; version="3.14.1"; sha256="1kiqmcc07q2m7hkgqczqndk7frpwibpsi2c0ihr5av0vjrp118ak"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_genomewidesnp_6 = derive2 { name="pd.genomewidesnp.6"; version="3.14.1"; sha256="1f35nw987axlc5rsr97i7rwcy1dd8zjjj6jf4cg75y0la6rvhfw4"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_guigene_1_0_st = derive2 { name="pd.guigene.1.0.st"; version="3.12.0"; sha256="1rq5gbdm6k0shv82zy7vrqxahzffh1xikrd3a6d1ai67n129bv6f"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_guigene_1_1_st = derive2 { name="pd.guigene.1.1.st"; version="3.12.0"; sha256="0p53kkhaa4d6ib32sfnwvs363zir227dmzxp8yqma0z4kz0djdna"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_hc_g110 = derive2 { name="pd.hc.g110"; version="3.12.0"; sha256="014bb45m2pwwbz7aca6l6442188mkp5bsk46z7x18g0aa66p06hv"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_hg_focus = derive2 { name="pd.hg.focus"; version="3.12.0"; sha256="1qlkhxq76nb55c299g7x7x8wn8nx1mg4ra5b0faflsjirkh4b32s"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_hg_u133_plus_2 = derive2 { name="pd.hg.u133.plus.2"; version="3.12.0"; sha256="02ip0mf24lw818ij8xgk7cylb5q1059jwvbdd2aynqqwy2mg31h0"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_hg_u133a = derive2 { name="pd.hg.u133a"; version="3.12.0"; sha256="08bk5im2zkb1vif1i6bgfx068xcl5q5m0ac33zpscfdq4jashm7k"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_hg_u133a_2 = derive2 { name="pd.hg.u133a.2"; version="3.12.0"; sha256="1rlh62r5zmxllkc9izr6a4yr2n88flfz1rybwvi90yggc788chxy"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_hg_u133a_tag = derive2 { name="pd.hg.u133a.tag"; version="3.12.0"; sha256="1ndjzcydshh5f3cnrav91hi47bx92z6rqliiwirhx2cqk8bvz5yp"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_hg_u133b = derive2 { name="pd.hg.u133b"; version="3.12.0"; sha256="1mafh53bj6g30869pdyl59040m2crqqbfcbdpdxfpigxpqr3rb4c"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_hg_u219 = derive2 { name="pd.hg.u219"; version="3.12.0"; sha256="04kqvh5ilf83z2iwvfw7m8xsgjxy29vqayp1lgh38y48j0nn24dk"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_hg_u95a = derive2 { name="pd.hg.u95a"; version="3.12.0"; sha256="1c7d16im1xxs8v0ccn19klwv43qr6b4iw0k5hz9cl8m10jmyw49b"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_hg_u95av2 = derive2 { name="pd.hg.u95av2"; version="3.12.0"; sha256="1l3y2bhjk67jwxvxwn5rngzn5c2dzk4lk24cm74f6px845qw5sk7"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_hg_u95b = derive2 { name="pd.hg.u95b"; version="3.12.0"; sha256="0gyxh7nagya1hgh5vvwalxmhbqm9pii3l6h1mndvx2ib58msh49h"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_hg_u95c = derive2 { name="pd.hg.u95c"; version="3.12.0"; sha256="0p9yrwjw75r5dg3z0pl4yr04agjpqv9rz3in2faw3pqawdzndihq"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_hg_u95d = derive2 { name="pd.hg.u95d"; version="3.12.0"; sha256="0ygfx73b122b468zvr9lhw2vkr1aijasrazarqjqc8bjbfm4fybw"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_hg_u95e = derive2 { name="pd.hg.u95e"; version="3.12.0"; sha256="0cksi811m9fzjq5linlsarfswp3p7rdgks0js3chv91jr3v2z3a7"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_hg18_60mer_expr = derive2 { name="pd.hg18.60mer.expr"; version="3.12.0"; sha256="1lsfsgsj6gyv0q509d0axr6g2yv226zxqh8f2n1hw0kfxwl27bm8"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_ht_hg_u133_plus_pm = derive2 { name="pd.ht.hg.u133.plus.pm"; version="3.12.0"; sha256="1000f1d28yzc0kcdf380fkx3xlgla3kn4n9f2ddawzjb7igash92"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_ht_hg_u133a = derive2 { name="pd.ht.hg.u133a"; version="3.12.0"; sha256="14bnnxsn02mpyynn8bvl8c47id9l2wfakngbvpq4h5yjy689jm1c"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_ht_mg_430a = derive2 { name="pd.ht.mg.430a"; version="3.12.0"; sha256="10shsap47217p6zmb9fn86na7if965h45l2r787cisgyyn9n45mq"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_hta_2_0 = derive2 { name="pd.hta.2.0"; version="3.12.2"; sha256="004mm93wag59arzirws3cfqjv4whl8sbv558xxg7pj1ar026g4m3"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_hu6800 = derive2 { name="pd.hu6800"; version="3.12.0"; sha256="07dj0avpx53kwaab9s126pn844nal9kn3h288n1m0kihir2mrjmv"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_huex_1_0_st_v2 = derive2 { name="pd.huex.1.0.st.v2"; version="3.14.1"; sha256="1chlvjy1gvw5r8hfmkb34m3h7w2z4s5x9gsc50qbj84988k4gzga"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_hugene_1_0_st_v1 = derive2 { name="pd.hugene.1.0.st.v1"; version="3.14.1"; sha256="1ikd6h7wnyxm11j0had2wcsxfbfrwdfw9605bvvdgd63dlvdv5dk"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_hugene_1_1_st_v1 = derive2 { name="pd.hugene.1.1.st.v1"; version="3.14.1"; sha256="0bsvwr4h8j4niagnmf7d2jd714dqk4yzdhr664z6vpx6429s0rsw"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_hugene_2_0_st = derive2 { name="pd.hugene.2.0.st"; version="3.14.1"; sha256="02m5x9mrz4ca0w84ljmdpw7rnlzqbqdq0q5k4sg7izx99k5c8r59"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_hugene_2_1_st = derive2 { name="pd.hugene.2.1.st"; version="3.14.1"; sha256="07la78206cvilfm8l2fwrcyy3gpwnhn0p32ilv043ln9drka2r8h"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_maize = derive2 { name="pd.maize"; version="3.12.0"; sha256="02viqnqf02d75sbarxh1k76966yay5i6wwdx118s4c9nlr5q6aqg"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_mapping250k_nsp = derive2 { name="pd.mapping250k.nsp"; version="3.12.0"; sha256="10j8c18glhvg07zp6w84hlc6l3a3qkvcvfnq0blpjfdk3a2lndz7"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_mapping250k_sty = derive2 { name="pd.mapping250k.sty"; version="3.12.0"; sha256="1hpyijrkr6svxxhrdp6s4jjcvr44hhbrdhrzvnw5ywpykmbphryc"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_mapping50k_hind240 = derive2 { name="pd.mapping50k.hind240"; version="3.12.0"; sha256="1whpjdr4aql846cm8nzgs613pi12qdqfixhqcfv8wrqyks27kq6s"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_mapping50k_xba240 = derive2 { name="pd.mapping50k.xba240"; version="3.12.0"; sha256="1a1f3lh5ywhyjawdbj2fzban85c8jz70lfcv3pagd5piincjwxq8"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_margene_1_0_st = derive2 { name="pd.margene.1.0.st"; version="3.12.0"; sha256="1s4l57hw511cnzj197jvvzqs8ymfbf14khxcv4llg55prxnvvnfc"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_margene_1_1_st = derive2 { name="pd.margene.1.1.st"; version="3.12.0"; sha256="067jv9486win2kv563gr4vpc96lpl02zqd09cnma7ycd7l1nvj9s"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_medgene_1_0_st = derive2 { name="pd.medgene.1.0.st"; version="3.12.0"; sha256="0f5blbhlp160av6r37icjdq2lyrvip09r4yzxhfa2vlxpcm7i83m"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_medgene_1_1_st = derive2 { name="pd.medgene.1.1.st"; version="3.12.0"; sha256="1mlyv6qjcxj9q416pmjq36q0aqp5l47pkd557ayaqd7gm3ygikcq"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_medicago = derive2 { name="pd.medicago"; version="3.12.0"; sha256="1wm81jr9d04yiyg0alj197fjigcvjhz2kvh8j6jw9yaawppr0c5p"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_mg_u74a = derive2 { name="pd.mg.u74a"; version="3.12.0"; sha256="1jji6g49icsxyam9qx3mbaspg24q0hjavi0w75k99m2ckmllc47c"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_mg_u74av2 = derive2 { name="pd.mg.u74av2"; version="3.12.0"; sha256="08ym915fb26qbz2r9kzgf7znai4mc06lr59l1da0x02iaixagg32"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_mg_u74b = derive2 { name="pd.mg.u74b"; version="3.12.0"; sha256="0yav9ghdk8y12bsqam2r0p4q3r1yymfwrz1kdg0l7qfzw3mn141d"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_mg_u74bv2 = derive2 { name="pd.mg.u74bv2"; version="3.12.0"; sha256="0hxczlax8qnghp4f7d3ph2y5j3vz3k4iwl6lyw3sig51msl4q6sd"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_mg_u74c = derive2 { name="pd.mg.u74c"; version="3.12.0"; sha256="13sq8jmwlqrci87bnl313dyqzy6v141r3fqzh1frl1w66ilw9chm"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_mg_u74cv2 = derive2 { name="pd.mg.u74cv2"; version="3.12.0"; sha256="1s59s9ch1ynrmnsn5jl2b19phij4qamgcpfs3f5zhji6ip41lckj"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_mirna_1_0 = derive2 { name="pd.mirna.1.0"; version="3.12.0"; sha256="0klkmrljgvkqvdlm07c47bl0jppbzz95ikxabfi8b3ajv78k6gn1"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_mirna_2_0 = derive2 { name="pd.mirna.2.0"; version="3.12.0"; sha256="12ynrrr0jrc0kl6s4pkn9fv3r3bh6wsbrfyywb5bvxf71n75wnqy"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_mirna_3_0 = derive2 { name="pd.mirna.3.0"; version="3.12.0"; sha256="0awghps8nlisdj2anvs400dn1hwdi8iw6xlrw17qr70fznbihdsy"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_mirna_3_1 = derive2 { name="pd.mirna.3.1"; version="3.8.1"; sha256="0g8fjwhxmps1w5f7lvnv258qn2ipggs1ar4r810amqqxd0yd5ah2"; depends=[Biostrings IRanges oligo oligoClasses]; }; - pd_mirna_4_0 = derive2 { name="pd.mirna.4.0"; version="3.12.0"; sha256="000gqhcvlpydrpr61853q22x8gvzmlf1kp7w98lll5g1vvwkw1ad"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_moe430a = derive2 { name="pd.moe430a"; version="3.12.0"; sha256="15qys3pm8nwkr385y8mj976k16as8r65lmzykm8cy0skl071i8wb"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_moe430b = derive2 { name="pd.moe430b"; version="3.12.0"; sha256="1xas3ld65xp2g1cfkd1n4v3yvx3g0g221c3ag550k552v0alfbyd"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_moex_1_0_st_v1 = derive2 { name="pd.moex.1.0.st.v1"; version="3.14.1"; sha256="13bqzbyqngbhj7yji568cc36fq0zw0bjaglfp2n9nnhdddd8b62x"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_mogene_1_0_st_v1 = derive2 { name="pd.mogene.1.0.st.v1"; version="3.14.1"; sha256="1hmb8kf91jd9q6b4pxiwlaj6ajzmkv1c3xsszyps5cwv13pgdjix"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_mogene_1_1_st_v1 = derive2 { name="pd.mogene.1.1.st.v1"; version="3.14.1"; sha256="13s7r8g29y56qbj2xm81r5kj65y2qcp5d24bakbhfcvz60wzljqf"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_mogene_2_0_st = derive2 { name="pd.mogene.2.0.st"; version="3.14.1"; sha256="0205jk6x8r35bmma771q6km631jlppm4y72zy85bv87dv4adxci8"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_mogene_2_1_st = derive2 { name="pd.mogene.2.1.st"; version="3.14.1"; sha256="14qwcq6yyy2ayrqv8kr33chlpgw3vkgq8iwb3yycsh3x3wz40jb8"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_mouse430_2 = derive2 { name="pd.mouse430.2"; version="3.12.0"; sha256="1ix7vkjy175cxbsbs67z38dhszxjik6370j0jkfpcknms6bh1db3"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_mouse430a_2 = derive2 { name="pd.mouse430a.2"; version="3.12.0"; sha256="11ywfshqxjmwf9q4sj97zv3ylynfkswcfaqglj883p4719lhxmc3"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_mta_1_0 = derive2 { name="pd.mta.1.0"; version="3.12.0"; sha256="07vznamds5lc1xnpv7kjwcrsd5zq0ap4gk8a85xqb93fmcc9ypqi"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_mu11ksuba = derive2 { name="pd.mu11ksuba"; version="3.12.0"; sha256="10fkys7y5b5frdrjqw3x2gqzp51lgg29nw6gxz25yi5fznc3nnv2"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_mu11ksubb = derive2 { name="pd.mu11ksubb"; version="3.12.0"; sha256="08734j3asq56v090zi0gzk3ryycjm78dfbb0xqmpr7ggqys96qp9"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_nugo_hs1a520180 = derive2 { name="pd.nugo.hs1a520180"; version="3.4.0"; sha256="1qc87zrrccld1hdqmrk1if98c6jq343gzlmib40wvshmrijp3sk3"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_nugo_mm1a520177 = derive2 { name="pd.nugo.mm1a520177"; version="3.4.0"; sha256="0568zvxc11w2i32wimhmi4271jbmpn97kb0vn4ns20hfg4h63m99"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_ovigene_1_0_st = derive2 { name="pd.ovigene.1.0.st"; version="3.12.0"; sha256="0vga20rb0v4yzd28szsppbgfhmn6ky85qrjj9llvacnlj1riwxsi"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_ovigene_1_1_st = derive2 { name="pd.ovigene.1.1.st"; version="3.12.0"; sha256="1vzrizvk1dbj6ngjxv9wpbm89q5mr8dkfhr0azrczs54c92xy48r"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_pae_g1a = derive2 { name="pd.pae.g1a"; version="3.12.0"; sha256="0b0bmzfrh7lm2i5d66z24iz0d5zj3qhw89aw011yssks7sr9lq90"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_plasmodium_anopheles = derive2 { name="pd.plasmodium.anopheles"; version="3.12.0"; sha256="0njd97jkg4hxd0jyq03227i00gmy0ccxznzqmp0mjqmkkhljn7nm"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_poplar = derive2 { name="pd.poplar"; version="3.12.0"; sha256="0j5xmf5hqvbb8ylsrvih92vxn1c1lah3mkffn64fji2lgqy9vjp9"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_porcine = derive2 { name="pd.porcine"; version="3.12.0"; sha256="0zx2gz90hhalaas3sf2rh8wcapjwmnckr0gq1r8p572chwf2rb81"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_porgene_1_0_st = derive2 { name="pd.porgene.1.0.st"; version="3.12.0"; sha256="1jiajzn31yjzs942w3i4cjqlpq81rkbryk961fqb9jpwldzg1pmy"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_porgene_1_1_st = derive2 { name="pd.porgene.1.1.st"; version="3.12.0"; sha256="038zwlckx58bw4x5naspfnvk4jcyc2g9bijrh1wd4m4k5mr1i4dk"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_rabgene_1_0_st = derive2 { name="pd.rabgene.1.0.st"; version="3.12.0"; sha256="0vwxzwgwh1a0fpyqsc3mnagin67wf2jmymm9kwhcnxargpmslm7k"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_rabgene_1_1_st = derive2 { name="pd.rabgene.1.1.st"; version="3.12.0"; sha256="0qs3ka3pdlrpqh66zb62jdfm2y6p2wyn6rcp7gb5qw0s8q9h170a"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_rae230a = derive2 { name="pd.rae230a"; version="3.12.0"; sha256="14kb35pcgxh2hmpzyqp9c2xirs0p6y5dvc3h2n568jmmdd14s7j5"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_rae230b = derive2 { name="pd.rae230b"; version="3.12.0"; sha256="1db6bm6qyrzwwa2scyw6qg7qcdqq97s5vy8kv0fnqc604b1jdzzq"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_raex_1_0_st_v1 = derive2 { name="pd.raex.1.0.st.v1"; version="3.14.1"; sha256="11sxhhpb4fy7wh5k7yxwwv141xgn4r1yshx097wicpa6561ffdkc"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_ragene_1_0_st_v1 = derive2 { name="pd.ragene.1.0.st.v1"; version="3.14.1"; sha256="0afnv1f5xvdh1vdsdfi5k1zscqzpdbf4b399wib3c8dg9vslccgx"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_ragene_1_1_st_v1 = derive2 { name="pd.ragene.1.1.st.v1"; version="3.14.1"; sha256="1krygwjhqs97gyh94xfbsfd8gg285fg5bgm7rqk7wlwp8fxx8xnn"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_ragene_2_0_st = derive2 { name="pd.ragene.2.0.st"; version="3.14.1"; sha256="1rq4ivv107853pyr4jrnbms4fgfzddndibrasgql9d4msca0sbz9"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_ragene_2_1_st = derive2 { name="pd.ragene.2.1.st"; version="3.14.1"; sha256="1k9zqhnck7fgp6g0b8vmasqjvdyqshzs567rz8qabw6jk5ifssvz"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_rat230_2 = derive2 { name="pd.rat230.2"; version="3.12.0"; sha256="0ysn0qi26b3llqs312an0mlgyahf4pgmixlcq2x2n925drns34gg"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_rcngene_1_0_st = derive2 { name="pd.rcngene.1.0.st"; version="3.12.0"; sha256="0hrhvy6dbw8g1h9qgm9frpmfp45pd5h0fnbvbvz94l98a5gda7xx"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_rcngene_1_1_st = derive2 { name="pd.rcngene.1.1.st"; version="3.12.0"; sha256="1lyizr096x5idasvlivl3lb67g7n2xvblrk5zfxglaf2fgpbrgwn"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_rg_u34a = derive2 { name="pd.rg.u34a"; version="3.12.0"; sha256="18jl5w1say8zyp50iqmd6jiw8ffa7qsk6sw7h7cw0j1g90ssf4y3"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_rg_u34b = derive2 { name="pd.rg.u34b"; version="3.12.0"; sha256="19v2g9lvadvba2dy0c0qn6j8qnsds2xa4cliiq12byad21833ss0"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_rg_u34c = derive2 { name="pd.rg.u34c"; version="3.12.0"; sha256="10j3hcszx637dfd55552b75qni0yryrjk8q6p0wkd5dh6p628qrx"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_rhegene_1_0_st = derive2 { name="pd.rhegene.1.0.st"; version="3.12.0"; sha256="1mx221xvxr4ng01ibq1pc472bn5rknfv3sjsbvvfmvqgpwk6z079"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_rhegene_1_1_st = derive2 { name="pd.rhegene.1.1.st"; version="3.12.0"; sha256="0f400qal4qmkxv705n5bzz07rkrz5zgs7swk8xp4pyp161fgb171"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_rhesus = derive2 { name="pd.rhesus"; version="3.12.0"; sha256="1zrpq7ppl2gaiprvz4sm0zsxqcw2nvn6qzwi3b0cimqf7r2091dd"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_rice = derive2 { name="pd.rice"; version="3.12.0"; sha256="0fmd505vianfspb1s5glr6aacnz45dq9skbk1qwm0a9ck6a6paav"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_rjpgene_1_0_st = derive2 { name="pd.rjpgene.1.0.st"; version="3.12.0"; sha256="18qj6sdjw17553lwcb3swdx0aiv54izdzzblgl88g90ijny8rbpa"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_rjpgene_1_1_st = derive2 { name="pd.rjpgene.1.1.st"; version="3.12.0"; sha256="0i99fyf6ya13z4hfjf3f5ssvys8wjhmwk894zy0p59p7nmphigyc"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_rn_u34 = derive2 { name="pd.rn.u34"; version="3.12.0"; sha256="0ayp6r7z7p61b1lfq9dkq4ips4apgjg6igrcnvsivlfhcfcfs0wf"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_rta_1_0 = derive2 { name="pd.rta.1.0"; version="3.12.2"; sha256="0x3j1a47lxhlqnhfvh1cii11rd433x16i6xmydwq2dkvm4xgd63h"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_rusgene_1_0_st = derive2 { name="pd.rusgene.1.0.st"; version="3.12.0"; sha256="1ik28yykkpdclr5hrv8lzafzfivakwvzgz49q7bpb1g6ihwylshw"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_rusgene_1_1_st = derive2 { name="pd.rusgene.1.1.st"; version="3.12.0"; sha256="090lxwxzj39d6qzlr7c3x50zf98g8x987rv1gdn0gcas15imya6n"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_s_aureus = derive2 { name="pd.s.aureus"; version="3.12.0"; sha256="0kszw94ymxgwd3midzkpl307ch3pyr4g5qjcf4s2jsq6mrvxw666"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_soybean = derive2 { name="pd.soybean"; version="3.12.0"; sha256="0xg90m7k1x9sgmhcp1qdwhxsyr2y5g28p7a4z6gd6mng2l7cgyh0"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_soygene_1_0_st = derive2 { name="pd.soygene.1.0.st"; version="3.12.0"; sha256="1hg90pma4ikdgxpw1f5mkjcw7na4mmjbhpr06dcssjl3bvmd4yxc"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_soygene_1_1_st = derive2 { name="pd.soygene.1.1.st"; version="3.12.0"; sha256="0978vbl59afgrzy0cmwq4mhsdz5rn5d929nz90fvczm6q8g24616"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_sugar_cane = derive2 { name="pd.sugar.cane"; version="3.12.0"; sha256="09m8m99l9mrhs4gr1rb02l54k8i2wgdzz88qlbpl4xmrfnfn99h6"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_tomato = derive2 { name="pd.tomato"; version="3.12.0"; sha256="12jn8i691j3kkgwa771f4kffzfcxv19vi0waw13akch7x7cc09q7"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_u133_x3p = derive2 { name="pd.u133.x3p"; version="3.12.0"; sha256="171rv9syn90k70ivaj8c48s827c08nycpyyc2b76jy405kaqb1gl"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_vitis_vinifera = derive2 { name="pd.vitis.vinifera"; version="3.12.0"; sha256="19r2k7wx3kygw6syqph24glw0b273gpi0z0y8n4bnd3a184g6hxz"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_wheat = derive2 { name="pd.wheat"; version="3.12.0"; sha256="12n8k5ah8fncbrb2hrpi2ah29fj5rxnh5j5zk8lfwhijg2zf52ra"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_x_laevis_2 = derive2 { name="pd.x.laevis.2"; version="3.12.0"; sha256="0zf3rc8rz05hzga2g5b8khszz6sr29dlp8z1jyn94ial284d0fn3"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_x_tropicalis = derive2 { name="pd.x.tropicalis"; version="3.12.0"; sha256="1pb6jm14k0g4z9vffi3clyh7rwc11c89hinb2amczg4xfm5lqrdr"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_xenopus_laevis = derive2 { name="pd.xenopus.laevis"; version="3.12.0"; sha256="1fxd95ak5s2dw16prxdwk20hisss32nywy9dc7y72bpqrv0v309y"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_yeast_2 = derive2 { name="pd.yeast.2"; version="3.12.0"; sha256="0l6sxg79xmlb7gdxx4bx24l35jgx5y2qfp3pxzcmdnd7c7qy6z5j"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_yg_s98 = derive2 { name="pd.yg.s98"; version="3.12.0"; sha256="1krx7kkjlyc41739c349z0sdbslp19iqfai0xzy6f4jk15524vhj"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_zebgene_1_0_st = derive2 { name="pd.zebgene.1.0.st"; version="3.12.0"; sha256="1vywph8shn23k0s8jmvx34rj34y1zxgwcssjnzbipm71f2sa15hw"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_zebgene_1_1_st = derive2 { name="pd.zebgene.1.1.st"; version="3.12.0"; sha256="0xs3kx7l78dfqkasgz8n5s8qjia5qhdcnj1l8al0ivy8mwvlpyxs"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; - pd_zebrafish = derive2 { name="pd.zebrafish"; version="3.12.0"; sha256="0gg7y7w51pv0vf39qzyaf09wl3vxy222nr69zgxg7cylwxmaky7v"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_081229_hg18_promoter_medip_hx1 = derive2 { name="pd.081229.hg18.promoter.medip.hx1"; version="0.99.4"; sha256="1h4925dmw0vfsnhllg55gswq3sxfmx9rcjzifdvgs9y27399psrr"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; }; + pd_2006_07_18_hg18_refseq_promoter = derive2 { name="pd.2006.07.18.hg18.refseq.promoter"; version="1.8.1"; sha256="09593qkh3jqlgxlqrpl3gla3y1kcshnzlq6nf10xhlps0qdlskhx"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; }; + pd_2006_07_18_mm8_refseq_promoter = derive2 { name="pd.2006.07.18.mm8.refseq.promoter"; version="0.99.3"; sha256="14cm7z1y7rsk5m2zazg27wvjabckb9ifwa1g091ckwn1jfaf7aqn"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; }; + pd_2006_10_31_rn34_refseq_promoter = derive2 { name="pd.2006.10.31.rn34.refseq.promoter"; version="0.99.3"; sha256="0v0fa1hn5bwa15vg31dar2x0xfki0xby6qf5p1a0ivrx3pnvbsrl"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; }; + pd_ag = derive2 { name="pd.ag"; version="3.12.0"; sha256="0kh7ridgihqpibazpxpf9y8qiznxm4nng39701abamadxb5r6qmq"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_aragene_1_0_st = derive2 { name="pd.aragene.1.0.st"; version="3.12.0"; sha256="0255bgsqz8fflnlnxw77wvv6rky46n3pcryk9yhw7nfx0cq19v4r"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_aragene_1_1_st = derive2 { name="pd.aragene.1.1.st"; version="3.12.0"; sha256="105qfxg8p9z0bzffm6zg16c5f6nnv5hddlpcxs0kp3daddap8h5s"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_ath1_121501 = derive2 { name="pd.ath1.121501"; version="3.12.0"; sha256="0j83s6402xrggnlnqjyphy577by9w1ncvf1az4immzaixdamaaxc"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_barley1 = derive2 { name="pd.barley1"; version="3.12.0"; sha256="0mha6w2zh7gi4y7ngkh84jaff50h8l9a0q9dwc8a00m5npkpkv4g"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_bovgene_1_0_st = derive2 { name="pd.bovgene.1.0.st"; version="3.12.0"; sha256="00ys19pdc7zgprfrhmk0pzfb5q96qy0vqxi2a6g28pxwf3367b30"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_bovgene_1_1_st = derive2 { name="pd.bovgene.1.1.st"; version="3.12.0"; sha256="0npjm9rpcwj5j8sh1mdr5j1fz7dbwrqvjh2jx69fpslry69i6daq"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_bovine = derive2 { name="pd.bovine"; version="3.12.0"; sha256="1g03za5jc8lz21wpx1h2rcxdwsx7ddmmnyflz46z35ginzy41g7h"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_bsubtilis = derive2 { name="pd.bsubtilis"; version="3.12.0"; sha256="07x4dss0zp3p315q38bi7xarycav2hr44x7jb1jx4dypr0jh98mh"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_cangene_1_0_st = derive2 { name="pd.cangene.1.0.st"; version="3.12.0"; sha256="0dcwy6gnlj51hkc2gsv6fdq02vczci4z37f3iy1n8zkvz5b4yw6c"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_cangene_1_1_st = derive2 { name="pd.cangene.1.1.st"; version="3.12.0"; sha256="0pgw1424rvg3k9m3z6ffiyfj91i930dx2slqd15bnvc9hrr75094"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_canine = derive2 { name="pd.canine"; version="3.12.0"; sha256="0xpisxv7c990w44gd5g2iwfzqi3618xa3mdps69z2j4bfrcm37vq"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_canine_2 = derive2 { name="pd.canine.2"; version="3.12.0"; sha256="1dx914yyq6ry88d6fipsxsvp41pgcgllznpwsqqm2xa99y85ka5y"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_celegans = derive2 { name="pd.celegans"; version="3.12.0"; sha256="08byc5xvnbfdlikv9118k52pk37br4k8hn86xypkrmbz67fzlzpd"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_charm_hg18_example = derive2 { name="pd.charm.hg18.example"; version="0.99.4"; sha256="0nqv3h4zp83vp7q49n956920x5hdfcbw4z3hlvmqx8dixbgr1jrg"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; }; + pd_chicken = derive2 { name="pd.chicken"; version="3.12.0"; sha256="1alkhr297ar6iv7nrjxnlhmq3xvjzpl46mdckkbxw13w73vj6p32"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_chigene_1_0_st = derive2 { name="pd.chigene.1.0.st"; version="3.12.0"; sha256="0smfgx1brfla96ijsv3a3ljcn02kpbk6sczgp06dik3g0k54788h"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_chigene_1_1_st = derive2 { name="pd.chigene.1.1.st"; version="3.12.0"; sha256="013baf38h35fsxq0f32v00rizik8iq76jm1s8azkicv90bvw5g8k"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_chogene_2_0_st = derive2 { name="pd.chogene.2.0.st"; version="3.12.0"; sha256="0pljjz466y2aav9045qgr5hbrv7alyl3gw3br4a8knbijk6fbw15"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_chogene_2_1_st = derive2 { name="pd.chogene.2.1.st"; version="3.12.0"; sha256="0d9pslimh0w37yvvfgqljbr2z5arjn6kx0wnjhp19gcch44jvkr2"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_citrus = derive2 { name="pd.citrus"; version="3.12.0"; sha256="1792gsxdr24264n121zvspdq39ac3khaghv5j66rn2nzqds75qch"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_clariom_d_human = derive2 { name="pd.clariom.d.human"; version="3.14.1"; sha256="11q4s4q07fpkl5wpmhhjfkrp4l8i8gy1i8wc80aar84lp1261vvx"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_clariom_s_human = derive2 { name="pd.clariom.s.human"; version="3.14.1"; sha256="0a68mnwv735mi9k9qxs2vv4hnh76yg1n7jjyaw34g8m7405yjxxp"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_clariom_s_human_ht = derive2 { name="pd.clariom.s.human.ht"; version="3.14.1"; sha256="08fzm8xp6wa4x03vqb28dvlz3hiwv2q5n5h9m2np0g4g40hbhg89"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_clariom_s_mouse = derive2 { name="pd.clariom.s.mouse"; version="3.14.1"; sha256="15fc25840lnhv0rlxc98akda1gis1s4xn61ycvymjii3lgx8hwpk"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_clariom_s_mouse_ht = derive2 { name="pd.clariom.s.mouse.ht"; version="3.14.1"; sha256="1ka9mganvymml306yh196rqan333ykrmqp9dfl4xs9mz57p405kk"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_clariom_s_rat = derive2 { name="pd.clariom.s.rat"; version="3.14.1"; sha256="1bx0vipcw3vjpz59h5820yanwy7b8mxb8bkgwp3n58vm24x7l304"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_clariom_s_rat_ht = derive2 { name="pd.clariom.s.rat.ht"; version="3.14.1"; sha256="17fk4qiznh2ks7r4mzbv1gnpjca39n6rzshb5dw5n73rbnd24160"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_cotton = derive2 { name="pd.cotton"; version="3.12.0"; sha256="1h71klvndi32j7hb7cy2w6asf7lb1xhs5glxajnd30y7ksigba7l"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_cyngene_1_0_st = derive2 { name="pd.cyngene.1.0.st"; version="3.12.0"; sha256="1xkv8m346x1zrnp4bhbjk2xwfq5jkbprbh417bya8swqvcyv3zbj"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_cyngene_1_1_st = derive2 { name="pd.cyngene.1.1.st"; version="3.12.0"; sha256="1kicrk0n2lik32q9nkpfy8ydh8klsy6i5cy6m2grddv80g5hc6n4"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_cyrgene_1_0_st = derive2 { name="pd.cyrgene.1.0.st"; version="3.12.0"; sha256="1s7rrwcmaar230y90hhvrx3wxlp228j88pwdh2glap2pn3d3rlnd"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_cyrgene_1_1_st = derive2 { name="pd.cyrgene.1.1.st"; version="3.12.0"; sha256="0p7j8ygyx8f5aqyy847rfcc35hrkcavi1700af971jjrha3gllc0"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_cytogenetics_array = derive2 { name="pd.cytogenetics.array"; version="3.12.0"; sha256="0gd7q64zfxda9irdmmr92iqxlswaj5v4pklsfm96xkn8lxq34dlb"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_drogene_1_0_st = derive2 { name="pd.drogene.1.0.st"; version="3.12.0"; sha256="1zp85q3a2bayr0q5r0ij62kfypzngcz9v791xsf9n9k7nx6714fi"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_drogene_1_1_st = derive2 { name="pd.drogene.1.1.st"; version="3.12.0"; sha256="0yjxjzmcx2hh6rm15p9d36vfj77fwmd7q2kbjk8h7hbpkm72ssdf"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_drosgenome1 = derive2 { name="pd.drosgenome1"; version="3.12.0"; sha256="1cp3fs2g88yv50gkd6m769idlj7kci2g82wafn17ci65g64q0g05"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_drosophila_2 = derive2 { name="pd.drosophila.2"; version="3.12.0"; sha256="0rr3l6203nfzhz21wps7dfcifvzmbnixcr2piv5jdfh7birj23aa"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_e_coli_2 = derive2 { name="pd.e.coli.2"; version="3.12.0"; sha256="1nny0w0adg433n1i20q0jdmi5yy1anpa91dgrklpvxyxbr5902vz"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_ecoli = derive2 { name="pd.ecoli"; version="3.12.0"; sha256="0mi5i0cp5xz97pb3ic6qmwl3fp4byyddvas2npll4ngarl5wv5ag"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_ecoli_asv2 = derive2 { name="pd.ecoli.asv2"; version="3.12.0"; sha256="19pn7691cr0vakxlx0q0x3p1pfc0z8l5f14475bv2fr4djljhhma"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_elegene_1_0_st = derive2 { name="pd.elegene.1.0.st"; version="3.12.0"; sha256="1if8gwvvk9jybsrcwr8sayg1czchpnlmysa9plrm50g7r2ki7m4l"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_elegene_1_1_st = derive2 { name="pd.elegene.1.1.st"; version="3.12.0"; sha256="18v3n3ss3rl2ksvjg1jk1w0mprhhxra55znixfcd8ikqsrdfj2a2"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_equgene_1_0_st = derive2 { name="pd.equgene.1.0.st"; version="3.12.0"; sha256="01vcj6a6hm9j2fbhrz244sbig63j1jyxyg068q4hizpl9lpzaibd"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_equgene_1_1_st = derive2 { name="pd.equgene.1.1.st"; version="3.12.0"; sha256="0migyzmrgqvvnkl8w61qv26hj5kjy720q4ipamdn99z9s4r8cxrn"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_feinberg_hg18_me_hx1 = derive2 { name="pd.feinberg.hg18.me.hx1"; version="0.99.3"; sha256="1k50khs7mrp1qy9z0whm5drwv59m8zn7v0zxhv26bpvmwbrnlhfg"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; }; + pd_feinberg_mm8_me_hx1 = derive2 { name="pd.feinberg.mm8.me.hx1"; version="0.99.3"; sha256="1xk4rmpxjh9mwijwglzlycg7bk2zk599fk7xbnk114rj216y2jsm"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; }; + pd_felgene_1_0_st = derive2 { name="pd.felgene.1.0.st"; version="3.12.0"; sha256="1lf3lp3zjprfwni2nfdpkvj2j6y7hd7znmxqcgj46vccznc49hh6"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_felgene_1_1_st = derive2 { name="pd.felgene.1.1.st"; version="3.12.0"; sha256="027cgqxfgmlkx64y6nm9h36ji781fkrnnrdxblh8h4jwjd5n36rj"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_fingene_1_0_st = derive2 { name="pd.fingene.1.0.st"; version="3.12.0"; sha256="0l19h920cghw65nqbh79s1rwijqdl7k84km0iv1fgx0kxhh28xa0"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_fingene_1_1_st = derive2 { name="pd.fingene.1.1.st"; version="3.12.0"; sha256="1habbw9fvygailw73azfrvczgp6ap1az688vz8pklqq77vlqs1qz"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_genomewidesnp_5 = derive2 { name="pd.genomewidesnp.5"; version="3.14.1"; sha256="1kiqmcc07q2m7hkgqczqndk7frpwibpsi2c0ihr5av0vjrp118ak"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_genomewidesnp_6 = derive2 { name="pd.genomewidesnp.6"; version="3.14.1"; sha256="1f35nw987axlc5rsr97i7rwcy1dd8zjjj6jf4cg75y0la6rvhfw4"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_guigene_1_0_st = derive2 { name="pd.guigene.1.0.st"; version="3.12.0"; sha256="1rq5gbdm6k0shv82zy7vrqxahzffh1xikrd3a6d1ai67n129bv6f"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_guigene_1_1_st = derive2 { name="pd.guigene.1.1.st"; version="3.12.0"; sha256="0p53kkhaa4d6ib32sfnwvs363zir227dmzxp8yqma0z4kz0djdna"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_hc_g110 = derive2 { name="pd.hc.g110"; version="3.12.0"; sha256="014bb45m2pwwbz7aca6l6442188mkp5bsk46z7x18g0aa66p06hv"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_hg_focus = derive2 { name="pd.hg.focus"; version="3.12.0"; sha256="1qlkhxq76nb55c299g7x7x8wn8nx1mg4ra5b0faflsjirkh4b32s"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_hg_u133_plus_2 = derive2 { name="pd.hg.u133.plus.2"; version="3.12.0"; sha256="02ip0mf24lw818ij8xgk7cylb5q1059jwvbdd2aynqqwy2mg31h0"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_hg_u133a = derive2 { name="pd.hg.u133a"; version="3.12.0"; sha256="08bk5im2zkb1vif1i6bgfx068xcl5q5m0ac33zpscfdq4jashm7k"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_hg_u133a_2 = derive2 { name="pd.hg.u133a.2"; version="3.12.0"; sha256="1rlh62r5zmxllkc9izr6a4yr2n88flfz1rybwvi90yggc788chxy"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_hg_u133a_tag = derive2 { name="pd.hg.u133a.tag"; version="3.12.0"; sha256="1ndjzcydshh5f3cnrav91hi47bx92z6rqliiwirhx2cqk8bvz5yp"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_hg_u133b = derive2 { name="pd.hg.u133b"; version="3.12.0"; sha256="1mafh53bj6g30869pdyl59040m2crqqbfcbdpdxfpigxpqr3rb4c"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_hg_u219 = derive2 { name="pd.hg.u219"; version="3.12.0"; sha256="04kqvh5ilf83z2iwvfw7m8xsgjxy29vqayp1lgh38y48j0nn24dk"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_hg_u95a = derive2 { name="pd.hg.u95a"; version="3.12.0"; sha256="1c7d16im1xxs8v0ccn19klwv43qr6b4iw0k5hz9cl8m10jmyw49b"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_hg_u95av2 = derive2 { name="pd.hg.u95av2"; version="3.12.0"; sha256="1l3y2bhjk67jwxvxwn5rngzn5c2dzk4lk24cm74f6px845qw5sk7"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_hg_u95b = derive2 { name="pd.hg.u95b"; version="3.12.0"; sha256="0gyxh7nagya1hgh5vvwalxmhbqm9pii3l6h1mndvx2ib58msh49h"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_hg_u95c = derive2 { name="pd.hg.u95c"; version="3.12.0"; sha256="0p9yrwjw75r5dg3z0pl4yr04agjpqv9rz3in2faw3pqawdzndihq"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_hg_u95d = derive2 { name="pd.hg.u95d"; version="3.12.0"; sha256="0ygfx73b122b468zvr9lhw2vkr1aijasrazarqjqc8bjbfm4fybw"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_hg_u95e = derive2 { name="pd.hg.u95e"; version="3.12.0"; sha256="0cksi811m9fzjq5linlsarfswp3p7rdgks0js3chv91jr3v2z3a7"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_hg18_60mer_expr = derive2 { name="pd.hg18.60mer.expr"; version="3.12.0"; sha256="1lsfsgsj6gyv0q509d0axr6g2yv226zxqh8f2n1hw0kfxwl27bm8"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_ht_hg_u133_plus_pm = derive2 { name="pd.ht.hg.u133.plus.pm"; version="3.12.0"; sha256="1000f1d28yzc0kcdf380fkx3xlgla3kn4n9f2ddawzjb7igash92"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_ht_hg_u133a = derive2 { name="pd.ht.hg.u133a"; version="3.12.0"; sha256="14bnnxsn02mpyynn8bvl8c47id9l2wfakngbvpq4h5yjy689jm1c"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_ht_mg_430a = derive2 { name="pd.ht.mg.430a"; version="3.12.0"; sha256="10shsap47217p6zmb9fn86na7if965h45l2r787cisgyyn9n45mq"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_hta_2_0 = derive2 { name="pd.hta.2.0"; version="3.12.2"; sha256="004mm93wag59arzirws3cfqjv4whl8sbv558xxg7pj1ar026g4m3"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_hu6800 = derive2 { name="pd.hu6800"; version="3.12.0"; sha256="07dj0avpx53kwaab9s126pn844nal9kn3h288n1m0kihir2mrjmv"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_huex_1_0_st_v2 = derive2 { name="pd.huex.1.0.st.v2"; version="3.14.1"; sha256="1chlvjy1gvw5r8hfmkb34m3h7w2z4s5x9gsc50qbj84988k4gzga"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_hugene_1_0_st_v1 = derive2 { name="pd.hugene.1.0.st.v1"; version="3.14.1"; sha256="1ikd6h7wnyxm11j0had2wcsxfbfrwdfw9605bvvdgd63dlvdv5dk"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_hugene_1_1_st_v1 = derive2 { name="pd.hugene.1.1.st.v1"; version="3.14.1"; sha256="0bsvwr4h8j4niagnmf7d2jd714dqk4yzdhr664z6vpx6429s0rsw"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_hugene_2_0_st = derive2 { name="pd.hugene.2.0.st"; version="3.14.1"; sha256="02m5x9mrz4ca0w84ljmdpw7rnlzqbqdq0q5k4sg7izx99k5c8r59"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_hugene_2_1_st = derive2 { name="pd.hugene.2.1.st"; version="3.14.1"; sha256="07la78206cvilfm8l2fwrcyy3gpwnhn0p32ilv043ln9drka2r8h"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_maize = derive2 { name="pd.maize"; version="3.12.0"; sha256="02viqnqf02d75sbarxh1k76966yay5i6wwdx118s4c9nlr5q6aqg"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_mapping250k_nsp = derive2 { name="pd.mapping250k.nsp"; version="3.12.0"; sha256="10j8c18glhvg07zp6w84hlc6l3a3qkvcvfnq0blpjfdk3a2lndz7"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_mapping250k_sty = derive2 { name="pd.mapping250k.sty"; version="3.12.0"; sha256="1hpyijrkr6svxxhrdp6s4jjcvr44hhbrdhrzvnw5ywpykmbphryc"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_mapping50k_hind240 = derive2 { name="pd.mapping50k.hind240"; version="3.12.0"; sha256="1whpjdr4aql846cm8nzgs613pi12qdqfixhqcfv8wrqyks27kq6s"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_mapping50k_xba240 = derive2 { name="pd.mapping50k.xba240"; version="3.12.0"; sha256="1a1f3lh5ywhyjawdbj2fzban85c8jz70lfcv3pagd5piincjwxq8"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_margene_1_0_st = derive2 { name="pd.margene.1.0.st"; version="3.12.0"; sha256="1s4l57hw511cnzj197jvvzqs8ymfbf14khxcv4llg55prxnvvnfc"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_margene_1_1_st = derive2 { name="pd.margene.1.1.st"; version="3.12.0"; sha256="067jv9486win2kv563gr4vpc96lpl02zqd09cnma7ycd7l1nvj9s"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_medgene_1_0_st = derive2 { name="pd.medgene.1.0.st"; version="3.12.0"; sha256="0f5blbhlp160av6r37icjdq2lyrvip09r4yzxhfa2vlxpcm7i83m"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_medgene_1_1_st = derive2 { name="pd.medgene.1.1.st"; version="3.12.0"; sha256="1mlyv6qjcxj9q416pmjq36q0aqp5l47pkd557ayaqd7gm3ygikcq"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_medicago = derive2 { name="pd.medicago"; version="3.12.0"; sha256="1wm81jr9d04yiyg0alj197fjigcvjhz2kvh8j6jw9yaawppr0c5p"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_mg_u74a = derive2 { name="pd.mg.u74a"; version="3.12.0"; sha256="1jji6g49icsxyam9qx3mbaspg24q0hjavi0w75k99m2ckmllc47c"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_mg_u74av2 = derive2 { name="pd.mg.u74av2"; version="3.12.0"; sha256="08ym915fb26qbz2r9kzgf7znai4mc06lr59l1da0x02iaixagg32"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_mg_u74b = derive2 { name="pd.mg.u74b"; version="3.12.0"; sha256="0yav9ghdk8y12bsqam2r0p4q3r1yymfwrz1kdg0l7qfzw3mn141d"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_mg_u74bv2 = derive2 { name="pd.mg.u74bv2"; version="3.12.0"; sha256="0hxczlax8qnghp4f7d3ph2y5j3vz3k4iwl6lyw3sig51msl4q6sd"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_mg_u74c = derive2 { name="pd.mg.u74c"; version="3.12.0"; sha256="13sq8jmwlqrci87bnl313dyqzy6v141r3fqzh1frl1w66ilw9chm"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_mg_u74cv2 = derive2 { name="pd.mg.u74cv2"; version="3.12.0"; sha256="1s59s9ch1ynrmnsn5jl2b19phij4qamgcpfs3f5zhji6ip41lckj"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_mirna_1_0 = derive2 { name="pd.mirna.1.0"; version="3.12.0"; sha256="0klkmrljgvkqvdlm07c47bl0jppbzz95ikxabfi8b3ajv78k6gn1"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_mirna_2_0 = derive2 { name="pd.mirna.2.0"; version="3.12.0"; sha256="12ynrrr0jrc0kl6s4pkn9fv3r3bh6wsbrfyywb5bvxf71n75wnqy"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_mirna_3_0 = derive2 { name="pd.mirna.3.0"; version="3.12.0"; sha256="0awghps8nlisdj2anvs400dn1hwdi8iw6xlrw17qr70fznbihdsy"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_mirna_3_1 = derive2 { name="pd.mirna.3.1"; version="3.8.1"; sha256="0g8fjwhxmps1w5f7lvnv258qn2ipggs1ar4r810amqqxd0yd5ah2"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; }; + pd_mirna_4_0 = derive2 { name="pd.mirna.4.0"; version="3.12.0"; sha256="000gqhcvlpydrpr61853q22x8gvzmlf1kp7w98lll5g1vvwkw1ad"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_moe430a = derive2 { name="pd.moe430a"; version="3.12.0"; sha256="15qys3pm8nwkr385y8mj976k16as8r65lmzykm8cy0skl071i8wb"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_moe430b = derive2 { name="pd.moe430b"; version="3.12.0"; sha256="1xas3ld65xp2g1cfkd1n4v3yvx3g0g221c3ag550k552v0alfbyd"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_moex_1_0_st_v1 = derive2 { name="pd.moex.1.0.st.v1"; version="3.14.1"; sha256="13bqzbyqngbhj7yji568cc36fq0zw0bjaglfp2n9nnhdddd8b62x"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_mogene_1_0_st_v1 = derive2 { name="pd.mogene.1.0.st.v1"; version="3.14.1"; sha256="1hmb8kf91jd9q6b4pxiwlaj6ajzmkv1c3xsszyps5cwv13pgdjix"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_mogene_1_1_st_v1 = derive2 { name="pd.mogene.1.1.st.v1"; version="3.14.1"; sha256="13s7r8g29y56qbj2xm81r5kj65y2qcp5d24bakbhfcvz60wzljqf"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_mogene_2_0_st = derive2 { name="pd.mogene.2.0.st"; version="3.14.1"; sha256="0205jk6x8r35bmma771q6km631jlppm4y72zy85bv87dv4adxci8"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_mogene_2_1_st = derive2 { name="pd.mogene.2.1.st"; version="3.14.1"; sha256="14qwcq6yyy2ayrqv8kr33chlpgw3vkgq8iwb3yycsh3x3wz40jb8"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_mouse430_2 = derive2 { name="pd.mouse430.2"; version="3.12.0"; sha256="1ix7vkjy175cxbsbs67z38dhszxjik6370j0jkfpcknms6bh1db3"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_mouse430a_2 = derive2 { name="pd.mouse430a.2"; version="3.12.0"; sha256="11ywfshqxjmwf9q4sj97zv3ylynfkswcfaqglj883p4719lhxmc3"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_mta_1_0 = derive2 { name="pd.mta.1.0"; version="3.12.0"; sha256="07vznamds5lc1xnpv7kjwcrsd5zq0ap4gk8a85xqb93fmcc9ypqi"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_mu11ksuba = derive2 { name="pd.mu11ksuba"; version="3.12.0"; sha256="10fkys7y5b5frdrjqw3x2gqzp51lgg29nw6gxz25yi5fznc3nnv2"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_mu11ksubb = derive2 { name="pd.mu11ksubb"; version="3.12.0"; sha256="08734j3asq56v090zi0gzk3ryycjm78dfbb0xqmpr7ggqys96qp9"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_nugo_hs1a520180 = derive2 { name="pd.nugo.hs1a520180"; version="3.4.0"; sha256="1qc87zrrccld1hdqmrk1if98c6jq343gzlmib40wvshmrijp3sk3"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_nugo_mm1a520177 = derive2 { name="pd.nugo.mm1a520177"; version="3.4.0"; sha256="0568zvxc11w2i32wimhmi4271jbmpn97kb0vn4ns20hfg4h63m99"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_ovigene_1_0_st = derive2 { name="pd.ovigene.1.0.st"; version="3.12.0"; sha256="0vga20rb0v4yzd28szsppbgfhmn6ky85qrjj9llvacnlj1riwxsi"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_ovigene_1_1_st = derive2 { name="pd.ovigene.1.1.st"; version="3.12.0"; sha256="1vzrizvk1dbj6ngjxv9wpbm89q5mr8dkfhr0azrczs54c92xy48r"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_pae_g1a = derive2 { name="pd.pae.g1a"; version="3.12.0"; sha256="0b0bmzfrh7lm2i5d66z24iz0d5zj3qhw89aw011yssks7sr9lq90"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_plasmodium_anopheles = derive2 { name="pd.plasmodium.anopheles"; version="3.12.0"; sha256="0njd97jkg4hxd0jyq03227i00gmy0ccxznzqmp0mjqmkkhljn7nm"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_poplar = derive2 { name="pd.poplar"; version="3.12.0"; sha256="0j5xmf5hqvbb8ylsrvih92vxn1c1lah3mkffn64fji2lgqy9vjp9"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_porcine = derive2 { name="pd.porcine"; version="3.12.0"; sha256="0zx2gz90hhalaas3sf2rh8wcapjwmnckr0gq1r8p572chwf2rb81"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_porgene_1_0_st = derive2 { name="pd.porgene.1.0.st"; version="3.12.0"; sha256="1jiajzn31yjzs942w3i4cjqlpq81rkbryk961fqb9jpwldzg1pmy"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_porgene_1_1_st = derive2 { name="pd.porgene.1.1.st"; version="3.12.0"; sha256="038zwlckx58bw4x5naspfnvk4jcyc2g9bijrh1wd4m4k5mr1i4dk"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_rabgene_1_0_st = derive2 { name="pd.rabgene.1.0.st"; version="3.12.0"; sha256="0vwxzwgwh1a0fpyqsc3mnagin67wf2jmymm9kwhcnxargpmslm7k"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_rabgene_1_1_st = derive2 { name="pd.rabgene.1.1.st"; version="3.12.0"; sha256="0qs3ka3pdlrpqh66zb62jdfm2y6p2wyn6rcp7gb5qw0s8q9h170a"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_rae230a = derive2 { name="pd.rae230a"; version="3.12.0"; sha256="14kb35pcgxh2hmpzyqp9c2xirs0p6y5dvc3h2n568jmmdd14s7j5"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_rae230b = derive2 { name="pd.rae230b"; version="3.12.0"; sha256="1db6bm6qyrzwwa2scyw6qg7qcdqq97s5vy8kv0fnqc604b1jdzzq"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_raex_1_0_st_v1 = derive2 { name="pd.raex.1.0.st.v1"; version="3.14.1"; sha256="11sxhhpb4fy7wh5k7yxwwv141xgn4r1yshx097wicpa6561ffdkc"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_ragene_1_0_st_v1 = derive2 { name="pd.ragene.1.0.st.v1"; version="3.14.1"; sha256="0afnv1f5xvdh1vdsdfi5k1zscqzpdbf4b399wib3c8dg9vslccgx"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_ragene_1_1_st_v1 = derive2 { name="pd.ragene.1.1.st.v1"; version="3.14.1"; sha256="1krygwjhqs97gyh94xfbsfd8gg285fg5bgm7rqk7wlwp8fxx8xnn"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_ragene_2_0_st = derive2 { name="pd.ragene.2.0.st"; version="3.14.1"; sha256="1rq4ivv107853pyr4jrnbms4fgfzddndibrasgql9d4msca0sbz9"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_ragene_2_1_st = derive2 { name="pd.ragene.2.1.st"; version="3.14.1"; sha256="1k9zqhnck7fgp6g0b8vmasqjvdyqshzs567rz8qabw6jk5ifssvz"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_rat230_2 = derive2 { name="pd.rat230.2"; version="3.12.0"; sha256="0ysn0qi26b3llqs312an0mlgyahf4pgmixlcq2x2n925drns34gg"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_rcngene_1_0_st = derive2 { name="pd.rcngene.1.0.st"; version="3.12.0"; sha256="0hrhvy6dbw8g1h9qgm9frpmfp45pd5h0fnbvbvz94l98a5gda7xx"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_rcngene_1_1_st = derive2 { name="pd.rcngene.1.1.st"; version="3.12.0"; sha256="1lyizr096x5idasvlivl3lb67g7n2xvblrk5zfxglaf2fgpbrgwn"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_rg_u34a = derive2 { name="pd.rg.u34a"; version="3.12.0"; sha256="18jl5w1say8zyp50iqmd6jiw8ffa7qsk6sw7h7cw0j1g90ssf4y3"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_rg_u34b = derive2 { name="pd.rg.u34b"; version="3.12.0"; sha256="19v2g9lvadvba2dy0c0qn6j8qnsds2xa4cliiq12byad21833ss0"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_rg_u34c = derive2 { name="pd.rg.u34c"; version="3.12.0"; sha256="10j3hcszx637dfd55552b75qni0yryrjk8q6p0wkd5dh6p628qrx"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_rhegene_1_0_st = derive2 { name="pd.rhegene.1.0.st"; version="3.12.0"; sha256="1mx221xvxr4ng01ibq1pc472bn5rknfv3sjsbvvfmvqgpwk6z079"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_rhegene_1_1_st = derive2 { name="pd.rhegene.1.1.st"; version="3.12.0"; sha256="0f400qal4qmkxv705n5bzz07rkrz5zgs7swk8xp4pyp161fgb171"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_rhesus = derive2 { name="pd.rhesus"; version="3.12.0"; sha256="1zrpq7ppl2gaiprvz4sm0zsxqcw2nvn6qzwi3b0cimqf7r2091dd"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_rice = derive2 { name="pd.rice"; version="3.12.0"; sha256="0fmd505vianfspb1s5glr6aacnz45dq9skbk1qwm0a9ck6a6paav"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_rjpgene_1_0_st = derive2 { name="pd.rjpgene.1.0.st"; version="3.12.0"; sha256="18qj6sdjw17553lwcb3swdx0aiv54izdzzblgl88g90ijny8rbpa"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_rjpgene_1_1_st = derive2 { name="pd.rjpgene.1.1.st"; version="3.12.0"; sha256="0i99fyf6ya13z4hfjf3f5ssvys8wjhmwk894zy0p59p7nmphigyc"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_rn_u34 = derive2 { name="pd.rn.u34"; version="3.12.0"; sha256="0ayp6r7z7p61b1lfq9dkq4ips4apgjg6igrcnvsivlfhcfcfs0wf"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_rta_1_0 = derive2 { name="pd.rta.1.0"; version="3.12.2"; sha256="0x3j1a47lxhlqnhfvh1cii11rd433x16i6xmydwq2dkvm4xgd63h"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_rusgene_1_0_st = derive2 { name="pd.rusgene.1.0.st"; version="3.12.0"; sha256="1ik28yykkpdclr5hrv8lzafzfivakwvzgz49q7bpb1g6ihwylshw"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_rusgene_1_1_st = derive2 { name="pd.rusgene.1.1.st"; version="3.12.0"; sha256="090lxwxzj39d6qzlr7c3x50zf98g8x987rv1gdn0gcas15imya6n"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_s_aureus = derive2 { name="pd.s.aureus"; version="3.12.0"; sha256="0kszw94ymxgwd3midzkpl307ch3pyr4g5qjcf4s2jsq6mrvxw666"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_soybean = derive2 { name="pd.soybean"; version="3.12.0"; sha256="0xg90m7k1x9sgmhcp1qdwhxsyr2y5g28p7a4z6gd6mng2l7cgyh0"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_soygene_1_0_st = derive2 { name="pd.soygene.1.0.st"; version="3.12.0"; sha256="1hg90pma4ikdgxpw1f5mkjcw7na4mmjbhpr06dcssjl3bvmd4yxc"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_soygene_1_1_st = derive2 { name="pd.soygene.1.1.st"; version="3.12.0"; sha256="0978vbl59afgrzy0cmwq4mhsdz5rn5d929nz90fvczm6q8g24616"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_sugar_cane = derive2 { name="pd.sugar.cane"; version="3.12.0"; sha256="09m8m99l9mrhs4gr1rb02l54k8i2wgdzz88qlbpl4xmrfnfn99h6"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_tomato = derive2 { name="pd.tomato"; version="3.12.0"; sha256="12jn8i691j3kkgwa771f4kffzfcxv19vi0waw13akch7x7cc09q7"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_u133_x3p = derive2 { name="pd.u133.x3p"; version="3.12.0"; sha256="171rv9syn90k70ivaj8c48s827c08nycpyyc2b76jy405kaqb1gl"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_vitis_vinifera = derive2 { name="pd.vitis.vinifera"; version="3.12.0"; sha256="19r2k7wx3kygw6syqph24glw0b273gpi0z0y8n4bnd3a184g6hxz"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_wheat = derive2 { name="pd.wheat"; version="3.12.0"; sha256="12n8k5ah8fncbrb2hrpi2ah29fj5rxnh5j5zk8lfwhijg2zf52ra"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_x_laevis_2 = derive2 { name="pd.x.laevis.2"; version="3.12.0"; sha256="0zf3rc8rz05hzga2g5b8khszz6sr29dlp8z1jyn94ial284d0fn3"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_x_tropicalis = derive2 { name="pd.x.tropicalis"; version="3.12.0"; sha256="1pb6jm14k0g4z9vffi3clyh7rwc11c89hinb2amczg4xfm5lqrdr"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_xenopus_laevis = derive2 { name="pd.xenopus.laevis"; version="3.12.0"; sha256="1fxd95ak5s2dw16prxdwk20hisss32nywy9dc7y72bpqrv0v309y"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_yeast_2 = derive2 { name="pd.yeast.2"; version="3.12.0"; sha256="0l6sxg79xmlb7gdxx4bx24l35jgx5y2qfp3pxzcmdnd7c7qy6z5j"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_yg_s98 = derive2 { name="pd.yg.s98"; version="3.12.0"; sha256="1krx7kkjlyc41739c349z0sdbslp19iqfai0xzy6f4jk15524vhj"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_zebgene_1_0_st = derive2 { name="pd.zebgene.1.0.st"; version="3.12.0"; sha256="1vywph8shn23k0s8jmvx34rj34y1zxgwcssjnzbipm71f2sa15hw"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_zebgene_1_1_st = derive2 { name="pd.zebgene.1.1.st"; version="3.12.0"; sha256="0xs3kx7l78dfqkasgz8n5s8qjia5qhdcnj1l8al0ivy8mwvlpyxs"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pd_zebrafish = derive2 { name="pd.zebrafish"; version="3.12.0"; sha256="0gg7y7w51pv0vf39qzyaf09wl3vxy222nr69zgxg7cylwxmaky7v"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; pedbarrayv10_db = derive2 { name="pedbarrayv10.db"; version="3.2.3"; sha256="01sn7qh5r2c2ph7gqirlzlplxscsmczf7ajffd9rsx59932f71kx"; depends=[AnnotationDbi org_Hs_eg_db]; }; pedbarrayv9_db = derive2 { name="pedbarrayv9.db"; version="3.2.3"; sha256="0x9m9m4nmdhc0j5244avmlfwljcpw0sh44l1b00cx05swi3vmjlp"; depends=[AnnotationDbi org_Hs_eg_db]; }; phastCons100way_UCSC_hg19 = derive2 { name="phastCons100way.UCSC.hg19"; version="3.7.2"; sha256="1jmc4k4zgkx5vr2plnidnd9bidlwlb0kr7mjg60cqjw7dq7jl1fa"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; @@ -868,7 +868,7 @@ in with self; { sugarcanecdf = derive2 { name="sugarcanecdf"; version="2.18.0"; sha256="0wghc6wr7iwkql63m3wibjjdcdpqd53z0g5rxdh553sjb0ca2n7z"; depends=[AnnotationDbi]; }; sugarcaneprobe = derive2 { name="sugarcaneprobe"; version="2.18.0"; sha256="17zrydd8xd7m61bp750xlpcak0m3zgl0mvknz9s7mv2a35kp02ih"; depends=[AnnotationDbi]; }; synaptome_data = derive2 { name="synaptome.data"; version="0.99.3"; sha256="08j7arr8lhm17ikhxxg6f8vx45ixchvh33f2wla2486dvd160pw4"; depends=[AnnotationHub]; }; - synaptome_db = derive2 { name="synaptome.db"; version="0.99.8"; sha256="0g7pah9q1ci0ykm1lf3gdssfxmc33qkc5y428wdb8fzirqh5csx4"; depends=[AnnotationHub synaptome_data]; }; + synaptome_db = derive2 { name="synaptome.db"; version="0.99.8"; sha256="0g7pah9q1ci0ykm1lf3gdssfxmc33qkc5y428wdb8fzirqh5csx4"; depends=[AnnotationHub DBI dbplyr dplyr igraph Rdpack RSQLite synaptome_data]; }; targetscan_Hs_eg_db = derive2 { name="targetscan.Hs.eg.db"; version="0.6.1"; sha256="1p14jyhn1d2m6kww9vsb96263g8crnrff7qgyiz46pp9ww8mvxf4"; depends=[AnnotationDbi]; }; targetscan_Mm_eg_db = derive2 { name="targetscan.Mm.eg.db"; version="0.6.1"; sha256="0ad6vxpwn9x82qcrpwcy1lwg0q3ik4vabxn01k6gwmbpvydz9cf5"; depends=[AnnotationDbi]; }; test1cdf = derive2 { name="test1cdf"; version="2.18.0"; sha256="0nmkrp4b2p09pg8ndcnfv5y7w94xah6fa5pff60dp1s2s8dcgcr4"; depends=[AnnotationDbi]; }; diff --git a/pkgs/development/r-modules/bioc-experiment-packages.nix b/pkgs/development/r-modules/bioc-experiment-packages.nix index 20f26e76e64f..3d40d9cad990 100644 --- a/pkgs/development/r-modules/bioc-experiment-packages.nix +++ b/pkgs/development/r-modules/bioc-experiment-packages.nix @@ -22,8 +22,8 @@ in with self; { AssessORFData = derive2 { name="AssessORFData"; version="1.12.0"; sha256="0v9xlm2wxlarbhj57jacn52hlxxylyfmr1gwmkss2pzw3hjyi4v1"; depends=[DECIPHER]; }; BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.32.0"; sha256="1zl54rg50v1m19fln1j1a3a22xi989sj8kk7ccjjgjhybsrvyi0r"; depends=[beadarray GEOquery limma]; }; BeadSorted_Saliva_EPIC = derive2 { name="BeadSorted.Saliva.EPIC"; version="1.2.0"; sha256="0fmjqwwnxlfpwl6ldhq92w9cxf4x4fcm349xk3jx8q8mj20zfsm1"; depends=[ExperimentHub minfi]; }; - BioImageDbs = derive2 { name="BioImageDbs"; version="1.2.0"; sha256="0ldpbjdj5xhh7sxkjrxgp7b5yayfjvw5yah4dxgbrmw37hqssd3q"; depends=[EBImage ExperimentHub]; }; - BloodCancerMultiOmics2017 = derive2 { name="BloodCancerMultiOmics2017"; version="1.14.0"; sha256="1nx55qhkkjvmljby04wn0fmbgcrdmqxqgxf5h4dasw884msfha4d"; depends=[Biobase DESeq2 SummarizedExperiment]; }; + BioImageDbs = derive2 { name="BioImageDbs"; version="1.2.0"; sha256="0ldpbjdj5xhh7sxkjrxgp7b5yayfjvw5yah4dxgbrmw37hqssd3q"; depends=[animation EBImage einsum ExperimentHub filesstrings magick magrittr markdown rmarkdown]; }; + BloodCancerMultiOmics2017 = derive2 { name="BloodCancerMultiOmics2017"; version="1.14.0"; sha256="1nx55qhkkjvmljby04wn0fmbgcrdmqxqgxf5h4dasw884msfha4d"; depends=[beeswarm Biobase DESeq2 devtools dplyr ggdendro ggplot2 glmnet gtable ipflasso RColorBrewer reshape2 scales SummarizedExperiment survival tibble]; }; CCl4 = derive2 { name="CCl4"; version="1.32.0"; sha256="1ljjj2fk4cji4aw2j8kf4rjgfjfbdyg8sfhvahvpyqgqwvmsmdx5"; depends=[Biobase limma]; }; CLL = derive2 { name="CLL"; version="1.34.0"; sha256="017kjpv5rqn6vg3d4drnxj7arjxqw1hw1lxx9p0bdzr2isahcs6g"; depends=[affy Biobase]; }; CLLmethylation = derive2 { name="CLLmethylation"; version="1.14.0"; sha256="1b3pbf3rzrl9by95gkmj3ssd1qms3hm24s1ds286jvps1y8gq97m"; depends=[ExperimentHub SummarizedExperiment]; }; @@ -35,36 +35,36 @@ in with self; { CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.26.0"; sha256="1mk7xwxxw08wv9xnmk9szm7a90di2lp1wb35a206jr7kb3m4zx2i"; depends=[Cardinal]; }; CellMapperData = derive2 { name="CellMapperData"; version="1.20.0"; sha256="143x9j5shnqz1s816gwi7q79np38gwq0iccc9sdl8yvxhjdw0079"; depends=[CellMapper ExperimentHub]; }; ChAMPdata = derive2 { name="ChAMPdata"; version="2.26.0"; sha256="1zgikb6milp77kcfbizqc5ja94n6zx7pm77rg20j4v5nvpff7lh8"; depends=[BiocGenerics GenomicRanges]; }; - ChIC_data = derive2 { name="ChIC.data"; version="1.14.0"; sha256="1la6z7rd2h8annymgvybrrw31af37pqydp5wj32bpz6fcz21bx7h"; depends=[genomeIntervals]; }; - ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.32.0"; sha256="0hbw1asyajqmshw0j897ss60yl350jl48pywnyvhkaws8bz1iina"; depends=[]; }; + ChIC_data = derive2 { name="ChIC.data"; version="1.14.0"; sha256="1la6z7rd2h8annymgvybrrw31af37pqydp5wj32bpz6fcz21bx7h"; depends=[caret genomeIntervals randomForest]; }; + ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.32.0"; sha256="0hbw1asyajqmshw0j897ss60yl350jl48pywnyvhkaws8bz1iina"; depends=[bigmemory]; }; ChIPexoQualExample = derive2 { name="ChIPexoQualExample"; version="1.18.0"; sha256="1q6lg5dkvmwfjaw771x008ipzynd0jhap97rnkmcivsf84sw03nb"; depends=[]; }; - ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.32.0"; sha256="0z7hxd7nsg1p3z1min5dcdbwgz9n3p7saad0mmvj7388g48fqwc3"; depends=[affy limma qvalue]; }; + ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.32.0"; sha256="0z7hxd7nsg1p3z1min5dcdbwgz9n3p7saad0mmvj7388g48fqwc3"; depends=[affy hexbin limma qvalue statmod]; }; CluMSIDdata = derive2 { name="CluMSIDdata"; version="1.10.0"; sha256="1rxs2lyz5rz3zjl4z34n8iag76ks6gjaalh2adzs6dy9xnzbjnpm"; depends=[]; }; ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.30.0"; sha256="06dbyh9d7i11rzm13i0pnpn8qhd9kia8my15vs7m26cmf9b53z4j"; depends=[]; }; - CopyNeutralIMA = derive2 { name="CopyNeutralIMA"; version="1.12.0"; sha256="0kkjbw1aw0fbj5mgbxq1s811v9c5fgbiv6h5qj41cp8rbghf99lp"; depends=[ExperimentHub]; }; + CopyNeutralIMA = derive2 { name="CopyNeutralIMA"; version="1.12.0"; sha256="0kkjbw1aw0fbj5mgbxq1s811v9c5fgbiv6h5qj41cp8rbghf99lp"; depends=[ExperimentHub Rdpack]; }; CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.26.0"; sha256="1zsp03s6crrq1awhwqnn94lpmww7iraymjjxb7195b6cyyljf4ai"; depends=[]; }; - DAPARdata = derive2 { name="DAPARdata"; version="1.24.0"; sha256="1wxgcdkz6vsicak21z9ibknqqmj7jka00rkprjav8vyw30jgrgl0"; depends=[MSnbase]; }; + DAPARdata = derive2 { name="DAPARdata"; version="1.24.0"; sha256="1wxgcdkz6vsicak21z9ibknqqmj7jka00rkprjav8vyw30jgrgl0"; depends=[knitr MSnbase]; }; DExMAdata = derive2 { name="DExMAdata"; version="1.2.0"; sha256="1wlh9gsrkd6njx5g5g2q2i7mqznfmy0cd1p7r18lf8v65mn3k0bi"; depends=[Biobase]; }; DLBCL = derive2 { name="DLBCL"; version="1.34.0"; sha256="1y23bk5ywkdw57a6y4sgwz1h4jm81djxnhxw7xp9xdv1kwg6p8fj"; depends=[Biobase]; }; - DMRcatedata = derive2 { name="DMRcatedata"; version="2.12.0"; sha256="0z5jlmarvakmq5vl8pyym544xsy8rds1fprvjy0s8q6iw2y3iknb"; depends=[ExperimentHub GenomicFeatures Gviz IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 rtracklayer]; }; + DMRcatedata = derive2 { name="DMRcatedata"; version="2.12.0"; sha256="0z5jlmarvakmq5vl8pyym544xsy8rds1fprvjy0s8q6iw2y3iknb"; depends=[ExperimentHub GenomicFeatures Gviz IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 plyr readxl rtracklayer]; }; DREAM4 = derive2 { name="DREAM4"; version="1.30.0"; sha256="0gr0n8j4a347c5wwnpq2z2gxpvxv3swfhhlj3izc8rdyw11cf41v"; depends=[SummarizedExperiment]; }; - DeSousa2013 = derive2 { name="DeSousa2013"; version="1.30.0"; sha256="1lkzzamwby4xfjj7ffnhmnxcwjaspvr7z3ijwrymd2pky46pq143"; depends=[affy AnnotationDbi Biobase ConsensusClusterPlus frma frmaTools hgu133plus2_db hgu133plus2frmavecs siggenes sva]; }; - DmelSGI = derive2 { name="DmelSGI"; version="1.26.0"; sha256="0zii8zrqlmcl1cvdvsiikah0yg7h2ssj571j7fgh3cz95c9mdjhf"; depends=[limma rhdf5]; }; + DeSousa2013 = derive2 { name="DeSousa2013"; version="1.30.0"; sha256="1lkzzamwby4xfjj7ffnhmnxcwjaspvr7z3ijwrymd2pky46pq143"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; }; + DmelSGI = derive2 { name="DmelSGI"; version="1.26.0"; sha256="0zii8zrqlmcl1cvdvsiikah0yg7h2ssj571j7fgh3cz95c9mdjhf"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; }; DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.32.0"; sha256="0dnp01n5lmssb7pxyrgx0ks9cxkb5xk6ni3n5f3l6gc6a0lrv9zz"; depends=[EBImage]; }; DropletTestFiles = derive2 { name="DropletTestFiles"; version="1.4.0"; sha256="10928x20i84f81ma6wdxkkii1l0pah2wbxvj8ady4gm04s7klvnb"; depends=[AnnotationHub ExperimentHub S4Vectors]; }; DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.30.0"; sha256="10w2sj29bchry0w4340s48944kxy764wbp680a27jfcw0phwqw1n"; depends=[]; }; - DuoClustering2018 = derive2 { name="DuoClustering2018"; version="1.12.0"; sha256="0x9nlhjfks2n834x9acmcw2hdlpqxw7ac1gqdwiphcdkzwwnpfmy"; depends=[ExperimentHub]; }; + DuoClustering2018 = derive2 { name="DuoClustering2018"; version="1.12.0"; sha256="0x9nlhjfks2n834x9acmcw2hdlpqxw7ac1gqdwiphcdkzwwnpfmy"; depends=[dplyr ExperimentHub ggplot2 ggthemes magrittr mclust purrr reshape2 tidyr viridis]; }; DvDdata = derive2 { name="DvDdata"; version="1.30.0"; sha256="18as6sqfsfwgry1pm47h716c1nhcjfn82g6r9r3zs5kcvpr4phs7"; depends=[]; }; EGSEAdata = derive2 { name="EGSEAdata"; version="1.22.0"; sha256="1qzc6ir1w6s2l2kw1mb8l1sxc053f8bp5b9nllybbkpa7ialcz8y"; depends=[]; }; ELMER_data = derive2 { name="ELMER.data"; version="2.18.0"; sha256="00cnici4cnp5sw8ll9xvx1zw5qkjixyp5zffllw7qxp2q4v709z3"; depends=[GenomicRanges]; }; EatonEtAlChIPseq = derive2 { name="EatonEtAlChIPseq"; version="0.32.0"; sha256="12b40z3b4h9681zvyxkaycb26y7slgkqhjx2kwn793qaf5bhgabc"; depends=[GenomicRanges rtracklayer ShortRead]; }; FANTOM3and4CAGE = derive2 { name="FANTOM3and4CAGE"; version="1.30.0"; sha256="1y8q8clhxqyy5zdsnv084jzjaslpzlkl0502i3i7ang7g6xh0f8n"; depends=[]; }; FIs = derive2 { name="FIs"; version="1.22.0"; sha256="0zj3z7rk88s2jchrdkf6rq3ksnhlzg9h86n38kjyv6qbr6hifgkd"; depends=[]; }; - FieldEffectCrc = derive2 { name="FieldEffectCrc"; version="1.4.0"; sha256="09wphzb2ycp9hlqz5qjmw4r2vwm4fgsjyvcwsvqy0d4k725gkxjd"; depends=[AnnotationHub BiocStyle DESeq2 ExperimentHub SummarizedExperiment]; }; - Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.30.0"; sha256="0w60h8xcp1rp4lvq87qfqbj0f497jc4w54463wnac6dbph8bsda3"; depends=[Biobase limma]; }; - Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.30.0"; sha256="1fs6h0dmvigzkqn5iqfzq84zz2dv983w5mwj2bwbq3b9iclc30dg"; depends=[Fletcher2013a RedeR RTN]; }; + FieldEffectCrc = derive2 { name="FieldEffectCrc"; version="1.4.0"; sha256="09wphzb2ycp9hlqz5qjmw4r2vwm4fgsjyvcwsvqy0d4k725gkxjd"; depends=[AnnotationHub BiocStyle DESeq2 ExperimentHub RUnit SummarizedExperiment]; }; + Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.30.0"; sha256="0w60h8xcp1rp4lvq87qfqbj0f497jc4w54463wnac6dbph8bsda3"; depends=[Biobase gplots limma VennDiagram]; }; + Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.30.0"; sha256="1fs6h0dmvigzkqn5iqfzq84zz2dv983w5mwj2bwbq3b9iclc30dg"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; }; FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.32.0"; sha256="1js5ibv4kcs5q8xwcla6pz5na7ys7f8h59s91djv8l3g8fl5v0c1"; depends=[minfi]; }; - FlowSorted_Blood_EPIC = derive2 { name="FlowSorted.Blood.EPIC"; version="1.12.1"; sha256="0i8mb6cbdh5gnbp38dsk5qsyx50a1dpsnvjl46q6bx1bdfchzfh0"; depends=[ExperimentHub genefilter IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi S4Vectors SummarizedExperiment]; }; + FlowSorted_Blood_EPIC = derive2 { name="FlowSorted.Blood.EPIC"; version="1.12.1"; sha256="0i8mb6cbdh5gnbp38dsk5qsyx50a1dpsnvjl46q6bx1bdfchzfh0"; depends=[ExperimentHub genefilter IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi nlme quadprog S4Vectors SummarizedExperiment]; }; FlowSorted_CordBlood_450k = derive2 { name="FlowSorted.CordBlood.450k"; version="1.22.0"; sha256="0kb380hq9m90jspgccl68hxxvkslxf67isb0w86x6glpsz8q0bgf"; depends=[minfi]; }; FlowSorted_CordBloodCombined_450k = derive2 { name="FlowSorted.CordBloodCombined.450k"; version="1.10.0"; sha256="0xggjhqkd7j0rfypx5armarmvkhl5a1f7fw0iwygrdg5g4804n3j"; depends=[ExperimentHub FlowSorted_Blood_EPIC IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi SummarizedExperiment]; }; FlowSorted_CordBloodNorway_450k = derive2 { name="FlowSorted.CordBloodNorway.450k"; version="1.20.0"; sha256="0yqjy03lf2ihvw3r9pz5cz67rr07i8n8n7dnmzvcbvgvjb98g82p"; depends=[minfi]; }; @@ -77,15 +77,15 @@ in with self; { GSE62944 = derive2 { name="GSE62944"; version="1.22.0"; sha256="17dp87ahfch4jmw1d21s20zr28a0qxnw6ly7r7czis1fxxnc2nhi"; depends=[Biobase GEOquery]; }; GSVAdata = derive2 { name="GSVAdata"; version="1.30.0"; sha256="1yscdsjjq0dyjgx4mws97z5inxlp68gd37haza7k4q9hrdrg2qyc"; depends=[Biobase GSEABase hgu95a_db]; }; GWASdata = derive2 { name="GWASdata"; version="1.32.0"; sha256="05inid2ch6c7idyp4awvpfdw867mhnsl2k06k0bw0h8hhwnqpssk"; depends=[GWASTools]; }; - GenomicDistributionsData = derive2 { name="GenomicDistributionsData"; version="1.2.0"; sha256="0kiqhqc9c46l76spc0fws9qrzhs3dyf2n8nhzq2zjbvxpbnm7hk0"; depends=[AnnotationFilter AnnotationHub BSgenome ensembldb ExperimentHub GenomeInfoDb GenomicFeatures GenomicRanges]; }; + GenomicDistributionsData = derive2 { name="GenomicDistributionsData"; version="1.2.0"; sha256="0kiqhqc9c46l76spc0fws9qrzhs3dyf2n8nhzq2zjbvxpbnm7hk0"; depends=[AnnotationFilter AnnotationHub BSgenome data_table ensembldb ExperimentHub GenomeInfoDb GenomicFeatures GenomicRanges]; }; GeuvadisTranscriptExpr = derive2 { name="GeuvadisTranscriptExpr"; version="1.22.0"; sha256="0hdpwqbsj4fyg5cbg8zb0gaw1f2w8wxk6b9f3zf6lg3h1grr23p0"; depends=[]; }; HCAData = derive2 { name="HCAData"; version="1.10.0"; sha256="0l84d13sz6ai87rrv0jvssbvwb8jrrdn6k9l35phxhh78zbl0w1b"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; - HD2013SGI = derive2 { name="HD2013SGI"; version="1.34.0"; sha256="1k7igh15bmcqr1ar3xcpiam7wypvkcazswjs97r44m9ib8xjm93y"; depends=[EBImage geneplotter limma splots]; }; + HD2013SGI = derive2 { name="HD2013SGI"; version="1.34.0"; sha256="1k7igh15bmcqr1ar3xcpiam7wypvkcazswjs97r44m9ib8xjm93y"; depends=[EBImage geneplotter gplots limma LSD RColorBrewer splots vcd]; }; HDCytoData = derive2 { name="HDCytoData"; version="1.14.0"; sha256="0n1kk4g1agclpmvxy6mqzmik1d5ba3s7q6w5fsmryxbmdslaqgdr"; depends=[ExperimentHub flowCore SummarizedExperiment]; }; HEEBOdata = derive2 { name="HEEBOdata"; version="1.32.0"; sha256="1nf388mj6iw8z6kx7vwzvmkqcf2xp3srinh8af0rdj97571rqm19"; depends=[]; }; HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.34.0"; sha256="12dkiif41ailb9bmclk215s9hrl3xsh7w5m6ms799g4lr21hpm4c"; depends=[]; }; - HMP16SData = derive2 { name="HMP16SData"; version="1.14.0"; sha256="12xq1vvxvv16y9szfs5qzmkpi8v8v67vm6yln3kda43x1wfc1naz"; depends=[AnnotationHub ExperimentHub S4Vectors SummarizedExperiment]; }; - HMP2Data = derive2 { name="HMP2Data"; version="1.8.0"; sha256="1h4lyxva5hzvdknr7pndq49js0yz62anshaq1apdm3zcga979c2z"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment phyloseq S4Vectors SummarizedExperiment]; }; + HMP16SData = derive2 { name="HMP16SData"; version="1.14.0"; sha256="12xq1vvxvv16y9szfs5qzmkpi8v8v67vm6yln3kda43x1wfc1naz"; depends=[AnnotationHub assertthat dplyr ExperimentHub kableExtra knitr magrittr readr S4Vectors stringr SummarizedExperiment tibble]; }; + HMP2Data = derive2 { name="HMP2Data"; version="1.8.0"; sha256="1h4lyxva5hzvdknr7pndq49js0yz62anshaq1apdm3zcga979c2z"; depends=[AnnotationHub assertthat data_table dplyr ExperimentHub kableExtra knitr magrittr MultiAssayExperiment phyloseq readr S4Vectors SummarizedExperiment]; }; HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="1.14.0"; sha256="0z1iid7q5aj429npfmszhx1na4rbx4kzw47dk4153lq63zapdig9"; depends=[]; }; HarmanData = derive2 { name="HarmanData"; version="1.22.0"; sha256="0dk8anr68c3p8c88xqpvy3v46vgk2w9zdcw0ikg1593xsdhpzp1k"; depends=[]; }; HarmonizedTCGAData = derive2 { name="HarmonizedTCGAData"; version="1.16.0"; sha256="1ar9m9qkbxbg0n0acv96am6nsvy7gv85787vp3qhdvdq6cmzf39g"; depends=[ExperimentHub]; }; @@ -93,9 +93,9 @@ in with self; { HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="1.14.0"; sha256="1kcaf2slwrm1s6y29n1za5aadzh7hqmiyb9zq9w5k9inxqhdbmg8"; depends=[]; }; HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.30.0"; sha256="0xqyjj64sqlh5zynqi56nr2jzc4r558bviqiybgv9zxq1m3pqddg"; depends=[]; }; HighlyReplicatedRNASeq = derive2 { name="HighlyReplicatedRNASeq"; version="1.6.0"; sha256="059sm5lwx2k3h8p2j07k7vg3p85nbgszpfp7q14c1wc350cm275c"; depends=[ExperimentHub S4Vectors SummarizedExperiment]; }; - Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.30.0"; sha256="1lyb33rlaciicz6nj4w5jydgvbib9bi45z3676y78dajpvd8gsmb"; depends=[affy Biobase genefilter geneplotter KEGGREST mouse4302_db]; }; + Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.30.0"; sha256="1lyb33rlaciicz6nj4w5jydgvbib9bi45z3676y78dajpvd8gsmb"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; }; HumanAffyData = derive2 { name="HumanAffyData"; version="1.20.0"; sha256="0xvy3vhdi9d944cij15k0yz3gja910kfxrrm29d9m85ga06nzzs1"; depends=[Biobase ExperimentHub]; }; - IHWpaper = derive2 { name="IHWpaper"; version="1.22.0"; sha256="05hppzncnyn8ngr8iy975pmb5y0sq6m1510q8jh3dixwr5vk5zyf"; depends=[Biobase BiocGenerics BiocParallel DESeq2 genefilter IHW qvalue SummarizedExperiment]; }; + IHWpaper = derive2 { name="IHWpaper"; version="1.22.0"; sha256="05hppzncnyn8ngr8iy975pmb5y0sq6m1510q8jh3dixwr5vk5zyf"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; }; ITALICSData = derive2 { name="ITALICSData"; version="2.32.0"; sha256="13psfxkv4wxlk1fhlvilpw5l4k84xc0f97j0hisdmlm9y57km62v"; depends=[]; }; Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.30.0"; sha256="1g2jrqz32vlvxn5v1p9pzl99b2qjrq9cxv61zl4rip1k3q9zw7mf"; depends=[]; }; IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.32.0"; sha256="19jk28hflhycp2mnic594bymqyv2bdwl88rmpmv6ggdc6z6prcll"; depends=[]; }; @@ -106,7 +106,7 @@ in with self; { KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.32.0"; sha256="03zakm4hnzm5bpj1is6idpljqg1sfzldv6i6z9rkg36dahcjkgli"; depends=[Biobase BiocGenerics]; }; KOdata = derive2 { name="KOdata"; version="1.20.0"; sha256="11ar6bp6j615hcqa8w0dha1d57r8kxwjr0aikmxl3j058yrv2p6m"; depends=[]; }; LRcellTypeMarkers = derive2 { name="LRcellTypeMarkers"; version="1.2.0"; sha256="0c7nwyskm5kx2z56vr8wb1c8ll8z3z7ywi52s4d1nmhmj9dyzmb3"; depends=[ExperimentHub]; }; - LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.32.0"; sha256="1kgydp7x3kdhh5kzwrh9fjc9zfw1jx4bbkgxc46vh1dwz8kbkbch"; depends=[IRanges]; }; + LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.32.0"; sha256="1kgydp7x3kdhh5kzwrh9fjc9zfw1jx4bbkgxc46vh1dwz8kbkbch"; depends=[IRanges KernSmooth]; }; ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.26.0"; sha256="0ag820shlpknc2zbqiwafisbg4hr7paqv3g26ghrvyvbkmqmj1w8"; depends=[methylPipe]; }; LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.30.0"; sha256="0sfadyna4njvz1dn0z3vhvyykl864534qr200swj4cmsny52bsdh"; depends=[]; }; LungCancerLines = derive2 { name="LungCancerLines"; version="0.32.0"; sha256="1clsdv7ryk46i7640sj77xnwqqw32aa9gy9g8hvhg4sliiqmgvjw"; depends=[Rsamtools]; }; @@ -122,8 +122,8 @@ in with self; { MOFAdata = derive2 { name="MOFAdata"; version="1.10.0"; sha256="1w0bq94ivm070bna64k6z3jv8y4k5wdqffy47kgdn3ncrhcmwn6q"; depends=[]; }; MSMB = derive2 { name="MSMB"; version="1.12.0"; sha256="08d4him513am05hsrd3i430cwjqw3qpv35b84kdf87cyfvz0wl1n"; depends=[]; }; MUGAExampleData = derive2 { name="MUGAExampleData"; version="1.14.0"; sha256="04ca666vaa2kshj98s8kx651pa3lmv1v6m2s22qxv34cj1ky54jl"; depends=[]; }; - MetaGxBreast = derive2 { name="MetaGxBreast"; version="1.14.0"; sha256="08cva4f3cb2mygf7i4b44xnsck75sbxfc05lxih478zcgm6n5v1w"; depends=[AnnotationHub Biobase ExperimentHub impute SummarizedExperiment]; }; - MetaGxOvarian = derive2 { name="MetaGxOvarian"; version="1.14.0"; sha256="1dvzmass9yg53gq26lpv6ic966agbf3y8ci7iq2q3b1ljs3x84af"; depends=[AnnotationHub Biobase ExperimentHub impute SummarizedExperiment]; }; + MetaGxBreast = derive2 { name="MetaGxBreast"; version="1.14.0"; sha256="08cva4f3cb2mygf7i4b44xnsck75sbxfc05lxih478zcgm6n5v1w"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; + MetaGxOvarian = derive2 { name="MetaGxOvarian"; version="1.14.0"; sha256="1dvzmass9yg53gq26lpv6ic966agbf3y8ci7iq2q3b1ljs3x84af"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; MetaGxPancreas = derive2 { name="MetaGxPancreas"; version="1.14.0"; sha256="140ypxhn0ibgisa0rwdpn5pcl9zgi10n4fpbr9v2vmllsfvc74rc"; depends=[AnnotationHub ExperimentHub impute S4Vectors SummarizedExperiment]; }; MethylAidData = derive2 { name="MethylAidData"; version="1.26.0"; sha256="1hdl459vfqaz545nc1yqssxn235rf26isvg9g8zzxm4hbr4jwh5y"; depends=[MethylAid]; }; MethylSeqData = derive2 { name="MethylSeqData"; version="1.4.0"; sha256="1n347m96hx5mnfwxv82iaxpl5kqamvqgxpw2s7q7b2wywcis3fdq"; depends=[ExperimentHub GenomeInfoDb GenomicRanges HDF5Array IRanges rhdf5 S4Vectors SummarizedExperiment]; }; @@ -132,12 +132,12 @@ in with self; { NCIgraphData = derive2 { name="NCIgraphData"; version="1.30.0"; sha256="12csh0jy8kx7xv14vqsimc3f3vl6ka5j04siq9mwrl026x0jyk95"; depends=[]; }; NGScopyData = derive2 { name="NGScopyData"; version="1.14.0"; sha256="1plgsrfq8s56f40x0sb9pk2c1pmq4r3qiyjlc8d78a0sd4vn4gxa"; depends=[]; }; NanoporeRNASeq = derive2 { name="NanoporeRNASeq"; version="1.4.0"; sha256="07vc2xw3d3wjbqm17zpz7sp3jmignk5riwrfqbrpwp3bg77xffg6"; depends=[ExperimentHub]; }; - NestLink = derive2 { name="NestLink"; version="1.10.0"; sha256="014knbyz67sq93gvp3ra5ajsarkb51f0v2rbjbq5qr2zr3xafyj5"; depends=[AnnotationHub Biostrings ExperimentHub ShortRead]; }; + NestLink = derive2 { name="NestLink"; version="1.10.0"; sha256="014knbyz67sq93gvp3ra5ajsarkb51f0v2rbjbq5qr2zr3xafyj5"; depends=[AnnotationHub Biostrings ExperimentHub gplots protViz ShortRead]; }; Neve2006 = derive2 { name="Neve2006"; version="0.32.0"; sha256="0hhpcfwpmi3j57w26f4916lv7sj7nrjiffbmfysl5sqsjw0djn89"; depends=[annotate Biobase hgu133a_db]; }; - NxtIRFdata = derive2 { name="NxtIRFdata"; version="1.0.0"; sha256="10y40srz5rq465mhqag2kqz9kpr7qymd41lyyhbc5fvglc8l37js"; depends=[BiocFileCache ExperimentHub rtracklayer]; }; + NxtIRFdata = derive2 { name="NxtIRFdata"; version="1.0.0"; sha256="10y40srz5rq465mhqag2kqz9kpr7qymd41lyyhbc5fvglc8l37js"; depends=[BiocFileCache ExperimentHub R_utils rtracklayer]; }; OMICsPCAdata = derive2 { name="OMICsPCAdata"; version="1.12.0"; sha256="1l4rmfdcfafh8pyvz8bsl4rm3859c8ckzw9kv2dc82djgk0b2lcq"; depends=[MultiAssayExperiment]; }; ObMiTi = derive2 { name="ObMiTi"; version="1.2.0"; sha256="131n0q34xizcw21sjrxcf185qfpxfc8m4xypmp812151f886p405"; depends=[ExperimentHub SummarizedExperiment]; }; - OnassisJavaLibs = derive2 { name="OnassisJavaLibs"; version="1.16.0"; sha256="0hw0djfc8bfk51np4x7ik8nr2dscn5wd7gvbr0564yfz2ilf8l6v"; depends=[]; }; + OnassisJavaLibs = derive2 { name="OnassisJavaLibs"; version="1.16.0"; sha256="0hw0djfc8bfk51np4x7ik8nr2dscn5wd7gvbr0564yfz2ilf8l6v"; depends=[rJava]; }; PCHiCdata = derive2 { name="PCHiCdata"; version="1.22.0"; sha256="0hk7fwh456xmlfgdgp6wsdn38v1g8b18f28f0wswgxxg1hy4mhih"; depends=[Chicago]; }; PREDAsampledata = derive2 { name="PREDAsampledata"; version="0.34.0"; sha256="1gkjsh0xyn27jrxldkcgyvwpa2b2l81k96j2cls3y4dm9r39g637"; depends=[affy annotate Biobase PREDA]; }; PWMEnrich_Dmelanogaster_background = derive2 { name="PWMEnrich.Dmelanogaster.background"; version="4.28.0"; sha256="0fagxhzqr2ri1w93yr7ch1x9d55q8305cfj62gcxkzpi61j8nx1y"; depends=[PWMEnrich]; }; @@ -157,7 +157,7 @@ in with self; { RLHub = derive2 { name="RLHub"; version="1.0.0"; sha256="1i3i1dp5b04xmkgz6lf3fdk0bag23as4f42pcqncalxavgf3c3vm"; depends=[AnnotationHub ExperimentHub]; }; RMassBankData = derive2 { name="RMassBankData"; version="1.32.0"; sha256="1m268dd3wl92l3vihqijcxy1iif7qw3i3vlqhjq18qmc11i55qp2"; depends=[]; }; RNASeqRData = derive2 { name="RNASeqRData"; version="1.12.0"; sha256="0546d7p29vra6n54ffnjxz0ajb9ih90m01xx3b9p56v2s4x0wia4"; depends=[]; }; - RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.32.0"; sha256="0gcvhqpb0h0d0p2rr4vnh24a2flc4m502gyqb0gikk1sfd4jf6jz"; depends=[Biobase genefilter RNAinteract]; }; + RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.32.0"; sha256="0gcvhqpb0h0d0p2rr4vnh24a2flc4m502gyqb0gikk1sfd4jf6jz"; depends=[Biobase fields gdata genefilter lattice MASS RNAinteract sparseLDA]; }; RNAmodR_Data = derive2 { name="RNAmodR.Data"; version="1.8.0"; sha256="1zinj1m27khxmm6qwdl6zmydw505df2lsdfh4hfrnrp0yhwhp0g0"; depends=[ExperimentHub ExperimentHubData]; }; RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.32.0"; sha256="1bgz3i5x0f3940dk4nynxd4r5ji79rs81fwz9iq8br8srssdb4bg"; depends=[]; }; RRBSdata = derive2 { name="RRBSdata"; version="1.14.0"; sha256="19k7dlllf77ymn84zh22qiv1xhjv6k5i6ss9fa1w7slps17k8l1g"; depends=[BiSeq]; }; @@ -171,17 +171,17 @@ in with self; { RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="20151101.24.0"; sha256="0diaxx1484nq4avmsvqs7w0dcpy36kjllklr9wx4r9zmmw098yyg"; depends=[RTCGA]; }; RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="20151101.24.0"; sha256="09hr3fm8yrdyhzfrwxk59y2fdl2yg449v0na0i6im9as38zki9zb"; depends=[RTCGA]; }; RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="1.14.0"; sha256="1i5hd120jc6h23vxaf5pylnji1jig9ryml1hqrrldw7wnr6iqcl5"; depends=[Biobase]; }; - RcisTarget_hg19_motifDBs_cisbpOnly_500bp = derive2 { name="RcisTarget.hg19.motifDBs.cisbpOnly.500bp"; version="1.14.0"; sha256="06isc22wgwynrx9y55fkaqw6240866k400n8dfmn4pdrx3zwzhra"; depends=[]; }; - ReactomeGSA_data = derive2 { name="ReactomeGSA.data"; version="1.8.0"; sha256="1gpy8hbib6zldi5pwmdiqfy1pg5b4i0s6hv8x41cbryvmgx718bx"; depends=[edgeR limma ReactomeGSA]; }; - RegParallel = derive2 { name="RegParallel"; version="1.12.0"; sha256="1px5j2i7gdsb2ccx556knx4dyr7wibvspgi28ja4qlsb9gn4xnin"; depends=[]; }; - RforProteomics = derive2 { name="RforProteomics"; version="1.31.1"; sha256="1lb990amjy4246v3dy75bby3xbr3as017bi0zbrqda168cm8h5af"; depends=[biocViews MSnbase]; }; + RcisTarget_hg19_motifDBs_cisbpOnly_500bp = derive2 { name="RcisTarget.hg19.motifDBs.cisbpOnly.500bp"; version="1.14.0"; sha256="06isc22wgwynrx9y55fkaqw6240866k400n8dfmn4pdrx3zwzhra"; depends=[data_table]; }; + ReactomeGSA_data = derive2 { name="ReactomeGSA.data"; version="1.8.0"; sha256="1gpy8hbib6zldi5pwmdiqfy1pg5b4i0s6hv8x41cbryvmgx718bx"; depends=[edgeR limma ReactomeGSA Seurat]; }; + RegParallel = derive2 { name="RegParallel"; version="1.12.0"; sha256="1px5j2i7gdsb2ccx556knx4dyr7wibvspgi28ja4qlsb9gn4xnin"; depends=[arm data_table doParallel foreach iterators stringr survival]; }; + RforProteomics = derive2 { name="RforProteomics"; version="1.32.0"; sha256="01vqkdk615r84vwczdvciw3vji4rknj8jgxz38jw2gpvi5pdiray"; depends=[BiocManager biocViews MSnbase R_utils]; }; RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.26.0"; sha256="1r9hac14p4a0696v7n4vvxfnmsp6snvwyh0gz6h2ch7cdnp2ny0d"; depends=[GenomicRanges]; }; RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.26.0"; sha256="0kcqa4zhb8i5104p1qyfdp4h50x60vns4dzr663vyhkcm7y8phhg"; depends=[GenomicRanges]; }; RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="2.2.0"; sha256="06g1ys8daxjjry0zbdhilip529zamj99ing1impxnnr2kv1s3as2"; depends=[GenomicRanges]; }; RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.26.0"; sha256="1m7fvapwqaqfz7sjvapb4s7glcnpf35cxdg4gwi4qpjz3qq6fn95"; depends=[GenomicRanges]; }; RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.26.0"; sha256="1maywqb83036rjw7c6y14vcmlk0kimh54wkjvv1chqkf61a41wyh"; depends=[GenomicRanges]; }; RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.26.0"; sha256="029qlllnvi63jkxj8fhqzp02sl5cay2n046a1ghnwrbjf8ax3qby"; depends=[edgeR]; }; - SBGNview_data = derive2 { name="SBGNview.data"; version="1.8.0"; sha256="1xcicqsyvvgb3bwxzw6pw0xvrhrvswjp5piqmkdqv1d747mci58b"; depends=[]; }; + SBGNview_data = derive2 { name="SBGNview.data"; version="1.8.0"; sha256="1xcicqsyvvgb3bwxzw6pw0xvrhrvswjp5piqmkdqv1d747mci58b"; depends=[bookdown knitr rmarkdown]; }; SCATEData = derive2 { name="SCATEData"; version="1.4.0"; sha256="1zaysac53dv4q2w93bdmmnva5p4h63bp752h3kgik91p77i8vg95"; depends=[ExperimentHub GenomicAlignments GenomicRanges]; }; SCLCBam = derive2 { name="SCLCBam"; version="1.26.0"; sha256="087ypaaqb4a44jk6fqnh8z4i45384zr6riv22z1kwcx3fpybc5zx"; depends=[]; }; SNAData = derive2 { name="SNAData"; version="1.40.0"; sha256="1ng54ccaarbsfqak4gvx680rfpskp90ravif0n0iminqmfm596sg"; depends=[graph]; }; @@ -191,13 +191,13 @@ in with self; { SVM2CRMdata = derive2 { name="SVM2CRMdata"; version="1.26.0"; sha256="0k6zznv9ai9ib011yq48zzpdk8qik5ms9388dcw4k90zirnmd4ii"; depends=[]; }; SimBenchData = derive2 { name="SimBenchData"; version="1.2.0"; sha256="01k5p00lrczk7xww7xkj880aj5x14sgwbvgl7gmqrzqw69x0d3ns"; depends=[ExperimentHub S4Vectors]; }; Single_mTEC_Transcriptomes = derive2 { name="Single.mTEC.Transcriptomes"; version="1.22.0"; sha256="0vgf7pl31vdmn5wbm7jhbbhv46bi3p1fb1cgzi2lnzg1m5y117wd"; depends=[]; }; - SingleCellMultiModal = derive2 { name="SingleCellMultiModal"; version="1.6.0"; sha256="1gbf52bs87ypszhj7a6v7ggbqznbfj77p0xy17aygnqlpg1rls43"; depends=[AnnotationHub BiocFileCache BiocGenerics ExperimentHub HDF5Array MultiAssayExperiment S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + SingleCellMultiModal = derive2 { name="SingleCellMultiModal"; version="1.6.0"; sha256="1gbf52bs87ypszhj7a6v7ggbqznbfj77p0xy17aygnqlpg1rls43"; depends=[AnnotationHub BiocFileCache BiocGenerics ExperimentHub HDF5Array Matrix MultiAssayExperiment S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; SingleMoleculeFootprintingData = derive2 { name="SingleMoleculeFootprintingData"; version="1.2.0"; sha256="1knajc7bjiylbkdz97vcs0m7m9m2yvzp6pilglkxnrrqjc9r2d86"; depends=[ExperimentHub]; }; SomatiCAData = derive2 { name="SomatiCAData"; version="1.32.0"; sha256="0x5ygnc4bgqqwap1919hw69hmy3d3r5svyssihrhqp9a3jp55yag"; depends=[]; }; SomaticCancerAlterations = derive2 { name="SomaticCancerAlterations"; version="1.30.0"; sha256="0wwphjr94kavb45xhsjfhqcyjisanl511in4kn3din1m291xsl3m"; depends=[GenomicRanges IRanges S4Vectors]; }; SpikeIn = derive2 { name="SpikeIn"; version="1.36.0"; sha256="1z04cqp2p445zdnhkblyy4lk0flmq1x1ir32sqn1kds1nkmv0ws8"; depends=[affy]; }; SpikeInSubset = derive2 { name="SpikeInSubset"; version="1.34.0"; sha256="0adzr1072rr2zbwmhzg6h3m00w4dxpz9c3f24hj6gf6w9gzk79a7"; depends=[affy Biobase]; }; - TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.30.0"; sha256="1y1dgnqa3f80x8j8pw02dd4zb40q86v1qp7102lkhnppvb3b3f2j"; depends=[Rsamtools]; }; + TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.30.0"; sha256="1y1dgnqa3f80x8j8pw02dd4zb40q86v1qp7102lkhnppvb3b3f2j"; depends=[Rsamtools xtable]; }; TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.30.0"; sha256="1qymmnvpic4nz93079r5kxb9yi7y6qcjq39rz5mmcp15q73lpfqk"; depends=[]; }; TCGAWorkflowData = derive2 { name="TCGAWorkflowData"; version="1.18.0"; sha256="17iq6g93bxzzgsv255ab68crcr5haim57fxx6shjy8ww2ab6522k"; depends=[SummarizedExperiment]; }; TCGAbiolinksGUI_data = derive2 { name="TCGAbiolinksGUI.data"; version="1.14.0"; sha256="08zmlvycq3jz1zy0715x9f21nf3465c51k7w2jq12sfbap36pmjm"; depends=[]; }; @@ -207,16 +207,16 @@ in with self; { TENxBrainData = derive2 { name="TENxBrainData"; version="1.14.0"; sha256="1fhhsrariacvd63ngvs348q6cvp4kmjfjzsl2k3a4r8ci3y4snzc"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; TENxPBMCData = derive2 { name="TENxPBMCData"; version="1.12.0"; sha256="0gb6ji84zk2shz4y10mcccvamz7840qm21nsw8pczq90g0x2vz1g"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; TENxVisiumData = derive2 { name="TENxVisiumData"; version="1.2.0"; sha256="175mnl0axzhvfp49g4hwplcr0p064yzh77wn30z8m738ckkwz5gr"; depends=[ExperimentHub SpatialExperiment]; }; - TMExplorer = derive2 { name="TMExplorer"; version="1.4.0"; sha256="0l5rs379mg5nwqbfv1kpgqbwjbym82g0wq3354fcvp6w91bskspz"; depends=[BiocFileCache SingleCellExperiment]; }; + TMExplorer = derive2 { name="TMExplorer"; version="1.4.0"; sha256="0l5rs379mg5nwqbfv1kpgqbwjbym82g0wq3354fcvp6w91bskspz"; depends=[BiocFileCache Matrix SingleCellExperiment]; }; TabulaMurisData = derive2 { name="TabulaMurisData"; version="1.12.0"; sha256="1ncv97h21w9qy7gqz25wsayq6y01siaxc5cll4c8r0nsh3hprnjc"; depends=[ExperimentHub]; }; - TabulaMurisSenisData = derive2 { name="TabulaMurisSenisData"; version="1.0.0"; sha256="1apwhg418s3vmqk28smj2ac54dzbayvn9bd8pn5gnqijcziy6j6h"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment SummarizedExperiment]; }; + TabulaMurisSenisData = derive2 { name="TabulaMurisSenisData"; version="1.0.0"; sha256="1apwhg418s3vmqk28smj2ac54dzbayvn9bd8pn5gnqijcziy6j6h"; depends=[AnnotationHub ExperimentHub gdata HDF5Array SingleCellExperiment SummarizedExperiment]; }; TargetScoreData = derive2 { name="TargetScoreData"; version="1.30.0"; sha256="11j7nc0k86qk3jgqhiarwawlzih86s8xdsiwllsnrp8i3ddwfq8x"; depends=[]; }; TargetSearchData = derive2 { name="TargetSearchData"; version="1.32.0"; sha256="11gs90jl3z95b2pp2v2lgfibk0hmkkp6waf9pnhw68kp38iv1n7w"; depends=[]; }; - TimerQuant = derive2 { name="TimerQuant"; version="1.24.0"; sha256="1phyxfdljbx6k7l2lmrzs764yx1y9w4hj415zzpqs3i8skf83pf2"; depends=[]; }; + TimerQuant = derive2 { name="TimerQuant"; version="1.24.0"; sha256="1phyxfdljbx6k7l2lmrzs764yx1y9w4hj415zzpqs3i8skf83pf2"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; }; VariantToolsData = derive2 { name="VariantToolsData"; version="1.18.0"; sha256="0xa3bwjf255ff65fphxn0mn39j1f6f5k8snpbwy0qrrcv6a5ksky"; depends=[BiocGenerics GenomicRanges VariantAnnotation]; }; WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.26.0"; sha256="0857mgrscvdi4r6bzijb411vjh9nprgi0vda3b14rh2kz5py8y5k"; depends=[]; }; WGSmapp = derive2 { name="WGSmapp"; version="1.6.0"; sha256="0vzpvhz4s68jdjpli6pl18y804wdcc1xb8d1lz0lywg2shf2vfhf"; depends=[GenomicRanges]; }; - XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.32.0"; sha256="1xj5sdqvp9zfgk5hk2zqr5jjfym6zv7h94j1kir11pbxy9h4j2i9"; depends=[affy ath1121501cdf tinesath1cdf]; }; + XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.32.0"; sha256="1xj5sdqvp9zfgk5hk2zqr5jjfym6zv7h94j1kir11pbxy9h4j2i9"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; }; adductData = derive2 { name="adductData"; version="1.10.0"; sha256="0bp74p06gskwn2xl1srpnmsq27ajsrlynkzw6fcmvwwjcrzljmnj"; depends=[AnnotationHub ExperimentHub]; }; affycompData = derive2 { name="affycompData"; version="1.32.0"; sha256="1f4c57clh0xzsj3vvx7bv0hdjgj7fj4zfzxbm0cavmp6khvgd6ng"; depends=[affycomp Biobase]; }; affydata = derive2 { name="affydata"; version="1.42.0"; sha256="184zrqgl0hnzqshjjpzqb41nry6c7sxqkj4lxn8217444pqq8i94"; depends=[affy]; }; @@ -229,7 +229,7 @@ in with self; { benchmarkfdrData2019 = derive2 { name="benchmarkfdrData2019"; version="1.8.0"; sha256="1434pf9jrgjpvx1rd50zi8010rzd3kdlj7ryvp1q6ivw9r90mq6j"; depends=[ExperimentHub SummarizedExperiment]; }; beta7 = derive2 { name="beta7"; version="1.32.0"; sha256="0m2mq9slb1yqjhk5y4sqclhm92j7q0a1rkh290j73ql2x90acb5y"; depends=[marray]; }; biotmleData = derive2 { name="biotmleData"; version="1.18.0"; sha256="1hsabj556jsiq3g466fqwq4lfy01bh3riv0c9jms43gd0l414ic8"; depends=[]; }; - biscuiteerData = derive2 { name="biscuiteerData"; version="1.8.0"; sha256="19j4g8fvfmfb3x6bpbx5cs3ad8pv263ga8p9rj266s5dla5yi8jz"; depends=[AnnotationHub ExperimentHub]; }; + biscuiteerData = derive2 { name="biscuiteerData"; version="1.8.0"; sha256="19j4g8fvfmfb3x6bpbx5cs3ad8pv263ga8p9rj266s5dla5yi8jz"; depends=[AnnotationHub curl ExperimentHub]; }; bladderbatch = derive2 { name="bladderbatch"; version="1.32.0"; sha256="1lrx5qx8kj0dzpcqm8091px8zj3snkbjlpwdckyhvf10iyw4mjxy"; depends=[Biobase]; }; blimaTestingData = derive2 { name="blimaTestingData"; version="1.14.0"; sha256="1dx475m12nb010c56h7iadb6g2b1xgvd6q0mqjkp3sqsfgv27cfn"; depends=[]; }; bodymapRat = derive2 { name="bodymapRat"; version="1.10.0"; sha256="1zn08w81pyyd19hrgylzpif7rw7n7qny1bccl566sqc80dqhavgb"; depends=[ExperimentHub SummarizedExperiment]; }; @@ -250,7 +250,7 @@ in with self; { ccdata = derive2 { name="ccdata"; version="1.20.0"; sha256="0s6n8dv91p3g44j7nhsfjyqzbga4akfsr574abdwmkwyz13b37qd"; depends=[]; }; celarefData = derive2 { name="celarefData"; version="1.12.0"; sha256="0vhkhb2i1n62shg608q8k6frraynmxghz1kp961v7fca4lww1i96"; depends=[]; }; celldex = derive2 { name="celldex"; version="1.4.0"; sha256="04w60fx3s3wlirmr65nsz6d7ig48j9fzimdr8kbdqv1g80ivdcq1"; depends=[AnnotationDbi AnnotationHub DelayedArray DelayedMatrixStats ExperimentHub S4Vectors SummarizedExperiment]; }; - chipenrich_data = derive2 { name="chipenrich.data"; version="2.18.0"; sha256="1x400szark90jzfnr1fp7z956vp0bbnhgc5njzmigqw213fb0647"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors]; }; + chipenrich_data = derive2 { name="chipenrich.data"; version="2.18.0"; sha256="1x400szark90jzfnr1fp7z956vp0bbnhgc5njzmigqw213fb0647"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicRanges IRanges readr rtracklayer S4Vectors]; }; chipseqDBData = derive2 { name="chipseqDBData"; version="1.10.0"; sha256="1lv02yn8v3l4h0775dqsbbadv6iv7ln7i58x042avlww2rf3lkp5"; depends=[AnnotationHub ExperimentHub Rsamtools S4Vectors]; }; chromstaRData = derive2 { name="chromstaRData"; version="1.20.0"; sha256="0bpbnsfs44pdwjsgf3vmkgsq0mz46rx13j1d6g69z4yv00m5kp7j"; depends=[]; }; clustifyrdatahub = derive2 { name="clustifyrdatahub"; version="1.4.0"; sha256="1wm0mlzs3k88zqjhz9wg846ngffgvs72s2ixmp3kwpdm4gk1jx3y"; depends=[ExperimentHub]; }; @@ -260,18 +260,18 @@ in with self; { curatedAdipoChIP = derive2 { name="curatedAdipoChIP"; version="1.10.0"; sha256="1mwjw585vn8malbanidvk30gwd5057358ak3669akikxf6wna9cj"; depends=[ExperimentHub SummarizedExperiment]; }; curatedAdipoRNA = derive2 { name="curatedAdipoRNA"; version="1.10.0"; sha256="0k3hhcfs484hxm0jixgs4q29jq9vk90s2zdz2m23inmn8cxv6d5b"; depends=[SummarizedExperiment]; }; curatedBladderData = derive2 { name="curatedBladderData"; version="1.30.0"; sha256="0jv7aflam2gfzj8snf7dly26zq9c6gj764zb6fk0z9lb8wk4arxg"; depends=[affy]; }; - curatedBreastData = derive2 { name="curatedBreastData"; version="2.22.0"; sha256="0jnjhlw3b27521jmbbq4m0lq388m1g09lfhqfri3hbvrayk19pn6"; depends=[Biobase BiocStyle impute]; }; - curatedCRCData = derive2 { name="curatedCRCData"; version="2.26.0"; sha256="0gpkfff5k4mh96d6q5s2iwba7pfkp5wjl3nxhg3sm0vryrj0w8s0"; depends=[BiocGenerics]; }; - curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="3.2.0"; sha256="1k4fjpmgs7dfvf7bkzyb9lmzmw7jj8ayc2y3nbskap6l1xl5qpxb"; depends=[AnnotationHub ExperimentHub mia S4Vectors SummarizedExperiment TreeSummarizedExperiment]; }; + curatedBreastData = derive2 { name="curatedBreastData"; version="2.22.0"; sha256="0jnjhlw3b27521jmbbq4m0lq388m1g09lfhqfri3hbvrayk19pn6"; depends=[Biobase BiocStyle ggplot2 impute XML]; }; + curatedCRCData = derive2 { name="curatedCRCData"; version="2.26.0"; sha256="0gpkfff5k4mh96d6q5s2iwba7pfkp5wjl3nxhg3sm0vryrj0w8s0"; depends=[BiocGenerics nlme]; }; + curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="3.2.1"; sha256="0dd5b3b7fv75rwmv4ipz84nw8zx9pq4q5fd39fyklfdr5n7jm9qq"; depends=[AnnotationHub dplyr ExperimentHub magrittr mia purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect TreeSummarizedExperiment]; }; curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.32.0"; sha256="171m6j6wq5w7n68xzjf34shqhw1360cmzfh5q2al71jsh8lrw77x"; depends=[affy BiocGenerics]; }; - curatedTBData = derive2 { name="curatedTBData"; version="1.0.0"; sha256="0cbs8pkr4zlpvdmq1zsxyh47lkbgpf0ppbv8y653arryb4knficl"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment]; }; + curatedTBData = derive2 { name="curatedTBData"; version="1.0.0"; sha256="0cbs8pkr4zlpvdmq1zsxyh47lkbgpf0ppbv8y653arryb4knficl"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment rlang]; }; curatedTCGAData = derive2 { name="curatedTCGAData"; version="1.16.0"; sha256="0d7id11liv55xj0n8gk0587p6kjwm5k22jgwf1f107y81zigpi3n"; depends=[AnnotationHub ExperimentHub HDF5Array MultiAssayExperiment S4Vectors SummarizedExperiment]; }; davidTiling = derive2 { name="davidTiling"; version="1.34.0"; sha256="1az64q1vcgp2rwlpv79bhz3xjjki07n5x6jc12i5ladxlxb1zrwy"; depends=[Biobase GO_db tilingArray]; }; - depmap = derive2 { name="depmap"; version="1.8.0"; sha256="17zwkbndf1fa8sb5lc500l4s7f8x0zq6si8yb8i28bpk5hvdz737"; depends=[AnnotationHub ExperimentHub]; }; + depmap = derive2 { name="depmap"; version="1.8.0"; sha256="17zwkbndf1fa8sb5lc500l4s7f8x0zq6si8yb8i28bpk5hvdz737"; depends=[AnnotationHub dplyr ExperimentHub]; }; derfinderData = derive2 { name="derfinderData"; version="2.12.0"; sha256="1i8k7yjkkqv7j2qxh46377acgw2zlf7az4fh0v4gl80c1iplzq2j"; depends=[]; }; diffloopdata = derive2 { name="diffloopdata"; version="1.22.0"; sha256="1nhyjbbdspw11kms4hh4bmwa9m91zl1lwxjp20q6nqdb7vr57ra5"; depends=[]; }; diggitdata = derive2 { name="diggitdata"; version="1.26.0"; sha256="04q8n0fap7hasfxnhc0gc4118jsch01j2j614j6dx19frc1g96v4"; depends=[Biobase viper]; }; - dorothea = derive2 { name="dorothea"; version="1.6.0"; sha256="1a5nyxbjrd61mbbrpms8whh4v3qjch21xqf98ahaj5ikpsr1fs7i"; depends=[bcellViper viper]; }; + dorothea = derive2 { name="dorothea"; version="1.6.0"; sha256="1a5nyxbjrd61mbbrpms8whh4v3qjch21xqf98ahaj5ikpsr1fs7i"; depends=[bcellViper dplyr magrittr viper]; }; dressCheck = derive2 { name="dressCheck"; version="0.32.0"; sha256="12s2cd770n229wxa3gnpyxw299xk8s774wfi9mx0h4r65cvj900d"; depends=[Biobase]; }; dyebiasexamples = derive2 { name="dyebiasexamples"; version="1.34.0"; sha256="0cp1l68y79qppnzzs11n57f0hasbyla5prc9nr52iqng4fb0y8ww"; depends=[GEOquery marray]; }; easierData = derive2 { name="easierData"; version="1.0.0"; sha256="05hcnfh3nhkg14fpgzk254472xhxahni4kfmf7xj4pa13yzkvjnl"; depends=[AnnotationHub ExperimentHub SummarizedExperiment]; }; @@ -288,7 +288,7 @@ in with self; { flowPloidyData = derive2 { name="flowPloidyData"; version="1.20.0"; sha256="0jqmaazhn23cqbfz5f55aj1acr3z1vw2a6bhfk85n6npcqvbj1s9"; depends=[]; }; flowWorkspaceData = derive2 { name="flowWorkspaceData"; version="3.6.0"; sha256="0jawkzfrq489mrf535biqrlp1xmg1aawbx71n05kxh06i5nyw3zq"; depends=[]; }; frmaExampleData = derive2 { name="frmaExampleData"; version="1.30.0"; sha256="1dyh4qbw5l99052c7xhrjpn8xzzzqx870gxw1f3xnz7kmvymsqgb"; depends=[]; }; - furrowSeg = derive2 { name="furrowSeg"; version="1.22.0"; sha256="05nn6jlj3z30qz06rdrac1v558176kpgxhaqijmg3amwzinkjlg7"; depends=[EBImage]; }; + furrowSeg = derive2 { name="furrowSeg"; version="1.22.0"; sha256="05nn6jlj3z30qz06rdrac1v558176kpgxhaqijmg3amwzinkjlg7"; depends=[abind dplyr EBImage locfit tiff]; }; gageData = derive2 { name="gageData"; version="2.32.0"; sha256="18kj4c5p9gw0kvx9r71hfb2hn1xyxjny0j3z5shcy762xs17jxb7"; depends=[]; }; gaschYHS = derive2 { name="gaschYHS"; version="1.32.0"; sha256="0x1vn8mk04j5aslhaxnfa17iqhz68m4yxjs9a5vmbry10lzz1r97"; depends=[Biobase]; }; gatingMLData = derive2 { name="gatingMLData"; version="2.34.0"; sha256="1qmmaqqa61gmw98ph3mz7pmhbah775bndy436i1vnbyv54r2qi8k"; depends=[]; }; @@ -330,7 +330,7 @@ in with self; { miRNATarget = derive2 { name="miRNATarget"; version="1.32.0"; sha256="067bcdyhqrrym2sz854dw2qpmabfp1yf2iryhpkbfk9b8966b9yv"; depends=[Biobase]; }; miRcompData = derive2 { name="miRcompData"; version="1.24.0"; sha256="1gb8zx82dlfqhdl8yy1p0l756qs2lldnlm05xk6r4k46wz937jw9"; depends=[]; }; microRNAome = derive2 { name="microRNAome"; version="1.16.0"; sha256="1y6g5i8x2ylxrr6k80kg92a04isfr7c3w7zi01chf1fpsdxjimjn"; depends=[SummarizedExperiment]; }; - microbiomeDataSets = derive2 { name="microbiomeDataSets"; version="1.2.0"; sha256="0pi15jk2k2nzcylh45mklz7id556ljqhx1fdcc04hrgw7n96c1ks"; depends=[BiocGenerics Biostrings ExperimentHub MultiAssayExperiment SummarizedExperiment TreeSummarizedExperiment]; }; + microbiomeDataSets = derive2 { name="microbiomeDataSets"; version="1.2.0"; sha256="0pi15jk2k2nzcylh45mklz7id556ljqhx1fdcc04hrgw7n96c1ks"; depends=[ape BiocGenerics Biostrings ExperimentHub MultiAssayExperiment SummarizedExperiment TreeSummarizedExperiment]; }; minfiData = derive2 { name="minfiData"; version="0.40.0"; sha256="12lnn43l6mdk4rbcihd68hsz0rqgi005zwih5wqx1jp400g2kd07"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; }; minfiDataEPIC = derive2 { name="minfiDataEPIC"; version="1.20.0"; sha256="0jc1mqw2ah95ai10xl8m62gs38c88qzrsx4lkcg1w03dqxky08qj"; depends=[IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest minfi]; }; minionSummaryData = derive2 { name="minionSummaryData"; version="1.24.0"; sha256="1ldwmxhs7sg6k30prsa88hkxwmb3sf8ik2zv83j020cqxjlwr6xv"; depends=[]; }; @@ -340,7 +340,7 @@ in with self; { msd16s = derive2 { name="msd16s"; version="1.14.0"; sha256="02mn8pjxqfy9rjc6rdac3in2iqmy7x6lkb8cag3zhmx6z98b8lxv"; depends=[Biobase metagenomeSeq]; }; msdata = derive2 { name="msdata"; version="0.34.0"; sha256="066ss2cvqmisxw1sslz04a0izq2vmpgvlg00v8wynv7pmq1783w2"; depends=[]; }; msigdb = derive2 { name="msigdb"; version="1.2.0"; sha256="1i9c4h52z64kma1ms7qcvp3w6xrn2cmcrm389837znscghcm60mx"; depends=[AnnotationDbi AnnotationHub ExperimentHub GSEABase org_Hs_eg_db org_Mm_eg_db]; }; - msqc1 = derive2 { name="msqc1"; version="1.22.0"; sha256="0r0aj6x67ys5bxxfwc8cybkqnfl226ypgz5zhs6d701y8py7c3mv"; depends=[]; }; + msqc1 = derive2 { name="msqc1"; version="1.22.0"; sha256="0r0aj6x67ys5bxxfwc8cybkqnfl226ypgz5zhs6d701y8py7c3mv"; depends=[lattice]; }; mtbls2 = derive2 { name="mtbls2"; version="1.24.0"; sha256="1kbpnxizzz42inj6g1s4xgq2wmk53zkvpvgdkwvljxzavr8znjl6"; depends=[]; }; muscData = derive2 { name="muscData"; version="1.8.0"; sha256="1m263nykpxzl6xqvx8s7iadmfn4ammfvh2h0cdrk01vw4m4llywd"; depends=[ExperimentHub SingleCellExperiment]; }; mvoutData = derive2 { name="mvoutData"; version="1.30.0"; sha256="059y5iqbgav4b0sxdqjq6a0nx4c9wnxny1amz5bda4s3ragvn7vh"; depends=[affy Biobase lumi]; }; @@ -353,7 +353,7 @@ in with self; { pasilla = derive2 { name="pasilla"; version="1.22.0"; sha256="0jgphpwm5z1rzhcqbpzrhyfynjg5p8lb46m2l9ffmxbwi899i0qh"; depends=[]; }; pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.32.0"; sha256="1zxbcf83hsfzkps5ms46nj3g5ym532zncwlfna95kmw12xc9a90w"; depends=[]; }; pcxnData = derive2 { name="pcxnData"; version="2.16.0"; sha256="05nnpjnci3q2g1rmmmv8vjyzjylx4pzi42p71b95ff2apifbhk95"; depends=[]; }; - pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.32.0"; sha256="0bg7r5101xayyqbb1m4xcnq5iz63h3jl7v8v2s2ma07yaxix9w7x"; depends=[Biostrings IRanges oligo oligoClasses S4Vectors]; }; + pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.32.0"; sha256="0bg7r5101xayyqbb1m4xcnq5iz63h3jl7v8v2s2ma07yaxix9w7x"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; pepDat = derive2 { name="pepDat"; version="1.14.0"; sha256="1l6cp2w22pywvdkzra8ifwxf4s5v47hpf5ljp97k34wpsrh7cws4"; depends=[GenomicRanges]; }; plasFIA = derive2 { name="plasFIA"; version="1.22.0"; sha256="118fch06a609gp799dsym3k14zspxdxzd9ck5jjpf8b3pf17ly9y"; depends=[proFIA]; }; plotgardenerData = derive2 { name="plotgardenerData"; version="1.0.0"; sha256="0fad3v1gh0g595zk1vabns8jfhb9h1qnlqynrjq50hrgg1vdljgw"; depends=[]; }; @@ -365,16 +365,16 @@ in with self; { prostateCancerStockholm = derive2 { name="prostateCancerStockholm"; version="1.22.0"; sha256="0jr248zkbsqp8sidnf3yl8f53aqrp5di574ymgmqxmqdxc72pd67"; depends=[Biobase]; }; prostateCancerTaylor = derive2 { name="prostateCancerTaylor"; version="1.22.0"; sha256="0s1jk2wj514rn43l13rw8k3y3phsiif3dw5pn84cqs47zwkb7q7q"; depends=[Biobase]; }; prostateCancerVarambally = derive2 { name="prostateCancerVarambally"; version="1.22.0"; sha256="1jj3qa795q75s46brq67hr8vkpzdxgc05wi3i564y4k8d08gl0xl"; depends=[Biobase]; }; - ptairData = derive2 { name="ptairData"; version="1.2.0"; sha256="13dqn720svg74q7fn6wvplcsdjpjlr8dj83ncqlsvddmyscyyclk"; depends=[rhdf5]; }; + ptairData = derive2 { name="ptairData"; version="1.2.0"; sha256="13dqn720svg74q7fn6wvplcsdjpjlr8dj83ncqlsvddmyscyyclk"; depends=[rhdf5 signal]; }; pumadata = derive2 { name="pumadata"; version="2.30.0"; sha256="184xrjjm4smgrfj18w63qq1p7f0dmn2qvf3y3mym1s6r2z00r73s"; depends=[Biobase oligo puma]; }; pwrEWAS_data = derive2 { name="pwrEWAS.data"; version="1.8.0"; sha256="15zkxp1wpnxi0g15x9ym1syfg3q5scvmpxq3zj5cs37z60y9gb7d"; depends=[ExperimentHub]; }; - qPLEXdata = derive2 { name="qPLEXdata"; version="1.12.0"; sha256="0dw6dicy7srlx5nxla76k338ki4aan54h3rnrqmyd7h3pp5svx09"; depends=[MSnbase qPLEXanalyzer]; }; + qPLEXdata = derive2 { name="qPLEXdata"; version="1.12.0"; sha256="0dw6dicy7srlx5nxla76k338ki4aan54h3rnrqmyd7h3pp5svx09"; depends=[dplyr knitr MSnbase qPLEXanalyzer]; }; rRDPData = derive2 { name="rRDPData"; version="1.14.0"; sha256="096wasx4xap4jvcziqr175qq84kz0yzy6v2ji618r6cflnlfrd8p"; depends=[rRDP]; }; rcellminerData = derive2 { name="rcellminerData"; version="2.16.0"; sha256="1yany4zkk72kxrqzy27azxfnl6mkrf02yby1gizixn04mqzbjl1a"; depends=[Biobase]; }; restfulSEData = derive2 { name="restfulSEData"; version="1.16.0"; sha256="1bx41xwxnvx6712wsy5qljji2w3wiybvddkxic8xc9l2hrcmfhrz"; depends=[ExperimentHub SummarizedExperiment]; }; rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.32.0"; sha256="0k2klx4rpyzcq346c3ak2lf6w47zkhnhiqn4rs70xnxnsbjn2ca5"; depends=[]; }; sampleClassifierData = derive2 { name="sampleClassifierData"; version="1.18.0"; sha256="12k7xhd2axmcpmv970xbhx5r9b0jdmkxxqm01a0v2jfx3imzz9jb"; depends=[SummarizedExperiment]; }; - scATAC_Explorer = derive2 { name="scATAC.Explorer"; version="1.0.0"; sha256="16qscpjbbphrd1qfp85r9bw8v98866kzsf20fk270m2aq378y4i8"; depends=[BiocFileCache S4Vectors SingleCellExperiment]; }; + scATAC_Explorer = derive2 { name="scATAC.Explorer"; version="1.0.0"; sha256="16qscpjbbphrd1qfp85r9bw8v98866kzsf20fk270m2aq378y4i8"; depends=[BiocFileCache data_table Matrix S4Vectors SingleCellExperiment]; }; scRNAseq = derive2 { name="scRNAseq"; version="2.8.0"; sha256="19caas79yarf3vww60bnn92v9ns82pawqbbw78kmy0x94hvsfdbk"; depends=[AnnotationDbi AnnotationHub BiocGenerics ensembldb ExperimentHub GenomicFeatures GenomicRanges S4Vectors SingleCellExperiment SummarizedExperiment]; }; scTHI_data = derive2 { name="scTHI.data"; version="1.6.0"; sha256="0n794kicpylibqgi4z9mwdgmk5ni3yhqzaqcdr2mij844s079fx4"; depends=[]; }; scanMiRData = derive2 { name="scanMiRData"; version="1.0.0"; sha256="0z6nl4w4r8m1mara0zyzlg7xx6y9fa8psvln0695wvpxzmps4y9h"; depends=[scanMiR]; }; @@ -383,27 +383,27 @@ in with self; { seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.30.0"; sha256="04m6azyswyglh2lvikk6xhnn2449p6vj2zhny1lpcg7j4x8msdvm"; depends=[]; }; seqc = derive2 { name="seqc"; version="1.28.0"; sha256="1iz35c3k8cr1080yi6cmjr42hwigfwjz5ydn36n6yy41n1s988za"; depends=[Biobase]; }; serumStimulation = derive2 { name="serumStimulation"; version="1.30.0"; sha256="1zn0q5zxdzfkkgv8n3q5nyxsj6yrv3chhyivggzxrjk942anl4rg"; depends=[]; }; - sesameData = derive2 { name="sesameData"; version="1.12.0"; sha256="1kr5vn4rw1ncnvbxx3j2amqqzsddzwy79qlpzqxp8jmzydqfamxj"; depends=[AnnotationHub ExperimentHub]; }; + sesameData = derive2 { name="sesameData"; version="1.12.0"; sha256="1kr5vn4rw1ncnvbxx3j2amqqzsddzwy79qlpzqxp8jmzydqfamxj"; depends=[AnnotationHub curl ExperimentHub rmarkdown]; }; seventyGeneData = derive2 { name="seventyGeneData"; version="1.30.0"; sha256="0ckip0hw3xwf48iqschdwrlx4yr5wnyf7iycxfbrc2cz7zsbgp5n"; depends=[]; }; shinyMethylData = derive2 { name="shinyMethylData"; version="1.14.0"; sha256="0hb1ahn1c613iz6ds39jgpa6aw0wgl0pv5f9gai1fp1zbqc44r6p"; depends=[]; }; - signatureSearchData = derive2 { name="signatureSearchData"; version="1.8.0"; sha256="13xfdg3si14zmrbib691301hhxxj3d3xyfkab5l4skspzgpd64cx"; depends=[affy Biobase ExperimentHub limma rhdf5 signatureSearch]; }; + signatureSearchData = derive2 { name="signatureSearchData"; version="1.8.0"; sha256="13xfdg3si14zmrbib691301hhxxj3d3xyfkab5l4skspzgpd64cx"; depends=[affy Biobase dplyr ExperimentHub limma magrittr R_utils rhdf5 signatureSearch]; }; simpIntLists = derive2 { name="simpIntLists"; version="1.30.0"; sha256="0q2lqfhsjncdj42hblrh389j2m47x26nn58s31s1448pddhrp7z1"; depends=[]; }; spatialDmelxsim = derive2 { name="spatialDmelxsim"; version="1.0.0"; sha256="1h5crcjrzapj5j31285ana48g3b2iscxwlzxxdx9i03jsl39dlp8"; depends=[ExperimentHub SummarizedExperiment]; }; - spatialLIBD = derive2 { name="spatialLIBD"; version="1.6.0"; sha256="0c1ayv3mf31smmqfys85xjpadkavjixw545gkalibvxrkxmq0qb3"; depends=[AnnotationHub BiocFileCache ExperimentHub IRanges S4Vectors scater SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + spatialLIBD = derive2 { name="spatialLIBD"; version="1.6.0"; sha256="0c1ayv3mf31smmqfys85xjpadkavjixw545gkalibvxrkxmq0qb3"; depends=[AnnotationHub benchmarkme BiocFileCache cowplot DT ExperimentHub fields ggplot2 golem IRanges jsonlite plotly png Polychrome RColorBrewer S4Vectors scater sessioninfo shiny shinyWidgets SingleCellExperiment SpatialExperiment SummarizedExperiment tibble viridisLite]; }; spqnData = derive2 { name="spqnData"; version="1.6.0"; sha256="0dwmgwz88g8fzpa2nl2zs4y32wrlf4ca142d8siak14wl089nm4y"; depends=[SummarizedExperiment]; }; stemHypoxia = derive2 { name="stemHypoxia"; version="1.30.0"; sha256="05jly60gg5xr9511jlymzbpjysapfz2qq81rxhdz7cjbjkkgvykr"; depends=[]; }; stjudem = derive2 { name="stjudem"; version="1.34.0"; sha256="005wy7b8naaph9krsdw234sk8fprccclnj7y4rfrs2f3lbrw4b2g"; depends=[]; }; synapterdata = derive2 { name="synapterdata"; version="1.31.0"; sha256="03bdx8a1hrnlbcfq92d2yrjydw978pifbgr257r55p15khkigl86"; depends=[]; }; - systemPipeRdata = derive2 { name="systemPipeRdata"; version="1.22.0"; sha256="09p653i4drnfjvx3kd20f4jg7lw1254f44qknl3ghiqppa6rz9g9"; depends=[BiocGenerics GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer ShortRead]; }; + systemPipeRdata = derive2 { name="systemPipeRdata"; version="1.22.0"; sha256="09p653i4drnfjvx3kd20f4jg7lw1254f44qknl3ghiqppa6rz9g9"; depends=[BiocGenerics GenomicFeatures GenomicRanges IRanges jsonlite remotes Rsamtools rtracklayer ShortRead]; }; tartare = derive2 { name="tartare"; version="1.8.0"; sha256="0zaiy4wkikrcx2lc8mcsikpfp8yz3l17bd1z1l0g9r41ixysq105"; depends=[AnnotationHub ExperimentHub]; }; - tcgaWGBSData_hg19 = derive2 { name="tcgaWGBSData.hg19"; version="1.12.0"; sha256="1kmh4iyh2h7vc1mlwb3sridn4nwkqdschz5md5dk53mxkn2wxcmi"; depends=[bsseq ExperimentHub]; }; + tcgaWGBSData_hg19 = derive2 { name="tcgaWGBSData.hg19"; version="1.12.0"; sha256="1kmh4iyh2h7vc1mlwb3sridn4nwkqdschz5md5dk53mxkn2wxcmi"; depends=[bsseq ExperimentHub knitr]; }; timecoursedata = derive2 { name="timecoursedata"; version="1.4.0"; sha256="007dh5wmjd6s7jr0p8af6irm25my20j1ifxhm6rxscgijskqb410"; depends=[SummarizedExperiment]; }; tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.32.0"; sha256="1pa1mzb03p8wfrihcpvqhp2zpzhf0hg5amwmivr4926x26ivkbsj"; depends=[]; }; tinesath1probe = derive2 { name="tinesath1probe"; version="1.32.0"; sha256="00bhw370f4i866w08fia3acp7whxz7p167y444jaavll29bhqgsy"; depends=[AnnotationDbi]; }; tissueTreg = derive2 { name="tissueTreg"; version="1.14.0"; sha256="0ldgq526izrvazrsbwhnvq6yqc2zr6d9mvq87jvsmwskxswyrpva"; depends=[]; }; tofsimsData = derive2 { name="tofsimsData"; version="1.22.0"; sha256="1iqp70zr2i3p0pvzblsqqy7v949n5ankxp133zyhm88wscqxjwiv"; depends=[]; }; topdownrdata = derive2 { name="topdownrdata"; version="1.16.0"; sha256="1s4yskh6jy49dipbb7ixrb4dbl5d8a33d1kb5j99vgimj8rq9gsy"; depends=[topdownr]; }; - tuberculosis = derive2 { name="tuberculosis"; version="1.0.0"; sha256="1bnimnik486r6g6mx0frigg5iwm3x4zbwsrsfq59s05mzix7silm"; depends=[AnnotationHub ExperimentHub S4Vectors SummarizedExperiment]; }; + tuberculosis = derive2 { name="tuberculosis"; version="1.0.0"; sha256="1bnimnik486r6g6mx0frigg5iwm3x4zbwsrsfq59s05mzix7silm"; depends=[AnnotationHub dplyr ExperimentHub magrittr purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.32.0"; sha256="1zi2ic6yhwh3swp473xy540wg74g98bs4s820yzga9aqbcp7g5h2"; depends=[Biobase]; }; tximportData = derive2 { name="tximportData"; version="1.22.0"; sha256="0fyy487874h2aqb5lvjndn8fgs708m3lv4am42xcjpky98b3zl71"; depends=[]; }; vulcandata = derive2 { name="vulcandata"; version="1.16.0"; sha256="0apb9s4hm3a2hqwa81l58havrdwx2b8wl52xcb62b398f9mblhgb"; depends=[]; }; diff --git a/pkgs/development/r-modules/bioc-packages.nix b/pkgs/development/r-modules/bioc-packages.nix index e771b2da216f..81b4a27ab9e3 100644 --- a/pkgs/development/r-modules/bioc-packages.nix +++ b/pkgs/development/r-modules/bioc-packages.nix @@ -47,7 +47,7 @@ in with self; { AnVILPublish = derive2 { name="AnVILPublish"; version="1.4.1"; sha256="0jvh22kz9mg4r49mbzvbvzbn58lzj5mvk7qb4pizn4sd8xsbvmyq"; depends=[AnVIL httr jsonlite readr rmarkdown whisker yaml]; }; Anaquin = derive2 { name="Anaquin"; version="2.18.0"; sha256="0b9clpqy2jfhign30nab1369xswrkmqm6dx14mf6wjrvcl9xpm2s"; depends=[DESeq2 ggplot2 knitr locfit plyr qvalue ROCR]; }; AneuFinder = derive2 { name="AneuFinder"; version="1.22.0"; sha256="0xn8952fkchhx7m8dam6gjy86j551xp1cs67510s1qrmfgzpkjp0"; depends=[AneuFinderData bamsignals BiocGenerics Biostrings cowplot DNAcopy doParallel ecp foreach GenomeInfoDb GenomicAlignments GenomicRanges ggdendro ggplot2 ggrepel IRanges mclust ReorderCluster reshape2 Rsamtools S4Vectors]; }; - AnnotationDbi = derive2 { name="AnnotationDbi"; version="1.56.1"; sha256="1svh5zcb7ymz463z5641l2cvzniswxasjjix2plfhqs0yqf1j9qg"; depends=[Biobase BiocGenerics DBI IRanges KEGGREST RSQLite S4Vectors]; }; + AnnotationDbi = derive2 { name="AnnotationDbi"; version="1.56.2"; sha256="01zwq14msbbwzxv8rgpmyr74ymvhq0vnmxkxxwd886iac5vjlgi8"; depends=[Biobase BiocGenerics DBI IRanges KEGGREST RSQLite S4Vectors]; }; AnnotationFilter = derive2 { name="AnnotationFilter"; version="1.18.0"; sha256="15fp1228yb06jm5cblvhw3qv9mlpbjfggaz2nvi3p46mby1vs64w"; depends=[GenomicRanges lazyeval]; }; AnnotationForge = derive2 { name="AnnotationForge"; version="1.36.0"; sha256="02wvni5q560idi6677g5f4md73z4qzjl5yycxv5dbvgbl2picisz"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl RSQLite S4Vectors XML]; }; AnnotationHub = derive2 { name="AnnotationHub"; version="3.2.0"; sha256="0ks8yzvvs2r66pb9687mkskf0n3wgvp7h92k83b0a1q32sca5wng"; depends=[AnnotationDbi BiocFileCache BiocGenerics BiocManager BiocVersion curl dplyr httr interactiveDisplayBase rappdirs RSQLite S4Vectors yaml]; }; @@ -86,7 +86,7 @@ in with self; { BasicSTARRseq = derive2 { name="BasicSTARRseq"; version="1.22.0"; sha256="14rs6fk15w2rddyqppf32n0c02gw83b7c8cpmsx11xz6fx7ib5k6"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges S4Vectors]; }; BatchQC = derive2 { name="BatchQC"; version="1.22.0"; sha256="0rbpvgxzikpyhxbxksg7vwmy2r0gzw103dykx1awbxkkvrkhl7kf"; depends=[corpcor ggvis gplots heatmaply knitr limma Matrix matrixStats MCMCpack moments pander reshape2 rmarkdown shiny sva]; }; BayesKnockdown = derive2 { name="BayesKnockdown"; version="1.20.0"; sha256="08sy0vv1mrbjvvf3ddgxc0ixrbi2mka2g8gjxmx3ylsb6w7vxcy4"; depends=[Biobase]; }; - BayesSpace = derive2 { name="BayesSpace"; version="1.4.0"; sha256="0dijc66a55mjm9clpx0668by3x7k57ihywjyf042sz8b8pf9ijd9"; depends=[assertthat BiocFileCache BiocSingular coda DirichletReg ggplot2 Matrix mclust purrr Rcpp RcppArmadillo RcppDist RcppProgress RCurl rhdf5 S4Vectors scales scater scran SingleCellExperiment SummarizedExperiment xgboost]; }; + BayesSpace = derive2 { name="BayesSpace"; version="1.4.1"; sha256="1nif6d4hb9zpfx9lczs6j6xniiv0spq6s39jvrs1qazdyysmf4qy"; depends=[assertthat BiocFileCache BiocSingular coda DirichletReg ggplot2 Matrix mclust purrr Rcpp RcppArmadillo RcppDist RcppProgress RCurl rhdf5 S4Vectors scales scater scran SingleCellExperiment SummarizedExperiment xgboost]; }; BeadDataPackR = derive2 { name="BeadDataPackR"; version="1.46.0"; sha256="004cppgdy79fqw2szkgkxir0rxvn91bmfrq4g20sdr7cvh8kpfyi"; depends=[]; }; BgeeCall = derive2 { name="BgeeCall"; version="1.10.0"; sha256="0rbbl8m48qcvl26lnf27jq108p7pi84m9ac3qcpjc0ax5wywbv16"; depends=[biomaRt Biostrings data_table dplyr GenomicFeatures jsonlite rhdf5 rslurm rtracklayer sjmisc tximport]; }; BgeeDB = derive2 { name="BgeeDB"; version="2.20.0"; sha256="0pjymal01sjl5dc37g66wykgxnksarlbvwnbvhg7w0i7y92zavqk"; depends=[Biobase curl data_table digest dplyr graph R_utils RCurl RSQLite tidyr topGO]; }; @@ -204,7 +204,7 @@ in with self; { ChIPanalyser = derive2 { name="ChIPanalyser"; version="1.16.0"; sha256="1ibbfsl2gz5634rljy4bin9h9g5bxzig3z65bvayp4ldmfiz91dm"; depends=[BiocManager Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges RcppRoll ROCR rtracklayer S4Vectors]; }; ChIPexoQual = derive2 { name="ChIPexoQual"; version="1.18.0"; sha256="1hh3mhfcngyx7cpzns8mjqviy8vfzrvxpv6nyizflpfmsr39mxfk"; depends=[BiocParallel biovizBase broom data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 hexbin IRanges RColorBrewer rmarkdown Rsamtools S4Vectors scales viridis]; }; ChIPpeakAnno = derive2 { name="ChIPpeakAnno"; version="3.28.0"; sha256="05fbq8zvww1nlyykrri0hf4248i1i7w5cr453giagmjq7lgg4v3b"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings DBI dplyr ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 graph InteractionSet IRanges KEGGREST matrixStats multtest RBGL regioneR Rsamtools rtracklayer S4Vectors SummarizedExperiment VennDiagram]; }; - ChIPseeker = derive2 { name="ChIPseeker"; version="1.30.0"; sha256="1x8px8ylc231g87rd48kmy9y36h26rldbmqjkcj4mgaldvbsj0rp"; depends=[AnnotationDbi BiocGenerics boot dplyr enrichplot GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gtools IRanges magrittr plotrix RColorBrewer rtracklayer S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene]; }; + ChIPseeker = derive2 { name="ChIPseeker"; version="1.30.2"; sha256="1nr5p1h9131rvbpnh2kizzx9q6f4ycq6rzxy1yqg2pczqcg7hy4x"; depends=[AnnotationDbi BiocGenerics boot dplyr enrichplot GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gtools IRanges magrittr plotrix RColorBrewer rtracklayer S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene]; }; ChIPseqR = derive2 { name="ChIPseqR"; version="1.48.0"; sha256="05hxxqmjxpry0j80kyz2400azni0dc64ps7cxfi11h243japhbsf"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; }; ChIPsim = derive2 { name="ChIPsim"; version="1.48.0"; sha256="1pdsfsk8c92pz22qz2x5rsmk7j9v3dw9c1p96il533ycjafq1xqd"; depends=[Biostrings IRanges ShortRead XVector]; }; ChemmineOB = derive2 { name="ChemmineOB"; version="1.32.0"; sha256="14zwckgg8wqcdjmdk3i8p7f82df4izipq2lfck98l4i0z2p3y0f3"; depends=[BH BiocGenerics Rcpp zlibbioc]; }; @@ -294,7 +294,7 @@ in with self; { DominoEffect = derive2 { name="DominoEffect"; version="1.14.0"; sha256="13lksli177d11rw5692bc5qmp0x5bfkasriccaa28hklnqmbyjsc"; depends=[AnnotationDbi biomaRt Biostrings data_table GenomeInfoDb GenomicRanges IRanges SummarizedExperiment VariantAnnotation]; }; Doscheda = derive2 { name="Doscheda"; version="1.16.0"; sha256="0lpmxnid43fvi41mc5r89mvvxn19baja8f4zr38j3dkb126dr476"; depends=[affy calibrate corrgram drc DT ggplot2 gridExtra httr jsonlite limma matrixStats prodlim readxl reshape2 shiny shinydashboard stringr vsn]; }; DriverNet = derive2 { name="DriverNet"; version="1.34.0"; sha256="1qfjg5x3m2z5yjm0lgnw7rqhclic2fgzcdnq0nnwlqyp4i5na10q"; depends=[]; }; - DropletUtils = derive2 { name="DropletUtils"; version="1.14.0"; sha256="1zi9pm0ns7w9ga9567rsbm35gyl4fpgic0fvsj5a9ppagqw7ag8z"; depends=[beachmat BH BiocGenerics BiocParallel DelayedArray DelayedMatrixStats dqrng edgeR HDF5Array Matrix R_utils Rcpp rhdf5 Rhdf5lib S4Vectors scuttle SingleCellExperiment SummarizedExperiment]; }; + DropletUtils = derive2 { name="DropletUtils"; version="1.14.1"; sha256="1nfv5d04jzbd5nv1fazj5qchv59s4cds698r44zfw36z6v83w2d6"; depends=[beachmat BH BiocGenerics BiocParallel DelayedArray DelayedMatrixStats dqrng edgeR GenomicRanges HDF5Array IRanges Matrix R_utils Rcpp rhdf5 Rhdf5lib S4Vectors scuttle SingleCellExperiment SummarizedExperiment]; }; DrugVsDisease = derive2 { name="DrugVsDisease"; version="2.36.0"; sha256="19plcigawh4c4z1dxn1c0kxbdnrsz2fgfyvmcnj0025xscdk4zay"; depends=[affy annotate ArrayExpress BiocGenerics biomaRt cMap2data DrugVsDiseasedata GEOquery hgu133a_db hgu133a2_db hgu133plus2_db limma qvalue RUnit xtable]; }; Dune = derive2 { name="Dune"; version="1.6.0"; sha256="0n267fw1yna1fpg5gcilmf0ijavy2c1ry0wcccp2cdzhs77cx7fi"; depends=[aricode BiocParallel dplyr gganimate ggplot2 magrittr purrr RColorBrewer SummarizedExperiment tidyr]; }; DynDoc = derive2 { name="DynDoc"; version="1.72.0"; sha256="1ix1kcjrmbv7hqsmihgazh7igrh13bxhgw36ibihh07sflrgf1hm"; depends=[]; }; @@ -339,7 +339,7 @@ in with self; { FamAgg = derive2 { name="FamAgg"; version="1.22.0"; sha256="14lldajnl8ppy3nyy5mn987mvjfgr2vpx5zp6ky8md308rvgay0k"; depends=[BiocGenerics gap igraph kinship2 Matrix survey]; }; FastqCleaner = derive2 { name="FastqCleaner"; version="1.12.0"; sha256="1cw0916qdn1an3wcnx5659q2f22rs78p9m5v2xp9nyp5phjb97pp"; depends=[Biostrings DT htmltools IRanges Rcpp S4Vectors shiny shinyBS ShortRead]; }; FilterFFPE = derive2 { name="FilterFFPE"; version="1.4.0"; sha256="1c9mfhc4hms2f861f71i7hbhnn3s1xlzabcmdjzybwiv16dl139w"; depends=[doParallel foreach GenomicRanges IRanges Rsamtools S4Vectors]; }; - FindIT2 = derive2 { name="FindIT2"; version="1.0.0"; sha256="1kpxkr6qrbhk5a9lg2z0ga6lsb5s9ll9f3cglpyx35494a0d2zp6"; depends=[BiocGenerics BiocParallel dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel glmnet IRanges MultiAssayExperiment patchwork progress purrr qvalue rlang rtracklayer S4Vectors stringr SummarizedExperiment tibble tidyr withr]; }; + FindIT2 = derive2 { name="FindIT2"; version="1.0.1"; sha256="0rg01zhsvjpk2wyx9c5czm8frm4q4kxlc0v75b55dd77l29amvww"; depends=[BiocGenerics BiocParallel dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel glmnet IRanges MultiAssayExperiment patchwork progress purrr qvalue rlang rtracklayer S4Vectors stringr SummarizedExperiment tibble tidyr withr]; }; FindMyFriends = derive2 { name="FindMyFriends"; version="1.23.0"; sha256="0xbhl6ljxb522r5062vv6xdziaaqkkwylmvlymvc5f1grjz0a4z9"; depends=[Biobase BiocGenerics BiocParallel Biostrings digest dplyr filehash ggdendro ggplot2 gtable igraph IRanges kebabs Matrix Rcpp reshape2 S4Vectors]; }; FitHiC = derive2 { name="FitHiC"; version="1.20.0"; sha256="0a3d2bxp98lmbf3i864zgfwxwvxyqfcrh75z9yz7ra7y44pkjr4y"; depends=[data_table fdrtool Rcpp]; }; FlowSOM = derive2 { name="FlowSOM"; version="2.2.0"; sha256="062xrv8li2z849qa8mv5dhafqli6ziz099ikjfvi7v2fr7174p8f"; depends=[BiocGenerics colorRamps ConsensusClusterPlus CytoML dplyr flowCore flowWorkspace ggforce ggnewscale ggplot2 ggpointdensity ggpubr ggrepel igraph magrittr pheatmap RColorBrewer rlang Rtsne scattermore tidyr XML]; }; @@ -580,7 +580,7 @@ in with self; { MSstatsConvert = derive2 { name="MSstatsConvert"; version="1.4.0"; sha256="0p44g7kv2zyknmiki94w0v4zq1qpa2ly17hbfqkfy9c1xql7b38g"; depends=[checkmate data_table log4r stringi]; }; MSstatsLOBD = derive2 { name="MSstatsLOBD"; version="1.2.0"; sha256="0d78hd9ip2amkj5pjmwy376qhzfd46wqmzl38rbm52d946c69sb8"; depends=[ggplot2 minpack_lm Rcpp]; }; MSstatsLiP = derive2 { name="MSstatsLiP"; version="1.0.0"; sha256="1vf3f3yd9sgaqs9asq1x2819wkj2x68086g8hag1ln6q7q5j0xws"; depends=[Biostrings checkmate data_table dplyr factoextra ggplot2 ggpubr gridExtra MSstats MSstatsConvert MSstatsPTM purrr Rcpp scales stringr tibble tidyr tidyverse]; }; - MSstatsPTM = derive2 { name="MSstatsPTM"; version="1.4.0"; sha256="0sizx0001gh609fpi5ivq1pa49sprasbsh39kplcybcidq20qcj7"; depends=[Biostrings checkmate data_table dplyr ggplot2 ggrepel gridExtra MSstats MSstatsConvert MSstatsTMT Rcpp stringr]; }; + MSstatsPTM = derive2 { name="MSstatsPTM"; version="1.4.1"; sha256="0fwriw5hzp0j22c1awv332yb0qazv9w60cgc8j19djzwmsprwvaj"; depends=[Biostrings checkmate data_table dplyr ggplot2 ggrepel gridExtra MSstats MSstatsConvert MSstatsTMT Rcpp stringr]; }; MSstatsQC = derive2 { name="MSstatsQC"; version="2.12.0"; sha256="087lr0maf5kpl642kvvkd9pyakqxy152rzhvrlaj0rxbrfqgxnsw"; depends=[dplyr ggExtra ggplot2 MSnbase plotly qcmetrics]; }; MSstatsQCgui = derive2 { name="MSstatsQCgui"; version="1.14.0"; sha256="0ygw1zrq219grfy6h650icai9khx49fvdbby5cyydrqbp8m64w77"; depends=[dplyr ggExtra gridExtra MSstatsQC plotly shiny]; }; MSstatsSampleSize = derive2 { name="MSstatsSampleSize"; version="1.8.0"; sha256="0ckdy0qy2s2rvh4ijdddkk9calf1s9s0hr52y0kpgr4mb5zrl0jp"; depends=[BiocParallel caret ggplot2 gridExtra MSstats reshape2]; }; @@ -621,7 +621,7 @@ in with self; { MiPP = derive2 { name="MiPP"; version="1.66.0"; sha256="1m42rv20f9cwnr97ckx4lm193zf0kjr2v33fisymyaq5rrl7ppfn"; depends=[Biobase e1071 MASS]; }; MiRaGE = derive2 { name="MiRaGE"; version="1.36.0"; sha256="10laq0b1acsirykb5cjxlpj91lqvmhsd3ammk331njaaczh4mjrx"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager S4Vectors]; }; MicrobiomeProfiler = derive2 { name="MicrobiomeProfiler"; version="1.0.0"; sha256="13awswgm1n30fy73xxlph5aay8a4nkb1gjjzhqy9w7djpm99nw8g"; depends=[clusterProfiler config DT enrichplot ggplot2 golem htmltools magrittr shiny shinycustomloader shinyWidgets]; }; - MicrobiotaProcess = derive2 { name="MicrobiotaProcess"; version="1.6.0"; sha256="1wzr98fzrby12v6843f7l1dc0xcsbg9f1lkdg85qkv9j4c6aji52"; depends=[ape Biostrings coin dplyr foreach ggplot2 ggrepel ggsignif ggstar ggtree magrittr MASS patchwork rlang SummarizedExperiment tibble tidyr tidyselect tidytree treeio vegan zoo]; }; + MicrobiotaProcess = derive2 { name="MicrobiotaProcess"; version="1.6.1"; sha256="1qhj7vr87pl1aliqn38c980jrgaiz8d462pfv8pcb0l5xgfvpndz"; depends=[ape Biostrings coin dplyr foreach ggplot2 ggrepel ggsignif ggstar ggtree magrittr MASS patchwork rlang SummarizedExperiment tibble tidyr tidyselect tidytree treeio vegan zoo]; }; MineICA = derive2 { name="MineICA"; version="1.34.0"; sha256="00pbhbz44dx5gfzzf1drwny4a779zxk4hjavb1fkpg15cm7c152x"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi lumiHumanAll_db marray mclust plyr RColorBrewer Rgraphviz scales xtable]; }; MinimumDistance = derive2 { name="MinimumDistance"; version="1.38.0"; sha256="077prww1k374czkd8dlpy081ki101vpl2gpi4dmjbzzq5q45ld7f"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; }; ModCon = derive2 { name="ModCon"; version="1.2.0"; sha256="1pgvkscvsacm7ag6yyqlpxs6c5vyb3hlmk6gzkiarsc1b29iqhm4"; depends=[data_table]; }; @@ -757,7 +757,7 @@ in with self; { RCASPAR = derive2 { name="RCASPAR"; version="1.40.0"; sha256="0iw17mh880x1pjqs5ffjlc8xicy8qrks8yigb1aiyn4xd00ihf1s"; depends=[]; }; RCM = derive2 { name="RCM"; version="1.10.0"; sha256="082qnzy5q3k5g2qazralj4jwhrdxm1y9xc8dxry5d4l6l6vf77wp"; depends=[alabama edgeR ggplot2 MASS nleqslv phyloseq RColorBrewer reshape2 tensor tseries VGAM]; }; RCSL = derive2 { name="RCSL"; version="1.2.0"; sha256="01v45b42g0gvhz6h0p1j4865l2cm185ai40bf1fcvjd8747850h4"; depends=[ggplot2 igraph NbClust pracma RcppAnnoy Rtsne umap]; }; - RCy3 = derive2 { name="RCy3"; version="2.14.0"; sha256="17jkwbg4ap6nb404hhdaqsy3ixsv8kfvap5m1qdmijw8ip8g64wq"; depends=[base64enc base64url BiocGenerics fs glue graph httr IRdisplay IRkernel RColorBrewer RCurl RJSONIO uchardet uuid XML]; }; + RCy3 = derive2 { name="RCy3"; version="2.14.1"; sha256="1avfplsg0pl6naxbwvwl3r29idq57r6vpiqnhbzfvj28hra4gdqi"; depends=[base64enc base64url BiocGenerics fs glue graph httr IRdisplay IRkernel RColorBrewer RCurl RJSONIO uchardet uuid XML]; }; RCyjs = derive2 { name="RCyjs"; version="2.16.0"; sha256="1xb98gyf847sy5ijv2ka1vsvz64n6fi356qmcgm4k1qhz1jizm6z"; depends=[base64enc BiocGenerics BrowserViz graph httpuv]; }; RDRToolbox = derive2 { name="RDRToolbox"; version="1.44.0"; sha256="1mlfzvn6imnkj2mrma6nr5cm0qdxjca7vy6hlaidicvwn3jz4129"; depends=[MASS rgl]; }; REBET = derive2 { name="REBET"; version="1.12.0"; sha256="19hsykk770jyrvd5lbaybggs4j1f1rnrbcq2mb0cz8w288lh4i5p"; depends=[ASSET]; }; @@ -849,16 +849,16 @@ in with self; { Rmagpie = derive2 { name="Rmagpie"; version="1.50.0"; sha256="0yn1v4z25ifb00xg3mp0ajskv8502yl317pj2j04ax62qny95ykg"; depends=[Biobase e1071 kernlab pamr]; }; RmiR = derive2 { name="RmiR"; version="1.49.0"; sha256="16nwh4a97qvyicm4f102xs52lx8cld0b80fykgil86kkd6v8zlja"; depends=[DBI RmiR_Hs_miRNA]; }; Rmmquant = derive2 { name="Rmmquant"; version="1.12.0"; sha256="0wklqi37jgdfsf26zgfhq0rvb6xvg4v9z197mcwirqp7y1jm8rmm"; depends=[BiocStyle DESeq2 devtools GenomicRanges org_Mm_eg_db Rcpp S4Vectors SummarizedExperiment TBX20BamSubset TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - RnBeads = derive2 { name="RnBeads"; version="2.12.0"; sha256="02zh9zlccipj3776il9szlacg1sm9rfqk62vpmxma2zn5al163a4"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr S4Vectors]; }; + RnBeads = derive2 { name="RnBeads"; version="2.12.2"; sha256="042bh4p567xkwqn0hxqji7mk0lhbh0vxdrrhcpya22yyrs1716d0"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr S4Vectors]; }; RnaSeqSampleSize = derive2 { name="RnaSeqSampleSize"; version="2.4.0"; sha256="04zf30583wdn2q7wnj3hp81sa1h4dhd6yvl22sj0yxdqw919jvrj"; depends=[biomaRt edgeR heatmap3 KEGGREST matlab Rcpp RnaSeqSampleSizeData]; }; Rnits = derive2 { name="Rnits"; version="1.28.0"; sha256="0wzg0wq0kyarl6s8lmmd6nkqfvvph46bvd4wxh5zy94zqbad7q0b"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; }; RpsiXML = derive2 { name="RpsiXML"; version="2.36.0"; sha256="19jc5dhwyy2z1cwbvgvw54v7kkbgh7g0wzy4frxv91zdgaj7wmhy"; depends=[annotate AnnotationDbi Biobase graph hypergraph RBGL XML]; }; Rqc = derive2 { name="Rqc"; version="1.28.0"; sha256="0hcxkrfja0gmd8r2llijdvaw2xiiplk037305inimz0qna6w2071"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings biovizBase GenomicAlignments GenomicFiles ggplot2 IRanges knitr markdown plyr Rcpp reshape2 Rsamtools S4Vectors shiny ShortRead]; }; Rsamtools = derive2 { name="Rsamtools"; version="2.10.0"; sha256="0v6b3j45ivd9f04fpfs1vjwby5pi30mf5683bjxim01vi2krj9yh"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges Rhtslib S4Vectors XVector zlibbioc]; }; - Rsubread = derive2 { name="Rsubread"; version="2.8.0"; sha256="09kd7vl2z9k82ppfzy679hs7d00c60z3w3n6a8wq4z3k3f4glc3s"; depends=[Matrix]; }; + Rsubread = derive2 { name="Rsubread"; version="2.8.1"; sha256="0lpx0dp5570kbrq7v0g573axkhi00qrf38si59vmvnqxhmkvsixn"; depends=[Matrix]; }; Rtpca = derive2 { name="Rtpca"; version="1.4.0"; sha256="05i25sfgdqsnw9ky0p25aix8qrzkirmcl5vvpqrv8bwvs335glm4"; depends=[Biobase dplyr fdrtool ggplot2 pROC tibble tidyr]; }; Rtreemix = derive2 { name="Rtreemix"; version="1.56.0"; sha256="15kr8y8w059bxhl9x7j7qg01b55jsxfmfzgdyxk6l40i3l4i0wh1"; depends=[Biobase graph Hmisc]; }; - S4Vectors = derive2 { name="S4Vectors"; version="0.32.1"; sha256="0if4mmg0wmfh92khpqkn8ydm7rha0wraa0vnjn6fak3rzlz77ncd"; depends=[BiocGenerics]; }; + S4Vectors = derive2 { name="S4Vectors"; version="0.32.2"; sha256="0xrmii2dnwyknpjdiwwjlklgzpbk9q09br27rq5ffz08if9yyk20"; depends=[BiocGenerics]; }; SAIGEgds = derive2 { name="SAIGEgds"; version="1.8.0"; sha256="08jhqpi13kg69nfl425m6rvgyvzfspfylgnzkk1v6v0kaz5876f2"; depends=[gdsfmt Rcpp RcppArmadillo RcppParallel SeqArray SPAtest]; }; SANTA = derive2 { name="SANTA"; version="2.30.0"; sha256="0w0rd0vmjvz98ijk53ikpin7x5acl0yfkb2v7y77ma6lizy70rgl"; depends=[igraph Matrix]; }; SBGNview = derive2 { name="SBGNview"; version="1.8.0"; sha256="17jh1ad1a951r89xd9127c1wv5s4rzd03qq8rh5zjn2zxzpwswr4"; depends=[AnnotationDbi bookdown httr igraph KEGGREST knitr pathview Rdpack rmarkdown rsvg SBGNview_data SummarizedExperiment xml2]; }; @@ -937,7 +937,7 @@ in with self; { SpatialDecon = derive2 { name="SpatialDecon"; version="1.4.3"; sha256="11hb28m7h78cvzz9s545jzssnbxjbhfmdb03rxbvxq1rdh0whljr"; depends=[Biobase GeomxTools Matrix repmis SeuratObject]; }; SpatialExperiment = derive2 { name="SpatialExperiment"; version="1.4.0"; sha256="1jn2xr51hv1pm53pgsilhbwal0bnz7mc17z5plpjxgh7jn9bx4x2"; depends=[BiocFileCache BiocGenerics DropletUtils magick rjson S4Vectors SingleCellExperiment SummarizedExperiment]; }; SpeCond = derive2 { name="SpeCond"; version="1.48.0"; sha256="1mpzf9l7yim59wfg244rzqxm9vb10lp88688p5v2whcv5xx0a34a"; depends=[Biobase fields hwriter mclust RColorBrewer]; }; - Spectra = derive2 { name="Spectra"; version="1.4.0"; sha256="1kgwm040j23mjihym0kg5r9qz4f1ssfvnd3f6m5jasx59wgpv46f"; depends=[BiocGenerics BiocParallel fs IRanges MsCoreUtils ProtGenerics S4Vectors]; }; + Spectra = derive2 { name="Spectra"; version="1.4.1"; sha256="01vaxhk1xz54wxcywnsx8z3qbjchg1i8rv0ks7i2c72sqmamhajc"; depends=[BiocGenerics BiocParallel fs IRanges MsCoreUtils ProtGenerics S4Vectors]; }; SpectralTAD = derive2 { name="SpectralTAD"; version="1.10.0"; sha256="00yx87zkyyzpzkm9slmhs78pqivcfladsrnvh3wwlkgi2rky7qps"; depends=[BiocParallel cluster dplyr GenomicRanges HiCcompare magrittr Matrix PRIMME]; }; SpidermiR = derive2 { name="SpidermiR"; version="1.24.0"; sha256="1mwqfg5vgc262bhjnbhn8yvjgmqyafc9kzln1a5pidpj5gyr757q"; depends=[AnnotationDbi gdata ggplot2 gplots gridExtra httr igraph lattice latticeExtra MAGeCKFlute miRNAtap miRNAtap_db org_Hs_eg_db TCGAbiolinks]; }; SplicingFactory = derive2 { name="SplicingFactory"; version="1.2.0"; sha256="0gdk14591slhwnb6rpnksdirzgd7ga03sqkr3k7wndgk5h6dp2jb"; depends=[SummarizedExperiment]; }; @@ -1107,9 +1107,9 @@ in with self; { biocGraph = derive2 { name="biocGraph"; version="1.56.0"; sha256="0c7r0c1kx22dlwi6d1ldbkkbf53yi0p3vmgbwzrbkn3cina7bcxq"; depends=[BiocGenerics geneplotter graph Rgraphviz]; }; biocViews = derive2 { name="biocViews"; version="1.62.1"; sha256="1v6himzp546dpb990vv0nlya21w8x2x30137rsmahjzg942nzs9r"; depends=[Biobase BiocManager graph RBGL RCurl RUnit XML]; }; biocthis = derive2 { name="biocthis"; version="1.4.0"; sha256="0kh5lmv992v4r5r58x29403cll0zxr9fx4ar81nrzvnch5668v39"; depends=[BiocManager fs glue rlang styler usethis]; }; - biodb = derive2 { name="biodb"; version="1.2.0"; sha256="0q343zbx341xdy634p50k7bj6byv8v2rqzy50nw75a79206pajl4"; depends=[BiocFileCache chk jsonlite lgr lifecycle openssl plyr progress R6 rappdirs Rcpp RCurl RSQLite stringr testthat withr XML yaml]; }; + biodb = derive2 { name="biodb"; version="1.2.1"; sha256="1z4adapsnpw6fwanihdz43r11ijypxs5wbndb1i98j8kb7wf308k"; depends=[BiocFileCache chk jsonlite lgr lifecycle openssl plyr progress R6 rappdirs Rcpp RCurl RSQLite stringr testthat withr XML yaml]; }; biodbChebi = derive2 { name="biodbChebi"; version="1.0.1"; sha256="1f1bbfk0zp7x07vgnskd0wxb0zv2pvjk22cndw2zn7pgds0g9d9d"; depends=[biodb R6]; }; - biodbHmdb = derive2 { name="biodbHmdb"; version="1.0.1"; sha256="097ia9xzc4pc84n79wadymsmzlip1ygqm54x4fh2hdfinib8mjgb"; depends=[biodb R6 Rcpp testthat]; }; + biodbHmdb = derive2 { name="biodbHmdb"; version="1.0.2"; sha256="0q47y6fi6q9qvby3c3g84p3w8r5ks4ilgsgjlv1ava0ys0fc9iiw"; depends=[biodb R6 Rcpp testthat]; }; biodbKegg = derive2 { name="biodbKegg"; version="1.0.0"; sha256="16xmm3ymzd4jf55plahbxi844hpv0hpqq6v2ygcjf6wrs0yy2mhd"; depends=[biodb chk lifecycle R6]; }; biodbLipidmaps = derive2 { name="biodbLipidmaps"; version="1.0.1"; sha256="14086f88r7mavpzp823mhpi4b9zq8q2kqxlwnmp02i03jj8mjnr8"; depends=[biodb lifecycle R6]; }; biodbUniprot = derive2 { name="biodbUniprot"; version="1.0.0"; sha256="1aydkqqb8vs5b844ff1j09a7g8rmf7qr6rg2aw8nqshihq510v4d"; depends=[biodb R6]; }; @@ -1166,7 +1166,7 @@ in with self; { chromDraw = derive2 { name="chromDraw"; version="2.24.0"; sha256="11vvk3m2av7dffwlbg74xlk5f50r1b6fijv820875b7sxhfhxy7x"; depends=[GenomicRanges Rcpp]; }; chromPlot = derive2 { name="chromPlot"; version="1.22.0"; sha256="190h1906007wm14y0ra1nnanacig0yrhcpmnpbanzl68gmjhvalh"; depends=[biomaRt GenomicRanges]; }; chromVAR = derive2 { name="chromVAR"; version="1.16.0"; sha256="0ylsfr540l763bh010irbcavlskahyb1769pppimdgn22gyr3spk"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicRanges ggplot2 IRanges Matrix miniUI nabor plotly RColorBrewer Rcpp RcppArmadillo Rsamtools Rtsne S4Vectors shiny SummarizedExperiment TFBSTools]; }; - chromstaR = derive2 { name="chromstaR"; version="1.19.0"; sha256="0z511l26fhz00qn8h2yybylk8c3ws8hj1hp8hq9qj9mfczwiqy3j"; depends=[bamsignals BiocGenerics chromstaRData doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges mvtnorm reshape2 Rsamtools S4Vectors]; }; + chromstaR = derive2 { name="chromstaR"; version="1.20.2"; sha256="1akcmxzn4j9ph4n3lsgfh8fh8hrb28jjamz037w59bsdkcv6wyjq"; depends=[bamsignals BiocGenerics chromstaRData doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges mvtnorm reshape2 Rsamtools S4Vectors]; }; chromswitch = derive2 { name="chromswitch"; version="1.16.0"; sha256="0mb26jhrkd99akrfsnx5ziszmwv3ydc6sp140s1wh6jwn6qjws73"; depends=[Biobase BiocParallel cluster dplyr GenomicRanges gplots IRanges lazyeval magrittr matrixStats NMF rtracklayer S4Vectors tidyr]; }; cicero = derive2 { name="cicero"; version="1.12.0"; sha256="1fc69nkm2cwpr6gkfmra2ph0lrmw486chswp4pn8i70ia43fzdm7"; depends=[assertthat Biobase BiocGenerics data_table dplyr FNN GenomicRanges ggplot2 glasso Gviz igraph IRanges Matrix monocle plyr reshape2 S4Vectors stringi stringr tibble tidyr VGAM]; }; circRNAprofiler = derive2 { name="circRNAprofiler"; version="1.8.0"; sha256="0l83r9idhrha1m21vpnw917m5dlldji49zvx4d25m5g3ia1pkhpf"; depends=[AnnotationHub Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DESeq2 dplyr edgeR GenomeInfoDb GenomicRanges ggplot2 gwascat IRanges magrittr R_utils readr reshape2 rlang rtracklayer S4Vectors seqinr stringi stringr universalmotif]; }; @@ -1185,7 +1185,7 @@ in with self; { clusterProfiler = derive2 { name="clusterProfiler"; version="4.2.0"; sha256="18y7482sw0awlhazikq13r2r0zid9ksk942rma87m448y1cq2fi5"; depends=[AnnotationDbi DOSE downloader dplyr enrichplot GO_db GOSemSim magrittr plyr qvalue rlang tidyr yulab_utils]; }; clusterSeq = derive2 { name="clusterSeq"; version="1.18.0"; sha256="1qyycc8wrik54bc2rvzisv6p05jnh1kf68jafqgw9lqpp5gk40bl"; depends=[baySeq BiocGenerics BiocParallel]; }; clusterStab = derive2 { name="clusterStab"; version="1.66.0"; sha256="1863jpdwx27snpil38waj3zr0w2m0q7xj8g1zm8c5cbx9as1cwkd"; depends=[Biobase]; }; - clustifyr = derive2 { name="clustifyr"; version="1.5.1"; sha256="0qrbfb04lfj72f7nv001p92a6q8j9ymh24b3c4gfg8pm4dw7m344"; depends=[cowplot dplyr entropy fgsea ggplot2 httr Matrix matrixStats proxy readr rlang S4Vectors scales SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; }; + clustifyr = derive2 { name="clustifyr"; version="1.6.0"; sha256="1jz6wfv1b585yf6m9f265ig29p5qxilri40lnpry6h0am2s72xr3"; depends=[cowplot dplyr entropy fgsea ggplot2 httr Matrix matrixStats proxy readr rlang S4Vectors scales SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; }; cmapR = derive2 { name="cmapR"; version="1.6.0"; sha256="0zk96k6z80zkd4q6s4fcn21vmz6y17bfa1sqllvyn3zy237gj132"; depends=[data_table flowCore matrixStats rhdf5 SummarizedExperiment]; }; cn_farms = derive2 { name="cn.farms"; version="1.42.0"; sha256="062rp52r1wv5wiqjvp0rsjfzqyjgh4v73iir77ivmmimsydv38lm"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; }; cn_mops = derive2 { name="cn.mops"; version="1.40.0"; sha256="1ibmm87x0wi93ss1p2vmaxwa1xncqx63q42zf7fppmmdgfn4rcvg"; depends=[Biobase BiocGenerics exomeCopy GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; @@ -1250,7 +1250,7 @@ in with self; { ddPCRclust = derive2 { name="ddPCRclust"; version="1.14.0"; sha256="13s2h8bfd6i6shbm9iwlz99nvyif6c934ccgkdihgbxfq2zacmdj"; depends=[clue flowCore flowDensity flowPeaks ggplot2 openxlsx plotrix R_utils SamSPECTRAL]; }; dearseq = derive2 { name="dearseq"; version="1.6.0"; sha256="07vr27rv3z86ajd62c0ilvfgz9z35qsiwwi5pv4sygbhnnjwh3rc"; depends=[ggplot2 KernSmooth matrixStats patchwork pbapply statmod survey viridisLite]; }; debCAM = derive2 { name="debCAM"; version="1.12.0"; sha256="1nqc2r9wr4q71zsya0ylwkxc91sqa4zkal26wiv5h10bk5nxig5r"; depends=[apcluster Biobase BiocParallel corpcor DMwR2 geometry NMF nnls pcaPP rJava SummarizedExperiment]; }; - debrowser = derive2 { name="debrowser"; version="1.22.1"; sha256="0z3jq3xb6bbks5hqikmsb4frp8ilvrz741ir9nyq5cfz5v1djwfv"; depends=[annotate AnnotationDbi apeglm ashr clusterProfiler colourpicker DESeq2 DOSE DT edgeR enrichplot GenomicRanges ggplot2 gplots Harman heatmaply igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db pathview plotly RColorBrewer RCurl reshape2 S4Vectors shiny shinyBS shinydashboard shinyjs stringi SummarizedExperiment sva]; }; + debrowser = derive2 { name="debrowser"; version="1.22.2"; sha256="006bsqyd8fp1z83jhy1z6w3f0rmb5av8bgrsx2r03n8i7bzrsnq3"; depends=[annotate AnnotationDbi apeglm ashr clusterProfiler colourpicker DESeq2 DOSE DT edgeR enrichplot GenomicRanges ggplot2 gplots Harman heatmaply igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db pathview plotly RColorBrewer RCurl reshape2 S4Vectors shiny shinyBS shinydashboard shinyjs stringi SummarizedExperiment sva]; }; deco = derive2 { name="deco"; version="1.10.0"; sha256="1bvn5wipvyxy5h74wl1433pv5lzdp82m8yxwr3b8cljnlqcqh9da"; depends=[ade4 AnnotationDbi Biobase BiocParallel BiocStyle cluster foreign gdata ggplot2 gplots gridExtra limma locfit made4 RColorBrewer reshape2 scatterplot3d sfsmisc SummarizedExperiment]; }; decompTumor2Sig = derive2 { name="decompTumor2Sig"; version="2.10.0"; sha256="125913q735vazmlnvg8vdca8j88y0mx24zdlqzsgzw9ylkwbq86p"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo gridExtra Matrix plyr quadprog readxl S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; decontam = derive2 { name="decontam"; version="1.14.0"; sha256="0k8rp91ap3dwzhhhg3s7ikbphxvgha7m118ayrghshp8929g3cdm"; depends=[ggplot2 reshape2]; }; @@ -1299,7 +1299,7 @@ in with self; { enrichTF = derive2 { name="enrichTF"; version="1.10.0"; sha256="0ssjsl5vh0wdq0584yl6c61d8bp5n3qvkgfrqdlpjfwb7b7gh4xv"; depends=[BiocGenerics BSgenome clusterProfiler GenomeInfoDb GenomicRanges ggplot2 ggpubr heatmap3 IRanges JASPAR2018 magrittr motifmatchr pipeFrame R_utils rmarkdown rtracklayer S4Vectors TFBSTools]; }; enrichplot = derive2 { name="enrichplot"; version="1.14.1"; sha256="0nsx96mkcg0hhg3x8jndzq3xvq9bq7m4yf1b3ry73b17ladx81ch"; depends=[aplot DOSE ggplot2 ggraph ggtree GOSemSim igraph magrittr plyr purrr RColorBrewer reshape2 scatterpie shadowtext yulab_utils]; }; ensemblVEP = derive2 { name="ensemblVEP"; version="1.36.0"; sha256="1b9i8qv16mrr31qpvvcimcd80nkykky8dygi90jinkzgvkzdxi64"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges S4Vectors SummarizedExperiment VariantAnnotation]; }; - ensembldb = derive2 { name="ensembldb"; version="2.18.1"; sha256="1272vflafd5c3zna77lxm8895h6cjv2bvs4vbl3ja1nlg97j0zfk"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; }; + ensembldb = derive2 { name="ensembldb"; version="2.18.2"; sha256="0q56gv0isa9ayw505py7i7x65pvcshmd2j1mna1wpbk66wqj4qzx"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; }; epiNEM = derive2 { name="epiNEM"; version="1.18.0"; sha256="0xs9jzy0d9iv45d5ina7ki79wix96318yp17mxhp1l4vdkpm3fk7"; depends=[BoolNet e1071 graph gtools igraph latex2exp lattice latticeExtra minet mnem pcalg RColorBrewer]; }; epialleleR = derive2 { name="epialleleR"; version="1.2.0"; sha256="1zgwwzrg9ngsfq186qsmvgwxcz0b9avr8wk1yadjlrjc9avgh2d3"; depends=[BH BiocGenerics data_table GenomeInfoDb GenomicRanges Rcpp Rhtslib stringi SummarizedExperiment VariantAnnotation zlibbioc]; }; epidecodeR = derive2 { name="epidecodeR"; version="1.2.0"; sha256="1fy3i7djpj2inlcpa2h4n5hzp0q6a555sc5axg1jwxiala9l8siv"; depends=[dplyr EnvStats GenomicRanges ggplot2 ggpubr IRanges rstatix rtracklayer]; }; @@ -1484,7 +1484,7 @@ in with self; { immunoClust = derive2 { name="immunoClust"; version="1.26.0"; sha256="0vqn8455spray252b6kg771mwz4b6f51d4k7srg2i3rn7kyp7r38"; depends=[flowCore lattice]; }; immunotation = derive2 { name="immunotation"; version="1.2.0"; sha256="1rdmy46grqjf8ydgq0pgaja3jv4jna0yffw7fmiirfh96m2qvb00"; depends=[curl ggplot2 maps ontologyIndex readr rlang rvest stringr tidyr xml2]; }; impute = derive2 { name="impute"; version="1.68.0"; sha256="0k6dil8ljgp5qr87m7hxli4igb36fbxiwczaqc5pi8mlfh70fqj5"; depends=[]; }; - infercnv = derive2 { name="infercnv"; version="1.10.0"; sha256="09yipqak5f5v8sf6kdnwl7v3xiaf15lpg6dmkw51inbi2vg23g5j"; depends=[ape argparse BiocGenerics caTools coda coin digest doParallel dplyr edgeR fastcluster fitdistrplus foreach futile_logger future ggplot2 gplots gridExtra HiddenMarkov leiden Matrix phyclust RANN RColorBrewer reshape rjags SingleCellExperiment SummarizedExperiment tidyr]; }; + infercnv = derive2 { name="infercnv"; version="1.10.1"; sha256="1hmkziaz8w4dlcf4zqpd80rxzb5394hqy8y1sgjidk18x42m88v0"; depends=[ape argparse BiocGenerics caTools coda coin digest doParallel dplyr edgeR fastcluster fitdistrplus foreach futile_logger future ggplot2 gplots gridExtra HiddenMarkov leiden Matrix phyclust RANN RColorBrewer reshape rjags SingleCellExperiment SummarizedExperiment tidyr]; }; infinityFlow = derive2 { name="infinityFlow"; version="1.4.0"; sha256="1bqkw5z6sxmj10wxzqaszjl5fw4rvfkr9j0w7qvprqyc3335z6a9"; depends=[Biobase flowCore generics gtools matlab pbapply png raster uwot xgboost]; }; intansv = derive2 { name="intansv"; version="1.34.0"; sha256="1y4s2vpaw0kmzz5qn52yq2dzzivdi5scmxh3w7garbispc6m0v1g"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; }; interacCircos = derive2 { name="interacCircos"; version="1.4.0"; sha256="1jn3373sj9l5ypc21niv81rfwa2hfmp1g28ab9xx8hdv18rsl8d6"; depends=[htmlwidgets plyr RColorBrewer]; }; @@ -1590,14 +1590,14 @@ in with self; { miRcomp = derive2 { name="miRcomp"; version="1.24.0"; sha256="1kknr5m62ly03p5yzam5c3hwpaky25g3y92h6z3sg7xfjgsd9qpz"; depends=[Biobase KernSmooth miRcompData]; }; miRmine = derive2 { name="miRmine"; version="1.16.0"; sha256="0cx7181dsfclq2dplx1wcgnaqhxlgyfxsi0g4ii82yp1ka5fpml4"; depends=[SummarizedExperiment]; }; miRspongeR = derive2 { name="miRspongeR"; version="1.20.0"; sha256="06nczhbbvx1dmmwry88057zbvw3dq64qn5mn91ipi5qfnckb84wd"; depends=[clusterProfiler corpcor DOSE igraph linkcomm MCL org_Hs_eg_db Rcpp ReactomePA survival varhandle]; }; - mia = derive2 { name="mia"; version="1.2.0"; sha256="1bn5wrhx95yyfp178cz3xpxvqvjf6sy6xch510afbr7rarmyjrnp"; depends=[ape BiocGenerics BiocParallel Biostrings DECIPHER decontam DelayedArray DelayedMatrixStats DirichletMultinomial dplyr IRanges MASS rlang S4Vectors scater scuttle SingleCellExperiment SummarizedExperiment tibble tidyr TreeSummarizedExperiment vegan]; }; + mia = derive2 { name="mia"; version="1.2.2"; sha256="0ymikgpskgbx52a525qhyfn0b6jq2zgnda5asj3apq1x9yn1crb1"; depends=[ape BiocGenerics BiocParallel Biostrings DECIPHER decontam DelayedArray DelayedMatrixStats DirichletMultinomial dplyr IRanges MASS MultiAssayExperiment rlang S4Vectors scater scuttle SingleCellExperiment SummarizedExperiment tibble tidyr TreeSummarizedExperiment vegan]; }; miaSim = derive2 { name="miaSim"; version="1.0.0"; sha256="0870jvqwcg08fyzb4c9qsb6sk7r4sxqzrrfzijd25sdjbqly4zzx"; depends=[deSolve poweRlaw SummarizedExperiment]; }; miaViz = derive2 { name="miaViz"; version="1.2.0"; sha256="1plkr810cnb6kq7zqlmnx8c2mfa1gzsa92r1hj6xrqx9ykc8hapd"; depends=[ape BiocGenerics BiocParallel DelayedArray DirichletMultinomial dplyr ggnewscale ggplot2 ggraph ggtree mia purrr rlang S4Vectors scater SummarizedExperiment tibble tidygraph tidyr tidytree TreeSummarizedExperiment viridis]; }; microRNA = derive2 { name="microRNA"; version="1.52.0"; sha256="0x145alfh8qnbnhahxhfygcqc4xwiiirabl9k9nbcyadc5fawfc1"; depends=[Biostrings]; }; microbiome = derive2 { name="microbiome"; version="1.16.0"; sha256="0j00xbw5gh53bfij8q3q2pa8lwvn3wb23vs9lybvlhjp725h064z"; depends=[dplyr ggplot2 phyloseq reshape2 Rtsne scales tibble tidyr vegan]; }; microbiomeDASim = derive2 { name="microbiomeDASim"; version="1.8.0"; sha256="0g3lnwr5v62lkfz5fwdpjs9lr9vb8h8grqqrvwhyin5xmgkr5lnn"; depends=[Biobase ggplot2 MASS Matrix metagenomeSeq mvtnorm pbapply phyloseq tmvtnorm]; }; microbiomeExplorer = derive2 { name="microbiomeExplorer"; version="1.4.0"; sha256="0ghsv6yf6v3b2xqv6a5r2q0glzajmy5wa3qhsnds6v0gj62v5ycg"; depends=[Biobase biomformat broom car DESeq2 dplyr DT forcats heatmaply knitr limma lubridate magrittr matrixStats metagenomeSeq plotly purrr RColorBrewer readr reshape2 rlang rmarkdown shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr tibble tidyr vegan]; }; - microbiomeMarker = derive2 { name="microbiomeMarker"; version="1.0.0"; sha256="0sd5y2a4gl3j7z3hq1vzdlzv1dbqzdc0ifhk948wrb9mqfmgbqhq"; depends=[ALDEx2 ANCOMBC Biobase BiocGenerics biomformat Biostrings caret coin ComplexHeatmap DESeq2 dplyr edgeR ggplot2 ggsignif ggtree IRanges limma magrittr MASS metagenomeSeq multtest patchwork phyloseq plotROC purrr rlang S4Vectors tibble tidyr tidytree yaml]; }; + microbiomeMarker = derive2 { name="microbiomeMarker"; version="1.0.1"; sha256="1q0d3vi0gvxyj7sala385b7xxy6qynq4agmn6lhfgipw05qr1fyk"; depends=[ALDEx2 ANCOMBC Biobase BiocGenerics biomformat Biostrings caret coin ComplexHeatmap DESeq2 dplyr edgeR ggplot2 ggsignif ggtree IRanges limma magrittr MASS metagenomeSeq multtest patchwork phyloseq plotROC purrr rlang S4Vectors tibble tidyr tidytree yaml]; }; midasHLA = derive2 { name="midasHLA"; version="1.2.0"; sha256="1dnqx9h3qz5p6l19s0nm90a35523cn32ymgg8pri5rc3jfrilv9k"; depends=[assertthat broom dplyr formattable HardyWeinberg kableExtra knitr magrittr MultiAssayExperiment qdapTools rlang S4Vectors stringi SummarizedExperiment tibble]; }; miloR = derive2 { name="miloR"; version="1.2.0"; sha256="1pvd8kdh6mmv10ryq038qwr07w5g0n6pnpchb653i3dixygkgd94"; depends=[BiocNeighbors BiocParallel BiocSingular cowplot dplyr edgeR ggbeeswarm ggplot2 ggraph ggrepel gtools igraph irlba limma Matrix matrixStats patchwork RColorBrewer S4Vectors SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; }; mimager = derive2 { name="mimager"; version="1.18.0"; sha256="0xd5yxbljyxzvdr8y28qk1pl9sy44q9pxkpcfmxphsbf6bvy0d5b"; depends=[affy affyPLM Biobase BiocGenerics DBI gtable oligo oligoClasses preprocessCore S4Vectors scales]; }; @@ -1674,7 +1674,7 @@ in with self; { nuCpos = derive2 { name="nuCpos"; version="1.12.0"; sha256="1sqanvdhmvbyr52mc5hvsp2kdfgy8d8bh2w4av213i96nqmz55vw"; depends=[]; }; nucleR = derive2 { name="nucleR"; version="2.26.0"; sha256="0wfgfjrjvd0gg7i2zjxsc37dk3s7cw4jqd41hrqq31m2iqgbk6lk"; depends=[Biobase BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr Rsamtools S4Vectors ShortRead]; }; nucleoSim = derive2 { name="nucleoSim"; version="1.22.0"; sha256="1y0f8dlarb5cm3na691ik04f3vwzdfzbd9fvffcgkfj9py6y28n5"; depends=[IRanges S4Vectors]; }; - nullranges = derive2 { name="nullranges"; version="1.0.0"; sha256="0n29ij0q96ridwbwvgsyj8c17dbscfgwgama0lxjcbvrdp4dnclh"; depends=[data_table GenomeInfoDb GenomicRanges ggplot2 ggridges InteractionSet IRanges ks plyranges progress rlang S4Vectors scales speedglm]; }; + nullranges = derive2 { name="nullranges"; version="1.0.1"; sha256="1cj57qq6hhkva2n1nx8d6mbmk04w86h987rydxg61cfc5k1b0j0p"; depends=[data_table GenomeInfoDb GenomicRanges ggplot2 ggridges InteractionSet IRanges ks plyranges progress rlang S4Vectors scales speedglm]; }; occugene = derive2 { name="occugene"; version="1.54.0"; sha256="0kri0356b4560liv9c64nvjmyyssyb93xh244k1k2q50yy5il5b0"; depends=[]; }; odseq = derive2 { name="odseq"; version="1.22.0"; sha256="14bkx7b1pc3kdmn1s9vbc5rb3wxzyyi8n56yrkiqvxc99zl3s9cr"; depends=[kebabs mclust msa]; }; oligo = derive2 { name="oligo"; version="1.58.0"; sha256="1cmnnq0d5xsjsx8c8n8wcl6l9d31sbglb8yrsibykcvnhw15fsf6"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; }; @@ -1835,7 +1835,7 @@ in with self; { rhdf5filters = derive2 { name="rhdf5filters"; version="1.6.0"; sha256="05b015pyp3g1crmm2d3ldsa7r5w0khmf87qbl4fv16r6pdggha78"; depends=[Rhdf5lib]; }; riboSeqR = derive2 { name="riboSeqR"; version="1.28.0"; sha256="0nnhjvjl4c9yyfzjf8kcj4yky5cdimicp7lz008sczy19jq4vjhd"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools seqLogo]; }; ribor = derive2 { name="ribor"; version="1.6.0"; sha256="0g6z3rlmf3i6w3j0dldycz9k8jbg3d2ilv319270515j0lmmdngc"; depends=[dplyr ggplot2 hash rhdf5 rlang S4Vectors tidyr yaml]; }; - ribosomeProfilingQC = derive2 { name="ribosomeProfilingQC"; version="1.6.0"; sha256="18ix3mp725vmmd1a4jvl9ayby1pjn1pir54a42aflbb8bq0g46rz"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome cluster EDASeq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfittext ggplot2 ggrepel IRanges motifStack Rsamtools Rsubread rtracklayer RUVSeq S4Vectors scales XVector]; }; + ribosomeProfilingQC = derive2 { name="ribosomeProfilingQC"; version="1.6.1"; sha256="13wg6vrv69fjz0yqf4s4k1gr09zp3p7bpf6p03an8jah8b566s66"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome cluster EDASeq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfittext ggplot2 ggrepel IRanges motifStack Rsamtools Rsubread rtracklayer RUVSeq S4Vectors scales XVector]; }; rmelting = derive2 { name="rmelting"; version="1.10.0"; sha256="0jhlwnllp6zpi5prd9g51c1czi994jvky3f2v84p9hvgf91xf5f8"; depends=[Rdpack rJava]; }; rmspc = derive2 { name="rmspc"; version="1.0.0"; sha256="1fszm50s87xafddspwl6cjg8gbp7mvd16w6ajz8fy0wlc4x5qia3"; depends=[BiocManager GenomicRanges processx rtracklayer stringr]; }; rnaEditr = derive2 { name="rnaEditr"; version="1.4.0"; sha256="0hs3g7cr6c8gcvg1svv88r4h68364gfnqsmdjc6llwg2l1j36a8w"; depends=[BiocGenerics bumphunter corrplot GenomeInfoDb GenomicRanges IRanges logistf plyr S4Vectors survival]; }; @@ -1915,7 +1915,7 @@ in with self; { seqbias = derive2 { name="seqbias"; version="1.42.0"; sha256="1q608c1madij8l52ljl3w52vi3cssr6ikny84yj6n8s7yvpx5jpr"; depends=[Biostrings GenomicRanges Rhtslib]; }; seqcombo = derive2 { name="seqcombo"; version="1.16.0"; sha256="0xyrjbvgrld5sy6g6sp79f43j93jnyccwg21il65fqrzb7z4d7xk"; depends=[Biostrings cowplot dplyr ggplot2 igraph magrittr yulab_utils]; }; seqsetvis = derive2 { name="seqsetvis"; version="1.14.0"; sha256="053y3vxn7ndwx21d41k5xf6wki37kxlr4ghvfq1w2f9w7cc59yb7"; depends=[data_table eulerr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 ggplotify IRanges limma pbapply pbmcapply png RColorBrewer Rsamtools rtracklayer S4Vectors UpSetR]; }; - sesame = derive2 { name="sesame"; version="1.12.0"; sha256="06cmbbf62h7f3rv1ika6x3cpsd4mghi9wmv5a4gi1fasxh6h84y9"; depends=[BiocParallel DNAcopy e1071 fgsea GenomicRanges ggplot2 ggrepel illuminaio IRanges KernSmooth MASS matrixStats preprocessCore randomForest reshape2 S4Vectors sesameData stringr SummarizedExperiment tibble wheatmap]; }; + sesame = derive2 { name="sesame"; version="1.12.1"; sha256="0wqa0zvmnkgl0bb6x9d3vdvnpbhiis76fp0j1zzj18453zjd9kzn"; depends=[BiocParallel DNAcopy e1071 fgsea GenomicRanges ggplot2 ggrepel illuminaio IRanges KernSmooth MASS matrixStats preprocessCore randomForest reshape2 S4Vectors sesameData stringr SummarizedExperiment tibble wheatmap]; }; sevenC = derive2 { name="sevenC"; version="1.14.0"; sha256="06m6479ps7896zaks8jnnak8l7c6abbsdx56k3l5ir78681g4bq1"; depends=[BiocGenerics boot data_table GenomeInfoDb GenomicRanges InteractionSet IRanges purrr readr rtracklayer S4Vectors]; }; sevenbridges = derive2 { name="sevenbridges"; version="1.24.0"; sha256="03p7p1mwa3m8zvyz5761xmqhch6cfgy42cv0swwgj0n9jr83sc23"; depends=[curl data_table docopt httr jsonlite objectProperties S4Vectors stringr uuid yaml]; }; shinyMethyl = derive2 { name="shinyMethyl"; version="1.30.0"; sha256="0ihs4l4r46qyv7j8a2g590x86y0dwki2gzllwq2a31il34jrbgq5"; depends=[BiocGenerics IlluminaHumanMethylation450kmanifest matrixStats minfi RColorBrewer shiny]; }; @@ -1991,7 +1991,7 @@ in with self; { synapsis = derive2 { name="synapsis"; version="1.0.0"; sha256="1kqapzcd2zvmyaqshcrfxkkaf6k7kwaqnd6g4dhnjcf2wqnf6fs5"; depends=[EBImage]; }; synergyfinder = derive2 { name="synergyfinder"; version="3.2.2"; sha256="0kpvp0lamchbgs4p34pbq14y3zrmgk0pgil0qhsrm3kv1pizk1w8"; depends=[dplyr drc furrr future ggforce ggplot2 ggrepel gstat kriging lattice magrittr metR mice nleqslv pbapply plotly purrr reshape2 sp SpatialExtremes stringr tidyr tidyverse vegan]; }; synlet = derive2 { name="synlet"; version="1.24.0"; sha256="1xidxlkppap0x8h9iiyl78lcx50ckpg46n8pl49vz4435vd6grp2"; depends=[doBy dplyr ggplot2 magrittr RankProd RColorBrewer reshape2]; }; - systemPipeR = derive2 { name="systemPipeR"; version="2.0.0"; sha256="0kibr47z7ml13hpl955qcr4wp2z4nq7gjiinyk30wivrwrng5sg1"; depends=[BiocGenerics Biostrings crayon GenomicRanges ggplot2 htmlwidgets magrittr Rsamtools S4Vectors ShortRead stringr SummarizedExperiment yaml]; }; + systemPipeR = derive2 { name="systemPipeR"; version="2.0.1"; sha256="1r0qc1pyff9nvjix21xjd6fmka06ywr4ipr8szm52hq41hwaiqgq"; depends=[BiocGenerics Biostrings crayon GenomicRanges ggplot2 htmlwidgets magrittr Rsamtools S4Vectors ShortRead stringr SummarizedExperiment yaml]; }; systemPipeShiny = derive2 { name="systemPipeShiny"; version="1.4.0"; sha256="0h803ijajf32igfknkaivlzrc323apzligq1j8ghpf02q7f5q830"; depends=[assertthat bsplus crayon dplyr drawer DT ggplot2 glue htmltools magrittr openssl plotly R6 rlang RSQLite rstudioapi shiny shinyAce shinydashboard shinydashboardPlus shinyFiles shinyjqui shinyjs shinytoastr shinyWidgets spsComps spsUtil stringr styler tibble vroom yaml]; }; systemPipeTools = derive2 { name="systemPipeTools"; version="1.2.0"; sha256="1n53nwb00zmrhb8h1fq4lqzdd87f74c4l1z24sid4xrjssylrnwr"; depends=[ape DESeq2 dplyr DT GGally ggplot2 ggrepel ggtree glmpca magrittr pheatmap plotly Rtsne SummarizedExperiment tibble]; }; tLOH = derive2 { name="tLOH"; version="1.2.0"; sha256="0k3lqlivxbv4gaipiskhpl34rjrmrn1x4243awxnvbhhvaqq5r50"; depends=[data_table dplyr GenomicRanges ggplot2 MatrixGenerics purrr scales VariantAnnotation]; }; @@ -2042,7 +2042,7 @@ in with self; { twilight = derive2 { name="twilight"; version="1.70.0"; sha256="1fy01p3fgajc2jhc286b51mcynj0lrzv3ln21kyj981qk2c390qq"; depends=[Biobase]; }; twoddpcr = derive2 { name="twoddpcr"; version="1.18.0"; sha256="0b8r7dvqjlswkpfy141kibldj9aw3w8wxw0swmcgxkivml4gz1sw"; depends=[class ggplot2 hexbin RColorBrewer S4Vectors scales shiny]; }; txcutr = derive2 { name="txcutr"; version="1.0.0"; sha256="0vzdbn75d9hvb4ni5ra7z4s52rbbl3sdi6kpidy421l3sb5clbsj"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors]; }; - tximeta = derive2 { name="tximeta"; version="1.12.0"; sha256="03fbz6pka7bcbhd0bblgckyxsqhzp4n8qp2dcpdb3sr01lyw4bc5"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings ensembldb GenomeInfoDb GenomicFeatures GenomicRanges IRanges jsonlite Matrix S4Vectors SummarizedExperiment tibble tximport]; }; + tximeta = derive2 { name="tximeta"; version="1.12.3"; sha256="15l1jvfis7xzxwwnlqs8xpaf212v1lx513np2dc4l4h7rqhclm2v"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings ensembldb GenomeInfoDb GenomicFeatures GenomicRanges IRanges jsonlite Matrix S4Vectors SummarizedExperiment tibble tximport]; }; tximport = derive2 { name="tximport"; version="1.22.0"; sha256="0w6pr7s9j8l4fpn3przbfrsyxvzxc3ficgsychvhq3bami9np8g4"; depends=[]; }; uSORT = derive2 { name="uSORT"; version="1.20.0"; sha256="0y6a6ksvbrxyqri0mc01nbls107sacs66zmbjs4qxq52rmy5xvcd"; depends=[Biobase BiocGenerics cluster fpc gplots igraph Matrix monocle plyr RANN RSpectra VGAM]; }; uncoverappLib = derive2 { name="uncoverappLib"; version="1.4.0"; sha256="0nh5z1iirqdiv5q66k1r8byv9dasnzyinl0plan68gxvia770cnb"; depends=[BiocFileCache BSgenome_Hsapiens_UCSC_hg19 condformat DT EnsDb_Hsapiens_v75 EnsDb_Hsapiens_v86 GenomicRanges Gviz Homo_sapiens markdown openxlsx org_Hs_eg_db OrganismDbi processx rappdirs rlist Rsamtools shiny shinyBS shinycssloaders shinyjs shinyWidgets stringr TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; diff --git a/pkgs/development/r-modules/cran-packages.nix b/pkgs/development/r-modules/cran-packages.nix index e51c099f44df..8671ca039c63 100644 --- a/pkgs/development/r-modules/cran-packages.nix +++ b/pkgs/development/r-modules/cran-packages.nix @@ -4,7 +4,7 @@ # Rscript generate-r-packages.R cran >new && mv new cran-packages.nix { self, derive }: -let derive2 = derive { snapshot = "2021-11-06"; }; +let derive2 = derive { snapshot = "2021-11-14"; }; in with self; { A3 = derive2 { name="A3"; version="1.0.0"; sha256="017hq9pjsv1h9i7cqk5cfx27as54shlhdsdvr6jkhb8jfkpdb6cw"; depends=[pbapply xtable]; }; AATtools = derive2 { name="AATtools"; version="0.0.1"; sha256="08is383xhs2lc9wfffykcwqyl8mwcxfpk3lnvlpkp96hq9m9ikbf"; depends=[doParallel dplyr foreach magrittr]; }; @@ -68,7 +68,7 @@ in with self; { AMGET = derive2 { name="AMGET"; version="1.0"; sha256="18wdzzg5wr7akbd1iasa4mvmy44fb2n5gpghwcrx80knnicy3dxq"; depends=[]; }; AMModels = derive2 { name="AMModels"; version="0.1.4"; sha256="18h075bzk8s75b3zmjd0x8c6dpl40445d4kv8n0p4ldnx80b1aha"; depends=[unmarked]; }; AMOEBA = derive2 { name="AMOEBA"; version="1.1"; sha256="1npzh3rpfnxd4r1pj1hm214sfgbw4wmq4ws093lnl7pvsl0q37xn"; depends=[rlecuyer snowfall spdep]; }; - AMPLE = derive2 { name="AMPLE"; version="0.0.2"; sha256="0j19f8rl7gkads4n52l5gfc5k7dx27sswzrypwl7dnxhfp4ivql7"; depends=[dplyr ggplot2 shiny shinyjs tidyr wesanderson]; }; + AMPLE = derive2 { name="AMPLE"; version="1.0.0"; sha256="1lcwwf41i0mkg2bv8z5mzrj6h3pa31h33mrmbxbndjgb3ivz2wf5"; depends=[ggplot2 markdown R6 RColorBrewer scales shiny shinyjs shinyscreenshot]; }; AMR = derive2 { name="AMR"; version="1.7.1"; sha256="1ggd3lwiimlb6qrd444jcx0capkq5rxr7m8wb9q663z1332grv1b"; depends=[]; }; ANN2 = derive2 { name="ANN2"; version="2.3.4"; sha256="1izljhz3rkzq05dkvg9q3fdyj7q871j8lsky67d5r8ffpzm1lk3z"; depends=[ggplot2 Rcpp RcppArmadillo reshape2 testthat viridisLite]; }; ANOM = derive2 { name="ANOM"; version="0.5"; sha256="14nfy9xplbabfprwxz5fvx26nmqhp657vr6d90dc8vk8ds63ckiz"; depends=[ggplot2 MCPAN multcomp nparcomp SimComp]; }; @@ -76,6 +76,7 @@ in with self; { ANOVAShiny = derive2 { name="ANOVAShiny"; version="0.1.0"; sha256="1z8wi8c8j3rlchfk1vx101qz1r9j2jl5lfh72y5lqsisqxl2fyyz"; depends=[DescTools dplyr HH rhandsontable rmarkdown shiny]; }; ANOVAShiny2 = derive2 { name="ANOVAShiny2"; version="0.1.0"; sha256="0bnxfg5c37wi5g53jd0zqq31yx29zvlk2m2jh6jlwki8khpp9y00"; depends=[DescTools dplyr HH rhandsontable rmarkdown shiny]; }; ANOVAreplication = derive2 { name="ANOVAreplication"; version="1.1.5"; sha256="1d2r2cwpn9rdfbmiccag487pvsq6adn7b321c5z8i7n671h2wi26"; depends=[quadprog shiny]; }; + ANTs = derive2 { name="ANTs"; version="0.0.1"; sha256="164gg9sqhc2g8zwjar5nkksvxamysfh8fidsml5q788r424a6f78"; depends=[gtools Kendall lme4 Rcpp RcppArmadillo RcppEigen]; }; AOV1R = derive2 { name="AOV1R"; version="0.1.0"; sha256="0dv7k0mifybkarpwqyla5j6cvw9dcch09wvdq09ra9bsf4vyk652"; depends=[cellranger data_table lazyeval purrr]; }; APAtree = derive2 { name="APAtree"; version="1.0.1"; sha256="0vhvx2xp62avyq405jqn4i3z8awlifcs1lb527brxxhybrhnk4rv"; depends=[BH FD lwgeom raster Rcpp sf units]; }; APCI = derive2 { name="APCI"; version="1.0.3"; sha256="1fdv9zpc04i39zw8mg38mirh2nb8nkyf17s12fm83jp6x0jf7vbc"; depends=[data_table dplyr gee ggplot2 ggpubr magrittr stringr survey]; }; @@ -249,7 +250,7 @@ in with self; { BANOVA = derive2 { name="BANOVA"; version="1.2.0"; sha256="0zyfgcx6wxrl9vgdpbzcs8pb6irmyagknjkcl1x30pzlj4dlx3kg"; depends=[coda rjags rstan runjags]; }; BARIS = derive2 { name="BARIS"; version="1.1.1"; sha256="1h1zrgpn69nvz61567c08vfynmzy70g31a37wp4p6g8wri1hr7xg"; depends=[checkmate data_table downloader dplyr httr janitor jsonlite magrittr memoise miniUI rgdal rio rstudioapi sf shiny stringi stringr XML]; }; BART = derive2 { name="BART"; version="2.9"; sha256="1yzwiyjc2gq2vvw5z2psmyqbbb1kq0xvsb0zingcn8qikw45mm5m"; depends=[nlme nnet Rcpp survival]; }; - BAS = derive2 { name="BAS"; version="1.5.5"; sha256="1iakx36r4lnl6xs77m9mfcj5w3mb4g482s2mpzq65v69k10nj8lj"; depends=[]; }; + BAS = derive2 { name="BAS"; version="1.6.0"; sha256="01qmh49k5k6sidy3k5xx3cy3vmj8f59znd4z2jn0sqjzzngyxypg"; depends=[]; }; BASIX = derive2 { name="BASIX"; version="1.1"; sha256="18dkvv1iwskfnlpl6xridcgqpalbbpm2616mvc3hfrc0b26v01id"; depends=[]; }; BASS = derive2 { name="BASS"; version="1.2.2"; sha256="14zimfdkpsil22n1z4ldpi9smmja5kf7qqlklr5sr7y5avnh0hd9"; depends=[hypergeo truncdist]; }; BASiNET = derive2 { name="BASiNET"; version="0.0.4"; sha256="0pmn4znqhpav729ai7zr027a7sx6bz2lmlk086crmwm1fnwipqq4"; depends=[Biostrings igraph randomForest rJava rmcfs RWeka]; }; @@ -298,9 +299,9 @@ in with self; { BGData = derive2 { name="BGData"; version="2.3.0"; sha256="0j6f5dk16vj1q3h1byrbyc2fdmgq102lx4mx8vyypsqxcds99csq"; depends=[BEDMatrix bigmemory bit crochet ff LinkedMatrix symDMatrix synchronicity]; }; BGGE = derive2 { name="BGGE"; version="0.6.5"; sha256="1h76c40y45xhf2vp9g0q5j9lfwh16q9axbk5c9aqn4md008xr1j2"; depends=[]; }; BGGM = derive2 { name="BGGM"; version="2.0.4"; sha256="0676viahmid0n89jhs93ci8l7rxpam7rn75mdbshgx7f1q3wqiih"; depends=[BFpack GGally ggplot2 ggridges MASS mvnfast network Rcpp RcppArmadillo RcppDist RcppProgress Rdpack reshape sna]; }; - BGLR = derive2 { name="BGLR"; version="1.0.8"; sha256="15cv5k44yj5cws9jjd70hvrkm8gzn5x4hfx408n2fbqbv289b5jy"; depends=[truncnorm]; }; + BGLR = derive2 { name="BGLR"; version="1.0.9"; sha256="16chvslsknhfjdnfy79y4bl5xayvrk8j01y0r3nddq02ypwrc2j4"; depends=[MASS truncnorm]; }; BGSIMD = derive2 { name="BGSIMD"; version="1.0"; sha256="0xkr56z8l72wps7faqi5pna1nzalc3qj09jvd3v9zy8s7zf5r7w4"; depends=[]; }; - BGVAR = derive2 { name="BGVAR"; version="2.4.2"; sha256="1g374w5asxlaj6740smv9l82rgcbi47q7i9q2i7m2d6v8zxs57ij"; depends=[abind bayesm coda GIGrvg knitr MASS Matrix Rcpp RcppArmadillo RcppParallel RcppProgress readxl stochvol xts zoo]; }; + BGVAR = derive2 { name="BGVAR"; version="2.4.3"; sha256="109nmcjwbcgzcbah2pb8k3db3rbcpd2xsswjw1q7nl75v3rwdlp6"; depends=[abind bayesm coda GIGrvg knitr MASS Matrix Rcpp RcppArmadillo RcppParallel RcppProgress readxl stochvol xts zoo]; }; BGmisc = derive2 { name="BGmisc"; version="0.1"; sha256="15xgm3n3hn5zkrvyfcylyz5q3zah0155914a0rck0ipihb45sbbl"; depends=[Matrix]; }; BH = derive2 { name="BH"; version="1.75.0-0"; sha256="0nkgvl5qjs2a7jv0ncsrl4fqaw2pdaj7a1pncdv6kp874sci0k5f"; depends=[]; }; BHAI = derive2 { name="BHAI"; version="0.99.2"; sha256="1hawa55mk590is8ziav7fdszsa3a42bqb0znzqsazz5lkg4daaa7"; depends=[MCMCpack plotrix prevtoinc]; }; @@ -319,7 +320,6 @@ in with self; { BIOM_utils = derive2 { name="BIOM.utils"; version="0.9"; sha256="0xckhdvf15a62awfk9rjyqbi6rm7p4awxz7vg2m7bqiqzdll80p7"; depends=[]; }; BIOMASS = derive2 { name="BIOMASS"; version="2.1.6"; sha256="1iz9vszfg8lxa6yxrz3dj2ihpkcpchdbzdws5y568fczakcv8z5l"; depends=[data_table jsonlite minpack_lm proj4 rappdirs raster sp]; }; BIOdry = derive2 { name="BIOdry"; version="0.8"; sha256="1zga8g50wjnnz2h9b3ak9q67qnl1f14cq6hvdzf9f84pphsnpasa"; depends=[ecodist nlme]; }; - BIS = derive2 { name="BIS"; version="0.2.1"; sha256="0mngmchgc46wc9a7ksyqrvj6k46nm4ih7x69k3xijfia9bgkym0v"; depends=[dplyr readr rvest tidyr xml2]; }; BKPC = derive2 { name="BKPC"; version="1.0.1"; sha256="17gmhf6qq8jn2xzkqvjq60xzy0slz6kgfpd0d6hlpnf30ww7q923"; depends=[kernlab]; }; BLCOP = derive2 { name="BLCOP"; version="0.3.3"; sha256="08y9vmx3cknjvk6ngfwxlfnc03cqpj97i1ijrs1cw5sahjc0vmhc"; depends=[fBasics fMultivar fPortfolio knitr MASS quadprog rmarkdown RUnit timeSeries]; }; BLModel = derive2 { name="BLModel"; version="1.0.2"; sha256="0l5f2v5ggadmrci3qhhmxm3j9i6jii0anq5rv5vk50y2qzii2q15"; depends=[]; }; @@ -359,6 +359,7 @@ in with self; { BRACoD_R = derive2 { name="BRACoD.R"; version="0.0.1.2"; sha256="1p5fvmzkydask47hmz1fnss1sc1hrp1s7h28qn5q6fja0r52kzkz"; depends=[reticulate]; }; BRDT = derive2 { name="BRDT"; version="0.1.0"; sha256="1yv2fh4cc9h35l8cngpxnqa83a7bx79pr7c1gp9h84p1pigg8282"; depends=[]; }; BRETIGEA = derive2 { name="BRETIGEA"; version="1.0.3"; sha256="0q4phggz6smzd294znr1fp0gskpcwdbd6hnvvl3q3z1h7cpf40sn"; depends=[]; }; + BRINDA = derive2 { name="BRINDA"; version="0.1.3"; sha256="1nq7wlwwlyfff0rn4yv8bws0ibd7wssb1jd6ccc7xvhdb2bqv9kc"; depends=[berryFunctions data_table dplyr Hmisc rlang]; }; BRISC = derive2 { name="BRISC"; version="1.0.2"; sha256="1qkb98wlqyhi378darx62f5ymsr290pqq82msqwcj6ks0xi9mj2s"; depends=[matrixStats pbapply RANN rdist]; }; BRL = derive2 { name="BRL"; version="0.1.0"; sha256="13qi78v3057qn4hfby14sp26hy3ibl50f06x8gpak6gi76g8bhwi"; depends=[]; }; BRugs = derive2 { name="BRugs"; version="0.9-1"; sha256="1m3dlw6201bzf6fcm4qscpsmgjkpidwiil3m4iwfn0b0iv3dclcv"; depends=[coda]; }; @@ -410,6 +411,7 @@ in with self; { BayesBEKK = derive2 { name="BayesBEKK"; version="0.1.0"; sha256="0fykcmf54820krwy7q573gmlcrx96i94knx7rgzc83i287lnpnfg"; depends=[coda MTS mvtnorm]; }; BayesBP = derive2 { name="BayesBP"; version="1.1"; sha256="043msccrins1smaizmf7qc6q1cyjdzirw2ygnvi56lskib1cls7m"; depends=[iterators openxlsx]; }; BayesBinMix = derive2 { name="BayesBinMix"; version="1.4.1"; sha256="1b18qg0mjbmrilwqffrq33gw04fzask2xgj1bp4cli51cjf2slf7"; depends=[coda doParallel foreach label_switching]; }; + BayesCACE = derive2 { name="BayesCACE"; version="1.0"; sha256="0j7j9ir7x892mc53b16grb8l7q52d7ynk1d4la05bw92z28nfjrg"; depends=[coda forestplot lme4 MASS metafor mvtnorm Rdpack rjags]; }; BayesCR = derive2 { name="BayesCR"; version="2.1"; sha256="1qav7l64iqqdvr1v6c7hlzvbx7zbvsa55pyisvkq5rsayy1rdsl1"; depends=[mnormt mvtnorm rootSolve truncdist]; }; BayesCTDesign = derive2 { name="BayesCTDesign"; version="0.6.0"; sha256="1ym2v5ynmb28miwivyjx604vfsfi5ksmaha0far0ddq2cl06if2q"; depends=[eha ggplot2 reshape2 survival]; }; BayesCombo = derive2 { name="BayesCombo"; version="1.0"; sha256="01rzjja0xzvqyjivl8a9da13v13ylm4dwv4f27cmgz2znakfg5y8"; depends=[]; }; @@ -437,6 +439,7 @@ in with self; { BayesPPD = derive2 { name="BayesPPD"; version="1.0.3"; sha256="1w5jyvwwc7vk0wx41waq2ab92wb367d25hab55r2cs44vgcw04rl"; depends=[Rcpp RcppArmadillo RcppEigen RcppNumerical]; }; BayesPieceHazSelect = derive2 { name="BayesPieceHazSelect"; version="1.1.0"; sha256="0znbmv7crqycdx75jh02h6z8d6cifjszbrldv2yva4mkjxsydag5"; depends=[mvtnorm]; }; BayesPiecewiseICAR = derive2 { name="BayesPiecewiseICAR"; version="0.2.1"; sha256="1qrmw7zmygdzz84p76hyh2d8dx88b8xhbbd7radqm39g35zq5wz6"; depends=[mvtnorm]; }; + BayesPostEst = derive2 { name="BayesPostEst"; version="0.3.2"; sha256="0r05by4w80j6hb22v3ibj686ixxbj7lkxq499fciz5lqs4lxzf3h"; depends=[brms carData caTools coda dplyr ggplot2 ggridges HDInterval MCMCpack R2jags R2WinBUGS reshape2 rjags rlang ROCR rstanarm runjags texreg tidyr]; }; BayesProject = derive2 { name="BayesProject"; version="1.0"; sha256="0b1xqw7f9kfbmr8m6fl9d2fpwr364s4a5vdw57l6i5rm6lszyfh5"; depends=[Rcpp RcppEigen Rdpack]; }; BayesRGMM = derive2 { name="BayesRGMM"; version="1.1"; sha256="1clm01vp0irng082ifag9pnb6g8avxdskzy0jdy4c0n57hliwg6i"; depends=[abind batchmeans MASS msm mvtnorm plyr Rcpp RcppArmadillo RcppDist Rdpack reshape]; }; BayesRS = derive2 { name="BayesRS"; version="0.1.3"; sha256="0fhvnckabp0z1cdsbjgv3ijnzaxwhrk83fwcflgqbhvm3a9lzr77"; depends=[coda ggplot2 metRology reshape rjags]; }; @@ -623,7 +626,7 @@ in with self; { CCM = derive2 { name="CCM"; version="1.2"; sha256="1mhl7yppniybdffylddbbb65n7gmv029fb46wlsxm4yf2xkplmwy"; depends=[]; }; CCP = derive2 { name="CCP"; version="1.1"; sha256="07jxh33pb8llk1gx4rc80ppi35z8y1gwsf19zrca9w91aahcs8cx"; depends=[]; }; CCTpack = derive2 { name="CCTpack"; version="1.5.2"; sha256="1kkxsk9x4jz2bvldmba7fsri3zc1cjz15z0xicjmfc7lj72ngdig"; depends=[MASS mvtnorm polycor psych R2jags rjags]; }; - CCWeights = derive2 { name="CCWeights"; version="0.1.5"; sha256="0n3j118z4pwkq610j10i9svbsd6ibl3adh68zicgipihwhsarzsn"; depends=[bs4Dash dplyr DT fresh magrittr plotly readr readxl rmarkdown shiny]; }; + CCWeights = derive2 { name="CCWeights"; version="0.1.6"; sha256="0in3pl1n48jal6f7kiyw60by11vbga8vr45x0wywghd7dz60ppfv"; depends=[bs4Dash dplyr DT fresh magrittr plotly readr readxl rmarkdown shiny]; }; CCpop = derive2 { name="CCpop"; version="1.0"; sha256="10kgw3b98r0kn74w89znq6skgk8b3ldil6yb0hn5rlcf6lazjzca"; depends=[nloptr]; }; CDFt = derive2 { name="CDFt"; version="1.2"; sha256="19axaf3bh9gasnsfamd5ych1jn751scaplgwpmsf3liazcqqpa61"; depends=[]; }; CDLasso = derive2 { name="CDLasso"; version="1.1"; sha256="0n699y18ia2yqpk78mszgggy7jz5dybwsi2y56kdyblddcmz1yv7"; depends=[]; }; @@ -710,7 +713,6 @@ in with self; { CP = derive2 { name="CP"; version="1.6"; sha256="18zblf13riiz3mq3hkvg6vhiwjzpsn6mvgc2p0bqyldy98v4aisd"; depends=[survival]; }; CPAT = derive2 { name="CPAT"; version="0.1.0"; sha256="0zygncwww3cazwmx06bhzq0g41xcqfpw307azdhygc8jmcy6qj71"; depends=[purrr Rcpp RcppArmadillo Rdpack]; }; CPBayes = derive2 { name="CPBayes"; version="1.1.0"; sha256="1kw0r8spqm0s7cb3w5gplw67mhfmcbbf3ligngbary77ghkzirnb"; depends=[forestplot MASS mvtnorm purrr]; }; - CPE = derive2 { name="CPE"; version="1.5.1"; sha256="0n3pd6daj0mzhh547syh7nz8iys6q27igqngldb8zd4ib4778603"; depends=[rms survival]; }; CPGLIB = derive2 { name="CPGLIB"; version="1.0.1"; sha256="18gf0l7fqfi4vl0aylna6s7n6f4kwlaxkqnbdy2qgrvr5vs2j0qn"; depends=[Rcpp RcppArmadillo]; }; CPMCGLM = derive2 { name="CPMCGLM"; version="1.2"; sha256="07hx2ik5zg05w1h6i94398mp54q958phws9ydgp6syjqlp9dpf1p"; depends=[abind mvtnorm plyr]; }; CPNCoverageAnalysis = derive2 { name="CPNCoverageAnalysis"; version="1.1.0"; sha256="0w4yw6d41sgl1ypcmp3bxgz4p3cpnbqx73id17zklid4avr3y9yi"; depends=[]; }; @@ -753,7 +755,7 @@ in with self; { CVST = derive2 { name="CVST"; version="0.2-2"; sha256="05l3yzkfrbds09ah9cdwn2sn4ryhq78lz33ryzrgkv176jc8qjw5"; depends=[kernlab Matrix]; }; CVThresh = derive2 { name="CVThresh"; version="1.1.1"; sha256="19d7pslzj8r3z5gn3cplpz2h2ayz6k1nrfx3s2b7a8w1il3vmi69"; depends=[EbayesThresh wavethresh]; }; CVTuningCov = derive2 { name="CVTuningCov"; version="1.0"; sha256="1bwzis82lqwcqp2djy4bnd3vvjr47krlv3pdc5msh12wcs0xhs7n"; depends=[]; }; - CVXR = derive2 { name="CVXR"; version="1.0-9"; sha256="0dxhcz74x6p08ipbw9bn5bc3fzxymqahrsld04yq4r7gff2ifwh9"; depends=[bit64 ECOSolveR gmp Matrix osqp R6 Rcpp RcppEigen Rmpfr scs]; }; + CVXR = derive2 { name="CVXR"; version="1.0-10"; sha256="0cklfwsr3p4x4w7n6y3h3m4i3si8q0pwyp2vzv7kzawrmqc80484"; depends=[bit64 ECOSolveR gmp Matrix osqp R6 Rcpp RcppEigen Rmpfr scs]; }; CVarE = derive2 { name="CVarE"; version="1.1"; sha256="132bsqvdhalifn47xka23ikas1axxkg4jw8yja6ba8dflb8r753i"; depends=[mda]; }; CVcalibration = derive2 { name="CVcalibration"; version="1.0-1"; sha256="0ca582fnysrldlzxc3pihsph9pvdgygdh7sfzgxvr5fc3z1jbjzb"; depends=[]; }; CVglasso = derive2 { name="CVglasso"; version="1.0"; sha256="1bh09cd0yabhqv5yfahhvayx3f09yqapzl1yr9nc9xqwyx1d0cfd"; depends=[doParallel dplyr foreach ggplot2 glasso]; }; @@ -776,7 +778,6 @@ in with self; { CatDataAnalysis = derive2 { name="CatDataAnalysis"; version="0.1-3"; sha256="15wz7yjb83rd6d3xx0lb0p4x3ccnqpdkfanmbhykia50y8y32k5n"; depends=[]; }; CatDyn = derive2 { name="CatDyn"; version="1.1-1"; sha256="0gkaxs7apqhq7mp3chjsyhrnk3qkk11f8p7smmyj6h73888ry8jn"; depends=[BB optimx]; }; CatEncoders = derive2 { name="CatEncoders"; version="0.1.1"; sha256="1q9wzq06lac8z9y8b65alsxpb48bw8wqmifd893kknk51xq6r9kl"; depends=[data_table Matrix]; }; - CatPredi = derive2 { name="CatPredi"; version="1.2"; sha256="029haj44smz2k6vpk10bv3ri9qsy0ss2fn1mhw8vj42f3g8i39jb"; depends=[CPE mgcv rgenoud rms survival]; }; CatReg = derive2 { name="CatReg"; version="2.0.3"; sha256="02pxarc4v45w8ncx8hq084m69qgl9s2lkrv1biz60vrvl99dg016"; depends=[Rcpp Rdpack]; }; CateSelection = derive2 { name="CateSelection"; version="1.0"; sha256="194lk6anrb05gaarwdg8lj5wm6k61b4r702cja3nf3z91i8paqi7"; depends=[]; }; CauchyCP = derive2 { name="CauchyCP"; version="0.1.0"; sha256="012aw8cgrwwcsbs93nfsdlv1j72mc96gaxvdrhs9njqd9anamsgl"; depends=[survival]; }; @@ -798,7 +799,7 @@ in with self; { CerioliOutlierDetection = derive2 { name="CerioliOutlierDetection"; version="1.1.9"; sha256="0s3pd4y165v69m4wmg9jlc7dl4gz64la9yic67l3n4242wa84p19"; depends=[robustbase]; }; CfEstimateQuantiles = derive2 { name="CfEstimateQuantiles"; version="1.0"; sha256="1qf85pnl81r0ym1mmsrhbshwi4h1iv19a2wjnghbylpjaslgxp6i"; depends=[]; }; ChIPtest = derive2 { name="ChIPtest"; version="1.0"; sha256="1yn5b5s56k2dbhw6damxj18xbaiz180ym7fiq2i3p2gkcgwpddbz"; depends=[]; }; - ChainLadder = derive2 { name="ChainLadder"; version="0.2.13"; sha256="0zn7jz32x1hcbg1x51568mlpfmb1hyq2186gdv5mmipb86i68r9f"; depends=[actuar cplm ggplot2 lattice MASS Matrix mvtnorm statmod systemfit tweedie]; }; + ChainLadder = derive2 { name="ChainLadder"; version="0.2.14"; sha256="02zy3aj03mi6a2kb9g8bm2v8dhmswxp5b2d0mald28sa188cnp21"; depends=[actuar cplm ggplot2 lattice MASS Matrix statmod systemfit tweedie]; }; ChangePointTaylor = derive2 { name="ChangePointTaylor"; version="0.1.1"; sha256="1jfymyqdcyxfgn15y0iff7midkfd69fh3amz201idg6248g1y6n8"; depends=[bench dplyr ggplot2 magrittr purrr Rcpp rlang tidyr]; }; ChangepointTesting = derive2 { name="ChangepointTesting"; version="1.0"; sha256="1nb78b1jpp0wpy9ah2fxkh53hlmb2f82b68msbfhancb8zp2lclv"; depends=[]; }; ChannelAttribution = derive2 { name="ChannelAttribution"; version="2.0.4"; sha256="1m9fwlkd39q5dmlw71rasj2cjnlj03295ck9lgb7yl72v7sws22d"; depends=[Rcpp RcppArmadillo]; }; @@ -836,7 +837,7 @@ in with self; { ClimClass = derive2 { name="ClimClass"; version="2.1.0"; sha256="1r836md31z2r5d9xckkbalzbhm4kf5paljv71kxpy53q92k7yi91"; depends=[geosphere ggplot2 reshape2]; }; ClimDown = derive2 { name="ClimDown"; version="1.0.8"; sha256="0qcag9jwvhi9yss55wy5jxabrvym9hljn1fs5gfkzjs5hiwv3gxv"; depends=[abind fields foreach ncdf4 PCICt seas udunits2]; }; ClimInd = derive2 { name="ClimInd"; version="0.1-3"; sha256="0n5kd001nkpks16c3msvn2qvzyrjawa2rqwh8zph2qr5hgpwcpg7"; depends=[chron SPEI weathermetrics]; }; - ClimMobTools = derive2 { name="ClimMobTools"; version="0.3.9"; sha256="1mdzsmv0zc6jm5awppy9b1xqg29vy3j9lm2d88d7p6kag47z2n3n"; depends=[climatrends httr jsonlite Matrix PlackettLuce RSpectra]; }; + ClimMobTools = derive2 { name="ClimMobTools"; version="0.4.2"; sha256="0y0x5h281xr7bcwqzl19x5azysnf8f2bwqcncm2bnka1wvlckjby"; depends=[climatrends httr jsonlite Matrix PlackettLuce RSpectra sf]; }; ClimProjDiags = derive2 { name="ClimProjDiags"; version="0.1.3"; sha256="1grhg0ajf5lfm7pi5mm0hgp0cmln1jwrgkrfb4ci85fpqn96ddji"; depends=[climdex_pcic multiApply PCICt plyr]; }; ClinSigMeasures = derive2 { name="ClinSigMeasures"; version="1.0"; sha256="0fw89a1q92ck32z6w4zn1ldvky6ag1gi7b9bbv10mhmqhq4w3k58"; depends=[]; }; ClinicalTrialSummary = derive2 { name="ClinicalTrialSummary"; version="1.1.1"; sha256="0b5by4sn9yvrvxr9921yqsgp8ma3g1hi2qbp5j9m836db1zjhyla"; depends=[Rcpp]; }; @@ -908,7 +909,7 @@ in with self; { ComparisonSurv = derive2 { name="ComparisonSurv"; version="1.0.9"; sha256="1xvxkj0i59fq05df6szx4k32w2447mxcx3877l2myag4x6i6c74l"; depends=[muhaz survival survRM2 TSHRC]; }; Compind = derive2 { name="Compind"; version="2.3"; sha256="0im7wpgigkd3nwg6crnp4c3ndd3b6763f0f4v512r9a13hm48ms0"; depends=[Benchmarking boot GPArotation Hmisc lpSolve MASS nonparaeff np psych smaa spdep]; }; ComplexUpset = derive2 { name="ComplexUpset"; version="1.3.1"; sha256="185bwa45sknhxrg0m1cb7c2jblq6kxq3i9c0jzp3frxc5ybz0737"; depends=[colorspace ggplot2 patchwork scales]; }; - Compositional = derive2 { name="Compositional"; version="5.0"; sha256="06dlr3k72h3ahdzimwp9jhc332w4xv8qcmqmgl37f90wzkwrdljj"; depends=[codalm Directional doParallel emplik FlexDir foreach glmnet MASS mda mixture NlcOptim nnet pchc RANN Rfast Rfast2 sn]; }; + Compositional = derive2 { name="Compositional"; version="5.2"; sha256="02mbspn456kkfsdiz481z7qjppf0giiglwp1yy3gsa40qrw23199"; depends=[codalm Directional doParallel emplik FlexDir foreach glmnet MASS mda mixture NlcOptim nnet pchc RANN Rfast Rfast2 sn]; }; CompoundEvents = derive2 { name="CompoundEvents"; version="0.1.0"; sha256="03shw3016xc41a6by8pnpqs7mmnhs0qmg5aqd4hlfcy3dv2w9wkf"; depends=[]; }; Compounding = derive2 { name="Compounding"; version="1.0.2"; sha256="1xlb3ylwjv70850agir0mx79kcvs43h0n1sm22zcny3509s2r7lf"; depends=[hypergeo]; }; ConConPiWiFun = derive2 { name="ConConPiWiFun"; version="0.4.6.1"; sha256="1ziy646lbx297kia797xjxa8hyl826x1hiighyjslvnlvrhapx08"; depends=[Rcpp]; }; @@ -1103,7 +1104,7 @@ in with self; { DPWeibull = derive2 { name="DPWeibull"; version="1.7"; sha256="1z261fhx5dr3yxfy10jrnj5xpc5i8bcs169wqp9p32frwpz20ad3"; depends=[binaryLogic prodlim Rcpp RcppArmadillo survival truncdist]; }; DPtree = derive2 { name="DPtree"; version="1.0.1"; sha256="0d7zf695lwkx4gv50f08cbi3p3mjjay0qgrbmvybf9m15i4zmyd7"; depends=[MASS MCMCpack plyr Rdpack]; }; DRAYL = derive2 { name="DRAYL"; version="1.0"; sha256="0cf5pyx6nwh8srdylpnmymv3dr67fm6qqpwd1hvj1wmyfc8fznpp"; depends=[cubature pracma RConics rmutil]; }; - DRDID = derive2 { name="DRDID"; version="1.0.1"; sha256="10n0vcj0lcg0xypqmlbsws069xbgbxpgkc7kxbis04ksq7h43d5z"; depends=[BMisc trust]; }; + DRDID = derive2 { name="DRDID"; version="1.0.3"; sha256="1xlz4vc43myxximzcf87bk52pd5rplcbi5655m18xk7jx2l95ksb"; depends=[BMisc trust]; }; DRDRtest = derive2 { name="DRDRtest"; version="0.1"; sha256="1vrvwr441w526a80s0r2fwqlllvn05ir8v2152jz2wxrwhnpq1s0"; depends=[KernSmooth SuperLearner]; }; DREGAR = derive2 { name="DREGAR"; version="0.1.3.0"; sha256="15cplshs85r0z659mc7xmj5db7vc95wxs01c34isc22p8z0a287i"; depends=[msgps]; }; DRHotNet = derive2 { name="DRHotNet"; version="2.0"; sha256="1hj321qy6jvdicxksnrkzwhdgzjs7pl1bxj6bm0135qjpfmj3v8m"; depends=[maptools PBSmapping raster sp spatstat spatstat_core spatstat_geom spatstat_linnet spdep]; }; @@ -1160,7 +1161,6 @@ in with self; { DataClean = derive2 { name="DataClean"; version="1.0"; sha256="0wkafjyp6c2mx7g1bpz2pbxyl5nm2wba2hly8miizv0fdc762za5"; depends=[xlsx XML]; }; DataCombine = derive2 { name="DataCombine"; version="0.2.21"; sha256="0iwb4726bk0cjhay694dp43b1553yyk9lpxbncs85kz229b26arm"; depends=[data_table dplyr]; }; DataEditR = derive2 { name="DataEditR"; version="0.1.3"; sha256="0s1c6hzih94mcxkjlc3qf36d5pzbaj7rhi0fsm31ps3224dcn4p4"; depends=[htmltools miniUI rhandsontable rstudioapi shiny shinyBS shinyjs shinythemes]; }; - DataEntry = derive2 { name="DataEntry"; version="0.9-3"; sha256="0gfsg7wfwy88x7y1dwpgwi6fkizjnhrzj0a5ij70y4a4sjmyiy55"; depends=[digest gWidgets2 gWidgets2RGtk2 RGtk2]; }; DataExplorer = derive2 { name="DataExplorer"; version="0.8.2"; sha256="0451fnlaqvyzpqhn25g6lj2svjfsfaxii9vmwhqw7p29fl71zaln"; depends=[data_table ggplot2 gridExtra networkD3 reshape2 rmarkdown scales]; }; DataFakeR = derive2 { name="DataFakeR"; version="0.1.2"; sha256="0158ffj6yfvdirxar39rl6n730sza0lzq48v65p43whz6jbf9ybb"; depends=[dplyr glue magrittr purrr R6 tibble tidygraph yaml]; }; DataGraph = derive2 { name="DataGraph"; version="1.2.5"; sha256="0f5wh2lyddr48wdcqgk1y1jbs9q9rim86v4g1c7m4xgnvyp81mih"; depends=[Rcpp]; }; @@ -1197,7 +1197,7 @@ in with self; { DensParcorr = derive2 { name="DensParcorr"; version="1.1"; sha256="1ifkg7cpimf27yhr60rks77r16kmhwa5h10wv7b64sbfncnyzfmj"; depends=[clime gplots]; }; Density_T_HoldOut = derive2 { name="Density.T.HoldOut"; version="2.00"; sha256="0kh5nns1kqyiqqfsgvxhx774i2mf4gcim8fp5jjyq577x4679r31"; depends=[histogram]; }; DepLogo = derive2 { name="DepLogo"; version="1.2"; sha256="13y3akmrj5x1mn1sgha1jryzswg4kqxwswbm3m5z92mcm2zw4r9l"; depends=[]; }; - DepthProc = derive2 { name="DepthProc"; version="2.1.3"; sha256="1dq5y6fgmm00imkim4v2s6kn4z5qnwa0dkfkcq4pap7imvi35aab"; depends=[colorspace geometry ggplot2 lattice MASS np Rcpp RcppArmadillo rrcov sm zoo]; }; + DepthProc = derive2 { name="DepthProc"; version="2.1.4"; sha256="0fa15qcga72db040rscmvp31jdi477wxyyx4c3mwmpjhf81a5978"; depends=[colorspace geometry ggplot2 lattice MASS np Rcpp RcppArmadillo rrcov sm zoo]; }; Deriv = derive2 { name="Deriv"; version="4.1.3"; sha256="130g3mv0z9sqs6y23a0a94512iiw05yr6fp378vhdxxbignzbnyv"; depends=[]; }; DescTools = derive2 { name="DescTools"; version="0.99.43"; sha256="1zx4wwry7pph21q37r0r1vgx616pki232ych2wl9z2s2fmclwg4c"; depends=[BH boot data_table Exact expm gld MASS mvtnorm Rcpp rstudioapi]; }; DescToolsAddIns = derive2 { name="DescToolsAddIns"; version="1.9"; sha256="12zwhy05wkwxldjyjxqcfsww73pxyni17c5g3b0slrxk6ag13wl7"; depends=[DescTools foreign manipulate rstudioapi writexl]; }; @@ -1241,7 +1241,7 @@ in with self; { DirectEffects = derive2 { name="DirectEffects"; version="0.2.1"; sha256="0cjqp4gam1psd11d6h99pi3ramnaybp6bij86wbgqji2icqlvghg"; depends=[Formula glue sandwich]; }; DirectStandardisation = derive2 { name="DirectStandardisation"; version="1.3"; sha256="1qlfvzlig3a2v78fiq6sbbpxklmjczikxdw57m6mqngzrl9vdl2g"; depends=[]; }; DirectedClustering = derive2 { name="DirectedClustering"; version="0.1.1"; sha256="1shdqz0c5bbgknvfqr3ais26cb5mpywnah3d3584w97sy8v7gxm2"; depends=[igraph]; }; - Directional = derive2 { name="Directional"; version="5.1"; sha256="1zx0554m40nipxg6dwh6mwl3z775m3lfby1q96hn43axvjnhhv7c"; depends=[bigstatsr doParallel foreach ggplot2 magrittr RANN Rfast Rfast2 rgl rnaturalearth rnaturalearthdata sf]; }; + Directional = derive2 { name="Directional"; version="5.2"; sha256="19vz0i3q4560fknvr9d7b5plq3xvydrw2kk91qngrx5dsml0mx0k"; depends=[bigstatsr doParallel foreach ggplot2 magrittr RANN Rfast Rfast2 rgl rnaturalearth sf]; }; DirichletReg = derive2 { name="DirichletReg"; version="0.7-1"; sha256="1ql5mwb7zb06y9j6inrlngq7c15as4j17wd8kc71fxs0a2jdj7xi"; depends=[Formula maxLik]; }; DisHet = derive2 { name="DisHet"; version="1.0.0"; sha256="056jcs1qpiyadnmlzd0cj4kp0qzkichxi0pdnxypyq1fsqnpvan3"; depends=[gtools matrixStats]; }; DisImpact = derive2 { name="DisImpact"; version="0.0.15"; sha256="1cksc68gqvlah6rzlh1h7glsl55v9kxkayvv05hz6fkcds01qkga"; depends=[dplyr purrr rlang tidyr tidyselect]; }; @@ -1272,7 +1272,7 @@ in with self; { DockerParallel = derive2 { name="DockerParallel"; version="1.0.4"; sha256="1fgs2f5czb05fiqxqp00qggni041ml4s3x05h9n4mmka9mwxi34b"; depends=[jsonlite]; }; Dodge = derive2 { name="Dodge"; version="0.9-2"; sha256="0767n6hyspqrv5cgx3ghhai0qffj6haga7s86pv7mq8zvjcxjlzv"; depends=[]; }; Dominance = derive2 { name="Dominance"; version="1.2.0"; sha256="1z2gcs7myf90986gzw9g3914ph5cyg6pq6k53h4z566x883q8maz"; depends=[chron igraph]; }; - DominoDataCapture = derive2 { name="DominoDataCapture"; version="0.1.0"; sha256="1wh5khdqhp0hqr484sfcaxryn6abzyy4skdd8kfwqbw9ppb8gsah"; depends=[lgr rjson uuid]; }; + DominoDataCapture = derive2 { name="DominoDataCapture"; version="0.1.1"; sha256="168nvarg58x0w7bi365rd810gl5xz1b2kv8jv0myb7qwxdw1igm4"; depends=[lgr rjson uuid]; }; DominoPredictionLogging = derive2 { name="DominoPredictionLogging"; version="0.1.0"; sha256="1qzh8inzqk1s6cw9bsl7hazdf6cbfr11zs22723wl4xs31inp1lg"; depends=[lgr rjson uuid]; }; DoseFinding = derive2 { name="DoseFinding"; version="1.0-2"; sha256="15wpr8wiqjar9hlgcv8y2gjxv6531q3b69jxh2kq10k7bni3rshb"; depends=[lattice mvtnorm]; }; DoubleCone = derive2 { name="DoubleCone"; version="1.1"; sha256="1kbvsj93nn2306s6pgqiiznmlcn2nqsgcxinihl613ivczxhzpqg"; depends=[coneproj MASS Matrix]; }; @@ -1327,7 +1327,7 @@ in with self; { EDMeasure = derive2 { name="EDMeasure"; version="1.2.0"; sha256="1gyv86vip0a3939dbbwz29xkqzncw24r68fzykdjnv3b995510iv"; depends=[dHSIC energy rBayesianOptimization]; }; EDNE_EQ = derive2 { name="EDNE.EQ"; version="1.0"; sha256="13aflnpznpzjrrdrn0r7v2mch6hjd77s6c3l7mnc2p59vq7mzmpg"; depends=[MASS]; }; EDOIF = derive2 { name="EDOIF"; version="0.1.3"; sha256="1lq4j5axybhv34mdsz0rn5nz9x3rzjf6bczzfzrf75k6pwqxim1w"; depends=[boot distr ellipsis ggplot2 igraph simpleboot]; }; - EDOtrans = derive2 { name="EDOtrans"; version="0.1.0"; sha256="0xsfh3aib21d6mm3a0ii28m216vgdz8hqx859mxa6bzplp0yhich"; depends=[ABCanalysis AdaptGauss ClusterR DataVisualizations DistributionOptimization ggplot2 rlang]; }; + EDOtrans = derive2 { name="EDOtrans"; version="0.2.0"; sha256="0bycq28ajyvwx7h4wpk6b1cijgy12fv8f8x42sm7glwbmfx3aw3z"; depends=[ABCanalysis opGMMassessment]; }; EEM = derive2 { name="EEM"; version="1.1.1"; sha256="0w20kakgcpyhfi7fcrss4w67pbaj87hi2scy7g05q3sg2ygac7gj"; depends=[colorRamps ggplot2 R_utils reshape2 sp]; }; EEMDSVR = derive2 { name="EEMDSVR"; version="0.1.0"; sha256="0m28rrw7lg3sx2aviqphsid2rsp7zksd3fcvk7pxfw16z90y7ifd"; depends=[e1071 Rlibeemd]; }; EEMDelm = derive2 { name="EEMDelm"; version="0.1.0"; sha256="18m4b22sar14admlhagjdxzq16ynvam2c0cv3z168x8xh6zv2xpr"; depends=[forecast nnfor Rlibeemd]; }; @@ -1338,6 +1338,7 @@ in with self; { EFAutilities = derive2 { name="EFAutilities"; version="2.1.1"; sha256="0kdwdjv4c9rfy49qs7a4134vwa2sm2pcam17a3xii2dq8mghg1za"; depends=[GPArotation MASS mvtnorm plyr]; }; EFDR = derive2 { name="EFDR"; version="1.2"; sha256="1k6y2qxfw5py1brh25apmzqm00y3a458x0wrrmdg604g1m9zlkg5"; depends=[copula doParallel dplyr foreach gstat Matrix sp tidyr waveslim]; }; EFS = derive2 { name="EFS"; version="1.0.3"; sha256="1q8cf8dnxpv5s3lr9145y0wjhak4rz18dzah4xfs5qr4c8nlpl54"; depends=[party pROC randomForest ROCR]; }; + EGAnet = derive2 { name="EGAnet"; version="1.0.0"; sha256="0mr63x5gx8yy9gp19glvqcsdmxbd29mnv4v29kjpfr21ij46h60a"; depends=[dplyr fitdistrplus GGally ggplot2 ggpubr glasso igraph lavaan Matrix network NetworkToolbox qgraph semPlot wTO]; }; EGRET = derive2 { name="EGRET"; version="3.0.6"; sha256="0klpfrq2392s56x5q5pxvli4m7ivn146dwyh1svqz9pngqnwbif3"; depends=[dataRetrieval fields foreach MASS survival truncnorm]; }; EGRETci = derive2 { name="EGRETci"; version="2.0.4"; sha256="1g01a03smn5yp261cyk3x310m1mcv4bqyh8y123wam9gpa7dxrp6"; depends=[binom EGRET]; }; EHR = derive2 { name="EHR"; version="0.4-4"; sha256="0b42ny3xc936qgbfgibywpmancrbdvkcwwhy55lbqlm8xhzyr6s8"; depends=[data_table lubridate pkdata]; }; @@ -1459,7 +1460,7 @@ in with self; { EpiEstim = derive2 { name="EpiEstim"; version="2.2-4"; sha256="12zv1mlb0gqsvff1s0fvqgxqk42c7y9gz3h94mjmf1wbmhsjcqnf"; depends=[coarseDataTools coda fitdistrplus ggplot2 gridExtra incidence reshape2 scales]; }; EpiILM = derive2 { name="EpiILM"; version="1.5.2"; sha256="0drs4qywx9axs7k5qk7sp5r3g8pykn4lqqbm0hxyl24r6b5l3d6b"; depends=[adaptMCMC coda LaplacesDemon]; }; EpiILMCT = derive2 { name="EpiILMCT"; version="1.1.7"; sha256="1yjcjxf5m1qbb6p09g34wkr4q13g65ly11kxh95r22cdl85jmlq3"; depends=[coda igraph]; }; - EpiModel = derive2 { name="EpiModel"; version="2.1.0"; sha256="1vhbjrxj3q8xkin44m576rkjsl5qw5c8hxwqmjj4n8fjk9xyj20r"; depends=[ape deSolve doParallel ergm foreach ggplot2 lazyeval network networkDynamic RColorBrewer statnet_common tergm tergmLite]; }; + EpiModel = derive2 { name="EpiModel"; version="2.2.0"; sha256="1hpar16srsz0jnf44iqh376kd0qb4zfidkf09zzby9iicij7rv64"; depends=[ape deSolve doParallel dplyr ergm foreach ggplot2 lazyeval network networkDynamic RColorBrewer Rcpp statnet_common tergm tibble]; }; EpiNow2 = derive2 { name="EpiNow2"; version="1.3.2"; sha256="1rcyhk0f18asrym9zd7hr5ss7aw2dd2m5wrjcsqkr8q7x6apwh3g"; depends=[BH cowplot data_table futile_logger future future_apply ggplot2 lifecycle lubridate patchwork progressr purrr R_utils Rcpp RcppEigen rlang rstan runner scales StanHeaders truncnorm]; }; EpiReport = derive2 { name="EpiReport"; version="1.0.2"; sha256="1dh9rjdjgmwzvfslzgnmd37ipj7ydbn4pnngz4sw7nknqy7r4dpx"; depends=[dplyr flextable ggplot2 officer png tidyr tidyselect zoo]; }; EpiStats = derive2 { name="EpiStats"; version="1.5-1"; sha256="0swxww4x0qqlby4m8xw58jr5x2ml5z896m8w0f1v0mr7kf1v6fpi"; depends=[dplyr epiR]; }; @@ -1561,7 +1562,7 @@ in with self; { FIT = derive2 { name="FIT"; version="0.0.6"; sha256="1nkjms9cvigc9sjha1krzhd3nmwsfh8pi0f1plf5k8zpb773zzb2"; depends=[gglasso MASS Rcpp RcppEigen XML]; }; FITSio = derive2 { name="FITSio"; version="2.1-6"; sha256="1qch6z9r8h95jijjdwsi81majgacl42ryzlkn0m1wifkly9mjjrb"; depends=[]; }; FKF = derive2 { name="FKF"; version="0.2.2"; sha256="1vcadh3c3j7d7dlp810n6bifc23z8l210agyi0v6yha1iis10p9c"; depends=[]; }; - FKF_SP = derive2 { name="FKF.SP"; version="0.1.2"; sha256="0np74ssq6q293mkhjag1fbbyzawlbf3pq7sdfs74b7b3dlk9450i"; depends=[curl mathjaxr Rdpack]; }; + FKF_SP = derive2 { name="FKF.SP"; version="0.1.3"; sha256="0pbqpaddk5yhh0lycqncfc029md4if93p07jvnixjn0mrraxj6b5"; depends=[curl mathjaxr Rdpack]; }; FKSUM = derive2 { name="FKSUM"; version="0.1.4"; sha256="02nicfw0wcprdg0p2p44g740j6bjf6xgzjxcvyfcbcsbr6bpjknx"; depends=[MASS rARPACK Rcpp RcppArmadillo]; }; FLAME = derive2 { name="FLAME"; version="2.1.0"; sha256="0sq8v7najcqwqc9fxp05mmqa09niqjc7ypf4b3jdpmng1srpf643"; depends=[glmnet gmp]; }; FLLat = derive2 { name="FLLat"; version="1.2-1"; sha256="0306bpwp2az4x4m5sv88hlh7vs0y5isfby7lxrn2gjnk76gg6mw1"; depends=[gplots]; }; @@ -1579,7 +1580,7 @@ in with self; { FMsmsnReg = derive2 { name="FMsmsnReg"; version="1.0"; sha256="0d58n7lz8d6xgzvyznmhw1byshyiiwk8dc462qr18cl51p0lqnkv"; depends=[mvtnorm]; }; FNN = derive2 { name="FNN"; version="1.1.3"; sha256="0cllqlnynm5yaj4r64mqyyfc8phkb38rwssq8k8ikgfgr4jklxny"; depends=[]; }; FOCI = derive2 { name="FOCI"; version="0.1.3"; sha256="0iax5569a0v18j2l52mw26yimx11fqqbxj5q7jgba9jf7ylp410w"; depends=[data_table gmp proxy RANN]; }; - FORTLS = derive2 { name="FORTLS"; version="1.0.5"; sha256="0k90x5vrg97nndif4grg14240m6gj8jsfr1lp3rgcx8h26gdlgq7"; depends=[dbscan Distance ggvoronoi htmlwidgets lidR moments plotly progress raster Rcpp RcppEigen RCSF scales sp tidyr vroom]; }; + FORTLS = derive2 { name="FORTLS"; version="1.0.6"; sha256="0w6a17n1f9vq7j9ajlqkrbxgajhh4qrj5lwfqfkk9g1h5vsr8xn2"; depends=[dbscan Distance ggvoronoi htmlwidgets lidR moments plotly progress raster Rcpp RcppEigen RCSF scales sp tidyr vroom]; }; FPCA2D = derive2 { name="FPCA2D"; version="1.0"; sha256="18bb90ppd9gd8pg9jxfyfkmlsaqk8w25fgaj9fk18ybm2nhsxqm6"; depends=[corpcor]; }; FPCA3D = derive2 { name="FPCA3D"; version="1.0"; sha256="1hrk9caad2s76dx59clxhia45a85khk1y2ii7955f336x55q34a5"; depends=[]; }; FPDclustering = derive2 { name="FPDclustering"; version="2.0"; sha256="04anczbml5mpxi65qalafs5q4pign6abhqsc2birvvg23r3hhhfh"; depends=[cluster ExPosition GGally ggplot2 klaR MASS mvtnorm rootSolve ThreeWay]; }; @@ -1698,6 +1699,7 @@ in with self; { FourgameteP = derive2 { name="FourgameteP"; version="0.1.0"; sha256="15yn47737768fkjjv8ykc9lw7x58pq44k90d9d4c9hp20zw5f3by"; depends=[]; }; FrF2 = derive2 { name="FrF2"; version="2.2-2"; sha256="048awbsyzpjmr0kmz3k5yi5vksa9iiffabp6q8xsww097vcngxzb"; depends=[DoE_base igraph scatterplot3d sfsmisc]; }; FrF2_catlg128 = derive2 { name="FrF2.catlg128"; version="1.2-1"; sha256="0i4m5zb9dazpvmnp8wh3k51bm0vykh4gncnhdg71mfk4hzrfpdac"; depends=[FrF2]; }; + FracKrigingR = derive2 { name="FracKrigingR"; version="1.0.0"; sha256="08ai69wnpa4l1gpmgrs9c9ad9h56h0x55v3gnbci30yxkivbnvxw"; depends=[clusterGeneration psych]; }; FractalParameterEstimation = derive2 { name="FractalParameterEstimation"; version="1.1.2"; sha256="16xm2g723dm1n1h6as6yvy92sigzhj31f269g5rrzqjcd4d5m8an"; depends=[]; }; Fragman = derive2 { name="Fragman"; version="1.0.9"; sha256="03vmvmnyza4i46v1awkdjz6ccbsiq49dm0mlmwsm801rq6yfihgp"; depends=[]; }; Frames2 = derive2 { name="Frames2"; version="0.2.1"; sha256="0xbz19v5r1h15p8mf94vacw04h3kvmm88ayy4b1aqxrd925n63mw"; depends=[MASS nnet sampling]; }; @@ -1734,7 +1736,7 @@ in with self; { GADAG = derive2 { name="GADAG"; version="0.99.0"; sha256="1ycg48idrq2yrk1fxs16yl5wwg3kbfki8xppmh311rrzf75c6z4g"; depends=[igraph MASS Rcpp RcppArmadillo]; }; GADMTools = derive2 { name="GADMTools"; version="3.9-1"; sha256="0l62gsd3sdyvhsw7bqvgn3fv15xwm13y9nsm8r9fgcqbfpw45g32"; depends=[classInt dplyr ggmap ggplot2 ggspatial gridExtra jsonlite lattice maptools prettymapr raster RColorBrewer rgdal rgeos rosm sf sp stringr]; }; GAIPE = derive2 { name="GAIPE"; version="1.0"; sha256="04iarbwxrhn48bk329wxis7ifzndi67kpjx6dcakawkh3g2mzsfz"; depends=[]; }; - GALLO = derive2 { name="GALLO"; version="1.2"; sha256="068cb8v3hb9asn4x2vfgzqvd6ygbivj8206h6is35wvz14pphml5"; depends=[circlize data_table doParallel dplyr DT foreach ggplot2 lattice RColorBrewer rtracklayer stringr unbalhaar webshot]; }; + GALLO = derive2 { name="GALLO"; version="1.3"; sha256="0nfzm5cm93m3x0vqmjvhxznj5i913ssn9awpfvk932j829kz6zbc"; depends=[circlize data_table doParallel dplyr DT foreach ggplot2 lattice RColorBrewer rtracklayer stringr unbalhaar webshot]; }; GAMens = derive2 { name="GAMens"; version="1.2.1"; sha256="1z10wxcg277fra2lch464l0kb02lspw9qr1i2wmq11wcz0k9qnl8"; depends=[caTools gam mlbench]; }; GANPA = derive2 { name="GANPA"; version="1.1"; sha256="19nq1nlpb1lr2b9i5ckyl5m6daalrqkpx386r6i25qfvaywxl2bf"; depends=[GANPAdata]; }; GANPAdata = derive2 { name="GANPAdata"; version="1.0"; sha256="0mhdadl7zgsacn59ym42magg3214k1xhabwn78fv7kgccszcgc86"; depends=[]; }; @@ -1804,6 +1806,7 @@ in with self; { GK2011 = derive2 { name="GK2011"; version="0.1.3"; sha256="13vafhbgcsj485f12qv962y07v3hil3pla51vkl2b030amzy86jv"; depends=[]; }; GLDEX = derive2 { name="GLDEX"; version="2.0.0.7"; sha256="1w5ahwbnz9xsn3rdxzcxxvc6m5cgq46nln3i5v8vp4imrs8aafb3"; depends=[cluster]; }; GLDreg = derive2 { name="GLDreg"; version="1.0.7"; sha256="1wjrr4x1k0fz8nx9idb4ysamldypriiypj96b5v028lx38jwsk3l"; depends=[ddst GLDEX]; }; + GLIDE = derive2 { name="GLIDE"; version="1.0.3"; sha256="0jy3l1c2wls3hq63jny9zg2mjkn332ki6dk7pfcqyk0nfxi5grw7"; depends=[doParallel foreach MASS]; }; GLMMRR = derive2 { name="GLMMRR"; version="0.5.0"; sha256="072zwi1rs6d84iszn09v5g19bkpla19nfqk4pq40ad8368zkbhcm"; depends=[lattice lme4 RColorBrewer]; }; GLMMadaptive = derive2 { name="GLMMadaptive"; version="0.8-2"; sha256="12lz7rkd4jfwp3gpwp2awzdkdw1qpbdi2l1b48s1drzjymjk0m0g"; depends=[MASS matrixStats nlme]; }; GLMaSPU = derive2 { name="GLMaSPU"; version="1.0"; sha256="0zx2bza5v5cfp9v7hf42s57522b6prawcwl77aa3kvjcnb0ish6g"; depends=[MASS mnormt mvtnorm Rcpp RcppArmadillo]; }; @@ -1878,7 +1881,7 @@ in with self; { GUILDS = derive2 { name="GUILDS"; version="1.3"; sha256="0zl6x0vn93ybps63fqazvd93f2zwdq0rqqrp7d6n5rnamx99mm8d"; depends=[pracma Rcpp]; }; GUIProfiler = derive2 { name="GUIProfiler"; version="2.0.1"; sha256="10m4d7f2rhw6cmkrnw3jh4iqlkfphf4v7mpfwzw17laq0ncmsx5r"; depends=[graph MASS Nozzle_R1 proftools Rgraphviz rstudioapi]; }; GUTS = derive2 { name="GUTS"; version="1.1.1"; sha256="05njlykhxs62k5cjrfwgbqyckbvf2jxjshg3avf6vhwwf58qyjq9"; depends=[Rcpp]; }; - GUniFrac = derive2 { name="GUniFrac"; version="1.3"; sha256="1bl7g80fcb71f85wp507n8w5lfhnh8w34jrmkdgs93y1igqk0aa3"; depends=[ape dirmult MASS Matrix matrixStats Rcpp rmutil statmod vegan]; }; + GUniFrac = derive2 { name="GUniFrac"; version="1.4"; sha256="1dya9shxcd1xbwhlk1vqpxag2vnwzca2lddcy1kfn8yjrws8slk8"; depends=[ape dirmult foreach ggplot2 ggrepel lmerTest MASS Matrix matrixStats modeest Rcpp rmutil statmod vegan]; }; GVARX = derive2 { name="GVARX"; version="1.3"; sha256="00iqwkshp1i9338x9khh8hyszad6150qb11jlvky5fm488wcw1y3"; depends=[lmtest lubridate sandwich strucchange tsDyn urca vars xts]; }; GWASExactHW = derive2 { name="GWASExactHW"; version="1.01"; sha256="19qmk8h7kxmn9kzw0x4xns5p3qqz27xkqq4q6zmh4jzizd0fsl78"; depends=[]; }; GWASbyCluster = derive2 { name="GWASbyCluster"; version="0.1.7"; sha256="0ivlkxbh8m23vbnjfmhk0vfczd5b8lzy9w4gm1m6jpvdm40kn70x"; depends=[Biobase limma rootSolve snpStats]; }; @@ -1912,6 +1915,7 @@ in with self; { GenForImp = derive2 { name="GenForImp"; version="1.0"; sha256="1wcvi52fclcm6kknbjh4r9bpkc2rg8nk6cddnf5j8zqbvrwf4k5x"; depends=[mvtnorm sn]; }; GenHMM1d = derive2 { name="GenHMM1d"; version="0.1.0"; sha256="0liqfjx17xs8si15yrb4032ac33ibxn2xm010b244gfhl1wr2ar5"; depends=[actuar doParallel EnvStats extraDistr foreach ggplot2 matrixcalc reshape2 rmutil ssdtools VaRES VGAM]; }; GenKern = derive2 { name="GenKern"; version="1.2-60"; sha256="12qmd9ydizl7h178ndn25i4xscjnrssl5k7bifwv94m0wrgj4x6c"; depends=[KernSmooth]; }; + GenMarkov = derive2 { name="GenMarkov"; version="0.1.0"; sha256="06bq43ry25g75qxlnrz02s393sv4r5v7m8gw0d96gpmldc76aax1"; depends=[alabama fastDummies Hmisc matrixcalc maxLik nnet]; }; GenOrd = derive2 { name="GenOrd"; version="1.4.0"; sha256="17mfrj1fwj8mri1w0bl2pw1rqriidmd67i7gpn9v56g9dzw5rzms"; depends=[MASS Matrix mvtnorm]; }; GenSA = derive2 { name="GenSA"; version="1.1.7"; sha256="03xqwxm7v7rnihx730a4p65dfwhjh4345r3d78y0qxxplk8d76cx"; depends=[]; }; GenTag = derive2 { name="GenTag"; version="1.0"; sha256="0yirl7n7p7w1dfbbr48v1151qyqm7p9m00vc6jq0s2d6bjdspin9"; depends=[]; }; @@ -1927,6 +1931,7 @@ in with self; { GeneralizedUmatrix = derive2 { name="GeneralizedUmatrix"; version="1.2.2"; sha256="055q0rspjw5yin0kia6gcax89cfdmgvgvj1zjh4iswfs48n9xdcj"; depends=[ggplot2 Rcpp RcppArmadillo]; }; GeneticSubsetter = derive2 { name="GeneticSubsetter"; version="0.8"; sha256="0bd4snv3dwabc7mknmd2rjmffj67xq535x0bycajhd83d1jhjars"; depends=[]; }; GenoScan = derive2 { name="GenoScan"; version="0.1"; sha256="0p98imfvvz7l94kim3pxypyjs2pbxng4a2nagbafbady82ylr2vi"; depends=[data_table MASS Matrix seqminer SKAT]; }; + GenomeAdapt = derive2 { name="GenomeAdapt"; version="1.0.0"; sha256="0jsxqhx62vbsr0hcqk9wrfsg3l3wbnx64pzxx18ps366vg7fxmii"; depends=[gdsfmt qvalue robust SNPRelate]; }; GenomeAdmixR = derive2 { name="GenomeAdmixR"; version="2.1.1"; sha256="1c8d2s13hibwymxxra2gbma78d44zx9cbwm4901iz1prdn4p8vl6"; depends=[ggplot2 ggridges hierfstat Rcpp RcppArmadillo RcppParallel rlang stringr tibble vcfR]; }; GenomicMating = derive2 { name="GenomicMating"; version="2.0"; sha256="02v1pkarmardf7g8hf2n4jj4cq4707g5lcc7gnwsiyyh7pknd1y6"; depends=[dplyr emoa kohonen LowRankQP magrittr plotly qtl Rcpp RcppArmadillo scatterplot3d SOMbrero]; }; GenomicTools = derive2 { name="GenomicTools"; version="0.2.9.7"; sha256="196shxbrcgiwaa7aav2aipsbj1smrkbhinn44aw9qfvz2x9zdz0m"; depends=[circlize data_table GenomicTools_fileHandler gMWT Rcpp RcppArmadillo snpStats stringr]; }; @@ -2013,7 +2018,7 @@ in with self; { HCR = derive2 { name="HCR"; version="0.1.1"; sha256="14s46dyw3ifp3pwwlcwbbl47i6hy2whjj1n65i28am5a33nycgha"; depends=[data_table]; }; HCTR = derive2 { name="HCTR"; version="0.1.1"; sha256="1hg8mpallwxpmamk6q8x87w5hlqqwvbahfw5zmr9pisiagbwcsay"; depends=[glmnet harmonicmeanp MASS ncvreg Rdpack]; }; HCmodelSets = derive2 { name="HCmodelSets"; version="1.1.2"; sha256="05w742g89r0hr90awwjqlszib2jjfly52l9c7ag3n22vg4d1ixw1"; depends=[ggplot2 mvtnorm survival]; }; - HDBRR = derive2 { name="HDBRR"; version="1.1.2"; sha256="0xaj6h7llkmqizmcmivislx3yszqypdcnlrrs8xzandfbzfkyk1q"; depends=[bigstatsr MASS numDeriv]; }; + HDBRR = derive2 { name="HDBRR"; version="1.1.3"; sha256="1awz9s7g5fcy2anrq3fmyjcvi3kr2b3vmky63nv964821b8x9vh1"; depends=[bigstatsr MASS numDeriv]; }; HDCI = derive2 { name="HDCI"; version="1.0-2"; sha256="0wxbv54kbygymhh4r7052vnbj603c1kya01ykvmqzzkjyyfzidkz"; depends=[doParallel foreach glmnet iterators lattice Matrix mvtnorm slam]; }; HDCurves = derive2 { name="HDCurves"; version="0.1.0"; sha256="1ifcbwcqgdxicqxcqrsl9kp3zadxhijpwff8ln309378vybr3gh1"; depends=[]; }; HDDesign = derive2 { name="HDDesign"; version="1.1"; sha256="1jim4h9bwn8r637va7m81kwwsfwyzs9pzn5a9i7c8xz8b1x191bj"; depends=[]; }; @@ -2025,7 +2030,7 @@ in with self; { HDPenReg = derive2 { name="HDPenReg"; version="0.94.7"; sha256="16kmx3lddjvz8k7sric0s9ajhlgp62gf1zkyiscaf7w0pjwzin28"; depends=[Matrix Rcpp rtkore]; }; HDShOP = derive2 { name="HDShOP"; version="0.1.2"; sha256="0qnxgp7fjinj9c96w724nxvmb2xbihj2wd6ysibr5dk4rvlq16p0"; depends=[Rdpack]; }; HDSpatialScan = derive2 { name="HDSpatialScan"; version="1.0.2"; sha256="0j6frhnxbchy2r425zhx952vvdivrpcrq0440rr4mbr4rla2ci4s"; depends=[DT fmsb matrixStats plotrix purrr Rcpp RcppArmadillo rgdal rgeos sp SpatialNP swfscMisc TeachingDemos]; }; - HDTSA = derive2 { name="HDTSA"; version="1.0.0"; sha256="1mphx55ibw8rlv5cz7vr8m3sgyl0qz0nfk26mcnnfsk38x6hl9zc"; depends=[clime Rcpp RcppEigen sandwich]; }; + HDTSA = derive2 { name="HDTSA"; version="1.0.1"; sha256="09b3jz552v3hmnhi6ag0dhc7nr5gdc688mcf3n9q8qzvc3l6dglc"; depends=[clime Rcpp RcppEigen sandwich]; }; HDclassif = derive2 { name="HDclassif"; version="2.2.0"; sha256="1l5zxhayhzh7q50ycl481hy0br66ylxyvzw1ahmjjrdkm8s3czyj"; depends=[MASS rARPACK]; }; HDclust = derive2 { name="HDclust"; version="1.0.3"; sha256="18l4qp261gj3kscfxs3s03kmb9y5ml31vnpgpm1iy125bks4mr2y"; depends=[Rcpp RcppProgress Rtsne]; }; HDcpDetect = derive2 { name="HDcpDetect"; version="0.1.0"; sha256="0ai35d9df5pmva52sb1rr20f11h0mbal6d179g865b7w6n90kfr1"; depends=[]; }; @@ -2110,6 +2115,8 @@ in with self; { HiddenMarkov = derive2 { name="HiddenMarkov"; version="1.8-13"; sha256="05dm3nl0ffsz2ziw3bz5bivyxk7r5bxs8xhky3hz660qaqzd51ki"; depends=[]; }; HierDpart = derive2 { name="HierDpart"; version="1.5.0"; sha256="10sphan6slzj6bsbzff4z7pglkjhv6xy719dm7594fmgqfjz0ici"; depends=[ade4 adegenet ape diveRsity entropart GGally ggplot2 hierfstat mmod pegas permute reshape2 tibble vegan]; }; HierO = derive2 { name="HierO"; version="0.2"; sha256="1lqj5grjly4kzxl7wb192aagz2kdvpnjdan2kcg5yxwvg1xcvwv1"; depends=[bitops RCurl rneos tcltk2 XML]; }; + HierPorfolios = derive2 { name="HierPorfolios"; version="0.1.0"; sha256="0lx10lnslal689ykp7idvngc074yhfx3mkddyrax91djnqsc8aq4"; depends=[cluster fastcluster RiskPortfolios]; }; + HierPortfolios = derive2 { name="HierPortfolios"; version="0.1.0"; sha256="13f0bkcqglf6v0b2kqgsdr9px78ai3z8km3vkqnhsnphg8kh3m4z"; depends=[cluster fastcluster RiskPortfolios]; }; HighestMedianRules = derive2 { name="HighestMedianRules"; version="1.0"; sha256="01fj3xgrb9iav5v91bq04hzv9nhnwy8l00dx6yykghwvzjwfv3ih"; depends=[RMallow]; }; HistDAWass = derive2 { name="HistDAWass"; version="1.0.6"; sha256="1h5bbxv8lgmwvlf85v8p6fyy959l36pnzjkg0d6b9kz77whlqrk1"; depends=[class FactoMineR ggplot2 ggridges histogram Rcpp RcppArmadillo]; }; HistDat = derive2 { name="HistDat"; version="0.2.0"; sha256="06zxsja8qk48q9lrr9fbk4sbpidysp31mcirxfr12l348lc9zf10"; depends=[]; }; @@ -2174,6 +2181,7 @@ in with self; { ICV = derive2 { name="ICV"; version="1.0"; sha256="1na87i39jy5d8ibldqcqz3a072ihkgcl0k629sxch9hk6v6j5lly"; depends=[]; }; ICcalib = derive2 { name="ICcalib"; version="1.0.8"; sha256="1y2w12ka0qxh9dg6dlcrnndz1xrv8gkppan64qkyk5vjrh18ajz4"; depends=[fitdistrplus icenReg ICsurv MASS msm numDeriv Rcpp RcppArmadillo survival]; }; ICcforest = derive2 { name="ICcforest"; version="0.5.1"; sha256="0z511d3drq5flxwvx7kjv3v5yanjhvs5ayvkm996jbiz3k49a12v"; depends=[icenReg ipred partykit survival]; }; + ICglm = derive2 { name="ICglm"; version="0.1.0"; sha256="1dmnz6sf311xsvyg8dh082pxgzizm701cf1ml0xg4s9kls3fd2i8"; depends=[Matrix]; }; ICsurv = derive2 { name="ICsurv"; version="1.0"; sha256="1mbndpy3x5731c9y955wscy76jrxlgv33bf6ldqp65cwyvdgxl86"; depends=[MASS matrixcalc]; }; ICtest = derive2 { name="ICtest"; version="0.3-4"; sha256="130n25xxq0iav5y2anyhjjkpvfs438qxjgrbil7yzpaaifhxrmi2"; depends=[GGally ggplot2 ICS ICSNP JADE png Rcpp RcppArmadillo survey xts zoo]; }; ICvectorfields = derive2 { name="ICvectorfields"; version="0.1.1"; sha256="15djyammyss0vqvknkd30xxd2pwmi4jzrb2x711sxhz9yx8arhqf"; depends=[fftwtools Rcpp terra]; }; @@ -2189,7 +2197,7 @@ in with self; { IDmeasurer = derive2 { name="IDmeasurer"; version="1.0.0"; sha256="0n7rziaaxm9dqixmw6rxgq9dwnwdl3dsdnpd9s59k5skdlaxnl5m"; depends=[infotheo lme4 MASS]; }; IDmining = derive2 { name="IDmining"; version="1.0.7"; sha256="1yv8lclkb1ws2n4yd3l561lqhp25vlw0f6d073yg04pidr2dpg2a"; depends=[data_table doParallel foreach]; }; IETD = derive2 { name="IETD"; version="1.0.0"; sha256="0avhyw0zcb8vj0nqfy41yq5kcd8yf9rmaawdvfcy5rqwxmi1mw9l"; depends=[doParallel dplyr foreach ggplot2 lubridate Rdpack]; }; - IFAA = derive2 { name="IFAA"; version="1.0.2"; sha256="1jn113scr85lx0sqwrz2sbay7i2i2vdbg4w18l31p2q47x963lfy"; depends=[doParallel expm foreach future HDCI mathjaxr Matrix picasso qlcMatrix rlecuyer]; }; + IFAA = derive2 { name="IFAA"; version="1.0.3"; sha256="05hib1nc2w2fjypvbqjp92j0463k79fpj0l4068x876nhnx3ms2a"; depends=[doParallel expm foreach future glmnet HDCI mathjaxr Matrix picasso qlcMatrix rlecuyer]; }; IFC = derive2 { name="IFC"; version="0.1.2"; sha256="1g5l85mjnf08dxszbybwg5z1k2dwgvhbrls8r37iq45rcb31pmyh"; depends=[DT gridExtra jpeg KernSmooth lattice latticeExtra png Rcpp RcppProgress tiff visNetwork xml2]; }; IFP = derive2 { name="IFP"; version="0.2.4"; sha256="066wz6bjqcvq22gjg2wcmglp798f87rsc8yhm13p0dic3arb5ph6"; depends=[coda haplo_stats]; }; IGG = derive2 { name="IGG"; version="1.0"; sha256="1cibb9z18xc1zx1813lk14n6p5am84hm7w0hkrsif4j3p89lrwif"; depends=[GIGrvg glmnet MASS Matrix pscl]; }; @@ -2323,6 +2331,7 @@ in with self; { IsoplotRgui = derive2 { name="IsoplotRgui"; version="4.2"; sha256="0l30bv9nzamh6aj2b5497hnn298lcim5nhp3isqnm0r1wpnpjk71"; depends=[httpuv IsoplotR jsonlite later]; }; IsoriX = derive2 { name="IsoriX"; version="0.8.2"; sha256="1yk2xlz658c1kvm3kb89qmacy5g9qnzjawi2pk5xkn7g9v214adr"; depends=[lattice latticeExtra numDeriv raster rasterVis sp spaMM viridisLite]; }; IsotopeR = derive2 { name="IsotopeR"; version="0.5.4"; sha256="0xgha5alh5y5qfz00rl73q4xlamnmrwij7kckljmy6zgrlrdnl6x"; depends=[colorspace ellipse fgui plotrix runjags]; }; + IxPopDyMod = derive2 { name="IxPopDyMod"; version="0.1.0"; sha256="12b4ffkq8788yhj2xs6fsm8dw0607ifj3yy1lylcy3z2nn2bzap7"; depends=[dplyr ggplot2 igraph magrittr readr rlang stringr tibble tidyr yaml]; }; JADE = derive2 { name="JADE"; version="2.0-3"; sha256="1fj2wawx5ac1fvlp28naqha0i17f1sb47j2qqzgccvx17ycqmmjn"; depends=[clue]; }; JASPAR = derive2 { name="JASPAR"; version="0.0.1"; sha256="0wiyn7cz45hwy9zkvacx28zdrg78q6715cg4r9xgcb39q25s0dcy"; depends=[gtools]; }; JBrowseR = derive2 { name="JBrowseR"; version="0.9.0"; sha256="0wwcz5dzjmss2rdqdfxrxbaj01f9avh7h5clzl9aqvql2g0gllbl"; depends=[cli dplyr htmltools htmlwidgets httpuv ids jsonlite magrittr mime reactR readr stringr]; }; @@ -2346,7 +2355,7 @@ in with self; { JSmediation = derive2 { name="JSmediation"; version="0.2.0"; sha256="1js9qhjfycwwipaxf64zpgwbbqyccj9zv4kipd6r82l3rx9ck8mh"; depends=[broom data_table dplyr glue knitr magrittr MASS purrr rlang tibble]; }; JWileymisc = derive2 { name="JWileymisc"; version="1.2.0"; sha256="0c140kcq0fw91r4g33xri8yxms0nk291zi708h00pszliwpg4qhq"; depends=[data_table emmeans extraoperators ggplot2 ggpubr ggthemes lavaan lme4 MASS mgcv mice multcompView psych quantreg rms robustbase VGAM]; }; JacobiEigen = derive2 { name="JacobiEigen"; version="0.3-4"; sha256="1jm63w2jn89pk725x3d9myq010mb0g5ir8vhv29mkiwgrqig6iw1"; depends=[Rcpp]; }; - JamendoR = derive2 { name="JamendoR"; version="0.1.0"; sha256="1v5i4ggc4igp83pik32fqp07ff8iv7dp93b3qhxcsy1msa4l88lx"; depends=[dplyr httr jsonlite]; }; + JamendoR = derive2 { name="JamendoR"; version="0.1.1"; sha256="0rrfbci413mqq53p5fyj8rjangdx21iyin6hzqkxyrxrv3n5mfbx"; depends=[dplyr httr jsonlite]; }; JavaGD = derive2 { name="JavaGD"; version="0.6-4"; sha256="1q48iykjzy22avmx0yy03vv9c7h87qsphg5hsrzfmx5gvck61m06"; depends=[rJava]; }; Jaya = derive2 { name="Jaya"; version="0.1.9"; sha256="0b23l7xp4waxjy1vkk09xaali5axr5900v9hkki4f75wh4gb1l53"; depends=[GA]; }; Jdmbs = derive2 { name="Jdmbs"; version="1.4"; sha256="14wprvxjyx1da1642z11wkzjiyxd5rbpaw1mzq4x6aw53dvh1kgv"; depends=[ggplot2 igraph png]; }; @@ -2360,7 +2369,7 @@ in with self; { JointNets = derive2 { name="JointNets"; version="2.0.1"; sha256="18n9dsy0w0nh7dznp6gw6g5fhhjhf5y589nb49hri0721kq1h3rb"; depends=[brainR igraph JGL lpSolve MASS misc3d oro_nifti pcaPP rgl shiny]; }; Julia = derive2 { name="Julia"; version="1.1"; sha256="0i1n150d89pkds7qyr0xycz6h07zikb2y07d5fcpaqs4446a8prg"; depends=[]; }; JuliaCall = derive2 { name="JuliaCall"; version="0.17.4"; sha256="0ys2sm8yf41zqkvwz9cavkqk8br338w93wq0h8lggfq4q0l85n21"; depends=[knitr Rcpp]; }; - JuliaConnectoR = derive2 { name="JuliaConnectoR"; version="1.0.0"; sha256="0jdflrbspvy1jx1b4gjj3d5f8lm80pf3lj76zgcqwb39m993ab7d"; depends=[]; }; + JuliaConnectoR = derive2 { name="JuliaConnectoR"; version="1.1.0"; sha256="0dqgrhnfcwx7gprvxm8kqcmmrgs5zpi23b8aiy46s9i9b59y8kmw"; depends=[]; }; JumpTest = derive2 { name="JumpTest"; version="1.1"; sha256="0y375m5477nq0ybnjmfnd8hi45d8jmdnprqvw5f70llpd7bcghh0"; depends=[MASS Rcpp RcppEigen]; }; JumpeR = derive2 { name="JumpeR"; version="0.1.4"; sha256="1c1i1m46ccjph4hnlr66pdch7ld4k5fv95fcgk8amlig8hcqiq7c"; depends=[dplyr magrittr pdftools purrr rvest stringr SwimmeR xml2]; }; JustifyAlpha = derive2 { name="JustifyAlpha"; version="0.1.1"; sha256="0bd7sn4sn95kal5q2x1q78fsk1mhakr5fax3z6ny2yda2h266af9"; depends=[BayesFactor ggplot2 pwr qpdf shiny shinydashboard stringr Superpower]; }; @@ -2408,7 +2417,7 @@ in with self; { KnapsackSampling = derive2 { name="KnapsackSampling"; version="0.1.0"; sha256="17yzmd11k1n5iy54vbcvpzvkm8ypbl6n1kfi931wwrrcq9y7hg22"; depends=[lpSolve]; }; KneeArrower = derive2 { name="KneeArrower"; version="1.0.0"; sha256="1blmim4l7375psa9c3wbpksywj5nfbawly4001n6311wcv4dybl5"; depends=[signal]; }; KnockoffScreen = derive2 { name="KnockoffScreen"; version="0.2.0"; sha256="1gc47ahvw9sdjbaxg3xl8r6pw9mkn85wdy6gwlksscnl49krrikg"; depends=[CompQuadForm data_table Matrix seqminer SPAtest]; }; - Knoema = derive2 { name="Knoema"; version="0.1.18"; sha256="0knq1nzpcampx2xc0sx190lkdvr0ipyn0rpyxxjfr16nb4cy5djm"; depends=[base64enc digest httr jsonlite lubridate xts zoo]; }; + Knoema = derive2 { name="Knoema"; version="0.1.19"; sha256="16izh1viaqxvhgfxy2g6b9hhvm1n6nbjsj2xd45qwdibl3ly8d0f"; depends=[base64enc digest httr jsonlite lubridate xts zoo]; }; KnowBR = derive2 { name="KnowBR"; version="2.0"; sha256="0i934gff8ldg0lm5cfcf3ip7abnparaaviq8avs7cbnacs6nw8i1"; depends=[fossil mgcv plotrix sp vegan]; }; KnowGRRF = derive2 { name="KnowGRRF"; version="1.0"; sha256="0nk0baibd184rsg23jx1wg4c2fcaqf8ww7822xrs3w5ym6vwd0rs"; depends=[MASS PRROC randomForest RRF]; }; KoulMde = derive2 { name="KoulMde"; version="3.2.1"; sha256="0yx04my2vwjpi4l35h1i5xwqckca8b72divww39y1frcvia33g08"; depends=[expm Rcpp RcppArmadillo]; }; @@ -2893,7 +2902,7 @@ in with self; { MatManlyMix = derive2 { name="MatManlyMix"; version="1.1.1"; sha256="1d2vd5b9lirdybjclxh0nn4mghq64qjj4l8vnj95cni5pfa18a2c"; depends=[]; }; MatSkew = derive2 { name="MatSkew"; version="0.1.5"; sha256="019v2b1r0bvw84xs50smjb3jdz7gd2adz5d84xd8zq43lnml96d1"; depends=[]; }; MatTransMix = derive2 { name="MatTransMix"; version="0.1.15"; sha256="1s2wmhiqn024x9l217xak3wp3dbd3mfrih70xc5mc1b4555f2fbm"; depends=[mvtnorm]; }; - MatchIt = derive2 { name="MatchIt"; version="4.3.0"; sha256="0ijlv2gggxc6b9k0zcbni1dass1n4b312w66rgafn6bw3aw7m2fa"; depends=[backports Rcpp RcppProgress]; }; + MatchIt = derive2 { name="MatchIt"; version="4.3.1"; sha256="1pzfaab8ny4gb5gnj5fd6fgqi826i6m2krjafsmdc91265904ks0"; depends=[backports Rcpp RcppProgress]; }; MatchLinReg = derive2 { name="MatchLinReg"; version="0.7.3"; sha256="1si0zn6vlgyj08841hfjx8an96a8ipnawl4zbalabmpy7r5bfwx8"; depends=[Hmisc Matching]; }; MatchThem = derive2 { name="MatchThem"; version="1.0.1"; sha256="1g3vzbxrbmgmxlnn6i2i1wdk949i547ywgxcw05na71kc1nvwvfd"; depends=[MatchIt mice rlang survey WeightIt]; }; Matching = derive2 { name="Matching"; version="4.9-11"; sha256="123np8gwjrbmkl65kj7qfa52i9msnkjyhvj4pwwqh5mkca2clw8w"; depends=[MASS]; }; @@ -2909,7 +2918,8 @@ in with self; { MaxPro = derive2 { name="MaxPro"; version="4.1-2"; sha256="19a2wp93kx1wkbzd5bvljbm1rr96gr14w4fb0ppbgr2y2a4g8i1v"; depends=[nloptr]; }; MaxSkew = derive2 { name="MaxSkew"; version="1.1"; sha256="0x5x0jpvhp189jnmgh6d1h3ya0dicj5qfcrgr2fhp1v8jjhl125m"; depends=[]; }; MaxentVariableSelection = derive2 { name="MaxentVariableSelection"; version="1.0-3"; sha256="1cmxfdkm5k85b4ivlfy5521hkfj0gq2pb1qlxxklh0fprw87kp9c"; depends=[ggplot2 raster]; }; - MazamaCoreUtils = derive2 { name="MazamaCoreUtils"; version="0.4.9"; sha256="0438gdgx940455qh4p8x0l43gla6vnyp1ylp47c4rdx8gz890g6q"; depends=[devtools digest dplyr futile_logger lubridate magrittr purrr rlang rvest stringr tibble xml2]; }; + MaximinInfer = derive2 { name="MaximinInfer"; version="1.0.0"; sha256="1m6xb4blpahgm7b4h96rdg2qakgn893sfjk45flxnvn8gipbwlrh"; depends=[CVXR glmnet intervals MASS SIHR]; }; + MazamaCoreUtils = derive2 { name="MazamaCoreUtils"; version="0.4.10"; sha256="0085miwwda387k33hf6l8p3f0pp8714nq0whzmf89l3yn932ai33"; depends=[devtools digest dplyr futile_logger lubridate magrittr purrr rlang rvest stringr tibble xml2]; }; MazamaLocationUtils = derive2 { name="MazamaLocationUtils"; version="0.2.0"; sha256="00gzwmz0jvkf2khwjha4n6xylwl2iqbz7a4wm06mhqj179sf9v6q"; depends=[digest dplyr geodist httr jsonlite leaflet lubridate magrittr MazamaCoreUtils MazamaSpatialUtils readr rlang sp stringr]; }; MazamaRollUtils = derive2 { name="MazamaRollUtils"; version="0.1.3"; sha256="1433xy64n3wpxg9d0jlwdfp8hlvmq0ndg3fv6kfxq3pasm600jgc"; depends=[Rcpp]; }; MazamaSpatialPlots = derive2 { name="MazamaSpatialPlots"; version="0.1.2"; sha256="1gkxq6lnvdv24nvc34fmxz4qilzljxcls1lq29a5ag67dffz7kcj"; depends=[dplyr magrittr MazamaCoreUtils MazamaSpatialUtils rlang sf sp tmap]; }; @@ -2986,15 +2996,17 @@ in with self; { MixRF = derive2 { name="MixRF"; version="1.0"; sha256="1av1wx7wmfc3z8a4bc6g3i3b807nc28n3s2rs3yh0rcwq1pfl0ir"; depends=[doParallel foreach lme4 randomForest]; }; MixSAL = derive2 { name="MixSAL"; version="1.0"; sha256="15dymyzfs3bwskaf6xndj291g6nhw7k1q93y1cba55a6fdjh5qz9"; depends=[MASS]; }; MixSIAR = derive2 { name="MixSIAR"; version="3.1.12"; sha256="07wiv7x2c9mhqk37zndxvdb76m9shizc48qz2bp2f4g5z9hciid7"; depends=[bayesplot coda ggmcmc ggplot2 lattice loo MASS MCMCpack R2jags RColorBrewer reshape reshape2 splancs]; }; - MixSim = derive2 { name="MixSim"; version="1.1-4"; sha256="0nwgp2pmyza3l77y6div9fkdw6w3m8dbl28crv9yhdc9rpw1xlfp"; depends=[MASS]; }; + MixSim = derive2 { name="MixSim"; version="1.1-5"; sha256="16l27y8wgy44zpavl3as0qdm1csjrmh2iy7idd2j6l8cba8z2l0i"; depends=[MASS]; }; MixTwice = derive2 { name="MixTwice"; version="1.1"; sha256="1vzy31aaxyfr28xsk9358laqg429lnrkxdmm63maz15wcbxha9zq"; depends=[alabama ashr fdrtool]; }; MixedIndTests = derive2 { name="MixedIndTests"; version="0.1.5"; sha256="1vlkpm1qx3mh3c08d0hwyzdap8s8kpdiiik49yphgmqgb8xg7i9n"; depends=[doParallel foreach ggplot2 survey]; }; MixedPoisson = derive2 { name="MixedPoisson"; version="2.0"; sha256="0g5mpzj0wda6g46q3cg5mm3x4dvpz9gdclzn2m17l62lzny2i10p"; depends=[gaussquad MASS Rmpfr]; }; - MixedPsy = derive2 { name="MixedPsy"; version="1.0.0"; sha256="19cgw82jdkcpkca90bab1k5gcb2prlxm634n4m7yx0p0mj736fha"; depends=[beepr boot brglm lme4 Matrix mnormt]; }; + MixedPsy = derive2 { name="MixedPsy"; version="1.1.0"; sha256="1iz3cl19xlznzbqxvichbjhyhams4v9611p9094r6q5fpmf71p88"; depends=[beepr boot brglm ggplot2 lme4 Matrix mnormt]; }; MixedTS = derive2 { name="MixedTS"; version="1.0.4"; sha256="0gwcg115idbcm5llgzqsygvqgshq8dywawxkaddsmw4sbbhj4555"; depends=[MASS]; }; + MixfMRI = derive2 { name="MixfMRI"; version="0.1-2"; sha256="1ngqn2chjii94f7413ydbzmws083mp0hc5ys3lwi2mgqqmpi3pah"; depends=[EMCluster fftw MASS Matrix MixSim RColorBrewer]; }; MixtureInf = derive2 { name="MixtureInf"; version="1.1"; sha256="12qcflmrpzh4w5b40xq5qicks6p0cwqpf5k84pwabkjb168afddv"; depends=[quadprog]; }; MixtureMissing = derive2 { name="MixtureMissing"; version="1.0.0"; sha256="1sqpv8ysn0y28x8pbz75lqc066sdbpmfmxzb1q39aa83siysc06q"; depends=[cluster ContaminatedMixt GGally ggplot2 mnormt mvtnorm rootSolve]; }; MixtureRegLTIC = derive2 { name="MixtureRegLTIC"; version="1.0.0"; sha256="052gyk4gqv49fa2rxbxnib29f1vjxiw4q8llkfhsv8kw5pw38699"; depends=[]; }; + MoBPS = derive2 { name="MoBPS"; version="1.6.64"; sha256="12czwx362pn0crj047rqb9ambl1fw73k474i7vcxhz53kbw21wj0"; depends=[]; }; MoEClust = derive2 { name="MoEClust"; version="1.4.1"; sha256="0k9mrwd2khz5mi4bg7dk6m7xh1jqkkf1y9v3qqmhbx0y88r4fmhs"; depends=[lattice matrixStats mclust mvnfast nnet vcd]; }; MoLE = derive2 { name="MoLE"; version="1.0.1"; sha256="0bq19vwqjn5hl4mw5imkydbp39gal992vnh2dwrq8bb8cmj3qh91"; depends=[]; }; MoMPCA = derive2 { name="MoMPCA"; version="1.0.1"; sha256="1snixlq35xbzf005d877i493sf1wm48jqlq9515yl1s6lxmav1n7"; depends=[doParallel dplyr foreach magrittr Matrix slam tm topicmodels]; }; @@ -3067,7 +3079,7 @@ in with self; { MultipleBubbles = derive2 { name="MultipleBubbles"; version="0.2.0"; sha256="047a1pql3jf500gwlap6ws5z7mx0sqmdq6jbql24nl5iypi9jqpf"; depends=[foreach MASS]; }; MultiplierDEA = derive2 { name="MultiplierDEA"; version="0.1.18"; sha256="1d7cqa44yayyhwkl5wkp68b7vxakfnlwkprs811z8c2fmfm8vk5r"; depends=[lpSolveAPI]; }; MultisiteMediation = derive2 { name="MultisiteMediation"; version="0.0.4"; sha256="0kkw6zxw29qmgd9nlgqjlyh99icxzkkqnpzzanxx8pn7m2ww0wkf"; depends=[ggplot2 lme4 MASS psych statmod]; }; - MultivariateAnalysis = derive2 { name="MultivariateAnalysis"; version="0.4.3"; sha256="0pf83hmbpsa64xbhagbpyllwndhhla1m35cq6kf4i0788kdpz4f5"; depends=[ape biotools candisc corrplot crayon PCAmixdata]; }; + MultivariateAnalysis = derive2 { name="MultivariateAnalysis"; version="0.4.4"; sha256="0vpk7iplmb0cyrqal90m1y4ym8wng2b8k9ydh26xaga4r974qd2p"; depends=[ape biotools candisc corrplot crayon PCAmixdata]; }; MultivariateRandomForest = derive2 { name="MultivariateRandomForest"; version="1.1.5"; sha256="0mww4x1hqraiyvmw2f9s6h180kplmj36hb7zfg7xlkmgdf4apk8d"; depends=[bootstrap Rcpp]; }; MultiwayRegression = derive2 { name="MultiwayRegression"; version="1.2"; sha256="1w0yd3nwrqpk5nhnrcrd06fbdhg4kizx2p8mpspqnw8qcn970pfl"; depends=[MASS]; }; MvBinary = derive2 { name="MvBinary"; version="1.1"; sha256="1lrrxvphxv4gmlazx67q4bck9373nqylqgkwcjzwb52291a3zyiv"; depends=[mgcv]; }; @@ -3277,7 +3289,7 @@ in with self; { OasisR = derive2 { name="OasisR"; version="3.0.2"; sha256="1388ld2nws3ppnkavg8s59q3inqf365c5cf9qvzbj6icmwqs9rdd"; depends=[measurements outliers rgdal rgeos seg spdep]; }; Observation = derive2 { name="Observation"; version="0.2.0"; sha256="0v81manzcvv8x9hbf75c8klslzdabha53rasyba91vvcbrshhq6j"; depends=[AGread svDialogs]; }; OceanView = derive2 { name="OceanView"; version="1.0.6"; sha256="1ww6xhpvs3y0zx7pgj8083a8v4l4cm0b0b497b4gsjbcbnbnal9c"; depends=[plot3D plot3Drgl rgl shape]; }; - OddsPlotty = derive2 { name="OddsPlotty"; version="1.0.1"; sha256="140svvixywiky565vawmzi43xvqq7g0q3d6gi90qk95xxin1d9il"; depends=[caret e1071 ggplot2 ggthemes magrittr mlbench tibble]; }; + OddsPlotty = derive2 { name="OddsPlotty"; version="1.0.2"; sha256="0adgbrni7yrarybh0djmq68hifwqzn2rn9mfqgwqma1d7mg3ai93"; depends=[caret e1071 ggplot2 ggthemes magrittr mlbench rmarkdown tibble tidymodels]; }; OenoKPM = derive2 { name="OenoKPM"; version="0.1.2"; sha256="1rw740zw38k3q9kl89rvn740d5v4k1hhmlz4bp9ynhnq34g9p9rq"; depends=[extrafont ggplot2 ggtext minpack_lm openxlsx]; }; Ohit = derive2 { name="Ohit"; version="1.0.0"; sha256="132d4drc2phw9ppxnczb1ycdg3dv085k8p6bcaj3v866j0hfxjgb"; depends=[]; }; OjaNP = derive2 { name="OjaNP"; version="1.0-0"; sha256="0xddspnnwlcxh2i66ilh6i920k53y7fv6m1hgj9h28qg2wy0vyah"; depends=[ICS ICSNP Rcpp]; }; @@ -3293,6 +3305,7 @@ in with self; { OncoBayes2 = derive2 { name="OncoBayes2"; version="0.8-2"; sha256="0hhj1sdn0yzcib0dh5prc93ill2a3mvh5a8jjsvigk3j5bvhbfwi"; depends=[abind assertthat bayesplot BH checkmate dplyr Formula ggplot2 Rcpp RcppEigen RcppParallel rlang rstan rstantools scales StanHeaders tibble tidyr tidyselect]; }; Oncotree = derive2 { name="Oncotree"; version="0.3.3"; sha256="147rc9ci66lxbb91ys2ig40sgmldi15p604yysrd4ccbxpbk2zwf"; depends=[boot]; }; OneR = derive2 { name="OneR"; version="2.2"; sha256="1k7rzhcwq5b2yi4zfsc1r0yb6w65gxj9835d2a1dclallja3zav2"; depends=[]; }; + OneSampleMR = derive2 { name="OneSampleMR"; version="0.1.0"; sha256="0gxsfx5www0ndmxaymva2krsyricf4b6nyvjz1hlyjckl3drmqbw"; depends=[Formula gmm ivreg lmtest msm]; }; OneStep = derive2 { name="OneStep"; version="0.9.2"; sha256="06gnw364p74nnb9rx3ghyfavd02xmnvzy94hzdwgxqs86z30b2gz"; depends=[fitdistrplus numDeriv]; }; OneTwoSamples = derive2 { name="OneTwoSamples"; version="1.0-3"; sha256="0019rc2f4jmbm6sinkvalvjqwi822x78aiin88kg8qbbb5ml8l89"; depends=[]; }; OpVaR = derive2 { name="OpVaR"; version="1.2"; sha256="1923p60yzh8fycwl1fwy01r7ml5yx0kx01ckhgii7slm4cachf5f"; depends=[actuar evmix MASS pracma ReIns tea truncnorm VineCopula]; }; @@ -3426,7 +3439,7 @@ in with self; { PLordprob = derive2 { name="PLordprob"; version="1.1"; sha256="1g23h3121g9csr85falm6vgzbva42wz3skhfr2rxmvlc3ca4afyp"; depends=[mnormt]; }; PMA = derive2 { name="PMA"; version="1.2.1"; sha256="1rhiylm3jfarnqdkv7nwg536sgsa30ic80dk9byks9w0wf4mn59s"; depends=[]; }; PMCMR = derive2 { name="PMCMR"; version="4.4"; sha256="05n13pp5yff6pzk4ry07crddfaj3jlglrd1vkcnacyd8jpaxkd77"; depends=[]; }; - PMCMRplus = derive2 { name="PMCMRplus"; version="1.9.2"; sha256="084lcard82cd9s0d89pr7q0wvmc5432yfpn9gjmrjdnani4j5wzh"; depends=[BWStest gmp kSamples MASS multcompView mvtnorm Rmpfr SuppDists]; }; + PMCMRplus = derive2 { name="PMCMRplus"; version="1.9.3"; sha256="00sgk4c7vpmbfifrsbqd5gh7hwdpm8kymlpnnrdzlhvkymhbmfkn"; depends=[BWStest gmp kSamples MASS multcompView mvtnorm Rmpfr SuppDists]; }; PMwR = derive2 { name="PMwR"; version="0.17-0"; sha256="0p5gsagpk5w8nmpg49y74bj0gzk1qdpw1q9679p9qpwmc7xl3k6n"; depends=[datetimeutils fastmatch NMOF orgutils textutils zoo]; }; PNADcIBGE = derive2 { name="PNADcIBGE"; version="0.6.5"; sha256="0lmznymj95vfyn0c4ga2z0mwfmrjvyr7255silq69w2xq7j8hfrl"; depends=[dplyr httr magrittr projmgr RCurl readr readxl survey tibble timeDate]; }; PNSIBGE = derive2 { name="PNSIBGE"; version="0.1.5"; sha256="0hd2lqf26xp11wj06wpqk1v5jr902dyqhv40c6a3x8danrwh5bfa"; depends=[dplyr httr magrittr projmgr RCurl readr readxl survey tibble timeDate]; }; @@ -3656,7 +3669,7 @@ in with self; { PriorCD = derive2 { name="PriorCD"; version="0.1.0"; sha256="1mb50w2i8sfxjzqd5xnfysn3jnzkkyv6l8algxnp0xpyhcq41pfs"; depends=[dplyr igraph ROCR visNetwork]; }; PriorGen = derive2 { name="PriorGen"; version="1.1.2"; sha256="0qvdqqdy7wdwwcq95mkgfyf7xf6xlpwdfs3gq299yyv2ba57flnm"; depends=[rootSolve]; }; PrivateLR = derive2 { name="PrivateLR"; version="1.2-22"; sha256="0d142fa3wk7yadvs8jszajs6hq9m03p0j6h5r4pbw7j0d1l72hgc"; depends=[]; }; - ProAE = derive2 { name="ProAE"; version="0.1.2"; sha256="1z31pln5v4xl4s3ksvywbdmrvz4d0gq6qpwhd98xgfc6a9p00fyf"; depends=[DescTools dplyr ExactCIdiff ggnewscale ggplot2 ggtext Hmisc magrittr]; }; + ProAE = derive2 { name="ProAE"; version="0.2.8"; sha256="1dx5ddkvd8a8z53y1bvx7w7iljyzg15g1gcwqza0skc14s62p4zk"; depends=[DescTools dplyr ExactCIdiff ggnewscale ggplot2 ggtext gridExtra Hmisc magrittr]; }; ProDenICA = derive2 { name="ProDenICA"; version="1.0"; sha256="04gnsnd0xzw3bfbssdp06bar0lk305ry2c97pmwxgiz3ay88dfsj"; depends=[gam]; }; ProFit = derive2 { name="ProFit"; version="1.3.3"; sha256="0jrw0v7dg5mf4zxg7pqybh9qzsiqb3nnz8g5qlc4iz73mhr9gm2b"; depends=[celestial checkmate cubature FITSio LaplacesDemon magicaxis RColorBrewer]; }; ProFound = derive2 { name="ProFound"; version="1.14.1"; sha256="1p2mdy0z5p7as1x6vc572wjcl6f0acwgpvb39rmk2273kb1ldwz5"; depends=[celestial data_table FITSio foreach magicaxis RColorBrewer Rcpp]; }; @@ -3808,7 +3821,6 @@ in with self; { RAQSAPI = derive2 { name="RAQSAPI"; version="2.0.1"; sha256="0dz81fkxjk85n9c9kabibyr0c7bg6widamnnvld135q3w1nridfc"; depends=[dplyr glue gtools httr jsonlite lifecycle lubridate magrittr purrr rlang stringr tibble]; }; RATest = derive2 { name="RATest"; version="0.1.9"; sha256="02673wbss90c192rxbzxfsbnirl63k7d8fq989chmjc5z2xjzajj"; depends=[ggplot2 gridExtra quantreg]; }; RAdwords = derive2 { name="RAdwords"; version="0.1.18"; sha256="1c3m2j2cf1s51p783rdng5ns913bv7rbjc1vpmrmsxg2kf5f6qyq"; depends=[RCurl rjson]; }; - RAhrefs = derive2 { name="RAhrefs"; version="0.1.4"; sha256="0yd7jbv2x711dnhbvwjjg7qhg8h8bh5564amsv9bkqw661i042m3"; depends=[assertthat httr jsonlite testthat]; }; RApiDatetime = derive2 { name="RApiDatetime"; version="0.0.6"; sha256="15j6vb6rm4ykwjachqyyfvjshiilyjqnpj8x6qc93savk04rf279"; depends=[]; }; RApiSerialize = derive2 { name="RApiSerialize"; version="0.1.0"; sha256="0gm2j8kh40imhncwwx1sx9kmraaxcxycvgwls53lcyy2ap344k9j"; depends=[]; }; RAppArmor = derive2 { name="RAppArmor"; version="3.2.2"; sha256="0l0f4k666nh00db94sjxz60anr4l9vm0259pcc2a4whk2pmjcq5n"; depends=[unix]; }; @@ -3908,6 +3920,7 @@ in with self; { RGoogleFit = derive2 { name="RGoogleFit"; version="0.4.0"; sha256="0k1vvl4l6pq37llpbq996rbghdfld7mz7bhzbpw393fmrkd45vyi"; depends=[bit64 httr jsonlite RCurl]; }; RGraphics = derive2 { name="RGraphics"; version="3.0-2"; sha256="02gp2lqc5qzid81d28cqb7x88zr0ivxppy55a9q649whcd027071"; depends=[ggplot2 gridBase gridGraphics gridSVG grImport grImport2 lattice]; }; RGreenplum = derive2 { name="RGreenplum"; version="0.1.2"; sha256="1mc0zmmnb9306j2cjn1j71bp35ri8p35rw6rlmrqyxgpvlw09r3d"; depends=[DBI RPostgres]; }; + RGremlinsConjoint = derive2 { name="RGremlinsConjoint"; version="0.9.0"; sha256="1ppyvb3l13xz0fihskckmm53ppgfb577n0359kc1bip4bpgky3li"; depends=[bayesm]; }; RGtk2 = derive2 { name="RGtk2"; version="2.20.36.2"; sha256="1m3a3h3yxmr2qpcdyxrwxrdplvhb4rprvd8cnmfwk3zkazd69f9n"; depends=[]; }; RH2 = derive2 { name="RH2"; version="0.2.4"; sha256="14590l3a2znd56nrq1zfbfv7fgii4672qy1xfwiynrh3mjad217k"; depends=[chron rJava RJDBC]; }; RHMS = derive2 { name="RHMS"; version="1.7"; sha256="1fld5y39a4xq40wh23944ngcrkqk2pw8w9raxir9wn2z2nysr7zg"; depends=[GGally ggplot2 Hmisc network pso]; }; @@ -3932,7 +3945,7 @@ in with self; { RInside = derive2 { name="RInside"; version="0.2.16"; sha256="03iabanmj5xkgq7r1n1rkmzjf2zz484637nmd1qg61ga53hsvr3s"; depends=[Rcpp]; }; RItools = derive2 { name="RItools"; version="0.1-17"; sha256="1shcvkgsyjk9jmpf7icj1zjlvmqa11scmymc8cycnffax604frbm"; depends=[abind SparseM survival svd xtable]; }; RJDBC = derive2 { name="RJDBC"; version="0.2-8"; sha256="1qfq1vjlxhg3hmb1169zkss7kng74jhjninqkfr3cca8x1fq9593"; depends=[DBI rJava]; }; - RJDemetra = derive2 { name="RJDemetra"; version="0.1.7"; sha256="0qyy8sssj15aq6kk0dmbac8an7nnnlihs28lkx5016gg84l0acs5"; depends=[rJava]; }; + RJDemetra = derive2 { name="RJDemetra"; version="0.1.9"; sha256="0av3yqibyipxvch5p2zv9r82pvpvl406nxd5pkm4pnbjndw09j3s"; depends=[rJava]; }; RJSDMX = derive2 { name="RJSDMX"; version="2.3-3"; sha256="02lbg82g4abng5vcn2g8ghvmg69q35my8smnbvd09yvha8hb49ps"; depends=[rJava zoo]; }; RJSONIO = derive2 { name="RJSONIO"; version="1.3-1.6"; sha256="17x0ayk7daprbc8w2hvb2jl9mfnw4dic9yc3sr5adcjqfzmcklc2"; depends=[]; }; RJSplot = derive2 { name="RJSplot"; version="2.5"; sha256="0p2zqbq29pfjl703wqqjzgmif7yfzz7l8rzarjf5axkdy7w7fcyl"; depends=[]; }; @@ -3952,7 +3965,7 @@ in with self; { RLeafAngle = derive2 { name="RLeafAngle"; version="1.0"; sha256="1anks22hn6qpac556p99kilkhc80h572dvcyz3wj1nqffdrhgrh3"; depends=[]; }; RLogicalOps = derive2 { name="RLogicalOps"; version="0.1"; sha256="1qyn80x3x3bb5wgzyzw6pxs8a6q26yq1fkmkz7f5wywsnrj8hzfj"; depends=[rstackdeque stringr]; }; RLumCarlo = derive2 { name="RLumCarlo"; version="0.1.7"; sha256="1r70d68y3l43pb47wxhhbgbirnnx0hyaklvphlqrhnlkxp04r4xk"; depends=[abind doParallel foreach khroma magrittr Rcpp RcppArmadillo scatterplot3d]; }; - RLumModel = derive2 { name="RLumModel"; version="0.2.8"; sha256="129qp5y7qmqwx820fknzwdylkhc9fn17divn0572afcaj5lv9786"; depends=[deSolve Luminescence Rcpp RcppArmadillo]; }; + RLumModel = derive2 { name="RLumModel"; version="0.2.9"; sha256="15cllm4iywa74bmxlvasy7xkr86c4ghw2ii0656q0413dgasygjr"; depends=[deSolve Luminescence Rcpp RcppArmadillo]; }; RLumShiny = derive2 { name="RLumShiny"; version="0.2.2"; sha256="0rwl555564ccw4pdzya88s3h3q30iq5dmi77141ji8ir91x4rz3g"; depends=[data_table DT googleVis knitr Luminescence RCarb readxl rhandsontable rmarkdown shiny shinydashboard shinyjs]; }; RM_weights = derive2 { name="RM.weights"; version="2.0"; sha256="1by1z7gwwx0jjhhvsjkr7f6m7n0x43bj080ah5275cja7xqr5nm6"; depends=[Hmisc psychotools]; }; RM2 = derive2 { name="RM2"; version="0.0"; sha256="1v57nhwg8jrpv4zi22fhrphw0p0haynq13pg9k992sb0c72dx70a"; depends=[msm]; }; @@ -4026,7 +4039,7 @@ in with self; { ROI_plugin_osqp = derive2 { name="ROI.plugin.osqp"; version="1.0-0"; sha256="09g947wx2qdimidayyn96gppiwrw28riff2wzsvvl8xvqi8nrh63"; depends=[Matrix osqp ROI slam]; }; ROI_plugin_qpoases = derive2 { name="ROI.plugin.qpoases"; version="1.0-0"; sha256="0gha9zzjkkdr2lcalhyghh9sb5260rsaj88k37dk3qncdpk6gnw2"; depends=[checkmate Rcpp ROI slam]; }; ROI_plugin_quadprog = derive2 { name="ROI.plugin.quadprog"; version="1.0-0"; sha256="08zgz4nnv7n455lghvzif54m4g3fzzj4czh93p6swb0kghb893wr"; depends=[quadprog ROI slam]; }; - ROI_plugin_scs = derive2 { name="ROI.plugin.scs"; version="1.0-0"; sha256="07by36pi82893xi3c0i3amaw7wx814h8pjx44cp4icv3wyxdpqpr"; depends=[ROI scs slam]; }; + ROI_plugin_scs = derive2 { name="ROI.plugin.scs"; version="1.1-1"; sha256="1s4qbdl7lwk0s9chymwxw8szbadbi268kr5vw9bx4ybj0iphjb6k"; depends=[ROI scs slam]; }; ROI_plugin_symphony = derive2 { name="ROI.plugin.symphony"; version="1.0-0"; sha256="0wai3yfglx81f97v139bffxf4cziqlqki4vnq76bw4p22g7hdzl8"; depends=[ROI Rsymphony slam]; }; ROMDB = derive2 { name="ROMDB"; version="0.1.0"; sha256="14jijcqd2zmps8sacx5nwfclj5yvqf4nx72y8pfvr0nswqqb895i"; depends=[dplyr httr magick purrr RODBC stringr]; }; ROOPSD = derive2 { name="ROOPSD"; version="0.2.5"; sha256="11cm9bnp0355vfwwlb4x4x3vh2z8k28fjms8ah6pah59x0i536i8"; depends=[Lmoments R6]; }; @@ -4041,8 +4054,8 @@ in with self; { ROptEstOld = derive2 { name="ROptEstOld"; version="1.2.0"; sha256="08njyxb8bnjb9nas3szqvqkfv83lc0187b7biis2nl2rgq6rljzy"; depends=[distr distrEx evd RandVar]; }; ROptRegTS = derive2 { name="ROptRegTS"; version="1.2.0"; sha256="1wy54kjrpfvj2k9ndmq27zzgx6aygh85f7c83g7gn8d5b2y91qy4"; depends=[distr distrEx RandVar ROptEstOld]; }; ROptSpace = derive2 { name="ROptSpace"; version="0.2.3"; sha256="18fz285hr4fdkkbs4b13gmwz0sqbgk6di6m3c6ic0wvs35mpmcfz"; depends=[Rcpp RcppArmadillo Rdpack]; }; - ROracle = derive2 { name="ROracle"; version="1.3-1"; sha256="07zqzwaq5iqkjcmns2ahl1l71xjlznialb3dbyl4lwsh3p3fhf2n"; depends=[DBI]; }; - RPANDA = derive2 { name="RPANDA"; version="1.9"; sha256="16qhv4zwwrjrjxr06pimjprb74gbzpq2hkii27abln6a62m3z4kb"; depends=[ape bipartite cluster coda corpcor deSolve fields fpc geiger glassoFast igraph Matrix mvMORPH mvtnorm phytools picante pracma pspline pvclust raster Rmpfr TESS]; }; + ROracle = derive2 { name="ROracle"; version="1.3-1.1"; sha256="1k5w6fi1f83mhlc8hx6y305llcwxl22h6lpkib1yvm4557k1c7zz"; depends=[DBI]; }; + RPANDA = derive2 { name="RPANDA"; version="2.0"; sha256="1xszarf0857msiq27ghq8vz0sr8lziajwssm07k46x7p3jk4rk3b"; depends=[ape bipartite cluster coda deSolve fields fpc glassoFast igraph Matrix mvMORPH phytools picante pspline pvclust raster Rmpfr TESS]; }; RPCLR = derive2 { name="RPCLR"; version="1.0"; sha256="03kpyszsjb656lfwx2yszv0a9ygxs1x1dla6mpkhcnqw00684fab"; depends=[MASS survival]; }; RPEGLMEN = derive2 { name="RPEGLMEN"; version="1.1.1"; sha256="1hm68f6ipiy2518viz182psqgh5krq9aihid0njg4817cyssg95z"; depends=[Rcpp RcppEigen RPEIF]; }; RPEIF = derive2 { name="RPEIF"; version="1.2.4"; sha256="002f8753gfqx1ddcb60hz7xy6l19zvp3d3arackkqjh26zcw1paj"; depends=[RobStatTM xts zoo]; }; @@ -4287,7 +4300,7 @@ in with self; { RcppCensSpatial = derive2 { name="RcppCensSpatial"; version="0.1.0"; sha256="0ckyl88b81l58dkk0s40mcanjqaibi106q6jsrak79as93g1dbh1"; depends=[ggplot2 gridExtra MomTrunc mvtnorm Rcpp RcppArmadillo RcppProgress Rdpack roptim tlrmvnmvt]; }; RcppClassic = derive2 { name="RcppClassic"; version="0.9.12"; sha256="0v9v34i1c4dkplavdl14kz1k2rnk4hsaiyv6rkc9403z9isvzzr0"; depends=[Rcpp]; }; RcppClassicExamples = derive2 { name="RcppClassicExamples"; version="0.1.2"; sha256="0dr2104miy7psr73nicfs84652ai0d5liw6wxcwyrx7fmys3p638"; depends=[Rcpp RcppClassic]; }; - RcppClock = derive2 { name="RcppClock"; version="1.0"; sha256="05vkbc9bnp5z8nz0iv5cl5rd0h88a3zzz63dnbnhgiq1rqx4pmy1"; depends=[ggplot2 Rcpp]; }; + RcppClock = derive2 { name="RcppClock"; version="1.1"; sha256="0h59s6f9ib6d2n1fi94bcbqw0gcpbd5zvnc3pk4kb9lm7ih4dw7b"; depends=[ggplot2 Rcpp]; }; RcppDE = derive2 { name="RcppDE"; version="0.1.6"; sha256="1i9jj595nqpb16y22z2b8fcf0gq1fg0pbiisbd837p1cyw4nff69"; depends=[Rcpp RcppArmadillo]; }; RcppDL = derive2 { name="RcppDL"; version="0.0.5"; sha256="1gii00bna6k9byaax7gsx42dv1jjnkrp4clbmdq59ybq3vkvw8z2"; depends=[Rcpp]; }; RcppDate = derive2 { name="RcppDate"; version="0.0.3"; sha256="1nwb4fdjxwn0c1ckj1fpsxl2hxk5z3sk3y5giwgdag6nfv7yfplw"; depends=[]; }; @@ -4456,7 +4469,7 @@ in with self; { Rmst = derive2 { name="Rmst"; version="0.0.3"; sha256="1fykpii17k460qlsjhhh5vag02lhkyk5l3zjmg8hifqp0cjhz2fl"; depends=[ggplot2 Rata reshape2 Rirt]; }; RnavGraphImageData = derive2 { name="RnavGraphImageData"; version="0.0.4"; sha256="1k1gnkghap878fck0bbz9mm0fr4cli6lh1d11r0cf47fvl6cc4gr"; depends=[]; }; Rnightly = derive2 { name="Rnightly"; version="0.1.0"; sha256="08sb4ic7my8b6xcjn9vim8wp4z3kvk0gyp604dg1az7czc7ics5r"; depends=[glue htmltools]; }; - Rnmr1D = derive2 { name="Rnmr1D"; version="1.2.5"; sha256="0z97pmkksma225s948r0myd4638cy8vl1x2244w1r6n0cybymnd9"; depends=[base64enc doParallel foreach ggplot2 igraph impute MASS MassSpecWavelet Matrix plotly plyr ptw Rcpp signal speaq XML]; }; + Rnmr1D = derive2 { name="Rnmr1D"; version="1.3.0"; sha256="1x06a2bsfpx27pgpxj0dih72pav26g3j0lmh0fa8gjw45jc64f4a"; depends=[base64enc doParallel foreach ggplot2 igraph impute MASS MassSpecWavelet Matrix minqa plotly plyr ptw Rcpp signal speaq XML]; }; Rnumerai = derive2 { name="Rnumerai"; version="2.1.4"; sha256="0zxpim1wgymdhdyl7dcvc16iic57wmn8qvxicps9kgr8wxgic0p8"; depends=[arrow data_table dplyr ggplot2 httr lubridate purrr tidyr]; }; Rnvd3 = derive2 { name="Rnvd3"; version="1.0.0"; sha256="13l5vcbcm88jfsc11ijkvr1s8qk8fflclazs4kl1k2wzpnlr6z6a"; depends=[data_table htmltools htmlwidgets jsonlite lazyeval lubridate viridisLite]; }; RoBMA = derive2 { name="RoBMA"; version="2.1.1"; sha256="0i4pawqsa4iy0xa1sahnbchbrip2cbqklfks29ffjwa511h8g510"; depends=[BayesTools bridgesampling callr coda extraDistr ggplot2 psych Rdpack rjags runjags scales]; }; @@ -4482,7 +4495,7 @@ in with self; { RobustLinearReg = derive2 { name="RobustLinearReg"; version="1.2.0"; sha256="06137f516gyj64qdmwby7m1xnvj4hxzpqj454jn0xcinvl89380w"; depends=[]; }; RobustRankAggreg = derive2 { name="RobustRankAggreg"; version="1.1"; sha256="1pslqyr1lji1zvcrwyax4zg2s81p1jnhfldz8mdfhsp5y7v8iar3"; depends=[]; }; RockFab = derive2 { name="RockFab"; version="1.2"; sha256="1b5mhfll5vmqwl4pblmclyx9604vn07jyza02rm0jcsx915ms8sc"; depends=[EBImage rgl]; }; - Rodam = derive2 { name="Rodam"; version="0.1.10"; sha256="07ydws3b4z88v9iah3wyj3y5ar89f72g54qlz0h2p56785jz0jci"; depends=[httr]; }; + Rodam = derive2 { name="Rodam"; version="0.1.12"; sha256="01pjyz4sjdvmjicvajvhryv9b3kzwdyba0vwj0gvyrf6wiahv4qx"; depends=[httr]; }; Rogue = derive2 { name="Rogue"; version="2.0.0"; sha256="1dxyxgwy0hylbbgi9vc6g8cll2qxim2wl9zva643g4aq4da5wwsg"; depends=[ape cli fastmatch matrixStats Rdpack Rfast TreeDist TreeTools]; }; RolWinMulCor = derive2 { name="RolWinMulCor"; version="1.2.0"; sha256="0vfsgp0qvv6pnpai8nyy0xzzlzyjwx98xrhlwlks9dbm84wg8vqr"; depends=[colorspace gtools pracma scales zoo]; }; RonFHIR = derive2 { name="RonFHIR"; version="0.4.0"; sha256="1ajpgpp300m0zzqzzwsn8sfy8x751hrr8py9n9xvzjmkgyrh4hhw"; depends=[httr jsonlite R6 stringr]; }; @@ -4501,7 +4514,7 @@ in with self; { Rphylopars = derive2 { name="Rphylopars"; version="0.3.2"; sha256="1cpq8581lk2bzz59r4kwdpg6yc9a2qidnrz3wnky2y2z11gyy47v"; depends=[ape doBy geiger MASS Matrix phylolm phytools Rcpp RcppArmadillo]; }; Rpoet = derive2 { name="Rpoet"; version="1.1.0"; sha256="11gp4zg0wc2a21956355rkr3i3dyaabfz0z30z4phn8s7y3yqr92"; depends=[]; }; Rpoppler = derive2 { name="Rpoppler"; version="0.1-0"; sha256="19nvv45ahp0c241p1xzlq0sq5qarqg66jw5f1anhqnfi2hi91hcm"; depends=[]; }; - RprobitB = derive2 { name="RprobitB"; version="0.1.1"; sha256="1wczz78mgz6pjszx4lwv17j83c1aqw2h56865ysisi5v9ddvs0aa"; depends=[mvtnorm Rcpp RcppArmadillo viridis]; }; + RprobitB = derive2 { name="RprobitB"; version="1.0.0"; sha256="0707q72j0q1w17fvbj5dw1yf3xk0a62y2654g5cj5zgglxclyd6z"; depends=[mvtnorm Rcpp RcppArmadillo viridis]; }; Rprofet = derive2 { name="Rprofet"; version="2.2.1"; sha256="150123vxdd31p96f3vsri46ryfng2xvnjgm6mdiqczg48xyfpbdp"; depends=[binr ClustOfVar ggplot2 gridExtra plyr sqldf stringr]; }; Rpvt = derive2 { name="Rpvt"; version="0.1.1"; sha256="0ggd6ikp2s9z4086y8w3qzb9jcyyqpby41p3ayjwam94skh154mf"; depends=[Rcpp RcppArmadillo Rdpack]; }; Rquake = derive2 { name="Rquake"; version="2.4-4"; sha256="1929qxqbb6s316zb9x2q1kwz2pvwpvqr1w6iw8vm5vijyf1nvv30"; depends=[GEOmap MBA minpack_lm RPMG RSEIS]; }; @@ -4531,6 +4544,7 @@ in with self; { Rthingsboard = derive2 { name="Rthingsboard"; version="0.2.4"; sha256="0577fb7f1dm5a3xz6q9gmg97i2080hv2qpq944wilfmfzz0xa4h1"; depends=[dplyr httr logger]; }; Rtnmin = derive2 { name="Rtnmin"; version="2016-7.7"; sha256="0f8ii87v29v61b93hx2yxdppp3nvgnl5imp80sbb4bjsdg0mf989"; depends=[]; }; Rtrack = derive2 { name="Rtrack"; version="1.0.0"; sha256="01xgbz37rsbjkix9nlx64qyimsbbgsmyswcv4jbpqasvkp6d480q"; depends=[crayon Hmisc KernSmooth openxlsx pbapply randomForest raster readxl rgeos rjson sp]; }; + Rtropical = derive2 { name="Rtropical"; version="1.2.1"; sha256="1r4585z1fna9s8whaq1w0drndg9cpqmrmqylj3m2ahfppb0xr3ic"; depends=[ape caret lpSolve lpSolveAPI RcppAlgos Rfast]; }; Rtsne = derive2 { name="Rtsne"; version="0.15"; sha256="0v17vxizrs1msay24xl2bckfajr2c82wpqj07lyssbrq197nwdsn"; depends=[Rcpp]; }; Rttf2pt1 = derive2 { name="Rttf2pt1"; version="1.3.9"; sha256="0w9ybqvr4bvpa2dyfkrscg4in0x2dkzmxdn1n6003j1rss7f8rw6"; depends=[]; }; RtutoR = derive2 { name="RtutoR"; version="1.2"; sha256="19wmi30b5i6zj673d76gxl6j0k3ppfyl5fqrcs0dwmmadrrvbajq"; depends=[colourpicker devtools dplyr DT FSelector ggplot2 ggthemes officer plotly rlang rmarkdown shiny shinyBS shinydashboard shinyjs tidyr]; }; @@ -4547,7 +4561,7 @@ in with self; { Rwofost = derive2 { name="Rwofost"; version="0.8-3"; sha256="1x6ia49xrdqcxilq12g47gd00smm5jdrq7xavndd3dcnvl1nqk1y"; depends=[meteor Rcpp]; }; Rwordseg = derive2 { name="Rwordseg"; version="0.3-2"; sha256="10jhfalh45rrcm76hwz4b5yl408ndx2wkr0i3q1avx6z6i45d8s6"; depends=[HMM tmcn]; }; Rwtss = derive2 { name="Rwtss"; version="0.9.1"; sha256="0ihpn96l0bj34ph747q7rfq78sbjjb4hhdjr2a7agc97rrggcr94"; depends=[assertthat dplyr geosphere ggplot2 httr jsonlite lubridate magrittr purrr reshape2 stringr tibble zoo]; }; - RxCEcolInf = derive2 { name="RxCEcolInf"; version="0.1-4"; sha256="0qyhxqd5yi4d1prj0i4g3k29zi0mx6wkjx24ynb4arxw6h1vabh4"; depends=[coda lattice MASS MCMCpack mvtnorm]; }; + RxCEcolInf = derive2 { name="RxCEcolInf"; version="0.1-5"; sha256="01n74xnhz1fdvb63g0lxkzsdp1frspin4a764l358immjivdrx2v"; depends=[coda lattice MASS MCMCpack mvtnorm]; }; RxODE = derive2 { name="RxODE"; version="1.1.2"; sha256="12x8mi2d4s1qpqic8fp2axgn1gj4nfylsp4i5wkl1if6876kl3ip"; depends=[assertthat backports BH checkmate cli dparser ggplot2 inline lotri magrittr memoise PreciseSums qs Rcpp RcppArmadillo RcppEigen rex sitmo StanHeaders sys]; }; RxnSim = derive2 { name="RxnSim"; version="1.0.3"; sha256="0fi4aic2brfbl6rsnnfwqq7l8ygvlmr98w0v749l3djpgn7sfrig"; depends=[data_table fingerprint rcdk rJava]; }; Ryacas = derive2 { name="Ryacas"; version="1.1.3.1"; sha256="0c258p7ibas4xbq1wh8c1nfqf6r9d0hicrf8mkkyriw4mb6wmzqq"; depends=[magrittr Rcpp]; }; @@ -4712,7 +4726,6 @@ in with self; { SMVar = derive2 { name="SMVar"; version="1.3.3"; sha256="17wr4lixy3p32gr4jq02d7zsr88yrbddjsvynzdsdrwbxf4mwqhp"; depends=[]; }; SNFtool = derive2 { name="SNFtool"; version="2.3.1"; sha256="05hz230aq5wbzhknxzr4iqv3nqjhbpf66n6bp1rc5h2jgz2yfbwq"; depends=[alluvial ExPosition]; }; SNPMClust = derive2 { name="SNPMClust"; version="1.3"; sha256="1gad1jfla4qpczh8vpwyss5cckzgpffsyj0d71r8drbspr4i3r90"; depends=[MASS mclust]; }; - SNPassoc = derive2 { name="SNPassoc"; version="2.0-2"; sha256="16raq5nkm24xqfshncwmf46z2naf2fcixgjs9b7gy1368wn3ahzl"; depends=[BiocStyle ggplot2 haplo_stats mvtnorm plyr poisbinom survival tidyr]; }; SNPfiltR = derive2 { name="SNPfiltR"; version="0.1.0"; sha256="1s6yj71yz4rkbpp27by5sb4lkcwcvyw7zj10wlzgfrm8sy3vv2wj"; depends=[adegenet cluster ggplot2 ggridges gridExtra Rtsne vcfR]; }; SNPknock = derive2 { name="SNPknock"; version="0.8.2"; sha256="121pdgvdffj61hw8x8m76na0cg5iw5gb586q05ikw5d959mmbzrs"; depends=[Rcpp RcppArmadillo RcppProgress Rdpack]; }; SNPmaxsel = derive2 { name="SNPmaxsel"; version="1.0-3"; sha256="0pjvixwqzjd3jwccc8yqq9c76afvbmfq0z1w0cwyj8bblrjpx13z"; depends=[combinat mvtnorm]; }; @@ -4880,7 +4893,7 @@ in with self; { SetRank = derive2 { name="SetRank"; version="1.1.0"; sha256="0p7vwsw05s5hfw1mfh3fbm9nfzsymnxzrdjin7k21dx7asb618wy"; depends=[data_table igraph XML]; }; SetTest = derive2 { name="SetTest"; version="0.2.0"; sha256="08wc6cbnannmwkncqhpcw6l0y7c1v7z3awk5j7fd853nszfmpbk0"; depends=[]; }; Seurat = derive2 { name="Seurat"; version="4.0.5"; sha256="18svlpfbgs5vdzw2jyg99kj0jacag6dwwhjdg1zpmrh0fm0praxg"; depends=[cluster cowplot fitdistrplus future future_apply ggplot2 ggrepel ggridges httr ica igraph irlba jsonlite KernSmooth leiden lmtest MASS Matrix matrixStats miniUI patchwork pbapply plotly png RANN RColorBrewer Rcpp RcppAnnoy RcppEigen RcppProgress reticulate rlang ROCR Rtsne scales scattermore sctransform SeuratObject shiny spatstat_core spatstat_geom tibble uwot]; }; - SeuratObject = derive2 { name="SeuratObject"; version="4.0.2"; sha256="076bd6xmpnspnz7raw03mfgknnygx79sj3c9q6yhpanc46i9gvk4"; depends=[Matrix Rcpp RcppEigen rlang]; }; + SeuratObject = derive2 { name="SeuratObject"; version="4.0.3"; sha256="06gch6416hmwpfxa7bidw5izfp4yvkdka7mvxp6grmldnj5iqm6g"; depends=[Matrix Rcpp RcppEigen rlang]; }; ShapeChange = derive2 { name="ShapeChange"; version="1.4"; sha256="1ch7avx8mxjk8vrp17inaihmbsv968wflyk1n4fbjvacbl24vn2b"; depends=[coneproj quadprog]; }; ShapePattern = derive2 { name="ShapePattern"; version="2.1.0"; sha256="10lqapjw2vypz1rrwgr7maw79g5j7g3gfp38g88w1sxlxasmx7by"; depends=[igraph landscapemetrics raster rgdal rgeos sp]; }; ShapeRotator = derive2 { name="ShapeRotator"; version="0.1.0"; sha256="1pg2m1wh7fbchm8gp3mngfnf5g2rbhvzim1bpzqyvxqpx6ynicsa"; depends=[plot3D]; }; @@ -4962,6 +4975,7 @@ in with self; { SmarterPoland = derive2 { name="SmarterPoland"; version="1.8"; sha256="19pxr1zch2bm5jw676dp0p2crvmdmvzyxz07vhx926axpb4i0xbp"; depends=[ggplot2 htmltools httr jsonlite rjson]; }; SmithWilsonYieldCurve = derive2 { name="SmithWilsonYieldCurve"; version="1.0.1"; sha256="0qvhd1dn2wm9gzyp6k7iq057xqpkngkb4cfmvmjqmf0vhysp371w"; depends=[]; }; SmoothHazard = derive2 { name="SmoothHazard"; version="1.4.1"; sha256="147wjxgxnijpmixrfyl8kd4scz2w1xb8dcwvpr60zg32nv22g17r"; depends=[lava mvtnorm prodlim]; }; + SmoothTensor = derive2 { name="SmoothTensor"; version="0.1.0"; sha256="0x9gk5yan034nbr0yxdgs4c9lhxfh8dy33jlfhrg2fapzg0n0b0m"; depends=[Matrix rTensor]; }; SmoothWin = derive2 { name="SmoothWin"; version="3.0.0"; sha256="0zq2sq0w4rs3hrra24wgbbzv88d1hx6m8q8gmc5h6nbs1172hs66"; depends=[nlme Rfast]; }; Snake = derive2 { name="Snake"; version="1.0"; sha256="10i1bqsva70lzavfqvc56ga70ddjfwf0hqpspj8fqwa0jw86jmbh"; depends=[]; }; SnakesAndLaddersAnalysis = derive2 { name="SnakesAndLaddersAnalysis"; version="2.1.0"; sha256="0h3664h6d32q201qfyv9y2gg4fhg3azdpwpmx4qfbc10hsc1ghl9"; depends=[]; }; @@ -5011,8 +5025,7 @@ in with self; { SpatialAcc = derive2 { name="SpatialAcc"; version="0.1-4"; sha256="09rkzfzg6nh4n7dizkqrz651kp617l2557c9qpxacspl3ngbm82i"; depends=[sp]; }; SpatialBSS = derive2 { name="SpatialBSS"; version="0.12-0"; sha256="173zr8r0wp7zcg4ziqagfzzlwf5gjcywj5nqvsnnpwbgjagpfla1"; depends=[JADE Rcpp RcppArmadillo sp]; }; SpatialBall = derive2 { name="SpatialBall"; version="0.1.0"; sha256="09iy1smfqnb0rd2s9a1wqgscb1plwcwwph6a8215l4zrs6svszv2"; depends=[dplyr ggplot2 hexbin lubridate RColorBrewer]; }; - SpatialEpi = derive2 { name="SpatialEpi"; version="1.2.5"; sha256="1gzxalmp5h58dvc161wf4dmjzr6xnblgdj5s0iibwfgzd1bzh0s0"; depends=[maptools MASS Rcpp RcppArmadillo sp spdep]; }; - SpatialEpiApp = derive2 { name="SpatialEpiApp"; version="0.3"; sha256="0svnnzqshk08s58ishy8xhqch44mb5svgfphkvpgysdd68dgaysr"; depends=[dplyr dygraphs ggplot2 htmlwidgets knitr leaflet mapproj maptools RColorBrewer rgdal rgeos rmarkdown shiny shinyjs SpatialEpi spdep xts]; }; + SpatialEpi = derive2 { name="SpatialEpi"; version="1.2.6"; sha256="053im9w1s5q388dd11lxplwf8vk83k3raqi93d9f475zfm221s49"; depends=[maptools MASS Rcpp RcppArmadillo sp spdep]; }; SpatialExtremes = derive2 { name="SpatialExtremes"; version="2.0-9"; sha256="1mhn1c8n3bmgf0fjyac3wji4790zswzkqliqcv3n8kv9806crb0y"; depends=[fields maps]; }; SpatialFloor = derive2 { name="SpatialFloor"; version="1.1.0"; sha256="07mwgcvkkq478l6wxvrdjs9d578x0kgs5xy86lgy5my0xqfcv6y8"; depends=[blocksdesign fields reshape2 taRifx]; }; SpatialGraph = derive2 { name="SpatialGraph"; version="1.0-2"; sha256="0cwswa5g3a6ng8qkwi04jz9pma4i0c16m7jpq6z3djzjin0znyk2"; depends=[igraph rgeos shape sp splancs]; }; @@ -5299,7 +5312,7 @@ in with self; { TestDesign = derive2 { name="TestDesign"; version="1.2.6"; sha256="19kaqvlghiwgfnr53f7grj2bsih743i3mls57sblzwzwr3p59qkd"; depends=[crayon foreach logitnorm lpSolve Rcpp RcppArmadillo]; }; TestDimorph = derive2 { name="TestDimorph"; version="0.4.1"; sha256="09r265mmr3bk78pqca30n9bz62p6822mg0nhrfaip2lxhl3bfqcw"; depends=[caret corrplot cutpointr dplyr ggplot2 Morpho multcompView tidyr tmvtnorm truncnorm]; }; TestFunctions = derive2 { name="TestFunctions"; version="0.2.0"; sha256="018nkz8r6vqahrzq3d588i3ffb1bmd1pdk87j4ivcdsx99mq15sn"; depends=[]; }; - TestGardener = derive2 { name="TestGardener"; version="0.1.4"; sha256="1230nrislm4ci22s9y160842qiccf3ngmfq8fywm8vg57xggz1dj"; depends=[dplyr fda ggplot2 ggpubr knitr pracma rgl rmarkdown stringr tidyr utf8]; }; + TestGardener = derive2 { name="TestGardener"; version="2.0.0"; sha256="1n38y2b3r0xf44jasga67cg820f1llb52farkv8dnp4v7bzld6zs"; depends=[dplyr fda ggplot2 ggpubr knitr pracma rgl rmarkdown stringr tidyr utf8]; }; TestScorer = derive2 { name="TestScorer"; version="1.7.2"; sha256="006c3g3gx55mfr93srldwvgz5vm6nkr3f57yi4qg6krn0d32865f"; depends=[]; }; TestingSimilarity = derive2 { name="TestingSimilarity"; version="1.1"; sha256="1iq0wh13rl6rby44ql4d286r1akzwmbpsvnq9p8lkl8709z0d34w"; depends=[alabama DoseFinding lattice]; }; TexExamRandomizer = derive2 { name="TexExamRandomizer"; version="1.2.3"; sha256="0l0vpx4rkib2m8hwhwy9j8pqyf7gpb9qg8wpnh3238snwpadgy3a"; depends=[assertthat jsonlite Rcpp stringr]; }; @@ -5315,7 +5328,7 @@ in with self; { ThreeWiseMonkeys = derive2 { name="ThreeWiseMonkeys"; version="0.1.0"; sha256="1qdb3m15q0gg8dk2znc2syy2jdqsp2893a7ilfa8rg3r2vps86yg"; depends=[stringr tuneR]; }; Thresher = derive2 { name="Thresher"; version="1.1.3"; sha256="16zf5cwc2c5j61xcrqsycwrsc162spyqgk9mac7n37mymn5agbwp"; depends=[ade4 ClassDiscovery colorspace MASS movMF oompaBase PCDimension]; }; ThresholdROC = derive2 { name="ThresholdROC"; version="2.9.0"; sha256="1mzz05aqq6crcfm5bbv0gbpvndk0yy1lf4fxz8zva790g16cilq0"; depends=[ks MASS numDeriv pROC]; }; - TiPS = derive2 { name="TiPS"; version="1.0"; sha256="0wsgglgh5li76zvr2srp3imj5vqi2n6kanxamhfmgjmws4lf9klq"; depends=[gtools inline Rcpp stringr]; }; + TiPS = derive2 { name="TiPS"; version="1.1.0"; sha256="08xa0xg8kgjccd8qhplpxyfikrm1yfx2spn6y381p7z08985vnsk"; depends=[gtools inline Rcpp stringr]; }; TickExec = derive2 { name="TickExec"; version="1.1"; sha256="0v0m0wi49yw0ply19vnirl2zwnk61sxalx24l8cadvkssgs13509"; depends=[]; }; TiddlyWikiR = derive2 { name="TiddlyWikiR"; version="1.0.1"; sha256="0vwwjdmfc8c0y2gfa8gls1mzvp29y39c9sxryrgpk253jj9px1kr"; depends=[]; }; TideCurves = derive2 { name="TideCurves"; version="0.0.5"; sha256="1cnfnmwmlicsi243058zq3302niwk2l1agrrjy4k7rf1v7gfy6xx"; depends=[chron data_table fields]; }; @@ -5412,7 +5425,7 @@ in with self; { UScensus2010 = derive2 { name="UScensus2010"; version="0.20.0"; sha256="0dby532dmmhaz7gisihg4dn70jyx5llfvm2zl2h0pxyqrxvm69d2"; depends=[foreign maptools sp]; }; USgas = derive2 { name="USgas"; version="0.1.1"; sha256="1yx5qc7ilb1g2cv9w35ryw778qbi9fs0licxc2xcp5fbp709pd65"; depends=[]; }; USgrid = derive2 { name="USgrid"; version="0.1.2"; sha256="0babwjnbdyfa2cf65gn08nzy1bs92i56lnhpx558yn0dyk75cz5s"; depends=[tsibble]; }; - USpopcenters = derive2 { name="USpopcenters"; version="0.1.0"; sha256="0m2rjgwqhsx31ykcfwln3q7d6vnb9f0qbyncyg8fbs0iq1wadrmg"; depends=[]; }; + USpopcenters = derive2 { name="USpopcenters"; version="0.1.1"; sha256="1g7pnw4qfp4vpcb9wr3bjl5702lwnv6fvdjgsv90r4ana1rkw3c6"; depends=[]; }; UStatBookABSC = derive2 { name="UStatBookABSC"; version="1.0.0"; sha256="16r6clhfaalfsg5hmvzm8a128zygxax5hyc0vr1q9bsw9hj7cs0c"; depends=[]; }; UWHAM = derive2 { name="UWHAM"; version="1.0"; sha256="1qaj8anaxqnx4nc6vvzda9hhhzqk9qp8q7bxm26qgia4hgascnrv"; depends=[trust]; }; UdderQuarterInfectionData = derive2 { name="UdderQuarterInfectionData"; version="1.0.0"; sha256="084bq5ai1ccp4www64z0ipic74zkd8j1ygv0py900164a25wdr9b"; depends=[]; }; @@ -5431,7 +5444,7 @@ in with self; { UpSetR = derive2 { name="UpSetR"; version="1.4.0"; sha256="007i0njnjjy7vbrxabwav7a1kk2n0hn2mkvqsdzzfk10ckp5y7im"; depends=[ggplot2 gridExtra plyr scales]; }; UsingR = derive2 { name="UsingR"; version="2.0-6"; sha256="1lr8z45r5s7fxrd42rswm6w7s3k5nds244b9d525jb5v4n8w9kpw"; depends=[HistData Hmisc MASS]; }; UtilityFrailtyPH12 = derive2 { name="UtilityFrailtyPH12"; version="1.0"; sha256="06f5gmwwk1r14ab6v5jcxz0pmdph7ffi4y57mjg9byn7pjnibflk"; depends=[bindata mvtnorm Phase123 Rcpp RcppArmadillo]; }; - V8 = derive2 { name="V8"; version="3.5.0"; sha256="0wxsnmy623j0qrhiqws03d49dsspx44vra3amsivh5fmlrhsj3js"; depends=[curl jsonlite Rcpp]; }; + V8 = derive2 { name="V8"; version="3.6.0"; sha256="0xqk4rcv255r2wll2jpzf9ix8j6hbhw0vbhg2g9i6z2apyc9i5m3"; depends=[curl jsonlite Rcpp]; }; VALERIE = derive2 { name="VALERIE"; version="1.1.0"; sha256="15z8234jhh7hv3gijrvy8hap6gdgvm6qll9b00qbji7vyc3dg4pg"; depends=[GenomicAlignments GenomicRanges ggplot2 ggplotify ggpubr IRanges pheatmap plyr Rsamtools scales]; }; VAM = derive2 { name="VAM"; version="1.0.0"; sha256="04lq8i4zwdc9a4n4hvabdyv4a4cmmqbf534cdnnck7jc0dk5rphr"; depends=[MASS Matrix]; }; VAR_etp = derive2 { name="VAR.etp"; version="0.7"; sha256="0py5my3ilhcmz44m15hh0d219l9cz7rda4a9gbmf8wh9cgvvj1s3"; depends=[]; }; @@ -5495,7 +5508,7 @@ in with self; { VeryLargeIntegers = derive2 { name="VeryLargeIntegers"; version="0.1.8"; sha256="0yvm3kkc7ssk85ripdgbxj8gazqb1dfswgjy63c3gb135zi2cbqk"; depends=[Rcpp]; }; VetResearchLMM = derive2 { name="VetResearchLMM"; version="1.0.0"; sha256="1a7wm04bsr5shak7l8ypxlhlnx3qkq1jdpjnji1n05p6b00ih9h1"; depends=[ggplot2 lme4 lmerTest multcomp nlme]; }; ViSiElse = derive2 { name="ViSiElse"; version="1.2.2"; sha256="1ay09dahlqnfrgf4gl4s45a4ahrk2xliagxqz5h826w2vzsawqcc"; depends=[chron colorspace ggplot2 Matrix reshape2 stringr]; }; - VicmapR = derive2 { name="VicmapR"; version="0.1.7"; sha256="1kk1dss8dz66xpgkbrgxyhf6giydbyp3vwlpm78dr5pfzfyi9l6c"; depends=[cli curl DBI dbplyr dplyr glue httr magrittr purrr rlang sf xml2]; }; + VicmapR = derive2 { name="VicmapR"; version="0.1.8"; sha256="0lnpbbspsl1q4z2i4jmz7j3idqwdxrngpcavnppp68ajyz4i5xkr"; depends=[cli curl DBI dbplyr dplyr glue httr lubridate magrittr purrr rlang rvest sf xml2]; }; VineCopula = derive2 { name="VineCopula"; version="2.4.3"; sha256="05zajfncr9iyzpv98zw3ph2drxbnfjwjw8l244j49das6jkplwj2"; depends=[ADGofTest lattice MASS mvtnorm]; }; Visualize_CRAN_Downloads = derive2 { name="Visualize.CRAN.Downloads"; version="1.0.1"; sha256="0z2v2izn4aj3i6f5gh8r7pkrqpbb82bv9v4s4vqxgm066a51m4p2"; depends=[cranlogs htmlwidgets plotly]; }; VorteksExport = derive2 { name="VorteksExport"; version="0.1.8"; sha256="0r9wmd9bdarjkqmpwp85xz27nbyhjkcpxm8qb8bqjmxq4nds6nxx"; depends=[]; }; @@ -5657,7 +5670,7 @@ in with self; { acepack = derive2 { name="acepack"; version="1.4.1"; sha256="1f98rpfjmhd92rdc3j004plyfpjailz6j0ycysbac0kgj83haxc2"; depends=[]; }; acfMPeriod = derive2 { name="acfMPeriod"; version="1.0.0"; sha256="1yww8isfrbs2v9s94hx7p2imyszcgadwafdgpj438n2ik0q6p9d5"; depends=[MASS]; }; acid = derive2 { name="acid"; version="1.1"; sha256="030i0y8s283ivbsmjccpbv9v7mgbcg2jk9df7vgcbbns74swf9hd"; depends=[gamlss gamlss_dist Hmisc]; }; - acled_api = derive2 { name="acled.api"; version="1.1.4"; sha256="115cyp8x576dkkfbhg41hklwjvkj6v1cxrq8xcp9vcry4njaf6vi"; depends=[httr jsonlite]; }; + acled_api = derive2 { name="acled.api"; version="1.1.5"; sha256="0x0hp5cqpxal1360xjpyciwsl8hsywp2glwcgqqgrckl3y89hh7x"; depends=[httr jsonlite]; }; acmeR = derive2 { name="acmeR"; version="1.1.0"; sha256="000b2hqlhj93958nddw0fqb15ahigs08najv2miivym046x04mf7"; depends=[foreign]; }; acnr = derive2 { name="acnr"; version="1.0.0"; sha256="087hq4i7jp67ba2finzsqjfnqbiprl33na6ryjv9zqzsdawj9cym"; depends=[]; }; acopula = derive2 { name="acopula"; version="0.9.3"; sha256="0vvbbw8pfs9jwfz5c57lw48pr0qj661r0ys007q6zf9jmlrhx1ln"; depends=[]; }; @@ -5753,7 +5766,7 @@ in with self; { afthd = derive2 { name="afthd"; version="1.1.0"; sha256="0gg2cp3sj28f3pi5rqh737hna3imwarwas01jacm0m2h27587k7y"; depends=[glmnet photobiology R2jags rstpm2 survival]; }; agRee = derive2 { name="agRee"; version="0.5-3"; sha256="1wi8jn14kpsj5z49my6fz8j6zxysddxm8svw86cnzsmnbj6mzq7x"; depends=[coda lme4 miscF R2jags]; }; aggregation = derive2 { name="aggregation"; version="1.0.1"; sha256="0j9g604m2ccc7hcy02539yja9cf3xcbl25gvp838bp4x8w18my46"; depends=[]; }; - aghq = derive2 { name="aghq"; version="0.3.0"; sha256="10v3mfngriqq92zz23vnbp703rgp9fqhjaqrsra1ny6s65ddg67a"; depends=[Matrix mvQuad numDeriv polynom rlang]; }; + aghq = derive2 { name="aghq"; version="0.3.1"; sha256="1sl2w6avkrz3j1yhyzvg88l1yvf2mi6zbdjr3zdrzm2ccgkww725"; depends=[Matrix mvQuad numDeriv polynom rlang]; }; aglm = derive2 { name="aglm"; version="0.4.0"; sha256="0rcyrzfi3l1k53c9qs1gfrcflnhdnri9sq6py8s6fw4wcn55kf67"; depends=[assertthat glmnet mathjaxr]; }; agop = derive2 { name="agop"; version="0.2-3"; sha256="1z90a07wzn5z4cbafwpfh3l3v1bgq9g89qbdjm51f78zynnb27dk"; depends=[]; }; agriTutorial = derive2 { name="agriTutorial"; version="0.1.5"; sha256="0c0p0bqcrnx34q5brnvgq10wkzahvgyybaz2xfmcghbdvzahd2dx"; depends=[emmeans ggplot2 lattice lmerTest nlme pbkrtest]; }; @@ -5764,7 +5777,7 @@ in with self; { agrmt = derive2 { name="agrmt"; version="1.42.7"; sha256="00vhwlz6vf2p3x51arxngd0vzgw8mb9fi8dq0b2lvqbpqqv6d071"; depends=[]; }; agrostab = derive2 { name="agrostab"; version="0.1.0"; sha256="0mcskv3144j594wqljzn5pwbhkxh6sb76b1c2wabzjvi61zrapiv"; depends=[dplyr ggplot2 rlang]; }; agsemisc = derive2 { name="agsemisc"; version="1.3-1"; sha256="1905q35jgjhghlawql43yh296kbpysp927x3hj750yshz5zayzyr"; depends=[lattice MASS]; }; - agtboost = derive2 { name="agtboost"; version="0.9.1"; sha256="01gydh7rlsgv759y3nahm9qi8pd24x37rpzv1frwzrr5jfbajqdl"; depends=[Rcpp RcppEigen]; }; + agtboost = derive2 { name="agtboost"; version="0.9.2"; sha256="1zprx5w658c16g2c2mi1mr3nf030yghzjgmxcafjkzx601yrn8if"; depends=[Rcpp RcppEigen]; }; ahMLE = derive2 { name="ahMLE"; version="1.18"; sha256="1yf8v2im13lsa6qadxws9cxvqf0fq17s27ran9lr1bbmxh84prpr"; depends=[invGauss Matrix Rcpp RcppArmadillo survival]; }; ahaz = derive2 { name="ahaz"; version="1.14"; sha256="1z7w5rxd5cya7kxhgxqvn72k87y33ginxra9g7j9wrfs5jgx6kvx"; depends=[Matrix survival]; }; ahnr = derive2 { name="ahnr"; version="0.3.1"; sha256="1g8m3q108ricfyn4fjjaihpr93xz7fm2sfzg3i0fz1n1i703jwm8"; depends=[ggplot2 magrittr matrixcalc pdist pracma purrr visNetwork]; }; @@ -5840,10 +5853,9 @@ in with self; { ammistability = derive2 { name="ammistability"; version="0.1.2"; sha256="0ak20y5iv1cg5y06srdlfk5qp5c463ky41l350shnqpq550azy11"; depends=[agricolae ggcorrplot ggplot2 mathjaxr Rdpack reshape2]; }; ampd = derive2 { name="ampd"; version="0.2"; sha256="0bi8qngd37n60ym516yjcahxc536vdwm60rq5ld32170hww69j7c"; depends=[]; }; ampir = derive2 { name="ampir"; version="1.1.0"; sha256="0nnsxrnq3m1frrjp3i8bhm67x6xnl0scyb67wxgm5x7b187svhfj"; depends=[caret kernlab Peptides Rcpp]; }; - amt = derive2 { name="amt"; version="0.1.4"; sha256="0xdrpkirdxmni3bcqjjx8xxh3b0bllmsgc3r7h9zd7sf0p3aldhs"; depends=[checkmate circular ctmm dplyr fitdistrplus lubridate magrittr purrr raster Rcpp Rdpack rgeos rlang sf sp survival tibble tidyr]; }; anMC = derive2 { name="anMC"; version="0.2.2"; sha256="0ab215nrqn535g9ayqzvgdckhwcrij1mc1296pvlj3grn3f8rhws"; depends=[mvtnorm Rcpp RcppArmadillo]; }; anacor = derive2 { name="anacor"; version="1.1-3"; sha256="0mj8g9p4fla0ax9jvcq7kii4lrhj8g872p11nys06anva22qjp51"; depends=[car colorspace fda]; }; - analogsea = derive2 { name="analogsea"; version="1.0.0"; sha256="1xqfx2bbi6ipgcb952gmgnhf9bc6jynid2ydl8h82mvy9z727zaz"; depends=[httr jsonlite magrittr yaml]; }; + analogsea = derive2 { name="analogsea"; version="1.0.3"; sha256="1mf9baniria2vq5k5djm8jfj3lyr2p9q9idcy0ifcrmzyrmgwwi3"; depends=[httr jsonlite magrittr yaml]; }; analogue = derive2 { name="analogue"; version="0.17-6"; sha256="0c5h8nnbflydv35ja1pfhyx7ifwlriwgcnrmxj5il5lvcr70y1vi"; depends=[brglm lattice MASS mgcv princurve vegan]; }; analogueExtra = derive2 { name="analogueExtra"; version="0.1-1"; sha256="1s3qs10hf6hkna0bicid1mc8x8r449bl93xpgyw6lnsjgh2yx62c"; depends=[analogue rgl vegan3d]; }; analysisPipelines = derive2 { name="analysisPipelines"; version="1.0.2"; sha256="1rxam52wrbcjrvixb35b9ha37i8a0fczby49vmgzpnrbvkc50ldx"; depends=[dplyr futile_logger ggplot2 magrittr pipeR proto purrr RCurl rlang]; }; @@ -5870,9 +5882,9 @@ in with self; { anomaly = derive2 { name="anomaly"; version="4.0.2"; sha256="110rdzz6l80vjc0q0gb0f829vb70r97p19ywa7gbl2cbkj2s1cci"; depends=[assertive BH caTools cowplot dplyr ggplot2 magrittr Rcpp Rdpack reshape2 rlang robust robustbase runner xts zoo]; }; anovir = derive2 { name="anovir"; version="0.1.0"; sha256="1x7lvj7xchbv6siyc9miivmf0rlxrjflal4icyvbxgdr285s2s9w"; depends=[bbmle]; }; anscombiser = derive2 { name="anscombiser"; version="1.0.0"; sha256="0jpmxgr5hfyv1hcjn4h1063ch3b3xlgqv983f4f9d2ajz5i5mdwv"; depends=[]; }; - antaresEditObject = derive2 { name="antaresEditObject"; version="0.2.2"; sha256="055d3147s139idgqi6zb9l716nc2x40gknhcyqcygcm5nqrxjfzs"; depends=[antaresRead assertthat data_table doParallel fs pbapply whisker]; }; - antaresProcessing = derive2 { name="antaresProcessing"; version="0.18.0"; sha256="1rw7g4706g4fdx7c7magxqj71h6iwkbslmyrqfwna4irnifjmv7g"; depends=[antaresRead data_table]; }; - antaresRead = derive2 { name="antaresRead"; version="2.2.8"; sha256="02cpzd5iwfqmfb1ahl20apsd3n6873qxfa9f0fslbwn59w7hxm1j"; depends=[bit64 data_table doParallel jsonlite lubridate pbapply plyr shiny stringr]; }; + antaresEditObject = derive2 { name="antaresEditObject"; version="0.3.0"; sha256="04rdq3kbliac1iaxqflf3qhh58qgl9pxb2qh44wkknb91ga0845x"; depends=[antaresRead assertthat data_table doParallel pbapply whisker]; }; + antaresProcessing = derive2 { name="antaresProcessing"; version="0.18.1"; sha256="1dlq850xqh9534ws88ma3vv5r79cbabn6r6a2jmicxx116s7wjrz"; depends=[antaresRead data_table]; }; + antaresRead = derive2 { name="antaresRead"; version="2.2.9"; sha256="1g91fm614q3v5i5v6smp70fipya9rlcdshqixcsjniqcwvpvb01c"; depends=[bit64 data_table doParallel httr jsonlite lubridate pbapply plyr shiny stringr]; }; antaresViz = derive2 { name="antaresViz"; version="0.16"; sha256="0iczcawyj2rf0vxirkbprcsl43y62dhavw7ky50b6c2s5pi3mjzw"; depends=[antaresProcessing antaresRead assertthat data_table dygraphs geojsonio htmltools htmlwidgets leaflet leaflet_minicharts lubridate manipulateWidget plotly rAmCharts raster rgeos shiny sp spMaps webshot]; }; anthro = derive2 { name="anthro"; version="0.9.4"; sha256="0blsfz3ckizkg4r4i3ib6b4yh40krcy8133v32f3yc220g2g2za9"; depends=[survey]; }; anticlust = derive2 { name="anticlust"; version="0.5.6"; sha256="1f5z05p5fwfgcj4vzg6kg9vihamcdha74yyn9c04m4kydyngnm85"; depends=[Matrix RANN]; }; @@ -5909,7 +5921,7 @@ in with self; { aplot = derive2 { name="aplot"; version="0.1.1"; sha256="067yzy35spvs6jbccqpmvnjilglxzda6qqlqhjv311kfvnppzsyf"; depends=[ggfun ggplot2 ggplotify magrittr patchwork yulab_utils]; }; aplpack = derive2 { name="aplpack"; version="1.3.5"; sha256="0kv6sbw8832hlfc6164bfvg1ga4hkfw4c7i11dlz7mbhrw2vqm24"; depends=[]; }; apng = derive2 { name="apng"; version="1.1"; sha256="0g1rs8wdcbqhyjis2r1a4d96jf0486ncnap97yjv08nk574d42wp"; depends=[bitops]; }; - apollo = derive2 { name="apollo"; version="0.2.5"; sha256="12x09fbpavvgsnx0pf7q9w9glc8hb7s8cywvm0ym05v64r1v2dca"; depends=[coda Deriv matrixStats maxLik mnormt mvtnorm numDeriv randtoolbox Rcpp RcppArmadillo RcppEigen RSGHB tibble]; }; + apollo = derive2 { name="apollo"; version="0.2.6"; sha256="1qnh5r885myirqrrpwfxkbim1bsaqnkghgc8issd794r64ji2kpw"; depends=[coda Deriv matrixStats maxLik mnormt mvtnorm numDeriv randtoolbox Rcpp RcppArmadillo RcppEigen RSGHB tibble]; }; appler = derive2 { name="appler"; version="0.1.2"; sha256="03sivpv12ssn7dzq780rb4fg4nc7da7nlk6cijzq9yadxgv53svm"; depends=[glue httr jsonlite rvest xml2]; }; applicable = derive2 { name="applicable"; version="0.0.1.2"; sha256="0yzfk4ajdx4l3xivf6v9vn7fqvzfma4842cvjixrng83p2v25sdq"; depends=[dplyr ggplot2 glue hardhat Matrix proxyC purrr rlang tibble tidyr tidyselect]; }; appnn = derive2 { name="appnn"; version="1.0-0"; sha256="0wkpr6lcd68wlzk6n622ab7sd99l837073czn4k56hw8bw9v68j3"; depends=[]; }; @@ -5977,14 +5989,14 @@ in with self; { arse = derive2 { name="arse"; version="1.0.0"; sha256="0ssaalc058m09gfcr1n0s729rx2plia3zkhlynj67drclyvhyb0i"; depends=[dplyr pracma]; }; arsenal = derive2 { name="arsenal"; version="3.6.3"; sha256="0qvs3ld28djnjnggdhqjwq8sbv8zz322qahlvf7dnx35yqf6xkms"; depends=[knitr]; }; artfima = derive2 { name="artfima"; version="1.5"; sha256="1nqsq9fsqk9kag9n7i2r9yvf578nkdfrkkv7qy8650prka0jca2p"; depends=[gsl ltsa]; }; - arules = derive2 { name="arules"; version="1.6-8"; sha256="1gy6wrys1qqik65dyr325hdbfmd3fx9a2lzdnrr29g751hprjx2l"; depends=[Matrix]; }; + arules = derive2 { name="arules"; version="1.7-0"; sha256="0l7bjaqq0r9qcp1widsw8bvmy673rs4bij1difdphr8xs9yijswz"; depends=[generics Matrix]; }; arulesCBA = derive2 { name="arulesCBA"; version="1.2.0"; sha256="1d72lrfbyr2g7n6r04vyaqs3pvs3jhkfr4yfgn2fj690q3ff0qr3"; depends=[arules discretization glmnet Matrix]; }; arulesNBMiner = derive2 { name="arulesNBMiner"; version="0.1-8"; sha256="0kqvi7dzq3mrn6cq22gwxh4p54mgfn9s1sd2cfnbw1f9zp078lsn"; depends=[arules rJava]; }; arulesSequences = derive2 { name="arulesSequences"; version="0.2-25"; sha256="0vd5fgi1b45kgfm5yi9ygaxm0sb8qarz5lsknwh5gla3h0k7l66b"; depends=[arules]; }; arulesViz = derive2 { name="arulesViz"; version="1.5-0"; sha256="188zbmvhvq0cllgbhi16ic93ka9mk96ssdc8x24kmxqvq5zdmdh4"; depends=[arules colorspace dplyr DT ggnetwork ggplot2 igraph plotly scatterplot3d seriation tibble tidyr vcd visNetwork]; }; asVPC = derive2 { name="asVPC"; version="1.0.2"; sha256="07nfwr0lsfpwgfdgzcdn1svw8dnjfni5ga9q77yjd1bj0wf76ci2"; depends=[ggplot2 plyr]; }; asaur = derive2 { name="asaur"; version="0.50"; sha256="0c1rgic76w3i2xhna7i52lyc0p01s5b1mxyn55gqw6i19v9mq0b3"; depends=[]; }; - asbio = derive2 { name="asbio"; version="1.6-7"; sha256="08lmb4dmbsavw17z1jqqiv2jin5ms4zq8nv1n1cjmh8xk3sywafw"; depends=[combinat deSolve gWidgets2 gWidgets2tcltk lattice multcompView mvtnorm pixmap plotrix scatterplot3d]; }; + asbio = derive2 { name="asbio"; version="1.7"; sha256="0kchcpjv4hk66svr52x5d95gqrs5m64np65hjdlqclhjj7h3sjr1"; depends=[combinat deSolve gWidgets2 gWidgets2tcltk lattice multcompView mvtnorm pixmap plotrix scatterplot3d]; }; ascii = derive2 { name="ascii"; version="2.4"; sha256="0k675an7sl00bslx4yb6vvvgnp1kl244cfjljv632asqdm3rkmrv"; depends=[codetools digest survival]; }; asciiSetupReader = derive2 { name="asciiSetupReader"; version="2.4.0"; sha256="02s3p0qqa9h1kyx96c29blwgfkdm50p10kr14wklh19gibiznyfj"; depends=[data_table haven miniUI readr rstudioapi shiny stringr vroom zoo]; }; asciicast = derive2 { name="asciicast"; version="1.0.0"; sha256="0vga88cq2hzi0bwq43n1yz5cm8kaag9xpg8v73gj06fb93lhha9x"; depends=[curl jsonlite processx tibble uuid V8]; }; @@ -6050,7 +6062,7 @@ in with self; { atmcmc = derive2 { name="atmcmc"; version="1.0"; sha256="05k69b5wlysz3kh0yiqvshgvr0nyz34zkvn6bjs30cwz7s9j21pn"; depends=[]; }; atmopt = derive2 { name="atmopt"; version="0.1.0"; sha256="1h79ngq1236gz4w29fs3nj46a3m1x8a28z3xnhc6wn3a46cf8zzi"; depends=[DoE_base gtools hierNet]; }; atsd = derive2 { name="atsd"; version="1.2.0"; sha256="0jan8r5f2r3l2xpdf9rrv4smkr2l645rfdgdfjb1xa54jd3pqvqs"; depends=[httr RCurl]; }; - attachment = derive2 { name="attachment"; version="0.2.1"; sha256="085q928kchascq3i5csw2kp1gqcqlw14gaamrv2rpn30fq1fb82f"; depends=[desc glue knitr magrittr rmarkdown roxygen2 stringr]; }; + attachment = derive2 { name="attachment"; version="0.2.3"; sha256="00asswxj37gj635ninkdqm70ks7ydkiqm7fffbk2hm2qjs0wsxb1"; depends=[desc glue knitr magrittr rmarkdown roxygen2 stringr]; }; attempt = derive2 { name="attempt"; version="0.3.1"; sha256="1ylgg7jcp8wqmxgf1mydnvh26k0mr8jyjla4hw06730r40yrs58m"; depends=[rlang]; }; attenuation = derive2 { name="attenuation"; version="1.0.0"; sha256="0ys4psvkvimmym4qj9cmhq8y7x10kv0x6bsvpjkrsc3l8p2g3474"; depends=[]; }; attrib = derive2 { name="attrib"; version="2021.1.2"; sha256="17s3hjp8zdl28y4h9iv854y1hli5yg1h0kqhj8v5hms1lhx7c1qq"; depends=[arm data_table dlnm ggplot2 glue lme4 lubridate magrittr mvmeta pbs progress stringr tibble tsModel]; }; @@ -6080,7 +6092,7 @@ in with self; { autocart = derive2 { name="autocart"; version="1.4.5"; sha256="1zgcmrm4dkdnr130hwwka2nwdczgvc3jc9hxrb6nfs8ijb24gl36"; depends=[fields mgcv Rcpp RcppArmadillo RcppParallel]; }; autocogs = derive2 { name="autocogs"; version="0.1.4"; sha256="0v27l9a0ysj7x9wjka1jl1bq9rmxmzldclcp1w59a6807wjlszhx"; depends=[broom checkmate diptest dplyr ggplot2 hexbin MASS mclust moments progress tibble]; }; autoencoder = derive2 { name="autoencoder"; version="1.1"; sha256="0ly1aanayk28nx6yqfhl7d0zm4vg6rfjikf5ibn8zhmkrfyflj1y"; depends=[]; }; - autoharp = derive2 { name="autoharp"; version="0.0.8"; sha256="1g6s7ljscdb4gmk1vf6sqwkdg1asm36wcjwy9k85a5gzbh2lrkq2"; depends=[dplyr igraph knitr lintr magrittr pryr rlang rmarkdown shiny stringr tibble tidyr]; }; + autoharp = derive2 { name="autoharp"; version="0.0.10"; sha256="0jn7nya4lb1pvdy7yyimxga4gn042jqwl3w82m6c244kqydm5fi0"; depends=[dplyr igraph knitr lintr magrittr pryr rlang rmarkdown shiny stringr tibble tidyr]; }; autohd = derive2 { name="autohd"; version="0.1.0"; sha256="14wyiqhmbp8v52s1p5svvcjpwg8pwqrqh3zzm17blcl2hr4p9cy8"; depends=[broom coxme hdbm Hmisc ICBayes icenReg missForest mlr3 Rdpack rjags schoolmath survival SurvRegCensCov tibble usethis]; }; autoimage = derive2 { name="autoimage"; version="2.2.3"; sha256="1jhkd7mbig6wpyc69iynfrj5i62lrwcwqbgjkmq8b9p5raglm1g2"; depends=[colorspace fields ggplot2 mapproj maps MBA]; }; autokeras = derive2 { name="autokeras"; version="1.0.12"; sha256="0wyqz40fc277z1q1zxdmmjzksnmlh58r27a6hx08h6hmzvng5avy"; depends=[keras reticulate]; }; @@ -6091,7 +6103,7 @@ in with self; { autoplotly = derive2 { name="autoplotly"; version="0.1.4"; sha256="1z577jvadgiz028z7x0786d3qhlkrvv9i34xmllizvg94kxv3bl1"; depends=[ggfortify ggplot2 plotly]; }; autoshiny = derive2 { name="autoshiny"; version="0.0.2"; sha256="0s06ynnirgsh19x8qq4020piirkhvjqpvz372syygvlal062y6cn"; depends=[shiny]; }; autostats = derive2 { name="autostats"; version="0.1.0"; sha256="0yia8hli3d8pafr82a8syzq35jq2jdjsl4w7dahnfaq6bjzkdzx2"; depends=[BBmisc broom broom_mixed Ckmeans_1d_dp dials dplyr flextable framecleaner ggeasy ggplot2 ggstance ggthemes glmnet gtools janitor jtools lubridate magrittr Matrix nnet parsnip party patchwork presenter purrr readr recipes rlang rlist rsample stringr tibble tidyr tidyselect tune workflows xgboost yardstick]; }; - autostsm = derive2 { name="autostsm"; version="1.6"; sha256="086ndq164bbp7fczzwdx3ryva3qc2hnswm7mlig2jmn0w01ivwr0"; depends=[data_table doSNOW foreach forecast ggplot2 ggrepel gridExtra lmtest lubridate maxLik progress Rcpp RcppArmadillo sandwich strucchange zoo]; }; + autostsm = derive2 { name="autostsm"; version="2.0"; sha256="0xqvisad2rl4cjdijnjk3qvl52rrz7ddvykwpqxy185nl3iblpk7"; depends=[data_table doSNOW foreach forecast ggplot2 ggrepel gridExtra lmtest lubridate maxLik progress Rcpp RcppArmadillo sandwich strucchange]; }; autothresholdr = derive2 { name="autothresholdr"; version="1.3.11"; sha256="1w0lxi9bbnffx0gjmll98ki4zh7i6v8wbjd0ziwzca1qwq3z4a9i"; depends=[checkmate ijtiff magrittr purrr Rcpp rlang strex stringr]; }; av = derive2 { name="av"; version="0.6.0"; sha256="0g6815y24h4la714a5bkj7nj4n39jycfynkli6y3jlijql96j2il"; depends=[]; }; available = derive2 { name="available"; version="1.0.4"; sha256="18dqm10dicbvjd5wli4nkv4fip0fgh2b9h9gm5511ayfsdg8lc8l"; depends=[cli clisymbols crayon desc glue jsonlite memoise SnowballC stringdist tibble tidytext udapi yesno]; }; @@ -6118,6 +6130,7 @@ in with self; { azuremlsdk = derive2 { name="azuremlsdk"; version="1.10.0"; sha256="0s64kjrmcdnjdwh5mdm5vxgvrl9ghvfv6bair7qfzz32jlab99m0"; depends=[DT ggplot2 htmltools plyr reticulate rstudioapi servr shiny shinycssloaders]; }; b6e6rl = derive2 { name="b6e6rl"; version="1.1"; sha256="17scdskn677vaxx1h2jypqaffvjgczryplg17nr3wigi1x0cxg7a"; depends=[]; }; bPeaks = derive2 { name="bPeaks"; version="1.2"; sha256="1z6jghcmw0lwv17ms7gdp5zzimaawq3ahbwkxa4062g373592smd"; depends=[]; }; + bRacatus = derive2 { name="bRacatus"; version="1.0.6"; sha256="139in6322ghw5gb6czvkm1i9cjm9rharpbdhawhflsqz8mlb6pvr"; depends=[data_table geojsonio jsonlite maptools plotfunctions raster rgbif rgdal rgeos rworldmap sp]; }; bReeze = derive2 { name="bReeze"; version="0.4-3"; sha256="17nc6qvw9l6sq8knd1mk193md2y3z1jlcjymqzl389yxj8s0i2il"; depends=[lubridate]; }; bSims = derive2 { name="bSims"; version="0.3-0"; sha256="055hqa5w4gaqz9mms9yj85wg0pgl6xa568nbjxm4qc75rsy91qg5"; depends=[deldir intrval MASS mefa4 pbapply]; }; bWGR = derive2 { name="bWGR"; version="1.6.6"; sha256="1m5spafvl5pn0s60vaf8wz7iaibsa7laq7kp8y9xj20pp3f76hvr"; depends=[Rcpp]; }; @@ -6128,7 +6141,7 @@ in with self; { babelgene = derive2 { name="babelgene"; version="21.4"; sha256="1gk5pm3b3shr1id66a11ywc1b823gbj8yckg24szzfhj8g4ixyf0"; depends=[dplyr rlang]; }; babelwhale = derive2 { name="babelwhale"; version="1.0.3"; sha256="0ph825dwvr48fhamy1l5564linz7cj7b9sj511as77f1yqycv4a2"; depends=[crayon dplyr dynutils processx purrr]; }; babette = derive2 { name="babette"; version="2.3"; sha256="00l04pwv3sizi4daasai3pszp3spzsyj85g4dj9wqpiv51zcpj9a"; depends=[beastier beautier mauricer phangorn remotes stringr testit tracerer xml2]; }; - babsim_hospital = derive2 { name="babsim.hospital"; version="11.8.2"; sha256="16gx30c1a2pyj6ndfvl7wn1lj1n69j4k5klrqdh50zapmzbrxjkg"; depends=[checkmate curl data_table dplyr ggplot2 golem igraph lubridate markovchain padr plyr rvest scales simmer slider SPOT testthat xml2]; }; + babsim_hospital = derive2 { name="babsim.hospital"; version="11.8.4"; sha256="0c66w90ndzmnzahv0krzw8qlqdip3821v74v7h5264cg8fgiflc6"; depends=[checkmate curl data_table dplyr ggplot2 golem igraph lubridate markovchain padr plyr rvest scales simmer slider SPOT testthat xml2]; }; babynames = derive2 { name="babynames"; version="1.0.1"; sha256="1gcpd6lncqwjz05z98ra6hcc8q966l2594ylkg50avndild89n3h"; depends=[tibble]; }; bacistool = derive2 { name="bacistool"; version="1.0.0"; sha256="1hby2bmxbc8qgjzgkp2flv89lpzzvg3vr7s98989ayjmv4vgmqaf"; depends=[rjags]; }; backShift = derive2 { name="backShift"; version="0.1.4.3"; sha256="1dhmq51w07vcqlngsb04ip0wqbgqq2xdfdm1w82r082f07ywqb16"; depends=[clue ggplot2 igraph MASS matrixcalc reshape2]; }; @@ -6174,7 +6187,7 @@ in with self; { basecamb = derive2 { name="basecamb"; version="1.0.4"; sha256="02sak07dfiiwn55fnv9b48gm2y25kqg6xrlj5zipapg3nffdgyxi"; depends=[assertive_types assertthat dplyr Hmisc mice purrr]; }; basedosdados = derive2 { name="basedosdados"; version="0.1.0"; sha256="0igk1mdq1ibv3r5cfyd976vn2rylcz45ghl8z1hgkqbhp8b0wav3"; depends=[bigrquery cli DBI dbplyr dotenv dplyr fs glue googleAuthR httr magrittr purrr readr rlang scales stringr tibble writexl]; }; baseflow = derive2 { name="baseflow"; version="0.13.2"; sha256="02ygx32dfszk66f33wfszkvwi51v8zw2s45y9nlrgfws9rlpzll2"; depends=[airGR]; }; - basefun = derive2 { name="basefun"; version="1.1-0"; sha256="17lrqi317hr21hirxxx931sfzqr19dadlb7jz16njsag1sjzmasv"; depends=[Matrix orthopolynom polynom variables]; }; + basefun = derive2 { name="basefun"; version="1.1-1"; sha256="1bn32bxk36h4xy7q1wq522cw7dd1b4zixzzp04fsg2w692044vkh"; depends=[Matrix orthopolynom polynom variables]; }; baseline = derive2 { name="baseline"; version="1.3-1"; sha256="1spmp8z0hrb6db0r52i16524cp9zy1d1hr4y3b3i9q38m1iskpms"; depends=[limSolve SparseM]; }; basemaps = derive2 { name="basemaps"; version="0.0.1"; sha256="15fgk5x9n8nfmhclydwaypzqv5dl6s1r9v40ahdnpc50y5p8zjay"; depends=[curl httr magick pbapply raster sf slippymath stars]; }; basetheme = derive2 { name="basetheme"; version="0.1.2"; sha256="0yck4qc7qd406s7kw95xgnfc0pfvzk3ylhkv6mk6l2wbkfm8ldrb"; depends=[]; }; @@ -6364,6 +6377,7 @@ in with self; { biClassify = derive2 { name="biClassify"; version="1.2"; sha256="05w22cv8w733xp79ciywih5cbv3fl6kzkbwwmrf44l1vdcnv3dsn"; depends=[DAAG expm fields MASS Matrix mvtnorm Rcpp RcppArmadillo]; }; biasbetareg = derive2 { name="biasbetareg"; version="1.0"; sha256="1562zdin0y5mrp36ih11ir3h9cv49cx1l98chxd89fkj8x3c1fbg"; depends=[betareg]; }; bib2df = derive2 { name="bib2df"; version="1.1.1"; sha256="0d57883df774qqwpssmly3f1gci32yc5sgwc3x8f2rjih23s1nf6"; depends=[dplyr httr humaniformat stringr]; }; + biblio = derive2 { name="biblio"; version="0.0.4"; sha256="03kwbv1pk29jhx27924fhlqa2dwl9w62x40pngs7ib86lr4bbwgy"; depends=[stringr yamlme]; }; bibliometrix = derive2 { name="bibliometrix"; version="3.1.4"; sha256="14s1mn0j9120m1nh46380qbffy6d4zcx9ii3axbcwmhry0yr2ndw"; depends=[bibliometrixData dimensionsR dplyr DT factoextra FactoMineR forcats ggplot2 ggrepel igraph Matrix openxlsx plotly pubmedR RColorBrewer readr readxl rscopus shiny SnowballC stringdist stringr tidyr tidytext]; }; bibliometrixData = derive2 { name="bibliometrixData"; version="0.1.0"; sha256="0fdfgqsfiq3iacj4vb3bvx98waqzqxdsn2ds8wq86a30lm055d7n"; depends=[]; }; biblionetwork = derive2 { name="biblionetwork"; version="0.1.0"; sha256="0nhx9bk7r5l0bvj98clnmwf53ihghf48zai4nj6pcgr2rb69fvjj"; depends=[data_table Rdpack]; }; @@ -6376,6 +6390,7 @@ in with self; { bifurcatingr = derive2 { name="bifurcatingr"; version="1.0.0"; sha256="0msbdr2m4xmvnd00yklk2b8c8qwr11d5gc1x22sqd16fgj9y0qvf"; depends=[igraph MASS]; }; bigGP = derive2 { name="bigGP"; version="0.1-7"; sha256="0slg87g6lrdlzlcqxmcyxcwzrnmiz6ps0n14p27zcv0n687xifid"; depends=[Rmpi]; }; bigMap = derive2 { name="bigMap"; version="2.3.1"; sha256="08c9s5sk672j70d6pnva7z52i4s3knkby06lva9al9n8a3jiwsvz"; depends=[BH bigmemory colorspace RColorBrewer Rcpp RcppArmadillo]; }; + bigQF = derive2 { name="bigQF"; version="1.5"; sha256="118qijc2088lqmkz87f6p97a74in2132kmcfvrldwzh6kwf301dj"; depends=[CompQuadForm coxme Matrix svd]; }; bigQueryR = derive2 { name="bigQueryR"; version="0.5.0"; sha256="051c8rkj77dm78237dzhf3lcdawv0xv72pwfiim9bi89z9mp6f9m"; depends=[assertthat googleAuthR googleCloudStorageR httr jsonlite]; }; bigReg = derive2 { name="bigReg"; version="0.1.2"; sha256="1hmvh5j40zpzz6c88hmikphps8rb741yvkg60dxmkfl8gxqsrp3w"; depends=[MASS Rcpp RcppArmadillo uuid]; }; bigSurvSGD = derive2 { name="bigSurvSGD"; version="0.0.1"; sha256="08i6hwfr4rpvmxfa0vx8bi2dsa63iasj049ndwfn6zgvai6qaz0s"; depends=[bigmemory doParallel foreach Rcpp survival]; }; @@ -6529,7 +6544,7 @@ in with self; { blockmodels = derive2 { name="blockmodels"; version="1.1.4"; sha256="1kx6ryx0ma7j70nzby0wdagqkf1cjdhvw32rf7i1pp8f2rkfsg84"; depends=[digest Rcpp RcppArmadillo]; }; blockrand = derive2 { name="blockrand"; version="1.5"; sha256="0bic3b8l7mp2hpwd8k1diwy6a4lj92i7s5k20i2wy8kw0c74jwfh"; depends=[]; }; blocksdesign = derive2 { name="blocksdesign"; version="4.9"; sha256="1kr3fxs8vgc96clhx5ml11jkwll1rg9gf16xg93q14jpg4hg0j9h"; depends=[plyr PolynomF]; }; - blogdown = derive2 { name="blogdown"; version="1.5"; sha256="08h4zsrw12xkllyx3czmpxjy1dnqr6vrk410zp7m75xzsbq5kg5q"; depends=[bookdown htmltools httpuv jsonlite knitr later rmarkdown servr xfun yaml]; }; + blogdown = derive2 { name="blogdown"; version="1.6"; sha256="0xlx5d3hmsx1v4n75g3xfi9i6npsw4gfqzm5h97vafgnjpf35g3g"; depends=[bookdown htmltools httpuv jsonlite knitr later rmarkdown servr xfun yaml]; }; blorr = derive2 { name="blorr"; version="0.3.0"; sha256="1ynvg6ar7c7p01225q9czy4gxks0p1vw3sx207l7vzqxw20wb1bn"; depends=[car data_table ggplot2 gridExtra lest Rcpp]; }; blrm = derive2 { name="blrm"; version="1.0-1"; sha256="0p0nmbxil4l89fcryrgsg9mxzb5fyg93p50aqkjy00ms05hwd0hx"; depends=[boot mvtnorm openxlsx reshape2 rjags]; }; blsR = derive2 { name="blsR"; version="0.2.1"; sha256="0wbcpvgj72fkhv4z1gllf9lkq45mdwwnf8dnmaqwl9i5qnihy1yy"; depends=[dplyr httr jsonlite purrr rlang]; }; @@ -6580,7 +6595,7 @@ in with self; { bootPLS = derive2 { name="bootPLS"; version="0.9.9"; sha256="1i0bzykwjimyswb0z23sqbhm98b9lxifnkby682khva7yfk7k8qr"; depends=[bipartite boot doParallel foreach mvtnorm pls plsRglm spls]; }; bootSVD = derive2 { name="bootSVD"; version="1.1"; sha256="16d3qv8vzhfvl9vbfglkb3csmc4npb29jcq9apv89hj7bkcapvi9"; depends=[ff]; }; bootStepAIC = derive2 { name="bootStepAIC"; version="1.2-0"; sha256="0p6v4zjsaj1p6c678010fazdh40lpv0rvhczd1halj8aic98avdx"; depends=[MASS]; }; - bootUR = derive2 { name="bootUR"; version="0.3.0"; sha256="12r2kfr4nwlc734vbx793vx4qhg8hiv3s99hj8k6h0b0fvj1w911"; depends=[Rcpp RcppArmadillo RcppProgress urca]; }; + bootUR = derive2 { name="bootUR"; version="0.4.1"; sha256="0h5k73i5ps9sn81lm1kmyz3by6jjqm8zpbbli1h8vkkx49ybg4nq"; depends=[parallelly Rcpp RcppArmadillo RcppParallel RcppThread urca]; }; bootcluster = derive2 { name="bootcluster"; version="0.2.5"; sha256="0jhq0f8a3lajhqksvxd3k703b50vzll43q9w4iaqv4ylsg9l6pyr"; depends=[cluster doParallel dplyr flexclust foreach fpc GGally ggplot2 gridExtra igraph intergraph mclust network plyr sna]; }; bootf2 = derive2 { name="bootf2"; version="0.4.1"; sha256="17wrl678x9mb5pny2vwrr6sdl2hsqr1nbjzsizp2q6l3w5m6s152"; depends=[ggplot2 MASS minpack_lm readxl]; }; bootnet = derive2 { name="bootnet"; version="1.5"; sha256="13pfmr259yikkb3y9438xz4bjn6kx5w5d2jhx441a00rvv1kb3hi"; depends=[abind corpcor dplyr ggplot2 gtools igraph IsingFit IsingSampler Matrix mgm mvtnorm NetworkToolbox networktools pbapply qgraph rlang snow tibble tidyr]; }; @@ -6623,7 +6638,7 @@ in with self; { brainR = derive2 { name="brainR"; version="1.6.0"; sha256="1l5rm6grslc6mivwh2fv3pznhy2cw16fz5695pmyfamzvsjggir1"; depends=[misc3d oro_nifti rgl]; }; brandwatchR = derive2 { name="brandwatchR"; version="0.3.0"; sha256="10bccsaswsq06wdrxqg71amzx5rabmgfi4n074y651r2c1pyy98w"; depends=[data_table httr jsonlite]; }; brant = derive2 { name="brant"; version="0.3-0"; sha256="0rcp0am4wjlkinvmv0n5bky84v31ds28v163p5mlp343cgma2b62"; depends=[MASS Matrix]; }; - bravo = derive2 { name="bravo"; version="2.1.1"; sha256="1ikfby3sbkbzk34kc2nsbxyqfdl9qw182rf9zj5zk6yi8s4zsbsq"; depends=[Matrix Rcpp]; }; + bravo = derive2 { name="bravo"; version="2.1.2"; sha256="0gs8vplb3sfp82bldbq1glqhr6j2p4pbzxfbhy61sjs88kvh0bp2"; depends=[Matrix Rcpp]; }; brea = derive2 { name="brea"; version="0.2.0"; sha256="0mb043fdhxrg9gyf4g55ydjx37j20394nvd4d0fmiym98lccyi04"; depends=[]; }; breakDown = derive2 { name="breakDown"; version="0.2.1"; sha256="1jm9zmyfcnr9mjz7b30k34h47msvik9ngfysi6dc48gvrk41yk9q"; depends=[ggplot2]; }; breakage = derive2 { name="breakage"; version="1.1-1"; sha256="0zjazyz92criiimpz4wyd4hd8ccspvh3hhqpd4qkfdzdf9wp3kns"; depends=[Imap]; }; @@ -6648,7 +6663,7 @@ in with self; { brm = derive2 { name="brm"; version="1.1.1"; sha256="0kyr8mxz5g3w41kp08d47f29cff8fqrfbm1ri7hgfg2lgr1151xy"; depends=[]; }; brms = derive2 { name="brms"; version="2.16.1"; sha256="1i0vkkfziac29vncw4igja5m7a6rhw9rqwifrw3y47q6zgczp7kl"; depends=[abind backports bayesplot bridgesampling coda future ggplot2 glue loo Matrix matrixStats mgcv nleqslv nlme posterior projpred Rcpp rstan rstantools shinystan]; }; brnn = derive2 { name="brnn"; version="0.9"; sha256="0gyjvrakwd6nbgv94hbxvynsl52w0zswzp8fxl88rppycpgn81j6"; depends=[Formula truncnorm]; }; - brokenstick = derive2 { name="brokenstick"; version="1.1.0"; sha256="02n8fv84cfj32mg08ylpg19alf69kkpknpvd6mx86lclhaqa3cnf"; depends=[dplyr lme4 matrixsampling rlang tidyr]; }; + brokenstick = derive2 { name="brokenstick"; version="2.0.0"; sha256="0si4chi6fcp6n8wwvx6mrj9xlrldwhvcrx1kv7xbfd0p7kaz89qh"; depends=[coda dplyr lme4 matrixsampling rlang tidyr]; }; brolgar = derive2 { name="brolgar"; version="0.1.2"; sha256="0xhv76z75zsrvcy606cv8qvz14w5g02gcs2744kv1kflaaics7dx"; depends=[dplyr fabletools ggplot2 glue magrittr purrr rlang tibble tidyr tsibble vctrs]; }; broman = derive2 { name="broman"; version="0.76"; sha256="1yjalfrfy1hvrcs3ky452mdg2ss8ikascj9yngp5fnfrrljcg9wg"; depends=[ggplot2]; }; broom = derive2 { name="broom"; version="0.7.10"; sha256="0ks64xwkaqh5cinq8j56d89rn9kipm7cdipsgqmz9xxy7ajxb7qj"; depends=[backports dplyr ellipsis generics ggplot2 glue purrr rlang stringr tibble tidyr]; }; @@ -6777,7 +6792,7 @@ in with self; { captr = derive2 { name="captr"; version="0.3.0"; sha256="13j2nq9hm37g4h5fjdpz7kix0sqajdd7zssjfgil06ixfmnsijkx"; depends=[curl jsonlite]; }; capushe = derive2 { name="capushe"; version="1.1.1"; sha256="1aa76ir1kp67hiz7dr60azyc71yzslshyc640fjh0fpw0sp5kwbc"; depends=[MASS]; }; capwire = derive2 { name="capwire"; version="1.1.4"; sha256="18a3dnbgr55yjdk6pd7agmb48lsiqjpd7fm64dr1si6rpgpl4i9c"; depends=[]; }; - car = derive2 { name="car"; version="3.0-11"; sha256="0b2l35656bi75hfvnjhzhlnrnbpjn0vv7nvny8gn65gm0rr94b5k"; depends=[abind carData lme4 maptools MASS mgcv nlme nnet pbkrtest quantreg rio]; }; + car = derive2 { name="car"; version="3.0-12"; sha256="00kk8l71508f73kyn21is1mx6kjbrzdq3ls94c5ajhiqmvpsd6dq"; depends=[abind carData lme4 maptools MASS mgcv nlme nnet pbkrtest quantreg]; }; carData = derive2 { name="carData"; version="3.0-4"; sha256="09270j39n4jpswxqps20b12zaj8dz4rrqpk2l2j5bnf1xzizb9nd"; depends=[]; }; carSurv = derive2 { name="carSurv"; version="1.0.0"; sha256="0wv7lp10i4sdfqyizg77ghblp3pcp7wzhs946sm0wl6w00krav9j"; depends=[corpcor fdrtool mboost Rcpp survival]; }; caracas = derive2 { name="caracas"; version="1.1.1"; sha256="0s97if3sgsji9qah66ha328lvsjgpdyw6wvkgmfcy5r4974qfi71"; depends=[magrittr reticulate]; }; @@ -6935,7 +6950,7 @@ in with self; { cfda = derive2 { name="cfda"; version="0.9.9"; sha256="07k531vp2chsrkw5d0iws3jg23yz0gni0bjn03kr6irw89r4py9p"; depends=[diagram fda ggplot2 mgcv msm pbapply]; }; cfdecomp = derive2 { name="cfdecomp"; version="0.4.0"; sha256="0g61gpihk5kbbrqzn15fqjv3bawsq1vq3sdssbzs5j96afmf2aq8"; depends=[]; }; cffdrs = derive2 { name="cffdrs"; version="1.8.18"; sha256="15bl1sfm2yz897b5w0x0kvyf2z3rx32n436gsnsx5gd32v5v18w1"; depends=[data_table doParallel foreach geosphere raster rgdal]; }; - cffr = derive2 { name="cffr"; version="0.1.0"; sha256="00fzfji73hjipi79h2vz88whqs8p4ip5cld0vvv40d5sfgmkw9ml"; depends=[crayon desc jsonlite jsonvalidate yaml]; }; + cffr = derive2 { name="cffr"; version="0.1.1"; sha256="1x902fdrw0azcsryjxkwkv7b0cjc9nw781mamf7w4agq7nqhv2cy"; depends=[crayon desc jsonlite jsonvalidate yaml]; }; cfid = derive2 { name="cfid"; version="0.1.2"; sha256="0hy2vq3izj4938sgzmgpp4m9d49hpiqh9jd1wjf5g54x3v1yzy89"; depends=[]; }; cfma = derive2 { name="cfma"; version="1.0"; sha256="006z5g3rqpg44jqdf6ivyxr47sxm5cd9cqhayfi8qk73xx5w4lv9"; depends=[]; }; cfmortality = derive2 { name="cfmortality"; version="0.3.0"; sha256="0dgwv89fzylznc6jr41ixzfs1gfs3np4gf46bk6pcd09l1kbx3lc"; depends=[]; }; @@ -6989,6 +7004,7 @@ in with self; { chest = derive2 { name="chest"; version="0.3.5"; sha256="0jmihq8p6gxyxgmpdgwmnhl98s38pqzdzdqzqiy54zyqgd69plh8"; depends=[broom dplyr forestplot generics ggplot2 MASS speedglm survival tibble]; }; chi = derive2 { name="chi"; version="0.1"; sha256="1y91mwahj4j2wz0y5k5vdpq7ygq834h8jkn37n74lqnwvv1968rr"; depends=[]; }; chi2x3way = derive2 { name="chi2x3way"; version="1.1"; sha256="13qc8sigiw4gcxk8y50q7yfgzbssjyl41fizzjqzcp3p14kpsmzw"; depends=[]; }; + chicane = derive2 { name="chicane"; version="0.1.8"; sha256="0963r5jzyjihidh18ny9nqkim00bys3psdgrxhbah43bbl0kx43r"; depends=[bedr data_table doParallel foreach gamlss gamlss_tr iterators knitr MASS rmarkdown]; }; chickn = derive2 { name="chickn"; version="1.2.3"; sha256="1d3xl2pigan6vb29nk2ks04dsl5vy16cv9z7miskmhcqcx2wm1qb"; depends=[bigstatsr doParallel doRNG foreach MASS mvnfast nloptr pracma Rcpp RcppArmadillo RcppParallel Rdpack rmio zipfR]; }; childdevdata = derive2 { name="childdevdata"; version="1.1.0"; sha256="016x6xhqq1mfqlj9m5qv63k639xnqnrf5h6rdcyaa8sxn7nv34zm"; depends=[]; }; childesr = derive2 { name="childesr"; version="0.2.2"; sha256="1r4s6klwpdx1w17b611lqf6q9wpqknvqc6890jfav740dg8icl9z"; depends=[DBI dbplyr dplyr jsonlite magrittr purrr RMySQL]; }; @@ -7156,19 +7172,19 @@ in with self; { clusternomics = derive2 { name="clusternomics"; version="0.1.1"; sha256="05nkw6h2dvky07fj50myzw5xlkqyiflbn4vwqw8a1q2idv4awi7b"; depends=[magrittr MASS plyr]; }; clustertend = derive2 { name="clustertend"; version="1.5"; sha256="194acf2pd71jxyyjj7ri9mpnx094zziwmq6w9lfclifrnkqv6ra9"; depends=[]; }; clustrd = derive2 { name="clustrd"; version="1.3.7-2"; sha256="0j0nmqc9q9djg824g89z27xizdy1jdsygz1gc0r0mrzdd3dyk2ya"; depends=[ca cluster corpcor dplyr fpc GGally ggplot2 ggrepel plyr rARPACK tibble]; }; - clustree = derive2 { name="clustree"; version="0.4.3"; sha256="0lxydy2f83qqd5dhlp2l546jax759l43b29j6g82079yzg1szwsz"; depends=[checkmate dplyr ggplot2 ggraph ggrepel igraph rlang tidygraph viridis]; }; + clustree = derive2 { name="clustree"; version="0.4.4"; sha256="0vwmicajl7c0rmjdmf4f857fii0xrxz25vjkn888svlsikw00qbs"; depends=[checkmate dplyr ggplot2 ggraph ggrepel igraph rlang tidygraph viridis]; }; clustringr = derive2 { name="clustringr"; version="1.0"; sha256="07f0ywpkf8igic7ijvvrjlngq3smjcv9nqnah41fp6wfgvh49ifq"; depends=[assertthat dplyr forcats ggplot2 ggraph igraph magrittr rlang stringdist stringi stringr tidygraph]; }; clustsig = derive2 { name="clustsig"; version="1.1"; sha256="0n5nf712vsa8zb0c2lv4gjqsgva62678vjngr9idgswb73shxm8v"; depends=[]; }; clustvarsel = derive2 { name="clustvarsel"; version="2.3.4"; sha256="0hzvfcjs1k13j695jx6m0fgmcxy284gp4d59b7zmnvqib153x89x"; depends=[BMA foreach iterators Matrix mclust]; }; clv = derive2 { name="clv"; version="0.3-2.2"; sha256="072jn3xh6ii7vfp0gx03k1hiafnla1lkyn5hpj17nmqc0jvzp683"; depends=[class cluster]; }; cmR = derive2 { name="cmR"; version="1.0.3"; sha256="0ml7ip9zxljpgzksbxd15q890q062nf0q81d272dhiizxvr4a0cn"; depends=[fields Matrix]; }; - cmaRs = derive2 { name="cmaRs"; version="0.1.0"; sha256="08fq9qfgx812d5m0m4amq2k0w5w2cbv7ljpfgjwdqhshix3dxvis"; depends=[AUC earth Matrix Rmosek Ryacas0 stringr]; }; + cmaRs = derive2 { name="cmaRs"; version="0.1.1"; sha256="0y9p1r58q45adsb60fvdvqn6m0a6ad32vl15fsy9l83r7aimcwci"; depends=[AUC earth Matrix Rmosek Ryacas0 stringr]; }; cmaes = derive2 { name="cmaes"; version="1.0-11"; sha256="1hwf49d1m660jdngqak9pqasysmpc4jcgr8m04szwbyzyy6xrm5k"; depends=[]; }; cmaesr = derive2 { name="cmaesr"; version="1.0.3"; sha256="03zx2nrw24wmmjjpyh8pswasjjq0amf0g375fm2b3s111dx8fbj9"; depends=[BBmisc checkmate ggplot2 ParamHelpers smoof]; }; cmce = derive2 { name="cmce"; version="0.1.0"; sha256="0d52ci906zbd4q43qylcyw93acxh7f20jn3r0k74ynyy47131dnd"; depends=[]; }; cmdfun = derive2 { name="cmdfun"; version="1.0.2"; sha256="1pbcq7hi2lcmqnghmy3q2fsk0c9fy5m0637acyzmc096fxbx723j"; depends=[magrittr purrr R_utils rlang testthat usethis]; }; cmenet = derive2 { name="cmenet"; version="0.1.1"; sha256="0f7bci6nn63q243i7wvhr9mqlf64gw8w042nc1lqb986p7zfxihk"; depends=[glmnet hierNet MASS Rcpp RcppArmadillo sparsenet]; }; - cmfrec = derive2 { name="cmfrec"; version="3.2.2-1"; sha256="1vsjgxlh31ja2hy2ji0dhng7ml1zns4n517vy4bw628f9hnxysgv"; depends=[]; }; + cmfrec = derive2 { name="cmfrec"; version="3.2.2-2"; sha256="0s75scl7jr7ginsi3fpvip919kd1zwchp5gj9x87qgw5zimqyjkp"; depends=[]; }; cmm = derive2 { name="cmm"; version="0.12"; sha256="0q6hs56hhi9vaanx7i7gg7ncv0h29lndla66g9chzmh3lchq3r20"; depends=[]; }; cmmr = derive2 { name="cmmr"; version="0.1.2"; sha256="0nik1pzd1rckalvn7xh6s699kkdjnra3q3bn5x16c1lmpz5bp2s4"; depends=[httr progress RJSONIO]; }; cmna = derive2 { name="cmna"; version="1.0.5"; sha256="161qc7q88ajm3l62bq03lpf35bdii1w1d111085zvs3hrf09iybw"; depends=[]; }; @@ -7368,7 +7384,7 @@ in with self; { conmet = derive2 { name="conmet"; version="0.1.0"; sha256="0iwr8mmh9lk0psqxkgnd7ldhg57ivbkv0b3a18gli06983mhzjdc"; depends=[dplyr DT foreign Hmisc lavaan openxlsx purrr semTools shiny shinydashboard shinyWidgets stringr summarytools waiter]; }; connectwidgets = derive2 { name="connectwidgets"; version="0.1.1"; sha256="0sj8nik6dyyzflpq9vqd8wzlhky6jl2wfiaz788i6a2wdhckyc1m"; depends=[bslib crosstalk digest dplyr glue htmltools htmlwidgets httr jsonlite magrittr purrr R6 reactable reactR rlang sass tibble]; }; conogive = derive2 { name="conogive"; version="1.0.0"; sha256="0a8v7v0fds0psfnbx9x45way8z1f1xn2ncgbrn5rb6fjq0a1zs4x"; depends=[assertthat checkmate mvtnorm psych]; }; - conos = derive2 { name="conos"; version="1.4.3"; sha256="15gbaa2lq256fgd4wgvf6hkv0k9w45764kya55hcr1z6wqx53i7z"; depends=[abind ComplexHeatmap cowplot dendextend dplyr ggplot2 ggrepel gridExtra igraph irlba leidenAlg magrittr Matrix Matrix_utils N2R R6 Rcpp RcppArmadillo RcppEigen RcppProgress reshape2 rlang Rtsne sccore]; }; + conos = derive2 { name="conos"; version="1.4.4"; sha256="0rfsm7w7dz3dygmqih6qw6dhyg7c58yxpsnq59pb48zfvyzwcq2y"; depends=[abind ComplexHeatmap cowplot dendextend dplyr ggplot2 ggrepel gridExtra igraph irlba leidenAlg magrittr Matrix Matrix_utils N2R R6 Rcpp RcppArmadillo RcppEigen RcppProgress reshape2 rlang Rtsne sccore]; }; conover_test = derive2 { name="conover.test"; version="1.1.5"; sha256="0f1p10klidk1xic1wd48j9rjh2fb3z6pfjx4y021lglx1w3av68k"; depends=[]; }; conquer = derive2 { name="conquer"; version="1.2.1"; sha256="0i9g27f52zl2kb2392g0y614drf6s87dqz12aphj889ajq7zjm0k"; depends=[caret Matrix matrixStats Rcpp RcppArmadillo]; }; conquestr = derive2 { name="conquestr"; version="0.8.5"; sha256="1xh09a379g1msib5fvf72llvf2gwqb7ciacw7j7iqrkb2ddpaglk"; depends=[ggplot2 ggrepel Rcpp reshape rlang stringr]; }; @@ -7381,8 +7397,8 @@ in with self; { contTimeCausal = derive2 { name="contTimeCausal"; version="1.0"; sha256="1lyiy0hs5xms6hgr7cv5cxh7v09612qsknjwmrr8w07y0h37qg5l"; depends=[dplyr survival zoo]; }; contact = derive2 { name="contact"; version="1.2.8"; sha256="1db3vgjlz0ivw3sx37mwy7ngjx0in3rxlm3i3akh4xzbfp9gjj87"; depends=[ape data_table doParallel foreach igraph lubridate raster rgdal rgeos sp]; }; contactdata = derive2 { name="contactdata"; version="0.2.0"; sha256="1hcibqkfisv28d38ymgvmkkbs4jl3lbp2safyd5abf185043263d"; depends=[]; }; - container = derive2 { name="container"; version="0.3.0"; sha256="128fj97mx52kap299fmhn3whnaismsd4cq3zqpbfvwxx2ii4fd33"; depends=[R6]; }; - contentid = derive2 { name="contentid"; version="0.0.12"; sha256="115g4l40wb1rnc5vbw6fsap7d291f4ycr30viz9qsfw92zna8vmd"; depends=[curl fs httr openssl]; }; + container = derive2 { name="container"; version="1.0.0"; sha256="0yr06z6vdz1qz7vp3hf1zqnk0n2g77iaq9nfx6r9275m5v2hl6iw"; depends=[data_table R6]; }; + contentid = derive2 { name="contentid"; version="0.0.14"; sha256="1h31wnwmpira809dvbcsgnm3mgn2l3j58hr623ksv5wnxi256nv3"; depends=[curl fs httr openssl]; }; contfrac = derive2 { name="contfrac"; version="1.1-12"; sha256="0sq5c7ny235yrkv2xc4insgxby6rvzc1qsj8h301cd2if3lwbgwm"; depends=[]; }; conting = derive2 { name="conting"; version="1.7"; sha256="08f271j3gxcp4shda08kkv0v9ayaadvxgcglfsn6hjmw4hn298zg"; depends=[BMS coda gtools mvtnorm tseries]; }; contingency = derive2 { name="contingency"; version="0.0.6"; sha256="0bwvrwsa41s24j612w4jyhlfp2r6qa37ljsb3lxx27mkd9r0286d"; depends=[rje]; }; @@ -7454,7 +7470,7 @@ in with self; { correlbinom = derive2 { name="correlbinom"; version="0.0.1"; sha256="1ix3ccxzr7vqblbda5awsva3h95b69v7kc6adz622bbi8r36xxcq"; depends=[Rmpfr]; }; corrgram = derive2 { name="corrgram"; version="1.14"; sha256="12dhvwaprdmzxxk52w8sb3cx99dmzb9yhcm01pri0vcz671p57v1"; depends=[]; }; corrgrapher = derive2 { name="corrgrapher"; version="1.0.4"; sha256="0s10n2av6dyjz6x4wvznpcbvpp63v6k3r9whkqsg7fiy9m3d4dr9"; depends=[ggplot2 htmltools ingredients knitr visNetwork]; }; - corrplot = derive2 { name="corrplot"; version="0.90"; sha256="1pfmjqgakf7706l9257lqqnb6kin79gc94xfg7w47x2ijchiz1yr"; depends=[]; }; + corrplot = derive2 { name="corrplot"; version="0.91"; sha256="0j18gs633s1yh6y96bbc851lmmyx4r96cbf5f4f21i9n5vq627z0"; depends=[]; }; corrr = derive2 { name="corrr"; version="0.4.3"; sha256="096j9y1i1g7wgvn15vpil63cnb24mm0fgklbsgygwwgnlx2j0rgg"; depends=[dplyr ggplot2 ggrepel purrr rlang seriation tibble]; }; corrsieve = derive2 { name="corrsieve"; version="1.6-8"; sha256="0ak3j9khcwv5rxbicck2sr260wpmd3xj254y7pdavx2fk0b72yxs"; depends=[]; }; corset = derive2 { name="corset"; version="0.1-4"; sha256="0ladyqvkys4cldvbhkii9jwn1k5p1ym2g5bgdlz1hq1sv30ixn2f"; depends=[]; }; @@ -7561,7 +7577,7 @@ in with self; { credsubs = derive2 { name="credsubs"; version="1.1.1"; sha256="19l3vsjxd9lvaf67l61x9l0j4y124p93dfqzw7rl1ya5sxbdzs7a"; depends=[]; }; credule = derive2 { name="credule"; version="0.1.4"; sha256="0kwjjkavch21grx845kdcansaj0g407v7z3wmhy4whra9ic12y76"; depends=[]; }; cregg = derive2 { name="cregg"; version="0.4.0"; sha256="1a34jhdk4r9ywsrc5dc8wq5am3059cli60f6n2n8j04ls13fvlkd"; depends=[ggplot2 ggstance lmtest sandwich scales survey]; }; - crfsuite = derive2 { name="crfsuite"; version="0.3.4"; sha256="1003y435hn30wws0ynlla1rz21kh3dp2ggkbyy9vhxgvjzii94n7"; depends=[data_table Rcpp]; }; + crfsuite = derive2 { name="crfsuite"; version="0.4"; sha256="0arxbszaf1y8cqgzbq9a5l58n3c3rhjfp78lnhdxg95cdmdzhcfd"; depends=[data_table Rcpp]; }; cricketr = derive2 { name="cricketr"; version="0.0.26"; sha256="1y1zf9f59v95knggq5nna5rp7fqpv1swwvkajwqbpicc12g2azq4"; depends=[dplyr forecast ggplot2 httr lubridate plotrix scatterplot3d XML]; }; crimCV = derive2 { name="crimCV"; version="0.9.6"; sha256="14ckk88i7jk8a7kl51d7qfdis44jng6zz9zd72cdp80a57dvrvzq"; depends=[]; }; crimedata = derive2 { name="crimedata"; version="0.2.0"; sha256="073zlk9b4saz72d33z73mc9qzfk49bxwjhph6zbw27nl38k74j7d"; depends=[digest dplyr httr magrittr purrr readr sf stringr tibble]; }; @@ -7612,7 +7628,7 @@ in with self; { crsuggest = derive2 { name="crsuggest"; version="0.3.1"; sha256="13h6hfj3bvdb5wzq1f2m5s9crjmg0ijhfh87y1dmyimv76kr31k6"; depends=[dplyr mapview purrr sf units]; }; crtests = derive2 { name="crtests"; version="0.2.1"; sha256="0z8idz37dgwvi1q2vryldii7fn9yxd32gds77ml76jfplxbkikpd"; depends=[caret plyr stringr]; }; crul = derive2 { name="crul"; version="1.1.0"; sha256="1kjsc5gkx5k5cfwlfjp2cjm9cdzq2l1m68bnrjmahw3lkz8wzdph"; depends=[curl httpcode jsonlite mime R6 urltools]; }; - crunch = derive2 { name="crunch"; version="1.28.1"; sha256="14hc6cgxcd6k30x0bf7az025piiw1brcv5vdkc1p52z4h5by12xy"; depends=[abind crayon curl httpcache httr jsonlite]; }; + crunch = derive2 { name="crunch"; version="1.28.2"; sha256="11llq25jnjy54j5w5mfkfm5cw4zf3lm76zcjmi7hy61y8w04bc4i"; depends=[abind crayon curl httpcache httr jsonlite]; }; crunchy = derive2 { name="crunchy"; version="0.3.3"; sha256="15w72kmizsxkj1wx3nqny6329m2041mxyzi4nxh8l3hfmaisb4qm"; depends=[crunch httpcache miniUI rstudioapi shiny]; }; cruts = derive2 { name="cruts"; version="1.1"; sha256="1ih6h9qk4yflzars00d61smjqj7s4bfvc2ikp6vlki9f6k012xcx"; depends=[lubridate ncdf4 raster sp stringr]; }; cry = derive2 { name="cry"; version="0.4.1"; sha256="14wicmlg8vzrqv4wf5xzf37l29ch3cbglbanmgbqdi8p49jpw1cf"; depends=[zoo]; }; @@ -7637,7 +7653,7 @@ in with self; { csurvey = derive2 { name="csurvey"; version="1.2"; sha256="199k56rc881zdwh589m238qqwkgcx9qqnvxijk23xwf97bbjcr0l"; depends=[coneproj MASS Matrix purrr survey]; }; csv = derive2 { name="csv"; version="0.6.1"; sha256="0rl9yd63mjzhpvaipl45zlm3s1cg31cvnala7ayy8dh5mpdds3hn"; depends=[data_table stringi]; }; csvread = derive2 { name="csvread"; version="1.2.1"; sha256="1r9jvf7nbkxgl6dycdnb89yh39vacrzy8z04g8qz225rklg5b288"; depends=[]; }; - csvwr = derive2 { name="csvwr"; version="0.1.5"; sha256="050gr0kqx2rjlh20b7yvk1sh175jbj1lyfd5yryy2l5xrl8dkgd9"; depends=[jsonlite magrittr purrr readr rlang stringr]; }; + csvwr = derive2 { name="csvwr"; version="0.1.6"; sha256="1wwj0zx4jawfl5264qxa90qwll971c24hyk645r0c7wwvwa8dd9r"; depends=[jsonlite magrittr purrr readr rlang stringr]; }; csvy = derive2 { name="csvy"; version="0.3.0"; sha256="0id015szw1c63vd1h0515jsqdhyn32sxpxm89f3sb1qkgq3yynmy"; depends=[data_table jsonlite yaml]; }; cta = derive2 { name="cta"; version="1.3.0"; sha256="1i8psw6p6f4633ad17apm6v5ikrpv1dagm0s8pggpsjbbw8d655v"; depends=[intervals limSolve numDeriv]; }; ctf = derive2 { name="ctf"; version="0.1.0"; sha256="1vwqfh1y2if79rkpy6b0ay50fyis7h5rlpvhgikahnmcr2q5l14m"; depends=[iotools jsonlite]; }; @@ -7649,6 +7665,7 @@ in with self; { ctmcmove = derive2 { name="ctmcmove"; version="1.2.9"; sha256="1pxyxbbhfa8arqfb7qw10ya1b8hy9ylqbqqzys6d9dsixvdk98h0"; depends=[fda gdistance Matrix raster sp]; }; ctmle = derive2 { name="ctmle"; version="0.1.2"; sha256="0qc1ji8fjpr88dn6mrpijfcx1ij4zkrxsbcw405hxal7rli0gyp3"; depends=[glmnet SuperLearner tmle]; }; ctmm = derive2 { name="ctmm"; version="0.6.1"; sha256="1c0pxjm91xcjdhq7mdjgmay9vs8cmk24495sf9g67hfjplf5gzzm"; depends=[Bessel data_table digest expm fasttime Gmedian gsl manipulate MASS numDeriv pbivnorm pracma raster rgdal shape sp statmod]; }; + ctpm = derive2 { name="ctpm"; version="1.0.1"; sha256="1bycdh3mbimmfvv3yb50c8rwcmkbjj0jwnfiynsp2h56y3dmzc1r"; depends=[ape ClusterR ctmm slouch]; }; ctqr = derive2 { name="ctqr"; version="2.0"; sha256="0srrlgqxpp4a46wqr83zpb3xr49pf70b0n8bv9qp8ffak20d2hpj"; depends=[pch survival]; }; ctrdata = derive2 { name="ctrdata"; version="1.7.1"; sha256="1fr41yfjsywbrbwly93k3xvlc2fhfmw2d2garx387hl2kg6yl6n0"; depends=[clipr curl httr jsonlite nodbi rvest stringi xml2]; }; ctrialsgov = derive2 { name="ctrialsgov"; version="0.2.5"; sha256="0hdh1fdfaja8amf7fkvk1c6yif703132bvacq0j9pk5jr97czgpw"; depends=[DBI dplyr ggplot2 htmlwidgets lubridate Matrix plotly purrr rlang stringi tibble]; }; @@ -7660,9 +7677,10 @@ in with self; { cubature = derive2 { name="cubature"; version="2.0.4.2"; sha256="0kk9lw3s66h0sayza3in8rdj7bmgqn4v5lfckhslarpvj2fxsnv0"; depends=[Rcpp]; }; cubelyr = derive2 { name="cubelyr"; version="1.0.1"; sha256="1g3pvam1fkqh63snibqcfaazvj7lrkfip8w9pjvwdclj0l8382kl"; depends=[dplyr glue pillar purrr rlang tibble tidyselect]; }; cubeview = derive2 { name="cubeview"; version="0.2.0"; sha256="1352hi2j9x9rx4iy3xvsca86nsh39x1vnymd17f5qc8c3plfm8db"; depends=[base64enc htmltools htmlwidgets lattice raster stars viridisLite]; }; + cubfits = derive2 { name="cubfits"; version="0.1-4"; sha256="1dg60162s77p82v8vig52yl8ar8h0pijps8kqq35v1hvp5a3ny5q"; depends=[coda foreach]; }; cubicBsplines = derive2 { name="cubicBsplines"; version="1.0.0"; sha256="1dzwadhhrxgral9x4hxyyy1fyn45pmbwv6wiwfxhivkxmd3s2xdr"; depends=[]; }; cubing = derive2 { name="cubing"; version="1.0-5"; sha256="1q23fplvklaaldicqic0zpnh301m08zb9k21l47zj47g9m9pj4bc"; depends=[rgl]; }; - cuda_ml = derive2 { name="cuda.ml"; version="0.3.0"; sha256="15vhlr7adkjgxpydppg90i4zl3clpvi3bsdh3jlm0g3gkx0f0la2"; depends=[ellipsis hardhat parsnip Rcpp rlang]; }; + cuda_ml = derive2 { name="cuda.ml"; version="0.3.1"; sha256="13zxq1a2dfvfj1hsbyzmbibnvw2csifj51kq5afr95dda67zncda"; depends=[ellipsis hardhat parsnip Rcpp rlang]; }; cultevo = derive2 { name="cultevo"; version="1.0.2"; sha256="0rmncp4mrdpf3izhhqn9406i36j3d3d7i8cglip04lkfbypl9jvy"; depends=[combinat Hmisc pspearman stringi]; }; cumSeg = derive2 { name="cumSeg"; version="1.3"; sha256="0n1hp0abnd6zn72fkgkj9k875vivn5kr3q76sjy6q6va7x24j6sg"; depends=[lars]; }; cuml4r = derive2 { name="cuml4r"; version="0.1.0"; sha256="0zwm8laprwhkjn2ji16f08952hri3bk1qvpj8yhwaqiv4cj2q43k"; depends=[magrittr Rcpp rlang zeallot]; }; @@ -7692,6 +7710,7 @@ in with self; { cvGEE = derive2 { name="cvGEE"; version="0.3-0"; sha256="085qjm520l2441nakfxy851s6bfy5832b5fy54z5fp4xr1jn6snm"; depends=[]; }; cvTools = derive2 { name="cvTools"; version="0.3.2"; sha256="0b7xb6dmhqbvz32zyfbdvm9zjyc59snic6wp1r21ina48hchn3sj"; depends=[lattice robustbase]; }; cvam = derive2 { name="cvam"; version="0.9.2"; sha256="0ylfs2ry1ppigvs7py71vbslxga1d3kaijzwr8v923f3j14zkm54"; depends=[coda Formula]; }; + cvap = derive2 { name="cvap"; version="0.0.3"; sha256="1n0cil51zgwv7c4xjxf78z67crida60r7qqp3pax74dbimddbsmj"; depends=[censable cli dplyr fs magrittr readr stringr tidyr]; }; cvar = derive2 { name="cvar"; version="0.4-0"; sha256="1rfsmw2a639pkj8l5g2xm6z48jrxsywbysk7c0czpdvrh4h9h84f"; depends=[fGarch gbutils Rdpack]; }; cvcqv = derive2 { name="cvcqv"; version="1.0.0"; sha256="0327r4jw6m4avcz1zvdkxszqwaw2s9sh1i1jagl6aggd7aaiiyg0"; depends=[boot dplyr MBESS R6 SciViews]; }; cvcrand = derive2 { name="cvcrand"; version="0.1.0"; sha256="0zdf41sjqyi7mybxhypfx1vpc15w7qj9jg9bav64qbk0q5nk7jyc"; depends=[tableone]; }; @@ -7708,6 +7727,7 @@ in with self; { cxr = derive2 { name="cxr"; version="1.0.0"; sha256="12rx7hna3h84a2xb2ir43xgb3zfmh0fhn5wcdjklk2g94dmwid28"; depends=[mvtnorm optimx]; }; cxxfunplus = derive2 { name="cxxfunplus"; version="1.0"; sha256="0kyy5shgkn7wikjdqrxlbpfl3zkkv4v1p8a1vv0xkncwarjs4n8d"; depends=[inline]; }; cycleRtools = derive2 { name="cycleRtools"; version="1.1.1"; sha256="1l7w2lm4s149ndd85v41pkdrdig6l3nmhl14bdx56aw8q57fxmb0"; depends=[Rcpp xml2]; }; + cyclestreets = derive2 { name="cyclestreets"; version="0.5.2"; sha256="10zddkn383mc4qxwmh2yca6anr1j0d3bkbhwx8wwrmcykamnhnhm"; depends=[geodist httr jsonlite magrittr sf stringr]; }; cyclocomp = derive2 { name="cyclocomp"; version="1.1.0"; sha256="0gky3svk02wiajw7nfjh30684h3qxili4bvsab0m7b6cggw6bgyd"; depends=[callr crayon desc remotes withr]; }; cycloids = derive2 { name="cycloids"; version="1.0"; sha256="00pdxny11mhfi8hf76bfyhd1d53557wcbl2bqwjzlpw5x3vdnsan"; depends=[]; }; cyclomort = derive2 { name="cyclomort"; version="1.0.2"; sha256="0qmfwhrp7bq7av0yc95xnz2sd1jxfaiys9smrk1kpclnynnra9rr"; depends=[flexsurv lubridate magrittr mvtnorm plyr scales survival]; }; @@ -7721,7 +7741,7 @@ in with self; { cytometree = derive2 { name="cytometree"; version="2.0.2"; sha256="18g7av73lmnyga1kk24bf8jy599zn9n6qhr13mxsqgi0zdinicfa"; depends=[cowplot ggplot2 GoFKernel igraph mclust Rcpp RcppArmadillo]; }; cytominer = derive2 { name="cytominer"; version="0.2.2"; sha256="1n9yimjhdziv1vzjyni6ssi38nxcnfr5jpmzgxcn6vysffh5s9pz"; depends=[caret doParallel dplyr foreach futile_logger magrittr Matrix purrr rlang tibble tidyr]; }; czechrates = derive2 { name="czechrates"; version="0.2.2"; sha256="162r9inbjkgfm3y73jb3d9pxmgid94jjy5kxjp7058jsiv2ibn05"; depends=[curl dplyr httr magrittr readr tibble tidyr]; }; - czso = derive2 { name="czso"; version="0.3.5"; sha256="0wa6nyass4my3kw8mp44cw5gxswvk5zg8n9xb64xb330pvy3pf73"; depends=[curl dplyr httr jsonlite lifecycle magrittr readr rlang stringi stringr tibble usethis]; }; + czso = derive2 { name="czso"; version="0.3.7"; sha256="1gq5arnysd81i9psljzamkgxkjwxmlmqv074bhpi7xv6ij6j1886"; depends=[curl dplyr httr jsonlite lifecycle magrittr readr rlang stringr tibble usethis]; }; d3Network = derive2 { name="d3Network"; version="0.5.2.1"; sha256="1gh979z9wksyxxxdzlfzibn0ysvf6h1ij7vwpd55fvbwr308syaw"; depends=[plyr rjson whisker]; }; d3Tree = derive2 { name="d3Tree"; version="0.2.2"; sha256="142bc6gdmhzaikdfyxb1pq9nlybgkrgi2kjgk40w4wbxzx5mwkbh"; depends=[dplyr htmlwidgets magrittr plyr stringr]; }; d3plus = derive2 { name="d3plus"; version="0.1.0"; sha256="0kadz83pals03n0v3zqhmhf6visigk52yn58xckhb57fid4xzj5w"; depends=[htmlwidgets magrittr]; }; @@ -7764,7 +7784,7 @@ in with self; { darksky = derive2 { name="darksky"; version="1.3.0"; sha256="1740cw5qifgvqa0nafd6lmllxi32n1zm45zlify1yn3h1qdcszhb"; depends=[ggplot2 gridExtra gtable httr plyr]; }; dartR = derive2 { name="dartR"; version="1.9.9.1"; sha256="1i2ha796k5xhyzz8q26pygc9hy2ay2b357h50ljfs2rf4np6l0sz"; depends=[adegenet ape crayon devtools dplyr foreach ggplot2 gridExtra HardyWeinberg hierfstat MASS plyr PopGenReport robustbase SNPRelate sp StAMPP stringr tidyr vegan]; }; darts = derive2 { name="darts"; version="1.0"; sha256="07i5349s335jaags352mdx8chf47ay41q7b0mh2xjwn2h9kzgqib"; depends=[]; }; - dash = derive2 { name="dash"; version="0.9.2"; sha256="0vwb37w62kf30gk7mw0cwlhmm6sr5sn1j6fxfk8zr01bkadk43ig"; depends=[assertthat base64enc brotli crayon digest fiery glue htmltools httpuv jsonlite magrittr mime plotly R6 reqres rlang routr]; }; + dash = derive2 { name="dash"; version="0.9.3"; sha256="1wsvhnvh7sxi4gr88k6kycdr6is8akz9qjy70pl3whykyvx4cjq0"; depends=[assertthat base64enc brotli crayon digest fiery glue htmltools jsonlite magrittr mime plotly R6 reqres rlang routr]; }; dashCoreComponents = derive2 { name="dashCoreComponents"; version="1.10.0"; sha256="11jrlls6k6qlvi81741ga908aw22m05fhhr9jpzli982s611jrwl"; depends=[]; }; dashHtmlComponents = derive2 { name="dashHtmlComponents"; version="1.0.3"; sha256="01zrwjlhwwajk2lnv7is1r6nril83l65pynx856y9mvnm05xkb7m"; depends=[]; }; dashPivottable = derive2 { name="dashPivottable"; version="0.0.2-1"; sha256="1fv5pnvimf7w1k1lsijh9y2zk4z1z00m6m640jxvqla5i1rqy8cq"; depends=[]; }; @@ -7779,6 +7799,7 @@ in with self; { dataMaid = derive2 { name="dataMaid"; version="1.4.1"; sha256="06jywq3llwafjnpklqimra456crdi752zxci6z1w0v7p8blf4vjw"; depends=[ggplot2 gridExtra haven htmltools magrittr pander rmarkdown robustbase stringi whoami]; }; dataMeta = derive2 { name="dataMeta"; version="0.1.1"; sha256="13xxayqxbps07h0xr5b7sb7q30gy5zm7jzzaq4k20fskkjrzhzcm"; depends=[dplyr]; }; dataPreparation = derive2 { name="dataPreparation"; version="1.0.2"; sha256="01ns6qrqr3pm9qfzc2lky0nqcnyn7adg3pdjf461kqhb2pvzcimv"; depends=[data_table lubridate Matrix progress stringr]; }; + dataReporter = derive2 { name="dataReporter"; version="1.0.2"; sha256="1rjm6j1s229j1j9yb5y1sdi03x22qzrkmhc09k4xdmwmwmpi3s58"; depends=[ggplot2 gridExtra haven htmltools magrittr pander rmarkdown robustbase stringi whoami]; }; dataRetrieval = derive2 { name="dataRetrieval"; version="2.7.10"; sha256="0lmd2j9inc29s2xk09gk7rbypgcqzpb2vmnnbmbg1liw96jsz5wl"; depends=[curl httr jsonlite lubridate readr xml2]; }; datacleanr = derive2 { name="datacleanr"; version="1.0.2"; sha256="152n7y6hf4bds6dqlsd5ix5sr10k4idj3ywaa9ymzq5b2rp52xa3"; depends=[bslib clipr dplyr DT formatR fs glue htmltools htmlwidgets lubridate magrittr plotly purrr RColorBrewer rlang rstudioapi shiny shinyFiles shinyWidgets summarytools]; }; datadigest = derive2 { name="datadigest"; version="1.0.2"; sha256="1v4nwflrgjhwkrdlrjnqyq1spv1jkgxn1kmapml0zrvnvwf0r1a1"; depends=[haven Hmisc htmltools htmlwidgets jsonlite miniUI shiny tibble]; }; @@ -7802,7 +7823,7 @@ in with self; { dataresqc = derive2 { name="dataresqc"; version="1.1.0"; sha256="1m7c93yk3dp1l5ysgscjvmv7z0xnmgaz4bkci4ljmmmn5a9v6r3c"; depends=[]; }; datarium = derive2 { name="datarium"; version="0.1.0"; sha256="1v98yxsxhfqlalz5qy3x5axb7fy067vf3y0qg7ngixphmy9qybym"; depends=[]; }; datarobot = derive2 { name="datarobot"; version="2.18.0"; sha256="1sjng65qjqbizyfdhc3iny04x56dpvbdb8mck2kl9lyayrjxp81g"; depends=[httr jsonlite yaml]; }; - datasailr = derive2 { name="datasailr"; version="0.8.9"; sha256="1jnbjhkrzprjhxcq7hqkfanz1qrnmrlsfbsjixliap6s647w1y5g"; depends=[Rcpp]; }; + datasailr = derive2 { name="datasailr"; version="0.8.10"; sha256="03bnrgpwhmh67zrvap3cbaqd5k6nkp63b2h8m08xrdp1ngp5inik"; depends=[Rcpp]; }; datasauRus = derive2 { name="datasauRus"; version="0.1.4"; sha256="1w1yhwwrmh95bklacz44wjwynxd8cj3z8b9zvsnzmk18m5a4k0fl"; depends=[]; }; dataseries = derive2 { name="dataseries"; version="0.2.0"; sha256="11wc2p5m8qbdmkpbd21lpwl28a1dpab88c3gqyrhsn0298lpnip4"; depends=[]; }; datasets_load = derive2 { name="datasets.load"; version="1.6.0"; sha256="0ybxqk0azzaxvcdffqb8d62sap11sx2zp7j1ndva83pmamwpckfj"; depends=[DT miniUI shiny]; }; @@ -7818,6 +7839,7 @@ in with self; { daterangepicker = derive2 { name="daterangepicker"; version="0.1.0"; sha256="1605ch84ad3nmmad0yy3id0izv0nz536lxwib6rkdkjik5761gqk"; depends=[htmltools jsonify shiny]; }; datetime = derive2 { name="datetime"; version="0.1.4"; sha256="0nn1yxknsn3crmwbkws5kvfjhd65dw0fkfbg67gba0dyaqp1jg37"; depends=[]; }; datetimeutils = derive2 { name="datetimeutils"; version="0.5-0"; sha256="030md2pydhgx8x8chga7byl8x41m2dbw94b4ds7md2nqkdrq7hqz"; depends=[]; }; + dateutils = derive2 { name="dateutils"; version="0.1.5"; sha256="03xch5wcvv15fy9x70smrki6374lddhf0sfp0inymdsq4g8wp4bc"; depends=[data_table Rcpp RcppArmadillo seasonal]; }; datoramar = derive2 { name="datoramar"; version="0.1.0"; sha256="0zq6vhq6dmsyagmqrmb85z6fy9qhwra3s3iasr3jgc4ryr009pml"; depends=[httr jsonlite tibble]; }; datos = derive2 { name="datos"; version="0.3.0"; sha256="0q0qjk9iahxzz4gycmiq4nb34kiqxb9bxbh55slp31bvx32zcz6n"; depends=[babynames dplyr forcats fueleconomy gapminder ggplot2 Lahman nasaweather nycflights13 rlang tibble tidyr yaml]; }; datplot = derive2 { name="datplot"; version="1.0.0"; sha256="1y9pls1g2flz8n3jbh4jcp1fn78qwfbgsrzyf3jms9f6w8fs0f1d"; depends=[]; }; @@ -7978,6 +8000,7 @@ in with self; { designsize = derive2 { name="designsize"; version="0.1.0"; sha256="1c9b320vssw3s1ybyialg5s85k1vfllbw40qfgmvnsr3imc2inb2"; depends=[]; }; desirability = derive2 { name="desirability"; version="2.1"; sha256="094gxvp6a60lfcc0a0gk9rv1p6ajnzq9m58sy8cvhcj5337g4fmk"; depends=[]; }; desire = derive2 { name="desire"; version="1.0.7"; sha256="0jmj644nj6ck0gsk7c30af9wbg3asf0pqv1fny98irndqv508kf6"; depends=[loglognorm]; }; + desla = derive2 { name="desla"; version="0.1.0"; sha256="12daspn24131gw1hizd169ijxkc8wvfl2xlicd0pwz85j8bbsa95"; depends=[Rcpp RcppArmadillo RcppProgress Rdpack]; }; desplot = derive2 { name="desplot"; version="1.9"; sha256="0dg8j3l6x12g4h5hsxwhxvc8i03gwlvm80l03rx3wwqsx070if1y"; depends=[ggplot2 lattice reshape2]; }; details = derive2 { name="details"; version="0.2.1"; sha256="03fw3jbf1a34w9c205wwjkqnw6ic1gylsf36qw33mx4ba252s2hy"; depends=[clipr desc httr knitr magrittr png withr xml2]; }; detect = derive2 { name="detect"; version="0.4-4"; sha256="1gzd98b4kg5rw0kpgznrb1wmr3iavdq5983n6wqx33lga1lqq9d6"; depends=[Formula Matrix pbapply]; }; @@ -8067,7 +8090,7 @@ in with self; { diffusr = derive2 { name="diffusr"; version="0.1.4"; sha256="1f3h387kblw1xzdnxphwgfl1n7f6i07kk7kfslvbfxkalbish6ii"; depends=[igraph Rcpp RcppEigen]; }; diffviewer = derive2 { name="diffviewer"; version="0.1.1"; sha256="01phkaaa0zylyi23siwam18i1ggfgq2m66d69lnz9ips1yh12yca"; depends=[htmlwidgets jsonlite]; }; digest = derive2 { name="digest"; version="0.6.28"; sha256="006vqwfrry84xn51lxlfalzn9yqr1k81s39r0zy251azx5sqqcja"; depends=[]; }; - digitTests = derive2 { name="digitTests"; version="0.1.0"; sha256="1pqzbsg7fabkbw3727c89rfxl6xc9l95cawjinqgq3g0fl2vr4hv"; depends=[]; }; + digitTests = derive2 { name="digitTests"; version="0.1.1"; sha256="1q9ksyzvbaq4n47ww7sq0w0arsy1i11b1zlyyzk0g1ks35jlxgpv"; depends=[]; }; digitalDLSorteR = derive2 { name="digitalDLSorteR"; version="0.1.1"; sha256="083ap03wxmzqynk66gswzilrfd8wrdsrkixdasw1w46pssrab79k"; depends=[dplyr edgeR ggplot2 ggpubr gtools keras Matrix Matrix_utils pbapply RColorBrewer reshape2 reticulate rlang S4Vectors SingleCellExperiment splatter SummarizedExperiment tensorflow tidyr zinbwave]; }; digitalPCR = derive2 { name="digitalPCR"; version="1.1.0"; sha256="0hwqq84yr1hnvf4bygc5425887dhqjjjyy1ils71iavcal04s8pb"; depends=[]; }; digitize = derive2 { name="digitize"; version="0.0.4"; sha256="1qw4x4z9vrs79sd9b2daw668nc6nvjl4qhayfqmd87yxa2ydv6x0"; depends=[readbitmap]; }; @@ -8132,6 +8155,7 @@ in with self; { distTails = derive2 { name="distTails"; version="0.1.2"; sha256="10p7rfqfkhcwq10lhz3cq9i4k1jdccks4y3791lajljsxz5jrca4"; depends=[ercv gsl MASS]; }; distance_sample_size = derive2 { name="distance.sample.size"; version="0.0"; sha256="0hlf3kp34rg1gnkxp4k3rnv0shv4fpgb0rhx3a6x5692lhyigbcs"; depends=[MASS]; }; distances = derive2 { name="distances"; version="0.1.8"; sha256="0mmwks1qzx680izv26x8mcfs4i16mnmf6s9arz1ssx470xwxljxy"; depends=[]; }; + distanceto = derive2 { name="distanceto"; version="0.0.2"; sha256="05wmv1slvwaw6cffnqad2bp8cn30fnyc4gmi106922ah98k3l5g0"; depends=[geodist nabor sf]; }; distantia = derive2 { name="distantia"; version="1.0.2"; sha256="12d6xzhcxs3xxyj82ih6chrr638siy45gna1s22vhnqvjd5jixc6"; depends=[arrangements data_table doParallel fields foreach iterators plyr RColorBrewer viridis]; }; distcomp = derive2 { name="distcomp"; version="1.3-1"; sha256="06vkyl0r9s1ci8cq6mqc54z5drcw0mabn44864230jd4b3466ifl"; depends=[digest dplyr gmp homomorpheR httr jsonlite magrittr R6 rlang shiny stringr survival]; }; distcrete = derive2 { name="distcrete"; version="1.0.3"; sha256="0sa6z2mpmk51ig1r7bmpbyv2jd8z6z7mixki2vlq1kybg8cx3wmi"; depends=[]; }; @@ -8235,7 +8259,7 @@ in with self; { dominanceanalysis = derive2 { name="dominanceanalysis"; version="2.0.0"; sha256="0qxldvlgbysy9j17kb0a9p132a04a4j12h4m0r70zv2752fj24c0"; depends=[]; }; domino = derive2 { name="domino"; version="0.3.1"; sha256="0f67w0z5jy82kgm3l1rji430ayigw30vmmwp3i1nz0xibsx7jxv4"; depends=[]; }; domir = derive2 { name="domir"; version="0.2.0"; sha256="0zy0ymsx6m6d26szpk3h85yknqraa7gxi8765qdxjs1cajl0dgll"; depends=[]; }; - donut = derive2 { name="donut"; version="1.0.1"; sha256="17qiy9j0qm2q2gcysd5717bdl9nmkd7pd5z22pcj3icvxcpssval"; depends=[]; }; + donut = derive2 { name="donut"; version="1.0.2"; sha256="0idynkhcdn9va32m1n1rxjyb7ghbkhyy1959wks2bn1a7k4yg87i"; depends=[]; }; doolkit = derive2 { name="doolkit"; version="1.0.0"; sha256="0dcn4a04ch5ssa80lfjhip4sff48i6wm0mc5wj52zmkq8b24yr48"; depends=[concaveman ggplot2 igraph MASS Morpho rgl Rvcg sp tis usethis]; }; doremi = derive2 { name="doremi"; version="1.0.0"; sha256="005kp6f4jh8y1ykhri3mjnvc9w66b1a51bji574rkbxd1ans6mal"; depends=[data_table deSolve futile_logger ggplot2 gridExtra lme4 lmerTest zoo]; }; dosearch = derive2 { name="dosearch"; version="1.0.8"; sha256="1jymk03snrfmr9da7h7l9823mzlcn6y4z6ay6nzi82n08d9xmp06"; depends=[Rcpp]; }; @@ -8301,6 +8325,7 @@ in with self; { drought = derive2 { name="drought"; version="1.0"; sha256="1rj3aycvkb0f85p12l356rlhid4zfzqkhks20x2hhwvpk8nhri8h"; depends=[copula]; }; drpop = derive2 { name="drpop"; version="0.0.3"; sha256="1gh0w1a59070g9mmck4fp9591vfw23c5nlj3jrkxwarp4vfy1dqp"; depends=[dplyr gam ggplot2 janitor nnet nnls ranger reshape2 stringr SuperLearner tidyr]; }; drtmle = derive2 { name="drtmle"; version="1.1.0"; sha256="08a6k0nrg6mqdslwjc71583x52vnax87nbfalk98zczwvrrdwvxa"; depends=[future_apply np SuperLearner]; }; + drugprepr = derive2 { name="drugprepr"; version="0.0.4"; sha256="07401dqw4krqh3rv7y13526n0xjdlaw14gcxwranksjchmqjd3ij"; depends=[DescTools doseminer dplyr purrr rlang sqldf stringr tidyr]; }; drumr = derive2 { name="drumr"; version="0.1.0"; sha256="09xi3sf424bpq10fq25j209dylfbi1lfd911r44ffadkxzvp5p1s"; depends=[audio stringr]; }; ds = derive2 { name="ds"; version="4.0"; sha256="1iic5fb27cnhsa83zg28hydrhzc01i9z0711xvk95c3gv7mbfp2p"; depends=[]; }; ds4psy = derive2 { name="ds4psy"; version="0.7.0"; sha256="1dyylnx2lsdvsv9cydjp4qm1dgn4lv44afr2hplqyi45jmmzy8mm"; depends=[ggplot2 unikn]; }; @@ -8396,6 +8421,7 @@ in with self; { eRTG3D = derive2 { name="eRTG3D"; version="0.6.4"; sha256="1illpky5p3jappqia1334ra804h18l065r1vkfvpjw8y3hxg2ls2"; depends=[CircStats ggplot2 pbapply plotly raster rasterVis tiff]; }; eRm = derive2 { name="eRm"; version="1.0-2"; sha256="0smym010kswc5vx90qr3x1vl16xj1x1i54rvrj006dc4agc1vmlk"; depends=[colorspace lattice MASS Matrix psych]; }; eSDM = derive2 { name="eSDM"; version="0.3.7"; sha256="0rv5hhjsdkq0837822d52xfvfbj9qx1kjmqj8wyny335gv631205"; depends=[dplyr magrittr purrr rlang ROCR sf shiny units]; }; + eSIR = derive2 { name="eSIR"; version="0.4.1"; sha256="0vni057bnvjyj0s9vl6rr4qh3pz8h60fwck0xqzyl86psw73g1dh"; depends=[chron coda data_table ggplot2 gtools reshape2 rjags scales]; }; eadrm = derive2 { name="eadrm"; version="0.1.3"; sha256="0bb9glwqkzr1px03l4dxvgzm7zkrp3349l5fwfmw6jp0fxdl98ij"; depends=[]; }; eaf = derive2 { name="eaf"; version="2.2"; sha256="13q6g6vkwb3i2cdwff4qw0bz21qmd9xx5wacmdsp7s312vf6lwyv"; depends=[modeltools Rdpack]; }; earlyR = derive2 { name="earlyR"; version="0.0.5"; sha256="0978vv48sj1hs61rdb3xv02s8qz03jcm1c8q1mbb3d033x1q7k22"; depends=[distcrete EpiEstim epitrix ggplot2]; }; @@ -8427,14 +8453,14 @@ in with self; { eatDB = derive2 { name="eatDB"; version="0.5.0"; sha256="0lym1g411ykb2vzi5yr570lmyh30br667wkm5dvnvfs7bsmk05il"; depends=[DBI RSQLite]; }; eatGADS = derive2 { name="eatGADS"; version="0.18.1"; sha256="09hjn1w2mng2ypmlm8zw9dl4q430c75i5nil4x86bm9ap8zw511n"; depends=[data_table eatDB eatTools haven hms plyr stringi tibble]; }; eatRep = derive2 { name="eatRep"; version="0.13.7"; sha256="1667cq00gvcbvsfmplv97bmgkfyq9zi08d5yzpa0l7x7d5xgxmm2"; depends=[BIFIEsurvey boot car combinat eatGADS eatTools EffectLiteR estimatr fmsb Hmisc janitor lavaan lme4 mice miceadds msm plyr progress reshape2 survey tidyr]; }; - eatTools = derive2 { name="eatTools"; version="0.7.0"; sha256="1rhf6c6j7qwz5y20dip07h4044581pf9kaq71rl8sswbcsb7nny5"; depends=[data_table]; }; + eatTools = derive2 { name="eatTools"; version="0.7.1"; sha256="1ppkpgcq6bjyl1lyqfzm5d6wdh4wirny88h94sh1029wlrr5qksb"; depends=[data_table]; }; ebGenotyping = derive2 { name="ebGenotyping"; version="2.0.1"; sha256="1jllzc7kvvckrws8qhgvwy626llyb68sp1davp7swx48sf7rwcxc"; depends=[]; }; ebSNP = derive2 { name="ebSNP"; version="1.0"; sha256="0x3ijwg4yycsfy6jch1zvakzfvdgpiq8i7sqdp5assb8z1823w0b"; depends=[]; }; eba = derive2 { name="eba"; version="1.10-0"; sha256="03jr54xq109x9bf8kcs8mi7am17l9ya3xdkdppd8imwd2paqrssk"; depends=[nlme psychotools]; }; ebal = derive2 { name="ebal"; version="0.1-6"; sha256="1cpinmbrgxxv0fzi9qi2inv4hw2lz7iq4b0ggp316rdqqb5bj9r0"; depends=[]; }; ebci = derive2 { name="ebci"; version="1.0.0"; sha256="00fa2y4ha9nlbjd01qckrrn721s63ja61n5jr4wm7ac6y7xivb2i"; depends=[]; }; ebdbNet = derive2 { name="ebdbNet"; version="1.2.6"; sha256="1qzwpr76nwvgylqdg7vhrbvh2lb1zrxx3g120yz156hhs4awv4kz"; depends=[igraph]; }; - ebirdst = derive2 { name="ebirdst"; version="0.3.2"; sha256="04z3l08fnwh77hgcydm8aschv31499al3ljn5sinx527my1m28v1"; depends=[DBI dplyr fasterize gbm ggplot2 gridExtra jsonlite magrittr mgcv PresenceAbsence rappdirs raster rgdal rlang RSQLite sf stringr tidyr viridisLite xml2]; }; + ebirdst = derive2 { name="ebirdst"; version="0.3.3"; sha256="05k388rsqjgia9jgnlq799l22zg10kvxs7l4b51kknrpqd5pis8d"; depends=[DBI dplyr fasterize gbm ggplot2 gridExtra jsonlite magrittr mgcv PresenceAbsence rappdirs raster rgdal rlang RSQLite sf stringr tidyr viridisLite xml2]; }; ebmstate = derive2 { name="ebmstate"; version="0.1.2"; sha256="0x7mklp8209xi0lglh9ggjm7crvvx83arryap319lwjll2d8p89s"; depends=[HDInterval mstate Rcpp survival]; }; ebreg = derive2 { name="ebreg"; version="0.1.3"; sha256="1xrs9afjd5hkdmhglj3md5i5hm7awlcdlccz3y2lw4c73lx31ywz"; depends=[lars Rdpack]; }; ec50estimator = derive2 { name="ec50estimator"; version="0.1.0"; sha256="1zg4p1734q2jzifzfi2lf9wz3687s3cdn0yzkiwbc6w49mgdw877"; depends=[dplyr drc magrittr tibble tidyr]; }; @@ -8446,7 +8472,7 @@ in with self; { ecespa = derive2 { name="ecespa"; version="1.1-13"; sha256="0a8s923xzw6wkl9240mqsr7lpvjmi20kqn2zsbax3rrrdf4gqfkx"; depends=[spatstat spatstat_core spatstat_geom]; }; ech = derive2 { name="ech"; version="0.1.1.2"; sha256="1mw68dkm6n6zj27rmyw33gaha1nly1srr6v1d5iib72b1gwnik8l"; depends=[assertthat curl dplyr fs geouy glue haven janitor labelled laeken purrr readxl rlang srvyr statar stringr survey tidyr]; }; echarts4r = derive2 { name="echarts4r"; version="0.4.2"; sha256="1mv080bcprskzhc778ccd5yvrp48fawdjah0hwj795cz72603jd3"; depends=[broom corrplot countrycode dplyr htmltools htmlwidgets jsonlite purrr rstudioapi scales shiny]; }; - echarty = derive2 { name="echarty"; version="1.4.1"; sha256="1fzyjvjdcds5fbcgmd6v143pfl52ac6jq2ic0p8yaplg43gwdrcr"; depends=[dplyr htmltools htmlwidgets jsonlite shiny]; }; + echarty = derive2 { name="echarty"; version="1.4.2"; sha256="0xz4vjwwnbzx9y556kl76rqfvgbgvmp3n6vs8j1mkqfk20dlzn5y"; depends=[dplyr htmltools htmlwidgets jsonlite shiny]; }; echelon = derive2 { name="echelon"; version="0.1.0"; sha256="0dw15igx8jwgfr1f7p5pspxjiqhqmfp7shdhq8g07f4bj76irzm4"; depends=[]; }; echo_find = derive2 { name="echo.find"; version="4.0.1"; sha256="1nadqqpxgx2ck16nzjp5ajm6714452qzllg5cq1jpisv1yb31db2"; depends=[boot minpack_lm]; }; echogram = derive2 { name="echogram"; version="0.1.2"; sha256="0kir7x32fk3fc63kr3b2j0hfkmivs2pwrlxyjvdg7xqc59hjp3ma"; depends=[geosphere readHAC]; }; @@ -8637,7 +8663,7 @@ in with self; { enpls = derive2 { name="enpls"; version="6.1"; sha256="12088v9xnj5b3dlakqz1hbzxz4mdai7xi7s2fpx8lj3y3lx7znmb"; depends=[doParallel foreach ggplot2 plotly pls reshape2 spls]; }; enrichR = derive2 { name="enrichR"; version="3.0"; sha256="0i3kfq4fkmx47n61zj5f87iv8ci6gbgy90a7s8dy9zbndzvbgya3"; depends=[ggplot2 httr rjson]; }; enrichwith = derive2 { name="enrichwith"; version="0.3.1"; sha256="05fhx323ani86wdxbjp8dgw4d1iq4kr1887646w072a6iq93bwhm"; depends=[]; }; - ensembleBMA = derive2 { name="ensembleBMA"; version="5.1.6"; sha256="05zrsy9pqy4hnijlsb5fgqj6b8lrsanpmsz330zp79ad0rvpybqy"; depends=[chron]; }; + ensembleBMA = derive2 { name="ensembleBMA"; version="5.1.7"; sha256="010djsyinxigcd5kmsr8sd1ppa80fp2dfmfz0ld4sl43m657iy3b"; depends=[chron]; }; ensembleMOS = derive2 { name="ensembleMOS"; version="0.8.2"; sha256="16d8030zfdwifqrh45vz3gf5n0bix0mhsmsnydgjq1fghdklcmyx"; depends=[chron ensembleBMA evd]; }; ensembleR = derive2 { name="ensembleR"; version="0.1.0"; sha256="0xvq1jlsp7gsk46i847nfvadxwlh09gi2rgwss2wf2xmh1855ray"; depends=[caret]; }; ensembleTax = derive2 { name="ensembleTax"; version="1.1.1"; sha256="1kxkv8b6qgrbylp16hlh53h3sr079jqhypv1fk4g5fr349zrjgv3"; depends=[Biostrings DECIPHER dplyr ggplot2 reshape2 stringr usethis]; }; @@ -8671,7 +8697,7 @@ in with self; { eph = derive2 { name="eph"; version="0.4.0"; sha256="0yznfhsp6sgymq02m4g477pnqlmmbdvwv32sidaa2giaf3nr4izj"; depends=[assertthat attempt curl dplyr expss glue htmltools janitor leaflet magrittr purrr questionr readr readxl rlang rvest stringr tibble tidyr tidyverse xml2 zoo]; }; epiDisplay = derive2 { name="epiDisplay"; version="3.5.0.1"; sha256="08ym6hcbmajzr4rasdb35fxk79vgpzfc16rmcm34f7f3zzz09dyl"; depends=[foreign MASS nnet survival]; }; epiGWAS = derive2 { name="epiGWAS"; version="1.0.2"; sha256="0jqblfmz02za3b2pgi15379bzgh98yv5kyv8kh0lkzhrmpgph2zj"; depends=[DescTools glmnet matrixStats SNPknock]; }; - epiR = derive2 { name="epiR"; version="2.0.38"; sha256="0bb0c2fhjgr845lr5pgsac10faqa6zrq6sb0jhsm6qpaqsi1f1ja"; depends=[BiasedUrn lubridate pander survival]; }; + epiR = derive2 { name="epiR"; version="2.0.39"; sha256="0wml3xdg9371cxfjavj9h74ggaaq2fncjk151hkaya0lwk5lyxyc"; depends=[BiasedUrn lubridate pander sf survival]; }; epibasix = derive2 { name="epibasix"; version="1.5"; sha256="0ivr51x37cbdryli9b4p4iq9v2c90zwmywrwdmg7ryq5vprvvbp0"; depends=[]; }; epicontacts = derive2 { name="epicontacts"; version="1.1.2"; sha256="07vnvfqm9vghmrjy3g1x3mz6qsf09qi04xq2nm9n4cgxjmbr0gia"; depends=[colorspace dplyr igraph threejs visNetwork]; }; epidata = derive2 { name="epidata"; version="0.4.0"; sha256="0v3s1vrf2iqh03rkkwrlz6mhpbsbjxkayrqdx04vrnja4i9ljshk"; depends=[dplyr httr jsonlite purrr readr rvest stringi tidyr tinytest xml2]; }; @@ -8682,7 +8708,7 @@ in with self; { epikit = derive2 { name="epikit"; version="0.1.2"; sha256="0b9kc7qr7nkafmak60pyj7hln19w4zp33pk5y48qmfsxgarl6pv3"; depends=[binom dplyr forcats glue rlang scales tibble tidyr tidyselect]; }; epimdr = derive2 { name="epimdr"; version="0.6-5"; sha256="1nxdlz7gl9vrha9iw92y0s9dmm101gkz0rsqxqg1rdxanr6hs6sh"; depends=[deSolve polspline shiny]; }; epinet = derive2 { name="epinet"; version="2.1.8"; sha256="10bgq66n99kkz0nhmsz508aypxk57zk19p5l3xrb28n72k4rfgrf"; depends=[network]; }; - epinetr = derive2 { name="epinetr"; version="0.94"; sha256="1bd9qfs7q4d199lqiny16ck0y2ji4p2nkx7ds5dafpk5pqa314fc"; depends=[GA ggplot2 igraph Rcpp RcppAlgos reshape2 vcfR]; }; + epinetr = derive2 { name="epinetr"; version="0.95"; sha256="1hfsqwf8yf82m18qx4na9vsi653lxl16f6sd0smv9nckw1gdpqw5"; depends=[GA ggplot2 igraph Rcpp RcppAlgos reshape2 vcfR]; }; epiphy = derive2 { name="epiphy"; version="0.3.4"; sha256="04wsppjycnrzrml3zxrpr0xdxxas3hj8rskiivx5vfmfjpwipq4r"; depends=[ggplot2 msm pbapply Rcpp transport]; }; episcan = derive2 { name="episcan"; version="0.0.1"; sha256="02687f8gpc2czn19lapvazd6mnm8902ay0lhgi3wdrzfhir42m4r"; depends=[]; }; episensr = derive2 { name="episensr"; version="1.1.0"; sha256="0670h2x8mcd4g7m17k0zascq5yb3llsvpp9qwzghiha0f9ai8xw0"; depends=[actuar boot dagitty ggdag ggplot2 magrittr trapezoid triangle]; }; @@ -8703,7 +8729,7 @@ in with self; { epubr = derive2 { name="epubr"; version="0.6.3"; sha256="1cpsxx02qcj3brr3ddy8dbnaf6wxf42s9y3kx8fq5ki3pmlwry7g"; depends=[dplyr magrittr tibble tidyr xml2 xslt]; }; epwshiftr = derive2 { name="epwshiftr"; version="0.1.3"; sha256="11vfs2r2fzbdd3r0s8ikafgq9ins06ym73wqxyijz60h75py4ic7"; depends=[checkmate data_table eplusr fst future_apply jsonlite progressr psychrolib rappdirs RNetCDF units]; }; epxToR = derive2 { name="epxToR"; version="0.4-1"; sha256="00m64ham9fd9dsw37ic2m62fy4pvmwfwmjx8cg6n4rwbgq9q49sg"; depends=[httr XML]; }; - eq5d = derive2 { name="eq5d"; version="0.10.0"; sha256="0yy19z5a0hkmd8j48kkjlyjs32zv1a7b0f8ykk7cjl8irai7yiys"; depends=[]; }; + eq5d = derive2 { name="eq5d"; version="0.10.1"; sha256="00474dmjpifl7xrm2ln5znghyy7sm1r16dqfk49vafnd4wa89wm1"; depends=[]; }; eqs2lavaan = derive2 { name="eqs2lavaan"; version="3.0"; sha256="1lj6jwkfd84h9ldb6l74lrx2pnsl1c0d7mnrcrjkska87djb2nzd"; depends=[lavaan stringr]; }; eqtl = derive2 { name="eqtl"; version="1.1-7"; sha256="0xfr8344irhzyxs9flnqn4avk3iv1scqhzac5c2ppmzqhb398azr"; depends=[qtl]; }; equalCovs = derive2 { name="equalCovs"; version="1.0"; sha256="18w7panyd6mhdr3x1iz9fkrw7min22rishs4xhkxgxs3nnyglkrn"; depends=[]; }; @@ -8750,7 +8776,7 @@ in with self; { esc = derive2 { name="esc"; version="0.5.1"; sha256="0gns7gz55p6pha05413r3hlvd7f2v1amxkg13d197mab1ypqic7q"; depends=[]; }; escalation = derive2 { name="escalation"; version="0.1.4"; sha256="1iyjp20rzz3lrgn183jvjcf7vvmk66f3rgyv22s2ja4b98598ha4"; depends=[binom BOIN dfcrm DiagrammeR dplyr gtools magrittr purrr RColorBrewer stringr tibble tidyr tidyselect trialr viridis]; }; eseis = derive2 { name="eseis"; version="0.5.0"; sha256="03pjcms3aj7sm2wrld64v1dw53bqn9pmsayndma03abjh66rblii"; depends=[caTools fftw IRISSeismic matrixStats multitaper raster Rcpp reticulate rgdal rmarkdown shiny signal sp XML]; }; - esemifar = derive2 { name="esemifar"; version="1.0.0"; sha256="0yy5ya6saw7njf06gad3bjh2wf56y0b9hid3bjxjmxb0w9pi660i"; depends=[fracdiff smoots]; }; + esemifar = derive2 { name="esemifar"; version="1.0.1"; sha256="1fj6hdz4kvign9whxclgriafqc8m1yibvwqprvyn861v31kmlc55"; depends=[fracdiff smoots]; }; eshrink = derive2 { name="eshrink"; version="0.1.2"; sha256="0min4j1dyd08i0fyn9a4iasjlhq08bn74bjz8vj1gq9l114v795k"; depends=[glmnet MASS]; }; esmisc = derive2 { name="esmisc"; version="0.0.3"; sha256="1d6xrdxwn85c8s60s7vzaymh7wa9f7fzd79hq5spzd12fr3zisvj"; depends=[ggplot2 raster readr]; }; esmprep = derive2 { name="esmprep"; version="0.2.0"; sha256="076sm26mkkvig2g04k32z2dlp2h9gnqgzckhirl4pqm01siknl61"; depends=[lubridate]; }; @@ -8763,7 +8789,7 @@ in with self; { estadistica = derive2 { name="estadistica"; version="0.1.0"; sha256="1xhxy4nzpv5qw6nfg8zrhh6lvcrwz2kf793safah4snfqir0qx6w"; depends=[data_table dplyr ggplot2 magrittr plotly rio shiny shinydashboard tidyr tidyverse]; }; estatapi = derive2 { name="estatapi"; version="0.4.0"; sha256="0wp5w9w0b832fnl7kchjqmychnf5896q50grw8hwdc1km14dfzkg"; depends=[dplyr httr purrr readr rlang tibble]; }; estimability = derive2 { name="estimability"; version="1.3"; sha256="0cifdaa71spkcxl4db4z884jrya865sg3dhcv4isd8fnzg2pjcd3"; depends=[]; }; - estimatr = derive2 { name="estimatr"; version="0.30.2"; sha256="0sdsfngxckcis2gfd2jz1dq8vlh7zcf592xqlglbv14755s348z2"; depends=[Formula generics Rcpp RcppEigen rlang]; }; + estimatr = derive2 { name="estimatr"; version="0.30.4"; sha256="0qvic3dviz28syxlw92wzwdl6qj2n23cvm0sc3ww23vwg5hdnk8m"; depends=[Formula generics Rcpp RcppEigen rlang]; }; estimraw = derive2 { name="estimraw"; version="1.0.0"; sha256="0z591mblbzc3qv9pyv8zn0r5r3d8f1l02sxdc649gl1lb40kalz0"; depends=[dplyr]; }; estmeansd = derive2 { name="estmeansd"; version="0.2.1"; sha256="053mf9yq095dvlz2cj5haav6yabvgj78qpp411xd9nr1ac17jxz9"; depends=[metaBLUE]; }; estout = derive2 { name="estout"; version="1.2"; sha256="0whrwlh4kzyip45s4zifj64mgsbnrllpvphs6i5csb7hi3mdb3i5"; depends=[]; }; @@ -8840,7 +8866,7 @@ in with self; { exdqlm = derive2 { name="exdqlm"; version="0.1.2"; sha256="0wkiihdvgf7lyzv02l10spxcn127w1jblz6fbr7yf16mfq0m9mlk"; depends=[brms coda crch dlm FNN GeneralizedHyperbolic HyperbolicDist LaplacesDemon magic tictoc truncnorm]; }; exif = derive2 { name="exif"; version="0.1.0"; sha256="12phqn5x1x0xs2xczl3064q983dalm261vqpyafhdcndm1y3gwbc"; depends=[Rcpp]; }; exifr = derive2 { name="exifr"; version="0.3.2"; sha256="0iqm513h7951q3hg8maf2hbprqmsm93cb3mbg3g91qawpx77494c"; depends=[curl jsonlite plyr rappdirs tibble]; }; - exiftoolr = derive2 { name="exiftoolr"; version="0.1.5"; sha256="0amfv2avnyvlz8mhmzmklpqykshdxrcxivans6j9hnimj0ygw6ad"; depends=[curl data_table jsonlite zip]; }; + exiftoolr = derive2 { name="exiftoolr"; version="0.1.6"; sha256="1vqmihsfz831q8m5w7v5pc5mbcy3v03jg36k0rg02lvh7phpk63y"; depends=[curl data_table jsonlite zip]; }; exoplanets = derive2 { name="exoplanets"; version="0.2.2"; sha256="0jzqzw0sn2cixxl6wdikz6cmm2qijxcjp81c98dfqamjcnbpqc1f"; depends=[cli httr memoise readr tibble]; }; exp2flux = derive2 { name="exp2flux"; version="0.1"; sha256="1b3ychb4wcf6dbccx2ddms5xygdgc296cnw4474fm81yrfjznplv"; depends=[gage igraph sybil]; }; expDB = derive2 { name="expDB"; version="0.1.0"; sha256="0h7f9127vrd45lg7k0bkgq3cghxwv2z11p4pak20pakk13g82hj4"; depends=[DBI dplyr lubridate magrittr png readxl reshape2 rlang RSQLite stringr tibble tidyr tidyverse weaana]; }; @@ -9069,7 +9095,7 @@ in with self; { fdakma = derive2 { name="fdakma"; version="1.2.1"; sha256="0j9qgblrl7v4586dd6v0hjicli6jh8pkk5lzn8afpl75xfs24six"; depends=[]; }; fdaoutlier = derive2 { name="fdaoutlier"; version="0.2.0"; sha256="1jpd9mszd0grn7rwi3dmgl6l5dggwsnz1kyljz2gcfm2wck2zhbz"; depends=[MASS]; }; fdapace = derive2 { name="fdapace"; version="0.5.7"; sha256="0mmdfp27a7j0hvziir8b2dybifrkahhcinnqf84xa8pp24w0v7mv"; depends=[Hmisc MASS Matrix numDeriv pracma Rcpp RcppEigen]; }; - fdapaceShiny = derive2 { name="fdapaceShiny"; version="1.0.3"; sha256="02b5xpxw2fc82jpglbdrwr3g2sdssazhsl3s1qa853xpvh09233v"; depends=[bs4Dash config dplyr DT fdapace ggplot2 golem htmltools magrittr plotly purrr reshape2 shiny shinyjs shinyWidgets stringr tidyr]; }; + fdapaceShiny = derive2 { name="fdapaceShiny"; version="1.0.5"; sha256="1cy1rcmsyr78q3wqkaw3lvqzlr07n7djrqqpwm3y8xz60fybs8p6"; depends=[bs4Dash config dplyr DT fdapace ggplot2 golem htmltools magrittr plotly purrr reshape2 shiny shinyjs shinyWidgets stringr tidyr]; }; fdasrvf = derive2 { name="fdasrvf"; version="1.9.7"; sha256="06kq9rlszydr55sg17yybwa89qd4d1826jyw4kmx4aligx7ycqq6"; depends=[coda doParallel fields foreach lpSolve Matrix matrixcalc mvtnorm Rcpp RcppArmadillo testthat tolerance viridisLite]; }; fdatest = derive2 { name="fdatest"; version="2.1"; sha256="0zdnmssir5jz2kbfz4f4xshjfv4pivqx7cbh2arlx6ypkjrjws8n"; depends=[fda]; }; fdcov = derive2 { name="fdcov"; version="1.1.0"; sha256="0savsgcifcjjqrmbpn6m30gncq5iigqxpb19l710wlx8nm98svjh"; depends=[corrplot matlab]; }; @@ -9079,7 +9105,7 @@ in with self; { fdq = derive2 { name="fdq"; version="0.12"; sha256="198nsyzv0ni2mjx12wik58c7z5vrc1mfk80k3iv94dz1iq9fprqf"; depends=[data_table Fgmutils ggplot2 randomcoloR sqldf]; }; fdrDiscreteNull = derive2 { name="fdrDiscreteNull"; version="1.4"; sha256="1lwznpwfnhhv0h7qwy9jc7li752bq7hgmkh86qzyqz7k18zgx4iw"; depends=[MCMCpack qvalue]; }; fdrci = derive2 { name="fdrci"; version="2.2"; sha256="0q5m7h6zfbwv2ab8ab6p4d8y8ib24ryvmngyk564589dl2fwrn6q"; depends=[ggplot2]; }; - fdrtool = derive2 { name="fdrtool"; version="1.2.16"; sha256="1aap4k1l3a9m43374xq688mqnzkgqx8l021li262r3h1xr4adpp7"; depends=[]; }; + fdrtool = derive2 { name="fdrtool"; version="1.2.17"; sha256="1pf554vb902vavgqc4c0kgghywbgcvr3lkkr414bxngavcd60lil"; depends=[]; }; fds = derive2 { name="fds"; version="1.8"; sha256="1284vncixrzrz9x6b52gslrbrbia07sd0xac7nwdqhp5f5v5wfi0"; depends=[rainbow RCurl]; }; fdth = derive2 { name="fdth"; version="1.2-6"; sha256="179qkmdr18nx5hrx78sh64r76h7n3v00rxyg2d7l0n8kzbbi9q1v"; depends=[xtable]; }; feamiR = derive2 { name="feamiR"; version="0.1.0"; sha256="0yp3bxh47aspfnnxi4wm4drkndv265rv58n9x9cp5jazwdy4qgg9"; depends=[dplyr e1071 GA ggplot2 magrittr randomForest reticulate rpart rpart_plot stringr tibble]; }; @@ -9107,11 +9133,11 @@ in with self; { ferrn = derive2 { name="ferrn"; version="0.0.1"; sha256="1zp18hfnvmdb2w0qj432yj9a3939lad2hqymrmj8y1w3k0razifk"; depends=[dplyr geozoo gganimate ggforce ggplot2 ggrepel magrittr purrr rlang scales stringr tibble tidyr tourr]; }; ff = derive2 { name="ff"; version="4.0.5"; sha256="0dsh6llfdz04w94xr3yl2b4vkk9g3rwhvfnxcd025v2424krxfls"; depends=[bit]; }; ffbase = derive2 { name="ffbase"; version="0.13.3"; sha256="1dp6lblfq2j7r1b4b8ls47jlx8j27n88d5vp8w116lb8pa01zxmk"; depends=[bit fastmatch ff]; }; - fflr = derive2 { name="fflr"; version="1.9.2"; sha256="0k8jsrq0nznx33bzl4abzs1dk740vqfrzc5g8mx291bv5g519qag"; depends=[httr jsonlite tibble]; }; + fflr = derive2 { name="fflr"; version="2.0.0"; sha256="18bn1k2g3fdyhv1cqdxg5j8xqji3xwv6hw84xnisv33994yw4h87"; depends=[httr jsonlite tibble]; }; ffmanova = derive2 { name="ffmanova"; version="1.1.0"; sha256="0019m9vxnh5yxr5k7zflzyhd533a842cjjkcpqyannshnrbfndvy"; depends=[]; }; ffmetadata = derive2 { name="ffmetadata"; version="1.0.0"; sha256="0gjv5fl3p0kz28c91l4qf34a2685a24l5841ixdg7wivfs5v9npv"; depends=[httr jsonlite]; }; ffp = derive2 { name="ffp"; version="0.1.0"; sha256="11c25lcy5fzchc00cv7r9g92gnb6iffmcylibs1w42245r69bsnh"; depends=[assertthat dplyr forcats ggdist ggplot2 lubridate magrittr mvtnorm NlcOptim pracma purrr rlang scales tibble tidyr usethis vctrs xts]; }; - ffscrapr = derive2 { name="ffscrapr"; version="1.4.6"; sha256="02radzd5bcavbhgy842bgxbp33db87sxpqvxnff46kz6v6xbw7wm"; depends=[cachem checkmate dplyr glue httr jsonlite lifecycle lubridate magrittr memoise nflreadr purrr rappdirs ratelimitr rlang stringr tibble tidyr]; }; + ffscrapr = derive2 { name="ffscrapr"; version="1.4.7"; sha256="1qfclfvz1xa9mamn9rjmwyrrpsj8cr6ri5040g2gfxjag0by5n21"; depends=[cachem checkmate dplyr glue httr jsonlite lifecycle magrittr memoise nflreadr purrr rappdirs ratelimitr rlang stringr tibble tidyr]; }; ffsimulator = derive2 { name="ffsimulator"; version="1.1.0"; sha256="0mzas3hx6nj2q2lidkmrnh3mfz8w0s9r58j7vy39sfaq8h9qqyly"; depends=[checkmate cli data_table ffscrapr glue magrittr nflreadr Rglpk rlang tidytable]; }; ffstream = derive2 { name="ffstream"; version="0.1.6"; sha256="036ikhah4y85khgfmvxwsn3vavvw1is8i9k2lw474wxlh4cxa3kd"; depends=[Rcpp]; }; fftw = derive2 { name="fftw"; version="1.0-6.1"; sha256="1s16r8qr1w85k5i0wfj4gc3cnwqg3yx2nbk9mcfb3j95jx7jphzz"; depends=[]; }; @@ -9362,7 +9388,7 @@ in with self; { freedom = derive2 { name="freedom"; version="1.0.1"; sha256="1mrdl2cqdm2c68lx7lyixgiqw6xzwnx9c8j5q4annhiz107i9i22"; depends=[]; }; freegroup = derive2 { name="freegroup"; version="1.1-0"; sha256="0ssshs2d6l2ip1xx9x581w0cdnd2459a1mh360ybwajkjgak2ci6"; depends=[magic magrittr plyr]; }; freesurfer = derive2 { name="freesurfer"; version="1.6.8"; sha256="0ks6ms5vp38pykcg66w960nmfgq383iprrbbzw5dlx9xnrx4yhbh"; depends=[neurobase R_utils reshape2]; }; - freesurferformats = derive2 { name="freesurferformats"; version="0.1.15"; sha256="092p6za8xzhx7zn1h0a8rw1sss3rdml0pzkgapgyvykqlsr7nmp9"; depends=[pkgfilecache xml2]; }; + freesurferformats = derive2 { name="freesurferformats"; version="0.1.16"; sha256="0aax9dimig3cn8mqnl8xdj9khs7fga08fx7vw9qkwrv4bnls8zvz"; depends=[pkgfilecache rmarkdown xml2]; }; frenchCurve = derive2 { name="frenchCurve"; version="0.1.0"; sha256="1b8lkmhydz4jq8h5p117fwaygbsillzcfx0p7w0ljj8b8v57r6l9"; depends=[sp]; }; frenchdata = derive2 { name="frenchdata"; version="0.2.0"; sha256="13n0phncbxim9ak897hmjw1p7ph5wi3jn2m8hgmm3bywxbxcg1qz"; depends=[assertthat cli dplyr fs httr magrittr purrr readr rlang rvest stringr tibble tidyr]; }; freqdist = derive2 { name="freqdist"; version="0.1"; sha256="1pb45jabv9s3qa7v1isd5wm9b0g9p04q5h18spcaax8397s0d2fv"; depends=[]; }; @@ -9390,7 +9416,7 @@ in with self; { fruclimadapt = derive2 { name="fruclimadapt"; version="0.4.4"; sha256="19siwjjcjh0kh2wpbabgzjwrfgg2al0g7d4z91wdcp3spwx308vk"; depends=[data_table lubridate tidyverse zoo]; }; fs = derive2 { name="fs"; version="1.5.0"; sha256="15rqc3ljmcmgfvadj1j1kq7kvibagxic8sgplhlcdqqxax9idprn"; depends=[]; }; fsMTS = derive2 { name="fsMTS"; version="0.1.5"; sha256="1vxj9wkzpbk44hby4fdyhj72748c65by612kpphs6vmgzmw4y471"; depends=[freqdom glasso lars mpmi randomForestSRC]; }; - fsbrain = derive2 { name="fsbrain"; version="0.5.0"; sha256="0ifaz25s8g53agyjxm252gmav3iqf0h51bnayc05v1fjj8z5khzs"; depends=[data_table fields freesurferformats magick pkgfilecache reshape rgl squash viridis]; }; + fsbrain = derive2 { name="fsbrain"; version="0.5.2"; sha256="1vqj8x6wsaz89dl58nqhmz9vla0vjzdn8gzppkfggb44i2q1xm55"; depends=[data_table fields freesurferformats magick pkgfilecache reshape rgl squash viridis]; }; fscaret = derive2 { name="fscaret"; version="0.9.4.4"; sha256="18fhyfl3f8syyc3g937qx87dmwbv7dray6b97p1s6lnssiv61gsw"; depends=[caret gsubfn hmeasure]; }; fsdaR = derive2 { name="fsdaR"; version="0.4-9"; sha256="1iaqqdwhh29fhq4r64adfrjmsyzq4v60bz9111vkazj4kr45wxxv"; depends=[ggplot2 rJava rrcov]; }; fsia = derive2 { name="fsia"; version="1.1.1"; sha256="0id7cnswrqylgpwjil1zfn89ryrdpl20fim8x1srl8s1hm5bg35r"; depends=[]; }; @@ -9462,9 +9488,10 @@ in with self; { fuzzySim = derive2 { name="fuzzySim"; version="3.0"; sha256="18h0lxzqyp7fzjv7vnyfbwpaxjx15sw0h9l5yq846xzhkza79xxp"; depends=[]; }; fuzzyforest = derive2 { name="fuzzyforest"; version="1.0.8"; sha256="0sb7qia01a5h6p12riq6vdq9likmqb6i949axsxszy5sf1zk50v5"; depends=[doParallel foreach ggplot2 mvtnorm randomForest]; }; fuzzyjoin = derive2 { name="fuzzyjoin"; version="0.1.6"; sha256="0s5rhqz8vih4za3a8k1k7i3gq8hj0w7bqnakw40k6mg87jvyzsj7"; depends=[dplyr geosphere purrr stringdist stringr tibble tidyr]; }; + fuzzyreg = derive2 { name="fuzzyreg"; version="0.5.2"; sha256="1ppgyavkq8nys6fs9is7x08kclaa9g4h04a55bdkk6jjm36if914"; depends=[limSolve quadprog]; }; fuzzywuzzyR = derive2 { name="fuzzywuzzyR"; version="1.0.5"; sha256="1g73xivxyh5fvppccgnxhgar6jsl6zsr2djkg0bhh10i633l56ia"; depends=[R6 reticulate]; }; fwi_fbp = derive2 { name="fwi.fbp"; version="1.7"; sha256="1wk9cr0kk6zkbf111bv87n7b1wwx1qrsbjxydvbjvy8bgz0nfa62"; depends=[]; }; - fwildclusterboot = derive2 { name="fwildclusterboot"; version="0.5"; sha256="1f0ayrfaccv3b831qaydfia1w8w3br00fpgkra3lannh5ql8zch4"; depends=[collapse dqrng dreamerr Formula generics gtools Matrix Matrix_utils Rcpp RcppEigen]; }; + fwildclusterboot = derive2 { name="fwildclusterboot"; version="0.5.1"; sha256="0qf5bk6fl4x5fdkld63dsybi6929z5pg98valradcg01qm7zkqrp"; depends=[collapse dqrng dreamerr Formula generics gtools Matrix Matrix_utils Rcpp RcppEigen]; }; fwsim = derive2 { name="fwsim"; version="0.3.4"; sha256="0fy87c1x5hihfcppv1pvk3b0pwl6ygqpka40x55gbpkgssdigb1l"; depends=[Rcpp]; }; fxTWAPLS = derive2 { name="fxTWAPLS"; version="0.0.7"; sha256="0pfp64qi0mnxsf0pmgi5pafalzp997q6wx9fhkk04llzcj9ppdl8"; depends=[doFuture foreach future geosphere ggplot2 JOPS MASS progressr]; }; fxregime = derive2 { name="fxregime"; version="1.0-4"; sha256="0ml1q0xp90jfng6a60pfkp6j7wajk6pz4p4wm08rfqikgsdvp0m4"; depends=[car sandwich strucchange zoo]; }; @@ -9493,7 +9520,6 @@ in with self; { gTests = derive2 { name="gTests"; version="0.2"; sha256="1h1sd8mrzcniq7rx7frdlxwpnsn8lifng1x99fqq703hs3znl1yq"; depends=[ade4]; }; gWQS = derive2 { name="gWQS"; version="3.0.4"; sha256="1yhbcmznii3n2sbw0z2rw1sdn0zlk5v2z7ww3nl7rn005g4q04hi"; depends=[broom cowplot dplyr future future_apply ggplot2 ggrepel kableExtra knitr MASS Matrix nnet plotROC pscl reshape2 rlist]; }; gWidgets2 = derive2 { name="gWidgets2"; version="1.0-8"; sha256="0p6lav6lrwgsw29sl8vshzgi8j2smcavx047qq31s9bsn2dcw58n"; depends=[digest]; }; - gWidgets2RGtk2 = derive2 { name="gWidgets2RGtk2"; version="1.0-7"; sha256="14c933j0wj3lb5da75zxg3w3mfqh0nqk8rczbi4dnqd8sna6jks9"; depends=[gWidgets2 memoise RGtk2]; }; gWidgets2tcltk = derive2 { name="gWidgets2tcltk"; version="1.0-6"; sha256="0arh0yxx63m4df1ccrv0q3vkjncwv3ink8vkalp6ashi2932yfma"; depends=[digest gWidgets2 memoise]; }; gadget2 = derive2 { name="gadget2"; version="2.3.7"; sha256="1p7jpwy65gdl6kli1h2m9yi5p5ah1vm23xs03sm9l42fcbn7ffdw"; depends=[]; }; gafit = derive2 { name="gafit"; version="0.5.1"; sha256="160z3cv22prf7118447dla9g1gimwkfad8zdil3fg8n4l22rk51a"; depends=[]; }; @@ -9521,9 +9547,9 @@ in with self; { gamlss_add = derive2 { name="gamlss.add"; version="5.1-6"; sha256="0g80bn0nszs2nmka6dypyvqnsgxp7mzhf5nd82n5x4jm3ca3dbdj"; depends=[gamlss gamlss_dist mgcv nnet rpart]; }; gamlss_cens = derive2 { name="gamlss.cens"; version="5.0-1"; sha256="1s83dgifidvc6cbrqirwlvwfzg08mlhmxxiqkbmnsy09i5j9fzd3"; depends=[gamlss gamlss_dist survival]; }; gamlss_countKinf = derive2 { name="gamlss.countKinf"; version="3.5.1"; sha256="1xalp909gxxhyhh4chlr1ssyfhydhw1w3szzbynajji98576zaqv"; depends=[gamlss gamlss_dist]; }; - gamlss_data = derive2 { name="gamlss.data"; version="6.0-1"; sha256="1cjb2n5i5mnhmb5qbqycdbfg65j7nxb9s74yihqs9kpa39byrzcq"; depends=[]; }; + gamlss_data = derive2 { name="gamlss.data"; version="6.0-2"; sha256="07mpdl4h9rwmnpl9jmsn6ig8ji11an6pyjfsvg62h2alapwbdcyv"; depends=[]; }; gamlss_demo = derive2 { name="gamlss.demo"; version="4.3-3"; sha256="01p6abppwbnh2a2ks1g08z4iwq2fxf125y9s4qzssybsn76a3gf3"; depends=[gamlss_dist gamlss_tr rpanel]; }; - gamlss_dist = derive2 { name="gamlss.dist"; version="5.3-2"; sha256="1lyf2rvkplywgyhcni93k52z3b89vv86yrgl38dx3ln3436r5ahc"; depends=[MASS]; }; + gamlss_dist = derive2 { name="gamlss.dist"; version="6.0-1"; sha256="0m41n7zf7m0mh1w9ql70wqnzsf2f013ql699im7zmp6fdggb8qxm"; depends=[MASS]; }; gamlss_inf = derive2 { name="gamlss.inf"; version="1.0-1"; sha256="0m091zxjm5wvhm6mzbpzkr275n3qnlb3v4099k0a1jymahk4w7vr"; depends=[gamlss gamlss_dist]; }; gamlss_lasso = derive2 { name="gamlss.lasso"; version="1.0-1"; sha256="03c8k6hl23ag98dihznfz1h0qc3pwxbnpv58pvmx3xbb3lipfjfb"; depends=[gamlss glmnet lars Matrix]; }; gamlss_mx = derive2 { name="gamlss.mx"; version="6.0-0"; sha256="0b06nb6nq36ay0p5z57j5d4hrly5917wcsal7986mp1270iwnpip"; depends=[gamlss gamlss_dist nnet]; }; @@ -9631,7 +9657,7 @@ in with self; { gender = derive2 { name="gender"; version="0.6.0"; sha256="18xiaif6iiwjvnjk611sfz7qi5r7mbi73dcrgrkzkjly8zygp42k"; depends=[dplyr httr jsonlite remotes]; }; genderBR = derive2 { name="genderBR"; version="1.1.2"; sha256="19n3d6ps0wswq1bxgfqifq26svqf8q696im14wfglrl731mr0qbm"; depends=[dplyr httr jsonlite magrittr purrr tibble]; }; gendist = derive2 { name="gendist"; version="2.0"; sha256="0rs0sn1sb6j3pk2xncix04a093awlm2nw70g0rjhr7dlzmigspgb"; depends=[]; }; - geneExpressionFromGEO = derive2 { name="geneExpressionFromGEO"; version="0.6"; sha256="0hcq92lwvajh96afg65npldfahdcmslkvxlzam8svfbhkp05mqyw"; depends=[annotate Biobase GEOquery xml2]; }; + geneExpressionFromGEO = derive2 { name="geneExpressionFromGEO"; version="0.8"; sha256="018f85kj6n5r74r4x9s5444s1c4xan2blpzhwz7yvchis0r4p9y4"; depends=[annotate Biobase BiocManager GEOquery markdown R_utils xml2]; }; geneHummus = derive2 { name="geneHummus"; version="1.0.11"; sha256="1m6yyjsvmn3w87cw4da8js5vi74k5y739gxdx1yscx1n50bc3m34"; depends=[curl dplyr httr rentrez stringr]; }; geneListPie = derive2 { name="geneListPie"; version="1.0"; sha256="0z2gawfzhm05dafj4zlj6ifmf0dy7p1hrpa59lzxrnrc0wr6laji"; depends=[]; }; geneNetBP = derive2 { name="geneNetBP"; version="2.0.1"; sha256="0sp1chyln5k2zsq7cdhvrqxwr2nhrll1pdl1l5g6fd4gjl2m1nwk"; depends=[bnlearn ggm gRain graph igraph Rgraphviz scales]; }; @@ -9640,7 +9666,7 @@ in with self; { genemodel = derive2 { name="genemodel"; version="1.1.0"; sha256="1x6n6k9ifv2swhyrghvm6fsz5vh85cdik8225175i9msvmkh928n"; depends=[stringr]; }; genepi = derive2 { name="genepi"; version="1.0.1"; sha256="1whhdlq9p8gmygv7464hvfz6dhm65gqq1dqls6hgpmw822zxgbd5"; depends=[]; }; genepop = derive2 { name="genepop"; version="1.1.7"; sha256="0b36nspq3kkad52k0viw1pdsf7h9h5ivi0ix7zg8i0z7vkhnm0cy"; depends=[Rcpp RcppProgress stringr]; }; - generalCorr = derive2 { name="generalCorr"; version="1.1.9"; sha256="1x0nh1z9vf68vyvdrv100rrpyabb2iwxn7p369zx950i47qy9a45"; depends=[lattice meboot np psych xtable]; }; + generalCorr = derive2 { name="generalCorr"; version="1.2.0"; sha256="1zz6lzhryi5vryvbnpzz050y47lxxcqcv8wgrwk6nfk1i3xajkkz"; depends=[lattice meboot np psych xtable]; }; generalhoslem = derive2 { name="generalhoslem"; version="1.3.4"; sha256="0fmfhmdb16gf3v9h50vif4f3f6bm03qq7wplnmzyxa80jb60fcc0"; depends=[MASS reshape]; }; generator = derive2 { name="generator"; version="0.1.0"; sha256="0xjvnmnpdms8rrxxcz6pd8w4rnbv3ghzqv4m63zxia2l98x7z4rf"; depends=[]; }; generics = derive2 { name="generics"; version="0.1.1"; sha256="04hrn6g5m5vi3znrcha3jw2q16lnmm3ygx2jl5aqiahg3azqwix2"; depends=[]; }; @@ -9716,7 +9742,7 @@ in with self; { geonetwork = derive2 { name="geonetwork"; version="0.4.1"; sha256="04vf39hxl1a2kbgqc054xg9w6hbd3fwag6sy0j8a9agrd5wgks7h"; depends=[geosphere igraph rgdal sf sp]; }; geophys = derive2 { name="geophys"; version="1.4-1"; sha256="1s64sbr0chv0z2vaw059khfkv8iga1kr6428kkglgafq5x2d6h3q"; depends=[cluster GEOmap RFOC RPMG RSEIS]; }; georob = derive2 { name="georob"; version="0.3-14"; sha256="1an5mxq49kv038dplm9h6ngvsz71lkvjm34i7jjsdpaz3cyflp7v"; depends=[abind constrainedKriging fields lmtest nleqslv nlme quantreg RandomFields robustbase snowfall sp]; }; - geos = derive2 { name="geos"; version="0.1.2"; sha256="04ha875a416fdw2ki0iilal2blnblf0hdda5n5msa5gi70ycd3db"; depends=[libgeos wk]; }; + geos = derive2 { name="geos"; version="0.1.3"; sha256="1adm5wvnxvj6hl1wkgkfl862nxddv2x11x7nnp8xwi0dbjmz0mnf"; depends=[libgeos wk]; }; geosapi = derive2 { name="geosapi"; version="0.5-1"; sha256="0ny1nzhfwj9l3gyzls3ksikmjzx06a3420nb3l6b2711v9zymv45"; depends=[httr keyring openssl R6 XML]; }; geoscale = derive2 { name="geoscale"; version="2.0"; sha256="0gisds0in32xhw54fxfyxvwxgrfjs871wmqf6l915nr896rlx0bm"; depends=[]; }; geosed = derive2 { name="geosed"; version="0.1.1"; sha256="07j4q6sgrf83h2gi2j5qap5rifz8gimdacd3b7ld1p3b6ai6kv3r"; depends=[]; }; @@ -9737,7 +9763,7 @@ in with self; { gepaf = derive2 { name="gepaf"; version="0.1.1"; sha256="0n36w40jrq3qkgmhz9wrnhp6fczw7bm96g950sa4nq33872xhfgm"; depends=[bitops]; }; gerbil = derive2 { name="gerbil"; version="0.1.5"; sha256="1rvf7z7zj04p2faj41fxxjs20bd3ghr6fbzkkapcx48fr4j9skj2"; depends=[DescTools lattice MASS mvtnorm openxlsx pbapply truncnorm]; }; germinationmetrics = derive2 { name="germinationmetrics"; version="0.1.5"; sha256="1gazx0k4nhb9xsyqi0zxdzg9a0kfvf7g1gka7lgaj2f3bpyk0gd3"; depends=[broom data_table ggplot2 ggrepel mathjaxr minpack_lm plyr Rdpack]; }; - gert = derive2 { name="gert"; version="1.4.2"; sha256="01h6bpqs66c25d7mria5s2iskddx6jrds6p49larsxdjgi2zbrm1"; depends=[askpass credentials openssl rstudioapi sys zip]; }; + gert = derive2 { name="gert"; version="1.4.3"; sha256="06g3gy4260y4f43zgahamckisjs8dvl06rb0kyinrwlm675dqppm"; depends=[askpass credentials openssl rstudioapi sys zip]; }; gesca = derive2 { name="gesca"; version="1.0.4"; sha256="1ndn8wgp22pr017x6v7jw8jy4gd06x8110qa860hw8i6pn47wfwv"; depends=[]; }; gesisdata = derive2 { name="gesisdata"; version="0.1.0"; sha256="02xjpw41gm3778lj01kcwjx0lr1i95a0wlrfvs0r5xlajq13jr67"; depends=[dplyr magrittr rio RSelenium stringr]; }; gesso = derive2 { name="gesso"; version="1.0.1"; sha256="0s9vlh47v4dz8dwq5v6j7vbcs01g701ci1qkb0b26m7zksb4ra58"; depends=[BH bigmemory dplyr Matrix Rcpp RcppEigen RcppThread]; }; @@ -9874,6 +9900,7 @@ in with self; { ggpmisc = derive2 { name="ggpmisc"; version="0.4.4"; sha256="01dnr2a33zmgi0gjsxlcz4hp68b18xsi8z1lkhgcla5im59qf9xi"; depends=[dplyr generics ggplot2 ggpp lmodel2 lubridate MASS plyr polynom quantreg rlang scales splus2R tibble]; }; ggpointdensity = derive2 { name="ggpointdensity"; version="0.1.0"; sha256="0c9a14j3b0hvamqylhzldw2hjdxmfbllwahjkf3gg2rw337ld9iy"; depends=[ggplot2]; }; ggpol = derive2 { name="ggpol"; version="0.0.7"; sha256="11xr26kwmkjjb51wm44ydv0vcinc6k6faqwx4s2faj4iwidlys1m"; depends=[dplyr ggplot2 glue gtable plyr rlang tibble]; }; + ggpolar = derive2 { name="ggpolar"; version="0.2.0"; sha256="0i795635yziz1qssrvnvpbar5fdp4vxfmzaaxdlw6cccf3qfnnvq"; depends=[ggplot2]; }; ggpolypath = derive2 { name="ggpolypath"; version="0.1.0"; sha256="0g9zfal3vqcx16fi4abxm6l5sam475lk1f6bdik487wc2v0dkq83"; depends=[ggplot2]; }; ggpp = derive2 { name="ggpp"; version="0.4.2"; sha256="0m2wq9kqlxqxlzyx9fd0c4iw6qb7kpjrq7fqqa2kvwyj79vx6ahj"; depends=[dplyr ggplot2 glue gridExtra lubridate magrittr MASS polynom rlang scales stringr tibble xts zoo]; }; ggprism = derive2 { name="ggprism"; version="1.0.3"; sha256="09dh0r8r5s61i5dbk6rswajc2vm7k8wvlqyvzq8wr160676lycjp"; depends=[digest ggplot2 glue gtable rlang scales tibble]; }; @@ -9909,6 +9936,7 @@ in with self; { ggstream = derive2 { name="ggstream"; version="0.1.0"; sha256="0d6g5916mfrg2srcqjhlpm4acp4g16vq9ks4x37yzkpr34vi5x7j"; depends=[dplyr forcats ggplot2 magrittr purrr tidyr]; }; ggstudent = derive2 { name="ggstudent"; version="0.1.1-1"; sha256="0qs27b4lksaaaspavkycbzf8cfjxjli7xrfjby71sl0lca3fwm1g"; depends=[dplyr ggplot2]; }; ggswissmaps = derive2 { name="ggswissmaps"; version="0.1.1"; sha256="0is48x6k2p5dgj9q4km0dv33a9pcpfhlai9vz295y3acpyrkmnn4"; depends=[ggplot2]; }; + ggtea = derive2 { name="ggtea"; version="0.1.1"; sha256="04g8g17ziw13rxjzkvgy5yd0z15ypxk0b8fq2y1vk8acsqr2dv11"; depends=[ggplot2]; }; ggtern = derive2 { name="ggtern"; version="3.3.5"; sha256="15hhn8msy0l8zbq8ms0zvg1iajn1c28gd77v3hp6dvwwsla8zzbd"; depends=[compositions ggplot2 gridExtra gtable hexbin latex2exp lattice MASS plyr proto scales]; }; ggtext = derive2 { name="ggtext"; version="0.1.1"; sha256="0n19dlcys8v7myfyckr6dnq0kx79k3sbh8nwx1jsx8pgzfbi8a2b"; depends=[ggplot2 gridtext rlang scales]; }; ggthemes = derive2 { name="ggthemes"; version="4.2.4"; sha256="0rw5f6axyz1pqn6qx9jwm38hjzn8bqs1nfjkvm96z3xnyn61cdbv"; depends=[ggplot2 purrr scales stringr tibble]; }; @@ -10013,7 +10041,7 @@ in with self; { glow = derive2 { name="glow"; version="0.10.1"; sha256="1br29hy5j30k5q4xk1dglxlhqalhm76hnx8xg73v6whcg5j11392"; depends=[ggplot2 R6 Rcpp RcppEigen RcppParallel scales]; }; glpkAPI = derive2 { name="glpkAPI"; version="1.3.3"; sha256="07bksiqmq2n7ki3f3sxph4v44k7q2b0d88jwjgfxzdn33i65wqyq"; depends=[]; }; glrt = derive2 { name="glrt"; version="2.0"; sha256="0p2b0digndvnn396ynv56cdg436n3ll7pxkb81rs3dhwbyqyc948"; depends=[survival]; }; - glue = derive2 { name="glue"; version="1.4.2"; sha256="1bgpirdvjrf0da734clrixawvpdap4lpda4g89vais96589m8wwz"; depends=[]; }; + glue = derive2 { name="glue"; version="1.5.0"; sha256="1wjar579m46j1jnch34h7976sc1qbj6hzdyz5jm16nz1iw6z47jv"; depends=[]; }; gluedown = derive2 { name="gluedown"; version="1.0.4"; sha256="1rvaac27kc4mppmw9kdwjaqsa7lwfzwffv63c8cky1z0xrsc5zz1"; depends=[glue magrittr]; }; gluvarpro = derive2 { name="gluvarpro"; version="4.0"; sha256="09l9yincr1k5j9wnj3zvfzsffjh3r54aa8fn0ik8vhlbq13ag8kp"; depends=[ggplot2 gridExtra pracma scales tidyr zoo]; }; glvmfit = derive2 { name="glvmfit"; version="0.1.0"; sha256="1nb34dm4m0nq7cr9f9jsacnk0xjv451m419sdwbk11ykpqkh9cdk"; depends=[]; }; @@ -10067,6 +10095,7 @@ in with self; { googlePolylines = derive2 { name="googlePolylines"; version="0.8.2"; sha256="1z8ml0xiyqy1ygairgs9w10q4a7msd6gkzjv7kf6r8xv4bpc02pd"; depends=[BH Rcpp]; }; googlePrintr = derive2 { name="googlePrintr"; version="0.0.1"; sha256="19rm78x8qd61ilc6h1kn3dw63m6dfsckqkd3n76krvi0akgl72w5"; depends=[googleAuthR httr jsonlite]; }; googlePublicData = derive2 { name="googlePublicData"; version="0.16.1"; sha256="15hyslpqvncg21q581h061rfyg99y8lavqw1x8hzl7xzd49bn9r5"; depends=[readxl XML]; }; + googlePubsubR = derive2 { name="googlePubsubR"; version="0.0.1"; sha256="0fvxyyh1i14353sk3qy3xs7sc75fjkspmb1yl2b83vzsai8zgz10"; depends=[cli googleAuthR magrittr]; }; googleTagManageR = derive2 { name="googleTagManageR"; version="0.1.6"; sha256="1y2avhgvzrpmpyx341di8ml2pdj10y8sdhn7zwjpxgzrxkmf4xxi"; depends=[assertthat dplyr future googleAuthR httr jsonlite purrr]; }; googleVis = derive2 { name="googleVis"; version="0.6.10"; sha256="0jjqlcxfbpkl2kdpp8vr27yi178ryg62yy7rjafzda1npg010f3x"; depends=[jsonlite]; }; googledrive = derive2 { name="googledrive"; version="2.0.0"; sha256="09jsiknzyfgxd0nzdr3wrrjw24allch2x74h96qg8vh8dad4cp30"; depends=[cli gargle glue httr jsonlite lifecycle magrittr pillar purrr rlang tibble uuid vctrs withr]; }; @@ -10096,7 +10125,7 @@ in with self; { gppm = derive2 { name="gppm"; version="0.2.0"; sha256="1n9is3xj52lsck2fiy9j320p2ca6ib36s251i7g3iz99a77b0ahh"; depends=[ggplot2 ggthemes MASS mvtnorm Rcpp rstan]; }; gprofiler2 = derive2 { name="gprofiler2"; version="0.2.1"; sha256="0r0h34b35xzgd9rh55yndn0anxy0z45zdlqa6qfmpn91b6v1bb1g"; depends=[crosstalk dplyr ggplot2 gridExtra jsonlite plotly RCurl tidyr viridisLite]; }; gptk = derive2 { name="gptk"; version="1.08"; sha256="0fk6c8f8fni4y2n2cbfwywlfyz74xlb8lx25wajsxr2v4x74pa7l"; depends=[fields Matrix]; }; - gpx = derive2 { name="gpx"; version="1.0.1"; sha256="0p7fcqswd9swsscf0pjza7jmvwc25k2hrbdhb42hy90q28rdpmqm"; depends=[lubridate rvest xml2]; }; + gpx = derive2 { name="gpx"; version="1.1.0"; sha256="0x9b3mnbrim690l4wnyzk47bgywvnw4h4l8qznnx7zkpqib2hn5i"; depends=[lubridate rvest xml2]; }; gqlr = derive2 { name="gqlr"; version="0.0.2"; sha256="0gzhqyrbnz3qjzkr4slryrlfhlaxm474y9fahlj0sb0hvcx68pxj"; depends=[graphql jsonlite magrittr pryr R6]; }; gquad = derive2 { name="gquad"; version="2.1-1"; sha256="19k7cqp2j5vb6m9hxdm951wfjh6nsswb64pdz9g93ypcqrg02wa4"; depends=[ape seqinr]; }; grImport = derive2 { name="grImport"; version="0.9-5"; sha256="0pbzc45wgp0cpycnw0bzn65ckdszzay0zrp7c7ssxdkifp8bai3a"; depends=[XML]; }; @@ -10214,6 +10243,7 @@ in with self; { gss = derive2 { name="gss"; version="2.2-3"; sha256="0jr45lkpcndg5nynjsfnxn1wwkh4gkhsgv4hlvw6jn2frw0n8c14"; depends=[]; }; gstar = derive2 { name="gstar"; version="0.1.0"; sha256="1582f7jcphb32j3wdc345qa5sgm2xyimlc6r5r5jay7ca5ll8c98"; depends=[dplyr ggplot2 reshape2 xts zoo]; }; gstat = derive2 { name="gstat"; version="2.0-8"; sha256="1s380qbvygccjhwpk4bmhdhdsbz0h8f6b9ghdalpk4x36n19xjsp"; depends=[FNN lattice sp spacetime zoo]; }; + gstsm = derive2 { name="gstsm"; version="0.0.1"; sha256="14vdgrxxgz18l2k9qi4dg2v6xp3cbc3171iayfzyg4d8ay0094dh"; depends=[digest]; }; gsubfn = derive2 { name="gsubfn"; version="0.7"; sha256="00j6b8b6xsx6v370h220x233rpk6asca78165y3d48jpwvwisdc9"; depends=[proto]; }; gsw = derive2 { name="gsw"; version="1.0-6"; sha256="1sqxxbghsii5lph4r9j6w752zd95xxi2hwfbz6d7jxsplwyyfz0l"; depends=[]; }; gsynth = derive2 { name="gsynth"; version="1.2.1"; sha256="1a4s8ghxc5zw295ys8hp22nx93gc1vyakn7r1dcq3ghikh02nzaa"; depends=[abind doParallel doRNG foreach future GGally ggplot2 lfe MASS mvtnorm Rcpp RcppArmadillo]; }; @@ -10224,7 +10254,7 @@ in with self; { gtcorr = derive2 { name="gtcorr"; version="0.2-1"; sha256="1n56zmyv58jwr95p453jb86j82pdnq57gfc8m15jndjc9p31zl0m"; depends=[]; }; gte = derive2 { name="gte"; version="1.2-2"; sha256="1x528iakyjhh4j92cgm6fr49a3rdi4cqy28qhsfr2dwvxzxchl6h"; depends=[survival]; }; gtfs2gps = derive2 { name="gtfs2gps"; version="1.5-4"; sha256="0hqqi4gm6zbrys0yd0ayyas2pxfx4r98fi45rfmdzffrx8qd0p9r"; depends=[data_table furrr future gtfsio lwgeom magrittr pbapply progressr raster Rcpp readr rgdal rgeos sf sfheaders sp units]; }; - gtfsio = derive2 { name="gtfsio"; version="0.2.0"; sha256="1mvz89hxlx6darqg84ly7218d3p7i4gchcgy031p12qgxs7ydxq4"; depends=[data_table zip]; }; + gtfsio = derive2 { name="gtfsio"; version="1.0.0"; sha256="05210ii5b754ryk296knqm3sf9yi5xwvcrq6rb9w71njqgvykwcj"; depends=[data_table zip]; }; gtfsrouter = derive2 { name="gtfsrouter"; version="0.0.5"; sha256="0yxgc4pi0g2wqswvwba0ij263i8b8p6wgsy6hbvklq0gim616shi"; depends=[cli data_table geodist Rcpp]; }; gtfstools = derive2 { name="gtfstools"; version="0.1.0"; sha256="02v455r1a9rf2hqpw0a547jvbx6hrb26jwhjx68spmh9rrc5zpkz"; depends=[checkmate data_table sf sfheaders units zip]; }; gtheory = derive2 { name="gtheory"; version="0.1.2"; sha256="1xc1jl69z5csalqk3hx83s53awcl1fjq6p0x2pczhs7dsvwd6lks"; depends=[lme4]; }; @@ -10241,7 +10271,7 @@ in with self; { gumboot = derive2 { name="gumboot"; version="1.0.0"; sha256="0c31rxkq08wzycwiwii7q166pzwfbdg35259rymwy0g38pnjnjp6"; depends=[dplyr ggplot2 hydroGOF lubridate ncdf4 reshape2 stringr]; }; gunit = derive2 { name="gunit"; version="1.0.0"; sha256="0vmm47f21n9f334aj38gzrmv1c4sp76njk95ld9gv6fcfxgsipyh"; depends=[magrittr stringr tibble units]; }; gunsales = derive2 { name="gunsales"; version="0.1.2"; sha256="02vz16lhym72vvf48yai1g371wygdlmi63a6ylc147l0b69jgw31"; depends=[data_table dplyr ggplot2 seasonal x13binary zoo]; }; - gustave = derive2 { name="gustave"; version="0.4.2"; sha256="1pg8lpsc9n6zjq8gidljs5mmdbmkax5kpcc7m3yhgs518zp32gki"; depends=[Matrix]; }; + gustave = derive2 { name="gustave"; version="0.4.3"; sha256="08az0j9cfalf2jf6qhsxhml3ranvacan85xp4d6zqdrgly00qsr2"; depends=[Matrix]; }; gutenbergr = derive2 { name="gutenbergr"; version="0.2.1"; sha256="0rsk583x4i1ac6rbxr5f5cmczr4525bkv20jw7777n8fwn91zvyr"; depends=[dplyr lazyeval purrr readr stringr urltools]; }; gvc = derive2 { name="gvc"; version="6.0.0"; sha256="0sn2rhab39biqbmab7z12wkyar5h44hzdvds94ybyb1dgcsa3sfl"; depends=[decompr diagonals]; }; gvcR = derive2 { name="gvcR"; version="0.1.0"; sha256="0r54924b9a65k11p8y3p7jxbvmpb7s7vs87v65hhl98gxacj5hk8"; depends=[dplyr eda4treeR lme4 magrittr]; }; @@ -10333,7 +10363,7 @@ in with self; { healthyR = derive2 { name="healthyR"; version="0.1.6"; sha256="1px9c0i0qf0b85nbwjv0cccy2viqvi6c2pd1vx3s6yncj3vx3a5x"; depends=[cowplot dplyr ggplot2 ggrepel lifecycle lubridate magrittr plotly purrr rlang scales sqldf stringr tibble tidyr timetk writexl]; }; healthyR_ai = derive2 { name="healthyR.ai"; version="0.0.2"; sha256="1gvqanwzdimp093yvvrf2f542n3jgz1wah53bgsl954bd3vp4yaz"; depends=[broom dplyr forcats ggplot2 ggrepel h2o magrittr parsnip purrr recipes rlang rsample tibble tidyr timetk]; }; healthyR_data = derive2 { name="healthyR.data"; version="1.0.1"; sha256="18b7aqdy9a0ldf2ib2d0a07k6bfmgdp61y8hl8yl19v35nqj6dvh"; depends=[]; }; - healthyR_ts = derive2 { name="healthyR.ts"; version="0.1.4"; sha256="0ggksxsaawd6zpfhhaic99yrl0g2w81nmm147qldwsshd252xrym"; depends=[cowplot dplyr earth forcats ggplot2 lubridate magrittr modeltime parsnip plotly purrr recipes rlang stringi tibble tidyquant tidyr timetk workflowsets]; }; + healthyR_ts = derive2 { name="healthyR.ts"; version="0.1.5"; sha256="00pyqy3qzmg440fx91bk9yczdn0fikdy50dq2wlzzd5h83i6bwx4"; depends=[cowplot dplyr earth forcats ggplot2 lubridate magrittr modeltime parsnip plotly purrr recipes rlang stringi tibble tidyquant tidyr timetk workflowsets]; }; healthyverse = derive2 { name="healthyverse"; version="1.0.1"; sha256="088vf0va382341jri9y8p5ygdz76jv3fnjf6y0ldf535grifb3dc"; depends=[cli crayon dplyr healthyR healthyR_ai healthyR_data healthyR_ts magrittr purrr rlang rstudioapi tibble]; }; heapsofpapers = derive2 { name="heapsofpapers"; version="0.1.0"; sha256="1b88ff4j6rh0qif43iyb12wipkkjmp5qx33qfzgffr5m54df4kfy"; depends=[aws_s3 curl dplyr fs magrittr rlang scales]; }; heatex = derive2 { name="heatex"; version="1.0"; sha256="0c7bxblq24m80yi24gmrqqlcw8jh0lb749adsh51yr6nzpap6i9n"; depends=[]; }; @@ -10364,6 +10394,7 @@ in with self; { hero = derive2 { name="hero"; version="0.4.7"; sha256="129v2pjbxm5aalr5lfx0kh20rhwksnb80pc459pxg0xkwxvy1l3d"; depends=[fields Matrix optimx pbapply rgeos sp]; }; hesim = derive2 { name="hesim"; version="0.5.1"; sha256="0w79ka88bafkcs7bjsyl7z2v44cd4xjv3xqyk764jamzfcfhanzq"; depends=[data_table flexsurv ggplot2 MASS msm R6 Rcpp RcppArmadillo survival]; }; hetGP = derive2 { name="hetGP"; version="1.1.4"; sha256="1nm4kkg0jwlp21flviiw187jih4y1s6lqn3j0f2s1h81rh1vvvzf"; depends=[DiceDesign MASS Rcpp]; }; + hetsurr = derive2 { name="hetsurr"; version="1.0"; sha256="1086lqxg6s5a0qxmd29bp3ninr4jzfdp3m6fsn9sfl7bagvrs5wy"; depends=[Rsurrogate]; }; hett = derive2 { name="hett"; version="0.3-3"; sha256="0i7q28nc67m62vi1ipfg035yqjh691fb1mp33dp1b68g5wjysphh"; depends=[lattice MASS]; }; hettreatreg = derive2 { name="hettreatreg"; version="0.1.0"; sha256="092xd2yndg5n5shxmcyn2gh6a6w1i1497cvj009ih3ax8hk3crf0"; depends=[]; }; hettx = derive2 { name="hettx"; version="0.1.1"; sha256="0zfxg88l83pzj37c5khpv4vi0v28fdnp0p8yz39scm8d8lya1dkm"; depends=[doParallel dplyr foreach formula_tools MASS moments mvtnorm plyr purrr quantreg tidyverse]; }; @@ -10394,7 +10425,7 @@ in with self; { hierarchicalDS = derive2 { name="hierarchicalDS"; version="3.0"; sha256="16d6l3y21nhynfjk4swp3pnjr6vhcxq369djgxz907zsjby35gkz"; depends=[coda ggplot2 Matrix mc2d MCMCpack mvtnorm rgeos truncnorm xtable]; }; hierarchicalSets = derive2 { name="hierarchicalSets"; version="1.0.2"; sha256="0m5mnx1zmiscj0k1gnljr7fla4y1qhysi32a8q9jlah2q7grk7x9"; depends=[ggdendro ggplot2 gtable MASS Matrix RColorBrewer Rcpp scales]; }; hierband = derive2 { name="hierband"; version="1.0"; sha256="0d95hrgkd8b5sww3wsgs6v9zg9pm71ick8x8kj8d6vyib350h6yn"; depends=[]; }; - hierbase = derive2 { name="hierbase"; version="0.1.1"; sha256="0w75b3r50w54d3h2c8kam3rnl4zpx5lwfn5rmc927bxgk0f0s3ma"; depends=[glmnet hdi SIHR]; }; + hierbase = derive2 { name="hierbase"; version="0.1.2"; sha256="1rsyjlwa8x5n83ymwv7qm373k3y7jfp64g717xd1jmn9vrmm052b"; depends=[glmnet hdi SIHR]; }; hierfstat = derive2 { name="hierfstat"; version="0.5-7"; sha256="0dp8k1z5a8gqnax99y1hwfvxilzf4n2i751zr0z6ihrzirsvb3m3"; depends=[ade4 adegenet gaston gtools]; }; hiertest = derive2 { name="hiertest"; version="1.1"; sha256="17maf1w4vkqknxff3f00fzv136j3dbbigyzl4vq4sln9j27w10r3"; depends=[]; }; highD2pop = derive2 { name="highD2pop"; version="1.0"; sha256="1s4v6m2d3vzvxsgmjzczv1zj3kv3ygvv6gbkkbjwsdhkvc1rdmf0"; depends=[fastclime]; }; @@ -10423,7 +10454,7 @@ in with self; { hint = derive2 { name="hint"; version="0.1-1"; sha256="1n18j2hcb1qynhsln10nzryi20l5aqhr7i1aanww10y5dz573zi3"; depends=[]; }; hiphop = derive2 { name="hiphop"; version="0.0.1"; sha256="0k071kxf04b95f3z5y2h9dhnqrvzwgyhi3q26ghn3s76c155f1k1"; depends=[]; }; hipread = derive2 { name="hipread"; version="0.2.2"; sha256="1y51yif2spl6brqjvb20k9r6xwkr5f6brv08qcl4g9xg561yngff"; depends=[BH R6 Rcpp rlang tibble]; }; - hisse = derive2 { name="hisse"; version="1.9.19"; sha256="00b36r1aqbjajzinka4bbzf99bn7cf66i56z8da1cxlh7gqdx05f"; depends=[ape data_table deSolve diversitree GenSA nloptr phytools plotrix subplex]; }; + hisse = derive2 { name="hisse"; version="2.1.5"; sha256="0mbh72hy1fjxg2j7sqlxi88jxfqad1cbxpg7n337s1ahnshj0bs0"; depends=[ape corHMM data_table deSolve diversitree geiger GenSA igraph nloptr paleotree phangorn phytools plotrix subplex TreeSim]; }; histmdl = derive2 { name="histmdl"; version="0.7-1"; sha256="0k6l3pfjzlgpxv55vy8dg4sl8zhh0460xcfszwp2k9sbzanwaamp"; depends=[]; }; histogram = derive2 { name="histogram"; version="0.0-25"; sha256="0yymc7fw4qkbigr8jiw2nzjyrw0ikkipz62pdn3bpz1f7nb7mi93"; depends=[]; }; historydata = derive2 { name="historydata"; version="0.1"; sha256="1h69x3iig542d43p9zm8x83p4dq48iwsw606j4fndnqhx99vzkw6"; depends=[]; }; @@ -10462,6 +10493,7 @@ in with self; { homologene = derive2 { name="homologene"; version="1.4.68.19.3.27"; sha256="0d7wxisk0vqk1n165v1i19bc02zv78h5r5d3jqai5y6nkmwn01sh"; depends=[dplyr magrittr purrr R_utils readr]; }; homomorpheR = derive2 { name="homomorpheR"; version="0.2-2"; sha256="1iahq16nswlc3b87598206xdp24bg9v8acyjp1jivybl3fr4k3pq"; depends=[gmp R6 sodium]; }; homtest = derive2 { name="homtest"; version="1.0-5"; sha256="1lnqlg3dwq174ic6dbjllysw5fjy5kvvgbl6gvabjmcs66z27fp0"; depends=[]; }; + hoopR = derive2 { name="hoopR"; version="1.5.0"; sha256="1ndw76a733q225r67w6qxhkbbz5f4bll7bxfl3psy58z60qg02dh"; depends=[cli data_table dplyr furrr future glue janitor jsonlite magrittr progressr Rcpp RcppParallel rlang rvest stringr tidyr usethis]; }; hopbyhop = derive2 { name="hopbyhop"; version="3.41"; sha256="1dh502mjrk9dlqikn0ak4gh2dw9nrnp3zrz8j1xwa9cjn37al2wh"; depends=[ggplot2 pastecs]; }; hopit = derive2 { name="hopit"; version="0.10.3"; sha256="1dhfsbf4j2acncw0ypg44lkphhznafd80880jxfl6jdhd9fg2nn8"; depends=[MASS Matrix Rcpp RcppEigen Rdpack survey]; }; hornpa = derive2 { name="hornpa"; version="1.0"; sha256="0pfvk2jkrwgvshgq9g55qijgpjh0677rpbya0r8759n92v3axbp4"; depends=[]; }; @@ -10489,6 +10521,7 @@ in with self; { hscovar = derive2 { name="hscovar"; version="0.4.2"; sha256="06bkqcp0vcnkp0jqi0qjvxnw0lk0w4mrf88h1769ak7r49vzlr6f"; depends=[foreach Matrix pwr rlist]; }; hsdar = derive2 { name="hsdar"; version="1.0.3"; sha256="1slb2m62j86hn1kvpv72fvp48sxl7zb2znrr70jqqbrah8n1ynnl"; depends=[Boruta caret raster rgdal signal]; }; hse = derive2 { name="hse"; version="0.0-28"; sha256="14w09wm1kk7b4q8cl5cwjfqvzm2fb4ls8qjw6i0l54184fmw4dah"; depends=[]; }; + hsem = derive2 { name="hsem"; version="1.0"; sha256="0dgp65isbfmw0q4sn36l5226sf6vrl7mvn7gn50xvgybh0l6y7vk"; depends=[boot Matrix mvtnorm numDeriv]; }; hsicCCA = derive2 { name="hsicCCA"; version="1.0"; sha256="1d4lkjrihwhl3jrsj7250ccd90nfwpllyavc3mp15fhcy2jnjci8"; depends=[]; }; hsm = derive2 { name="hsm"; version="0.2.0"; sha256="066shjikqrrkxpnra4zknax1a0sk5nx9ms1br58vwqqvqq479rym"; depends=[]; }; hsmm = derive2 { name="hsmm"; version="0.4"; sha256="1fh8c5kfv4brygdq6bfkrhrhkm99mxl4ljb1mhp9nf2bjlla11mc"; depends=[mvtnorm]; }; @@ -10567,7 +10600,7 @@ in with self; { hypergeo = derive2 { name="hypergeo"; version="1.2-13"; sha256="13jdiy216znwhr91iqnh03mvkmyscw439syb3h4i67dd78sphnvd"; depends=[contfrac deSolve elliptic]; }; hyperoverlap = derive2 { name="hyperoverlap"; version="1.1.1"; sha256="10kcphn5zl1pl70xg9bn947i9mbnjxk03p6y7xhdlv152cihffw0"; depends=[e1071 ggplot2 MASS matlib misc3d rgl]; }; hypersampleplan = derive2 { name="hypersampleplan"; version="0.1.1"; sha256="1sk3s1jm46ac4i7p433s3kyngj86kq2821zzhp30a3y8vi1j2psq"; depends=[]; }; - hypervolume = derive2 { name="hypervolume"; version="2.0.12"; sha256="0jd49jncmg23vm9rkcy6sd4zjwlw75hwps7wahpb36zs9kb63ssq"; depends=[data_table e1071 fastcluster geometry hitandrun ks maps MASS mvtnorm pdist progress raster Rcpp RcppArmadillo rgeos rgl sp]; }; + hypervolume = derive2 { name="hypervolume"; version="3.0.0"; sha256="1iscpr7vldsr6wfnvgyfkylkp8mb0l7939hkwlmxj4nnxvhaphfc"; depends=[caret data_table doParallel dplyr e1071 fastcluster foreach geometry ggplot2 hitandrun ks maps MASS mvtnorm palmerpenguins pbapply pdist progress purrr raster Rcpp RcppArmadillo rgeos sp]; }; hypoRF = derive2 { name="hypoRF"; version="1.0.0"; sha256="1yyq1pjxm9p395wq4zfimvcagspl8vlk0kzpa92pr084q5f7jcyr"; depends=[ranger]; }; hypothesestest = derive2 { name="hypothesestest"; version="1.0"; sha256="0g8sm386m1zm9i3900r62x83wb600cy8hqk7dlvbx6wcgrxg82sm"; depends=[]; }; hypothesisr = derive2 { name="hypothesisr"; version="0.1.1"; sha256="0z06risagphhvqiw4lrxy52q6q2yr10w2yxsm8iz1wh9ik097pcv"; depends=[dplyr httr jsonlite]; }; @@ -10598,7 +10631,7 @@ in with self; { iForecast = derive2 { name="iForecast"; version="1.0.3"; sha256="1mvgg96rd8clqhdg1n2a6vcx3y1rp64n5zlj1nrnpd6c938a0a1m"; depends=[caret magrittr zoo]; }; iGSEA = derive2 { name="iGSEA"; version="1.2"; sha256="1xlz8mbxqnrwyqj7jwma7vmvjlaccajbfxf3hi4wp5qs2pch8806"; depends=[]; }; iGasso = derive2 { name="iGasso"; version="1.4"; sha256="17xxqncl5xcphdqclghcazygcgibf8ijdf4kkl3ga11xf70sahj2"; depends=[CompQuadForm lattice]; }; - iGraphMatch = derive2 { name="iGraphMatch"; version="1.0.1"; sha256="0jpwml540k5wwn958vb6ni3pldpx675y9jm8pr6vp2s571mlz7cv"; depends=[clue igraph irlba Matrix Rcpp]; }; + iGraphMatch = derive2 { name="iGraphMatch"; version="2.0.0"; sha256="0xqf04wc5rm7x281pmnpz6a5ax26i9drgy90ixl4bchcx5ma0mr5"; depends=[clue igraph irlba Matrix Rcpp]; }; iIneq = derive2 { name="iIneq"; version="1.0.2"; sha256="15487majkslabw33dgqfx0jmbzzjhiy8z07bki5540d1wf6rmmnn"; depends=[doParallel foreach]; }; iMRMC = derive2 { name="iMRMC"; version="1.2.3"; sha256="1qga4mm5vslfmxcm3p99nijr4573kq71pfb6yd2ayl6lgjf3y0c3"; depends=[]; }; iMediate = derive2 { name="iMediate"; version="0.5.5"; sha256="1lwhrzm4g2fcazh782g7p11v5pyx165ig1dzgkmdmjffpwk0w8b4"; depends=[MBESS mvtnorm plotly]; }; @@ -10646,7 +10679,6 @@ in with self; { ica = derive2 { name="ica"; version="1.0-2"; sha256="0ya1nph1zwhad0bfz4yxs27kl45yk1dhnphdlrq34p8pqrpmj8g7"; depends=[]; }; ical = derive2 { name="ical"; version="0.1.6"; sha256="1raanaagas1c8w66d8s045z5ip1i97xca4233d55jk6cazv0mb1w"; depends=[V8]; }; icapca = derive2 { name="icapca"; version="1.1"; sha256="131gdrk8vsbac0krmsryvsp21bn9hzxqxq847zn16cxjf6y5i3xb"; depends=[]; }; - icardaFIGSr = derive2 { name="icardaFIGSr"; version="1.0.1"; sha256="1jmqhzc1nkbw3r9p4skh4pcp6986fa09h5bcyx99892gwn9dh7g0"; depends=[caret doParallel dplyr foreach ggplot2 gWidgets2 gWidgets2RGtk2 httr leaflet magrittr plotROC plyr raster reshape2 RGtk2 sp]; }; icarus = derive2 { name="icarus"; version="0.3.1"; sha256="0ipbhzvwdn1cnzgdw33cwv901768srxfi588bimjx2ssl80mqn3a"; depends=[]; }; iccCounts = derive2 { name="iccCounts"; version="1.0.3"; sha256="0wcfdizj4ng7qr3yrjs356qq7xxbiqsf4s6fq4h54bnyvlj611jz"; depends=[Deriv dplyr ggplot2 glmmTMB gridExtra VGAM]; }; iccbeta = derive2 { name="iccbeta"; version="1.2.0"; sha256="03ms1c8qpbgxabj3hh4n0gwcazw6cd0cvixck5rz8fkvj04xzjak"; depends=[lme4 Rcpp RcppArmadillo]; }; @@ -10702,7 +10734,7 @@ in with self; { igcop = derive2 { name="igcop"; version="1.0.1"; sha256="0jl107mdwbldi319qflqjzy8vk02sr4nihky8jl5kcgr6x55qh6z"; depends=[Rcpp rlang vctrs]; }; iglu = derive2 { name="iglu"; version="3.1.0"; sha256="1jq5y18gjxxvb1bhszs0xpklg7m9l9ig6ad1vjpll4m0xcln4hnl"; depends=[caTools dplyr ggplot2 ggpubr gridExtra gtable hms lubridate magrittr patchwork plotly scales shiny tibble tidyr zoo]; }; igoR = derive2 { name="igoR"; version="0.1.3"; sha256="0i1s53pyibxpqdv4269q9riqwr3yvy207hwljx2gbnaf4jqpf5hk"; depends=[]; }; - igraph = derive2 { name="igraph"; version="1.2.7"; sha256="1r8vmqm2rq1jnkh8axr4gw1hbj34ca1dil154qp037imfcra1h95"; depends=[magrittr Matrix pkgconfig]; }; + igraph = derive2 { name="igraph"; version="1.2.8"; sha256="01hvphaf5mx9xvwiazcw39kp6gc1lafqrbjwczy6f7hr145dn1pl"; depends=[magrittr Matrix pkgconfig]; }; igraphdata = derive2 { name="igraphdata"; version="1.0.1"; sha256="19w5npa4b8c054v94xlr7nmhhg2fhq4m8jbds86skp8zvipl4rkl"; depends=[]; }; igraphinshiny = derive2 { name="igraphinshiny"; version="0.1"; sha256="1ww5s4jfihzcx4k35lbhzsf54z720xh7b2p5alzk843m6rx77986"; depends=[igraph shiny]; }; igraphtosonia = derive2 { name="igraphtosonia"; version="1.0"; sha256="0vy9jnpjp68l8s0hi1l57j9p41c543h3iqv16pwl550f38zqp8j6"; depends=[igraph]; }; @@ -10776,7 +10808,7 @@ in with self; { incase = derive2 { name="incase"; version="0.3.1"; sha256="01x1alrk3pp4zi7r4nxnn9y16129ggmiqjys5sfhlybs505yq5vw"; depends=[backports magrittr plu rlang]; }; incgraph = derive2 { name="incgraph"; version="1.0.1"; sha256="0zjvxk2krdlm5bcr0m80nxy46f69a1xadfjw5sjw249b28wdclml"; depends=[BH dplyr orca purrr Rcpp testthat tibble]; }; incidence = derive2 { name="incidence"; version="1.7.3"; sha256="1wdxh2p7scm419fqki0i7vsz45rd7557h5n3zf9fshb8x1fdf2z7"; depends=[aweek ggplot2]; }; - incidence2 = derive2 { name="incidence2"; version="1.2.2"; sha256="1sj79bm4pw8xqpjk5h4s7igqk34n5mhkd2yhlw32hbv0pk8f59lp"; depends=[clock data_table dplyr ellipsis grates lifecycle pillar rlang tibble tidyr tidyselect vctrs]; }; + incidence2 = derive2 { name="incidence2"; version="1.2.3"; sha256="1cs4yh2jaf9d0pivz25v2bv2ci0ks4vw6x3r2zxrq4981hiqgzl1"; depends=[clock data_table dplyr ellipsis grates pillar rlang tibble tidyselect vctrs]; }; incidental = derive2 { name="incidental"; version="0.1"; sha256="012pdwrkzlbnrrkvy67l6nvs1lrjgrzhfh3v4rqzk2ypdvfm3wmx"; depends=[dlnm ggplot2 MASS matrixStats numDeriv]; }; inctools = derive2 { name="inctools"; version="1.0.15"; sha256="0ikldiwgizs2p9vcalk5729dr6krysnyr4ni0ybg9gljw7iafdlf"; depends=[binom cubature doParallel dplyr foreach ggplot2 glm2 magrittr plyr pracma rlang tibble tmvtnorm]; }; indelmiss = derive2 { name="indelmiss"; version="1.0.9"; sha256="0i4qnvc0xb3ngnk8xdscmx7qnicfs7s6czawf6schb1nh2pjpzyq"; depends=[ape numDeriv phangorn Rcpp]; }; @@ -10833,7 +10865,7 @@ in with self; { install_load = derive2 { name="install.load"; version="1.2.3"; sha256="0z4klcpwdlmhwvk41z9q4c4382z8glad27h0gai93zyciy44sdyx"; depends=[assertthat checkmate fastmatch]; }; installr = derive2 { name="installr"; version="0.23.2"; sha256="1xyzap1injimyib16srhbm0hchh1bcd5vg9d9wbvhf8dlpkaxw4q"; depends=[stringr]; }; insuranceData = derive2 { name="insuranceData"; version="1.0"; sha256="0wryh8i1v3bnpbqn6d6dpxr9bwwl6mnh5cb5igz0yanh4m1rx96w"; depends=[]; }; - insurancerating = derive2 { name="insurancerating"; version="0.6.7"; sha256="15rrxp6h8h3si1842vqxpa72s06m8i8wjs5kw4r6fbwhgl9b2fjr"; depends=[ciTools classInt colorspace data_table DHARMa dplyr evtree ggplot2 insight lubridate magrittr mgcv patchwork scales stringr tidyr tidyselect]; }; + insurancerating = derive2 { name="insurancerating"; version="0.6.8"; sha256="0c5sic7vv83w0j9mccvjdds10kds8jn4ry3jp2qjgkq32wz7mg3v"; depends=[ciTools classInt colorspace data_table DHARMa dplyr evtree ggplot2 insight lubridate magrittr mgcv patchwork scales stringr tidyr tidyselect]; }; intRegGOF = derive2 { name="intRegGOF"; version="0.85-5"; sha256="0xjq8vdlgqlzrvp752gd4qfrpnpapx7k6xzfsvfril8ngvm9a162"; depends=[]; }; intRvals = derive2 { name="intRvals"; version="1.0.0"; sha256="0391raj5wq6issvzqm8bfnv1ap2hh5nfsqi9r1x5ss37fvcq5fjm"; depends=[lme4 plyr]; }; intamap = derive2 { name="intamap"; version="1.4-9"; sha256="060sghkqsdrxpa340rvjskh2wafdkffa5q8nlbg1msnsmk639lkn"; depends=[automap doParallel evd foreach gstat MASS mvtnorm rgdal sp]; }; @@ -10867,7 +10899,7 @@ in with self; { intervals = derive2 { name="intervals"; version="0.15.2"; sha256="0mvwfwc03ifb30a3dzbmkv9adwqb8ajxhcw24d8xip8px063plhb"; depends=[]; }; intervcomp = derive2 { name="intervcomp"; version="0.1.2"; sha256="1l6x1fl84li6is3b92b96q3fbv0rpgqy2lvw9cbi2cq8nh9imnyx"; depends=[]; }; interventionalDBN = derive2 { name="interventionalDBN"; version="1.2.2"; sha256="0wpp4bfi22ncvl0vdivniwwvcqgnpifpgxb4g5jbyvr0z735cd9w"; depends=[]; }; - inti = derive2 { name="inti"; version="0.4.4"; sha256="1whazmsw5j09gyiirzpnpmijnpyr6h1bd6lkvimwhndl15pr3sxp"; depends=[agricolae dplyr DT emmeans FactoMineR ggplot2 lme4 purrr shiny stringi stringr tibble tidyr]; }; + inti = derive2 { name="inti"; version="0.5.0"; sha256="1prv5h220i66jbmw6kjkg7ya3v133anz6zlgv4vvw1gpx3pj42bq"; depends=[agricolae dplyr DT emmeans FactoMineR ggplot2 lme4 purrr shiny stringi stringr tibble tidyr]; }; intkrige = derive2 { name="intkrige"; version="1.0.1"; sha256="1p3fn5nzn1iliy025187k590qrsw3z3d47p67gzwwd6h050yrl86"; depends=[gstat raster Rcpp RcppArmadillo Rdpack sp]; }; intmed = derive2 { name="intmed"; version="0.1.2"; sha256="0amcqzinj35yvb9nfy808bz098dqmnds13z335lgqm6sykriyjpl"; depends=[doParallel dplyr foreach MASS mice stringr tibble]; }; intrinsicDimension = derive2 { name="intrinsicDimension"; version="1.2.0"; sha256="0cka20ifxx9njnvp18bzhrvmh3cwjnxkc0a23qzi43dahc51ijbc"; depends=[yaImpute]; }; @@ -10931,7 +10963,7 @@ in with self; { irrCAC = derive2 { name="irrCAC"; version="1.0"; sha256="1j9z8vz5zcl51a8qq6maf9sw0dqaknkrai7gp31mzag7b6vwms06"; depends=[]; }; irrICC = derive2 { name="irrICC"; version="1.0"; sha256="0vi5g97kbyhwxz242d1hpqf11izd3kmlzh3997v07md1llcsp6s3"; depends=[]; }; irrNA = derive2 { name="irrNA"; version="0.2.2"; sha256="1l7ln5ahwnjvvd5gmismwfvljkg6vpipgi7hlcdlqlxadl165pry"; depends=[irr]; }; - irt = derive2 { name="irt"; version="0.1.3"; sha256="01hr3c9by13cif55xn6z4b9zi3k99lx8pf5qzrwj0hard0a6m936"; depends=[ggplot2 Rcpp]; }; + irt = derive2 { name="irt"; version="0.2.5"; sha256="13cfmzr7bw5jbcwykvjli5lsnbcr7n8w6nljwsmnsa42fa7f2159"; depends=[Rcpp]; }; irtDemo = derive2 { name="irtDemo"; version="0.1.4"; sha256="0rpwryybnj7b4bxn0mn1m496y85s2fpqdd78lmdl6jg1ck4j4pb3"; depends=[fGarch shiny]; }; irtGUI = derive2 { name="irtGUI"; version="0.2"; sha256="1hyabm9wvld1b1gvcn02yyd8j1wrpfmpxkcj505az64lqj4p7yj0"; depends=[irtoys magrittr mirt psych readxl shiny shinycssloaders shinydashboard WrightMap writexl]; }; irtProb = derive2 { name="irtProb"; version="1.2"; sha256="12wnvbzkh0mx9i3iyh1v2n2f2wjsjj7ad3dgv9xj949x4nbz16j0"; depends=[lattice moments]; }; @@ -10958,7 +10990,7 @@ in with self; { isocat = derive2 { name="isocat"; version="0.2.6"; sha256="1d6pi2l1lfi4226890lsfa02v0df1mc8gi214icsbk4fid4jygsx"; depends=[foreach magrittr plyr raster sp]; }; isocir = derive2 { name="isocir"; version="2.0-6"; sha256="0dkxdx2g1c579q97r45shws2gylkwqlvrhmc14ddmzi45xhxlql6"; depends=[circular combinat TSP]; }; isodistrreg = derive2 { name="isodistrreg"; version="0.1.0"; sha256="0na7jipwzr16afvz2l6wxh62mv0mrq1ma1qwxnys83zhr0dca099"; depends=[Matrix osqp Rcpp]; }; - isogeochem = derive2 { name="isogeochem"; version="1.0.8.3"; sha256="14716j15138j5dqmvqk4sfpgqk3d2brdj2fjfj6ywz5579py9bqz"; depends=[]; }; + isogeochem = derive2 { name="isogeochem"; version="1.0.9"; sha256="1x7wi04r68564yavvnj4d0ir48avccwdp0aw4d8cgg8r8f5p5fjj"; depends=[]; }; isokernel = derive2 { name="isokernel"; version="0.1.0"; sha256="04mrbq2822yhcq4q82xwm61a38zsk6w55jgjkp0xnardpv8a39pb"; depends=[Matrix RANN]; }; isopam = derive2 { name="isopam"; version="0.9-13"; sha256="0y1yy0922kq5jxyc40gz8sk9vlzwfkfg5swmc6lk4007g9mgc8fm"; depends=[cluster vegan]; }; isopat = derive2 { name="isopat"; version="1.0"; sha256="0fznvgycyd35dh7pbq1xhp667gsficlmycn5pcrqcbs89069xr1s"; depends=[]; }; @@ -11021,7 +11053,7 @@ in with self; { jarbes = derive2 { name="jarbes"; version="1.7.2"; sha256="0qjnx0m65f6a8r6y5mwplaq518lrsf73k8zbf728v857nbjlhf2l"; depends=[ggExtra ggplot2 gridExtra MASS mcmcplots R2jags rjags]; }; jcext = derive2 { name="jcext"; version="0.1.1"; sha256="02zppiyq3gy551zi1g00gam1w4y1wgzn5zi9wrcz8yw915dla0ix"; depends=[ggplot2 maps RColorBrewer rworldmap sp stringr]; }; jcolors = derive2 { name="jcolors"; version="0.0.4"; sha256="18dmjcrci0z1xy2kglrarzm0idr9g3nhbbw7f1ijls3i0piqdri6"; depends=[ggplot2 scales]; }; - jcp = derive2 { name="jcp"; version="1.1"; sha256="1b4z1h4ygf39cg870q08ahzi4ccrlrxp6g97y1qiff5pf9xyp1jc"; depends=[]; }; + jcp = derive2 { name="jcp"; version="1.2"; sha256="120hhysgnb5992ss2ays7ksyy0xb251lsxgnxihc11h2rqg6wqv8"; depends=[]; }; jds_rmd = derive2 { name="jds.rmd"; version="0.3.0"; sha256="0xrs0xabh0m9ax9praiwj1l7z6mb53q53pqvcgwqw7xld6kkgzh7"; depends=[bookdown rmarkdown]; }; jeek = derive2 { name="jeek"; version="1.1.1"; sha256="15n0k0i1wwp72g8zqrjmglnckab3p65q3rnpg6d6h8hjcpv82i7g"; depends=[igraph lpSolve pcaPP]; }; jenga = derive2 { name="jenga"; version="1.0.0"; sha256="1lnqvq979yw3im2cll2bynqafgcs81ndqkzi37smys4fnlb7kyi6"; depends=[abind ggplot2 imputeTS lubridate modeest moments narray philentropy purrr readr scales stringr tictoc]; }; @@ -11061,12 +11093,12 @@ in with self; { jomo = derive2 { name="jomo"; version="2.7-2"; sha256="1sbcpacxnxbzwa8rr9x2bq7hh0s3sw6yznr90dkp43n6xk5xaqir"; depends=[lme4 MASS ordinal survival]; }; jordan = derive2 { name="jordan"; version="1.0-1"; sha256="1d0my0lf8bmlmygz9f23skywzsrhy4xaykyrblbmhb00l0vxpa5s"; depends=[emulator mathjaxr onion]; }; josaplay = derive2 { name="josaplay"; version="0.1.3"; sha256="0q6kjk3mjxwbqvq3zz0ylpi1viznp9pxzngqpjzv5sibv0ndh0lf"; depends=[magrittr utf8]; }; - jose = derive2 { name="jose"; version="1.1.0"; sha256="0663n7kbxijy403fj8jd567kq3lv3wzp42fk9ng4dwpn14wdc8j9"; depends=[jsonlite openssl]; }; + jose = derive2 { name="jose"; version="1.2.0"; sha256="09k6wnnqlsbmlag4156rcsnavph52grqagkax9kd1sxgpknril3v"; depends=[jsonlite openssl]; }; journalabbr = derive2 { name="journalabbr"; version="0.3.0"; sha256="1q1dmvx4b55bbd2qn920kmi962ignj2h36y7f22bqi5kcgzfgx9d"; depends=[dplyr httr knitr purrr rlang rmarkdown shiny stringi stringr tibble]; }; joyn = derive2 { name="joyn"; version="0.1.3"; sha256="0f6dgcbh7qvk97vyykyncf0nlspjhyppwywx2hk3h9gzh323c7zq"; depends=[cli data_table glue rlang]; }; jpeg = derive2 { name="jpeg"; version="0.1-9"; sha256="0wihj538wdnr71wdldym83qadb4kh68a6rkallwbh2f25r27b881"; depends=[]; }; jpmesh = derive2 { name="jpmesh"; version="2.0.2"; sha256="1rq8xqngizgib5lq60zkpd744f7lf8q69dzhxwlbnhirysnvp1p7"; depends=[leaflet magrittr memoise miniUI purrr rlang sf shiny tibble units vctrs]; }; - jqr = derive2 { name="jqr"; version="1.2.1"; sha256="0ywyy846lpn3bw4v3zh3n33c9g6gc9m99knc78bq3wypcafvhzf7"; depends=[lazyeval magrittr]; }; + jqr = derive2 { name="jqr"; version="1.2.2"; sha256="1v3qjqblwn15mlw3cgmrmh78kcckqrj54wnfyfhrfxdsiqi5d0dk"; depends=[lazyeval magrittr]; }; jquerylib = derive2 { name="jquerylib"; version="0.1.4"; sha256="04a40v4znpj98j7y6009d74a6g9dchj5rr3p08cgz9p3rlfw3g7h"; depends=[htmltools]; }; jrc = derive2 { name="jrc"; version="0.5.0"; sha256="0ab8kks0i5cqj2p15hf9zinj3hdji2nj63j134q26bdf4hdvvza3"; depends=[httpuv jsonlite mime R_utils R6 stringi stringr]; }; jrich = derive2 { name="jrich"; version="0.60-35"; sha256="1y486bfqmfg3f22wm0lfk3lh20ljgi8qrgn5jji0f417wh48nf0x"; depends=[ape]; }; @@ -11100,6 +11132,7 @@ in with self; { kStatistics = derive2 { name="kStatistics"; version="2.1"; sha256="018xlxcykjfi2kagf7jvavry8l7i146rqbnb4lz7ccc5q44schwd"; depends=[]; }; kableExtra = derive2 { name="kableExtra"; version="1.3.4"; sha256="1c5vzy95cbz36jwyssr927qicrayifinv861rvnmg4nghb1gl7q9"; depends=[digest glue htmltools knitr magrittr rmarkdown rstudioapi rvest scales stringr svglite viridisLite webshot xml2]; }; kader = derive2 { name="kader"; version="0.0.8"; sha256="15f2swgngw5rdjdsh5kd55wm2nivlfs8pv4mdn0b75qihwgg1zkk"; depends=[]; }; + kairos = derive2 { name="kairos"; version="1.0.0"; sha256="1yi2igflvjjyma1kgrnnnkvmz46axz3dil02l7n26l569bhnp0lh"; depends=[arkhe dimensio extraDistr ggplot2 rlang]; }; kamila = derive2 { name="kamila"; version="0.1.2"; sha256="01rwalv2qigxl3j3jyhrdbxlarwf0xdc8xa6c42sgcl6qpna5vn7"; depends=[abind gtools KernSmooth plyr Rcpp]; }; kangar00 = derive2 { name="kangar00"; version="1.4"; sha256="0cgyxvgk6bxvh77y9vl0p024dya9ffr9fhmwlcxbysbr4p3kyiaj"; depends=[bigmemory biomaRt CompQuadForm data_table igraph KEGGgraph lattice sqldf]; }; kantorovich = derive2 { name="kantorovich"; version="3.0.0"; sha256="1iwbxj2c1085pc57zkb5lklkd0bvx0i27a94r526zv7bxaf0kgrd"; depends=[CVXR gmp lpSolve rcdd Rglpk slam]; }; @@ -11131,7 +11164,7 @@ in with self; { kendallRandomWalks = derive2 { name="kendallRandomWalks"; version="0.9.4"; sha256="1mfqblvsn9p6gdcnbypfpzk0xzn6bz1ajbrkz2dap5w35dia3kxa"; depends=[actuar dplyr ggplot2 tibble]; }; kequate = derive2 { name="kequate"; version="1.6.3"; sha256="1ii3wlypm2qqkfxr3z1sdnmgc43h2zzlw6v4h2xxjdlznzxkp3mr"; depends=[equateIRT ltm mirt]; }; kerTests = derive2 { name="kerTests"; version="0.1.3"; sha256="0981q4n4wrv62x4b8jccj5hx58n975rls3sn3s0mz7ajhh1xxbi9"; depends=[]; }; - keras = derive2 { name="keras"; version="2.6.1"; sha256="0xg4n9sp1pf2yfbba3lb3fzr5gbdwlhv4j1h5njfqmjy5984b8ij"; depends=[ellipsis generics glue magrittr R6 reticulate rlang tensorflow tfruns zeallot]; }; + keras = derive2 { name="keras"; version="2.7.0"; sha256="004z9aajc0b7lw7g68ri7ndabdwbylmnlyvmziljmm29z6fzk8y5"; depends=[ellipsis generics glue magrittr R6 reticulate rlang tensorflow tfruns zeallot]; }; kerasR = derive2 { name="kerasR"; version="0.6.1"; sha256="1yi7710vgcwz0jhishbga41sc6qyk83a0avmq01dvqjsz3cdfsfc"; depends=[reticulate]; }; kerastuneR = derive2 { name="kerastuneR"; version="0.1.0.3"; sha256="1lky84mgppsbn2wn0livx2j18x5vg92mskhb3pyf4ig9qyfxgjkk"; depends=[crayon data_table dplyr echarts4r keras magick plotly reticulate rjson RJSONIO rstudioapi tensorflow tidyjson]; }; kerdiest = derive2 { name="kerdiest"; version="1.2"; sha256="16xj2br520ls8vw5qksxq9hqlpxlwmxccfk5balwgk5n2yhjs6r3"; depends=[chron date evir]; }; @@ -11264,7 +11297,7 @@ in with self; { lacm = derive2 { name="lacm"; version="0.1.1"; sha256="01zd4zsas60kzxx4wsnxs6qqc72i4djwj8m7ryjyx5nrxgpjaixc"; depends=[numDeriv statmod]; }; lacrmr = derive2 { name="lacrmr"; version="1.0.3"; sha256="0zpfc4a7krwkwbf31idpmdzks4qassqnhxk1f9fcq1qjzqzhjkvi"; depends=[dplyr httr janitor jsonlite magrittr sjmisc stringr]; }; lactcurves = derive2 { name="lactcurves"; version="1.1.0"; sha256="1ksllpgz519gzrs8gwfgg7743vj3j7ikmbwgisdjs77sdxxl7xyz"; depends=[orthopolynom polynom]; }; - lacunaritycovariance = derive2 { name="lacunaritycovariance"; version="1.1-1"; sha256="0a3mn4gj5w63h01k3l49phn557fdjynw58dblq5hz9621gqdll1n"; depends=[RcppRoll spatstat spatstat_core spatstat_geom spatstat_linnet]; }; + lacunaritycovariance = derive2 { name="lacunaritycovariance"; version="1.1-2"; sha256="15s05igbrvsl0jlc84750l4i1pahigjacvq6b6gjj9gbyjfs6cbm"; depends=[RcppRoll spatstat spatstat_core spatstat_geom spatstat_linnet]; }; laeken = derive2 { name="laeken"; version="0.5.2"; sha256="1p3ccbaydlr52p8qmgmm2l6kryvq6jjjx7mqn2vv0gpjaxqhyy92"; depends=[boot MASS]; }; laercio = derive2 { name="laercio"; version="1.0-1"; sha256="0la6fxv5k9zq4pyn8dxjiayx3vs9ksm9c6qg4mnyr9vs12z53imm"; depends=[]; }; lagged = derive2 { name="lagged"; version="0.3-0"; sha256="0bm3d6pgb25rw1njarki60j4d7mx7rni25a21iw1l650slg7sscm"; depends=[]; }; @@ -11356,6 +11389,7 @@ in with self; { ldatuning = derive2 { name="ldatuning"; version="1.0.2"; sha256="0367y6k5i4sccwfcm89xyc62qblrlwnm6hsa2jf346rnrfz9hkkc"; depends=[ggplot2 reshape2 Rmpfr scales slam topicmodels]; }; ldbod = derive2 { name="ldbod"; version="0.1.2"; sha256="1ylzkswnhf4jnjx2ijasy49pj78ffx333za0bx2fnf3g85kicqiv"; depends=[mnormt RANN]; }; ldbounds = derive2 { name="ldbounds"; version="1.1-1.1"; sha256="10rmkidvvhwnrkc62c5ld44xhbvx1k8mch28h1yryakn8gznp3p8"; depends=[lattice]; }; + lddmm = derive2 { name="lddmm"; version="0.1.0"; sha256="19y2249fj1k1qq4lp6qzbd3jjwlz2li1710k3l7j7a9gg3rq9gfs"; depends=[dplyr ggplot2 gtools LaplacesDemon latex2exp plyr RColorBrewer Rcpp RcppArmadillo RcppProgress reshape2 rgen tidyr]; }; ldhmm = derive2 { name="ldhmm"; version="0.5.1"; sha256="1jwgxwzz56n6hhpp1qks1x0jsfbrjgfsl6h5sp7498l4d2f279ij"; depends=[ecd ggplot2 moments optimx scales xts zoo]; }; ldsep = derive2 { name="ldsep"; version="2.1.2"; sha256="1kpqmwphkhw9l2s8mz4s6mjfjlysivpzqvhpncw5nphhgdqd22j6"; depends=[abind ashr corrplot doParallel foreach lpSolve matrixStats modeest Rcpp RcppArmadillo]; }; ldsr = derive2 { name="ldsr"; version="0.0.2"; sha256="0wmxpglad1mk2c1gi9kxmh149r8ad0l8i2xlfs1hdjb6a4wxsklr"; depends=[data_table foreach MASS Rcpp RcppArmadillo]; }; @@ -11392,7 +11426,7 @@ in with self; { learnrbook = derive2 { name="learnrbook"; version="1.0.2"; sha256="13jd5j597pv3ainy6xx7ra402ymrh25hgfjzq0csq6d86n5fz3aj"; depends=[]; }; learnstats = derive2 { name="learnstats"; version="0.1.1"; sha256="1sa064cr7ykl4s1ssdfmb3v1sjrnkbwdh04hmwwd9b3x0llsi9vv"; depends=[ggplot2 Rcmdr shiny]; }; leastcostpath = derive2 { name="leastcostpath"; version="1.8.0"; sha256="1106wh2yy048jimiyb3gwm9d00jfq4wk0dnj4a5sfk90rkg28acw"; depends=[gdistance Matrix pbapply raster rgdal rgeos sp]; }; - ledger = derive2 { name="ledger"; version="2.0.7"; sha256="07shnvawahm9bvwz37fynkp7sd69y9gc1mjhn7x8883jz8k4mjic"; depends=[dplyr rio rlang stringr tibble tidyr tidyselect]; }; + ledger = derive2 { name="ledger"; version="2.0.9"; sha256="0ynr1g7vfkabl78zjnshyxixk45g28bi9h1p4zjfl83009yhqjwx"; depends=[dplyr rlang stringr tibble tidyr tidyselect]; }; leerSIECyL = derive2 { name="leerSIECyL"; version="1.0.2"; sha256="1zx28gpnys9mmhq7wwljfnq92wj1h1vxgqiirnfmn36z942nvmxl"; depends=[RCurl]; }; lefko3 = derive2 { name="lefko3"; version="3.8.0"; sha256="1x8nrm6zvgkv7j0jrq69lvl0a3g9ysvibq8457azy7k5nzsla4zl"; depends=[glmmTMB lme4 MASS MuMIn pscl Rcpp RcppArmadillo SparseM stringr VGAM]; }; legco = derive2 { name="legco"; version="0.1.4"; sha256="0fd1d2zf510lyrwclsy57d8lgqprk6p8c6ghxglgm6gbx9d2yrgg"; depends=[dplyr httr jsonlite]; }; @@ -11417,7 +11451,7 @@ in with self; { lexiconPT = derive2 { name="lexiconPT"; version="0.1.0"; sha256="0w53gnr29nzc1ib54rnxdycs0c5f7vpv586qmvxxzy4ar16kisaq"; depends=[]; }; lfactors = derive2 { name="lfactors"; version="1.0.4"; sha256="1r8qlwj3zsm233jfx9ag0q5g1knvjmbwl3785pwcd12zi6f68dcc"; depends=[]; }; lfda = derive2 { name="lfda"; version="1.1.3"; sha256="0sk409jx4chs2wzhpfw7rlg9pwpdqg32ncfl3w243ypq73jq0qv3"; depends=[plyr rARPACK]; }; - lfe = derive2 { name="lfe"; version="2.8-7"; sha256="0yzif44kjnlr2iva8l9vi0kw83kadw573i3x5xnam0s5mhha1hlp"; depends=[Formula Matrix sandwich xtable]; }; + lfe = derive2 { name="lfe"; version="2.8-7.1"; sha256="0l4clxsh1s8zram1ad8ixzzganz82s7r6na93qlzm11zqkcfz8fn"; depends=[Formula Matrix sandwich xtable]; }; lfl = derive2 { name="lfl"; version="2.1.2"; sha256="0qi84mmsxah6yjacf6q2grgd40nqkf75srcfwksacv90qz6bvm0x"; depends=[e1071 foreach forecast plyr Rcpp tseries zoo]; }; lfmm = derive2 { name="lfmm"; version="1.1"; sha256="1v2sb2qghwcln3b5rpzhakg562izlzyxzvz49nz74y0rh2gx7g9i"; depends=[foreach ggplot2 knitr MASS purrr Rcpp RcppEigen readr rmarkdown RSpectra]; }; lfstat = derive2 { name="lfstat"; version="0.9.4"; sha256="0lm9fyw45kdkkjldkmagykn9p3l3jlw2ky3h00f7j6rqkizjm6r0"; depends=[dygraphs lattice latticeExtra lmom lmomRFA plyr xts zoo]; }; @@ -11441,7 +11475,7 @@ in with self; { librarysnapshot = derive2 { name="librarysnapshot"; version="0.1.2"; sha256="0v4x564zpm58kxs5n84bi6mcjhbzjg6a2lc30vsc8kbm3qy0nq38"; depends=[]; }; libsoc = derive2 { name="libsoc"; version="0.7"; sha256="1r548rvj98wl0yp6jx5d2qhvy1y4883qp0w3jjk97vp07a1cywn8"; depends=[]; }; libstableR = derive2 { name="libstableR"; version="1.0.2"; sha256="1gkcgbc8a7ks9x8mqmlz98hk55q3qy62izam7csz1s0r5dzsyqcr"; depends=[Rcpp RcppGSL]; }; - lidR = derive2 { name="lidR"; version="3.2.2"; sha256="0nna76pi2q3zhydzsgqz8jk3rqgcgw3hr65lgllpn8daylqh4r8b"; depends=[BH data_table future geometry glue lazyeval raster Rcpp RcppArmadillo rgl rlas sf sp]; }; + lidR = derive2 { name="lidR"; version="3.2.3"; sha256="0132vbfdppw9fr029w8c6lcfg8jxbfvb2y3p3wgs2n776c6y6wky"; depends=[BH data_table future geometry glue lazyeval raster Rcpp RcppArmadillo rgl rlas sf sp]; }; lidaRtRee = derive2 { name="lidaRtRee"; version="3.1.0"; sha256="17k6gysypc91lx5701bvf4rvh10rrmmz7z6xlm09cchqfpkhlvch"; depends=[car gvlma imager leaps lidR raster reldist sp]; }; lifecontingencies = derive2 { name="lifecontingencies"; version="1.3.7"; sha256="00vqbrv1y3hg8iqx6mfm7p81a23hf69kc20pzacsx93yqdh97841"; depends=[markovchain Rcpp]; }; lifecourse = derive2 { name="lifecourse"; version="2.0"; sha256="1m8ihqvzhzpq2m2pdvh37bpq9pdbj23r3y0jkl3q8farh3qj473d"; depends=[TraMineR]; }; @@ -11453,7 +11487,7 @@ in with self; { lifx = derive2 { name="lifx"; version="0.2.0"; sha256="0p9ljd3s3lc1rkhzpp801izy9y52f0yc1dsrsxwx5gi89cnib596"; depends=[assertthat crayon curl httr jsonlite]; }; liger = derive2 { name="liger"; version="2.0.1"; sha256="121ipwznm40x2xhhlxd20385va4nmvgni5dg24lbhyfn5sb3dsy1"; depends=[matrixStats Rcpp RcppArmadillo]; }; lightgbm = derive2 { name="lightgbm"; version="3.3.1"; sha256="0hvpwirskzcd7ww47f9gllgl3wjvpghnwj8a41glpppwwaaxa0z4"; depends=[data_table jsonlite Matrix R6]; }; - lightr = derive2 { name="lightr"; version="1.6.0"; sha256="1d1xrsra3ng5g9vlsvdgimfyx6kqdazwv8i787qh3nbavxfqjmay"; depends=[future_apply progressr xml2]; }; + lightr = derive2 { name="lightr"; version="1.6.2"; sha256="1dq4gj4yxqxaqip2vy3jynxrsllqlcjlg9v83m0ilrf6nhnigm2i"; depends=[future_apply progressr xml2]; }; lightsout = derive2 { name="lightsout"; version="0.3"; sha256="0ypniqf9wk35dd9j57wd7gxchr5hy25fwhmkndz2z8b9ajhm3c9b"; depends=[magrittr shiny shinyjs]; }; likelihood = derive2 { name="likelihood"; version="1.7"; sha256="0q8lvwzlniijyzsznb3ys4mv1cqy7ibj9nc3wgyb4rf8676k4f8v"; depends=[nlme]; }; likelihoodAsy = derive2 { name="likelihoodAsy"; version="0.51"; sha256="0qxwdf6npyj926zd2pbfscgz1z01hwgm6099h882d2l1sim2j9g7"; depends=[alabama cond digest nleqslv pracma Rsolnp]; }; @@ -11508,6 +11542,7 @@ in with self; { listdtr = derive2 { name="listdtr"; version="1.1"; sha256="13p27cx2w3qb1rcizrva2ib7x7sm310gasi7n5pvvd8rkpwaypzq"; depends=[ggplot2]; }; listenv = derive2 { name="listenv"; version="0.8.0"; sha256="0ps8bk7zlhbviawrw7vw25skjq81hkk3ijyi6g74dmfqy8zsyapx"; depends=[]; }; listviewer = derive2 { name="listviewer"; version="3.0.0"; sha256="0zirxdj58h43062f68h6nqcgmpnvdglxx3kjbs4i4k0z9wvqhx8r"; depends=[htmltools htmlwidgets shiny]; }; + litRiddle = derive2 { name="litRiddle"; version="0.4.0"; sha256="0pq8140g0w03x38k0wv8ia83b8fvb9zfp1qmg0yp9apq20v1nzs5"; depends=[dplyr ggplot2]; }; liteq = derive2 { name="liteq"; version="1.1.0"; sha256="0w3w9f6374qwvlrqknavqh9b38n5q1r6aw5zmz5lahvadalwdbwi"; depends=[assertthat DBI rappdirs RSQLite]; }; litteR = derive2 { name="litteR"; version="0.9.1"; sha256="14giq4lp3g1srkj8y94y8sih11ix32fnh6nwaz3xvrx7jm2ic580"; depends=[dplyr fs ggplot2 purrr readr rlang rmarkdown stringr tidyr tidyselect yaml]; }; littler = derive2 { name="littler"; version="0.3.14"; sha256="14iwwp6gdshz3igkq96sjfrhdgk3ia7cf9rng1ylsp7809v1xi1x"; depends=[]; }; @@ -11550,8 +11585,8 @@ in with self; { lmomRFA = derive2 { name="lmomRFA"; version="3.3"; sha256="113sz2lgb3yv3ayy3x831qww3d088yw2iyjrdc8jfhq6id1w9giq"; depends=[lmom]; }; lmomco = derive2 { name="lmomco"; version="2.3.7"; sha256="1pxk3hpmihhzyy3yawmi7d6fq0zfxliz8lwsbr9jr1kahhhbw982"; depends=[goftest Lmoments MASS]; }; lmreg = derive2 { name="lmreg"; version="1.2"; sha256="02a4nqqcfkjlq21mpk8abd4lj4ib2nps3ndf7zgmzygkd1z0df18"; depends=[MASS]; }; - lmridge = derive2 { name="lmridge"; version="1.2"; sha256="091rznzh77bmsv7sw9xmsq6s9pnljyq7qyl74kgcxss718134jr3"; depends=[]; }; - lmtest = derive2 { name="lmtest"; version="0.9-38"; sha256="0sr19bmw2cpagfvwg772m79wvl1i2hww1xfr69bzr3rr8pm2r8ij"; depends=[zoo]; }; + lmridge = derive2 { name="lmridge"; version="1.2.1"; sha256="1wxgsrigyjh22aa4m1z5qs4ac168g1g1g1jnj154490znfqdqip0"; depends=[]; }; + lmtest = derive2 { name="lmtest"; version="0.9-39"; sha256="126l0y7j2iy6g1w4zii1qkfcjq6wrnc3w2li0bz376smpryddy3i"; depends=[zoo]; }; lmtp = derive2 { name="lmtp"; version="1.0.0"; sha256="04lmbb5j3ndjjdpb2yih0lxijzah6p45hv2jiva1l49p9jxwxw0i"; depends=[cli data_table future generics nnls origami progressr R6 SuperLearner]; }; lmvar = derive2 { name="lmvar"; version="1.5.2"; sha256="0wrny8yzk5y4mzpri6xv5wibbnbaxm0195lcbk5jrl5l5gs99bn6"; depends=[Matrix matrixcalc maxLik]; }; lmviz = derive2 { name="lmviz"; version="0.2.0"; sha256="0sl2k02m5bxkb4jg8y666ln0xxhr4dhsfz9hlp55p9smlhycl5s2"; depends=[car lmtest MASS mgcv rgl scatterplot3d shiny shinyjs]; }; @@ -11585,7 +11620,7 @@ in with self; { log = derive2 { name="log"; version="1.1.0"; sha256="04cl8qb2ivdili89h4cghcjqywpkz85v48g2vkg6hdlimcd63wff"; depends=[cli crayon R6]; }; log4r = derive2 { name="log4r"; version="0.4.2"; sha256="0d7yxp3h7iy0miaprgp16n5vbxk0mvy8aci8r0mmml6wcl2h4jlj"; depends=[]; }; logKDE = derive2 { name="logKDE"; version="0.3.2"; sha256="09gachibj0klqa9ijw572lwphbh9qj6zqray5byq1dh7zsiq516q"; depends=[pracma Rcpp]; }; - logNormReg = derive2 { name="logNormReg"; version="0.4-0"; sha256="10b6a7z2mq0vrpg3sy4m5g8xaw3zs5k0zsbngxqmjmln99big9ad"; depends=[]; }; + logNormReg = derive2 { name="logNormReg"; version="0.5-0"; sha256="0lv5m6yz1v8pi1svw9qh3gkq3r0lp13qhx3p6g6yvzqwd0px0pip"; depends=[]; }; logOfGamma = derive2 { name="logOfGamma"; version="0.0.1"; sha256="0r7di0l646ycfmdjk8hli6b0v7qj0i8z3i8i7rwd3fsblb2q22vd"; depends=[]; }; logbin = derive2 { name="logbin"; version="2.0.5"; sha256="1v8bzhh8bm8704sv68k7dmbs0m7f656s91jhc0p7a6w7vqlmv803"; depends=[glm2 iterators itertools2 Matrix turboEM]; }; logconcens = derive2 { name="logconcens"; version="0.17-0"; sha256="0zrnyb25iyr3cm83b3xp21nipv1q0l1kp7nwjaja3173z7wwlvvr"; depends=[]; }; @@ -11618,7 +11653,7 @@ in with self; { longRPart2 = derive2 { name="longRPart2"; version="0.2.3"; sha256="1vqcsxi6c4hqrpk3ns7yhghfryin1psxl38qkz2xz8cvyn58f685"; depends=[formula_tools ggplot2 MASS nlme rpart]; }; longclust = derive2 { name="longclust"; version="1.2.3"; sha256="1g45d5pak2vhbjrcmxxrk9jyrdxkqwy45phzpsw6b2bjyrgr4i7g"; depends=[]; }; longit = derive2 { name="longit"; version="0.1.0"; sha256="08d7pfwd2anx6cdgpyzrn5na3s75z6plbxb11774zcxyzg81rz69"; depends=[AICcmodavg missForest R2jags rjags]; }; - longitudinal = derive2 { name="longitudinal"; version="1.1.12"; sha256="1d83ws28nxi3kw5lgd5n5y7865djq7ky72fw3ddi1fkkhg1r9y6l"; depends=[corpcor]; }; + longitudinal = derive2 { name="longitudinal"; version="1.1.13"; sha256="046w3xbr535c5jyd68adv42a7limxp1mv57b5w6w673w707lmw2p"; depends=[corpcor]; }; longitudinalData = derive2 { name="longitudinalData"; version="2.4.1"; sha256="0lnvcfgj721bawl1ciz0jw83mfsnzkhg6jn824vr3qdm4rbib2vd"; depends=[class clv misc3d rgl]; }; longitudinalcascade = derive2 { name="longitudinalcascade"; version="0.3.2.1"; sha256="03nqglxyz6qfalxdnyh2aarxv3agn0b3r4nhsji4v9703h4m1fvg"; depends=[dplyr ggplot2 lubridate rlang scales survival tidyr zoo]; }; longmemo = derive2 { name="longmemo"; version="1.1-2"; sha256="01rj5x9cgscsrakbx9155mbvs35fd3j484cfz5cds9vl521fjr3r"; depends=[]; }; @@ -11655,13 +11690,13 @@ in with self; { lpme = derive2 { name="lpme"; version="1.1.2"; sha256="1b0w5ji8hjayni1sh5id193cmanf6n11p16fijkxln4sv4lks4aw"; depends=[decon flexmix locpol Rcpp RcppArmadillo]; }; lpmodeler = derive2 { name="lpmodeler"; version="0.2-1"; sha256="17k67l03dkjx61p4hwswghjm6awk0zx173x9xafxrfd8jrgsf6kf"; depends=[slam]; }; lpridge = derive2 { name="lpridge"; version="1.0-8"; sha256="0jk4l95z9rcdqkc8lpp4sf1mg2dqj67rhqw1iafrxy5lx4jfaqqx"; depends=[]; }; - lqmm = derive2 { name="lqmm"; version="1.5.5"; sha256="15kyfpbvdgyxl6gjqinx79zq03axg36qgaqfc6zq4blyjlhj6i3c"; depends=[nlme SparseGrid]; }; + lqmm = derive2 { name="lqmm"; version="1.5.6"; sha256="1s0x95c3gqznw9snr7fm2k41n6h6ay9rsk3bp88jcna1yn3f525i"; depends=[nlme SparseGrid]; }; lqr = derive2 { name="lqr"; version="4.0"; sha256="1hv8zvpivmp55gsyk9wzhix4swkx5pp6h1kbiz5749irhfx7kpx0"; depends=[MomTrunc numDeriv quantreg spatstat_geom]; }; lrequire = derive2 { name="lrequire"; version="0.1.3"; sha256="03c8h9v2xhlv7bj5jv117a27gaqaly2kdxs9zyihsm9yh9rg3d79"; depends=[]; }; lrgs = derive2 { name="lrgs"; version="0.5.4"; sha256="0mf6wqlv21z68w81hvpmhgngvdsklf3x2678d9c9lxfmqmpv4a7y"; depends=[mvtnorm]; }; lrmest = derive2 { name="lrmest"; version="3.0"; sha256="1yddkgza672z9y0ipgl92pg9prhmr387zsqf0qbi9k2yzfz2vvs6"; depends=[MASS psych]; }; lsa = derive2 { name="lsa"; version="0.73.2"; sha256="1a33irqa6qvbc02z12rgbgv8kxq2gmahy7j5bg8b23lvvaxif06b"; depends=[SnowballC]; }; - lsasim = derive2 { name="lsasim"; version="2.1.1"; sha256="18xjns1sgzmmy3mf162kcq7y106gbywzmsfd4z9xl8d8wvwqa7b7"; depends=[cli mvtnorm polycor]; }; + lsasim = derive2 { name="lsasim"; version="2.1.2"; sha256="1x6vgdslw6v91l1p1igrvnj3s4ap2igqcx3m95y1ada7kpl3b2jk"; depends=[cli mvtnorm polycor]; }; lsbclust = derive2 { name="lsbclust"; version="1.1"; sha256="1pbai58pfvhfcrd0nj13d54vrn9wrx2xapqhgqa1pkrjwbk5amj7"; depends=[clue doParallel foreach ggplot2 gridExtra mvtnorm plyr Rcpp reshape2]; }; lsbs = derive2 { name="lsbs"; version="0.1"; sha256="14aq80zg89lq7hffv1v1m4n7hbzqzxkazcga4y2fq40ij3v7kv6n"; depends=[ks Matrix numDeriv]; }; lsdbc = derive2 { name="lsdbc"; version="0.1.0"; sha256="1dk07zlvwwfhlll21ql264gx94v3jvgidy3yvxidwmhnyc1vx80x"; depends=[]; }; @@ -11730,7 +11765,6 @@ in with self; { mSTEM = derive2 { name="mSTEM"; version="1.0-1"; sha256="0mh09mqqpq9k8jrxs9d39009idld3b4y98ik75czdy580jmdg7mm"; depends=[doParallel foreach latex2exp]; }; mSimCC = derive2 { name="mSimCC"; version="0.0.1"; sha256="1f15r214srcdb4yacmy4hq890a674iqd2s7bry5dk20k46qdl026"; depends=[doParallel foreach]; }; mStats = derive2 { name="mStats"; version="3.4.0"; sha256="196fjnld26dmirga4mghlvsrj4fgnw08wdg77masxm15kpvm1x1d"; depends=[]; }; - maGUI = derive2 { name="maGUI"; version="3.0"; sha256="1ak2sa6y766v5zh54bf7j9hklmkia40nsdchyw834ybb9ijjyjsm"; depends=[Biobase gWidgets2 gWidgets2RGtk2 impute limma Rgraphviz RGtk2 ssize]; }; maSAE = derive2 { name="maSAE"; version="2.0.3"; sha256="0453rvfhi4zvjhbkjammy81gxi6ax75gs8iqpnphbrv60agz0bjc"; depends=[]; }; maat = derive2 { name="maat"; version="1.0.2"; sha256="1fw1kk59qz86vahwrk8xyifd8lyag7xch2mvhr7jk5wsbk7clrcl"; depends=[diagram MASS Rdpack readxl TestDesign]; }; mable = derive2 { name="mable"; version="3.0.1"; sha256="14vv0dhfrsbxqs8nmisx1ka9r4h9nhgj4mjqnakwchgr58jhpwxb"; depends=[doParallel foreach icenReg iterators survival]; }; @@ -11793,7 +11827,7 @@ in with self; { mapStats = derive2 { name="mapStats"; version="2.4"; sha256="18pp1sb9p4p300ffvmzjrg5bv1i7f78mhpggq83myc26c3a593na"; depends=[classInt colorspace Hmisc lattice maptools RColorBrewer reshape2 sp survey]; }; mapaccuracy = derive2 { name="mapaccuracy"; version="0.1.0"; sha256="1rrnbmar8s48kww2x9qjlm68xs55mbc8cnms2crdsaah7787s6aa"; depends=[assertthat gtools reshape]; }; mapbayr = derive2 { name="mapbayr"; version="0.5.0"; sha256="12k8n3fcm9km14ih4vspv4p314yqqim2v3hgcd4h98jwsp3ls6aq"; depends=[dplyr ggplot2 magrittr mrgsolve optimx purrr rlang stringr tibble tidyr]; }; - mapboxapi = derive2 { name="mapboxapi"; version="0.2"; sha256="0rqpynin27vvwyjjv0c22mhrpsq4cgkkvhfhf24aqbkzfay92905"; depends=[aws_s3 curl dplyr geojsonsf httr jsonlite leaflet magick protolite purrr rlang sf slippymath stringi tidyr]; }; + mapboxapi = derive2 { name="mapboxapi"; version="0.3"; sha256="151p1k38s38bbgzwhq52jhsmlg9nhb6sm5qlz9589s0yx06mp370"; depends=[aws_s3 curl dplyr geojsonsf httr jpeg jsonlite leaflet magick png protolite purrr raster rlang sf slippymath stringi tidyr units]; }; mapboxer = derive2 { name="mapboxer"; version="0.4.0"; sha256="0f873js87dgk8nqnhpxh88svvsbnk81vkm7gycb62mkr4xqsgqs7"; depends=[geojsonsf htmltools htmlwidgets magrittr purrr yaml]; }; mapcan = derive2 { name="mapcan"; version="0.0.1"; sha256="1a4135wc1h4nzcv6xq0bg75i744wyq8p7q0ix7y2x2gb6s35w46k"; depends=[dplyr ggplot2 magrittr]; }; mapchina = derive2 { name="mapchina"; version="0.1.0"; sha256="0f6ayq4izqxcj0hi2vfg0pc239hxgg7abb5476v5mfjjyi156mni"; depends=[sf]; }; @@ -11839,10 +11873,11 @@ in with self; { markophylo = derive2 { name="markophylo"; version="1.0.8"; sha256="05hfykjzx4wf2p1d6dvyx5lizfxmq3zprvnfg74r7l1izp7wpl38"; depends=[ape numDeriv phangorn Rcpp RcppArmadillo]; }; markovchain = derive2 { name="markovchain"; version="0.8.6"; sha256="1al3b76qi6var3gpfqxy6kp0varyp7sbblrhm6hvzf8nwqvl3hq2"; depends=[expm igraph matlab Matrix Rcpp RcppArmadillo RcppParallel]; }; marl = derive2 { name="marl"; version="1.0"; sha256="0rndnf3rbcibv3gsrw1kfp5zhg37cw9wwlz0b7dbwprd0m71l3pm"; depends=[]; }; - marmap = derive2 { name="marmap"; version="1.0.5"; sha256="0aqir3daf154n6qqmy48snsgiz9ixdkrfck67x4pmasxj9w5wgl9"; depends=[adehabitatMA DBI gdistance geosphere ggplot2 ncdf4 plotrix raster reshape2 RSQLite shape sp]; }; + marmap = derive2 { name="marmap"; version="1.0.6"; sha256="16r7in3m63l7fdwxwfdphcd4fr073fb675zabjxphpxmclikyxdz"; depends=[adehabitatMA DBI gdistance geosphere ggplot2 ncdf4 plotrix raster reshape2 RSQLite shape sp]; }; marqLevAlg = derive2 { name="marqLevAlg"; version="2.0.5"; sha256="0cp3p9cgnb9hw08s8gjs7yj51d4fsa5zkkrikbgzkw0skj1gaa51"; depends=[doParallel foreach]; }; mase = derive2 { name="mase"; version="0.1.3"; sha256="10wyrvh3p344inx5qbzkwh4rr3lmpnh1ikhrghmlqr5607kiy3fm"; depends=[boot dplyr glmnet magrittr Rdpack rpms survey]; }; mashr = derive2 { name="mashr"; version="0.2.50"; sha256="0dj5h7fksy36ksancrvadxfn3915m22aza9qyksf7dmqj1mghd9g"; depends=[abind ashr assertthat mvtnorm plyr Rcpp RcppArmadillo RcppGSL rmeta softImpute]; }; + maskRangeR = derive2 { name="maskRangeR"; version="1.0"; sha256="12g9cx7l2bwl3wzka11p73r6w47h4nma3rdlhm9kq1a69ig5cm68"; depends=[dismo dplyr e1071 gdalUtils lubridate magrittr maptools raster rgdal sp tidyverse virtualspecies]; }; mason = derive2 { name="mason"; version="0.3.0"; sha256="1x5wiagb1sy5gkp0xkbr1jzhrjg1c2bqdh4hy6igwcnws2cbhxyr"; depends=[broom dplyr magrittr purrr rlang tibble tidyr tidyselect]; }; masscor = derive2 { name="masscor"; version="0.0.7.1"; sha256="1153gx648csmzc2znf7l84f134qzp238hqj2s60r9najk1pczgf6"; depends=[metRology]; }; mastif = derive2 { name="mastif"; version="1.0.1"; sha256="1jw7dz4qxyj848qm7lwg0klcw028260nizdi5gdwf7wd5a2nis9c"; depends=[corrplot RANN Rcpp RcppArmadillo repmis xtable]; }; @@ -12023,7 +12058,7 @@ in with self; { memo = derive2 { name="memo"; version="1.0.1"; sha256="14nvqi1qsin45ksd0wp9cigjk1gghr4jijdqkaqh177dwa244r9j"; depends=[digest]; }; memochange = derive2 { name="memochange"; version="1.1.1"; sha256="144134kpchb7ps8b2g7pyga5add0iqphzcwygf11aybmbzmp90x7"; depends=[forecast fracdiff longmemo LongMemoryTS sandwich strucchange urca]; }; memofunc = derive2 { name="memofunc"; version="1.0.2"; sha256="02y32mnwafqnsvs3vy4g8v0jmdvnx935dqavy3q1f2n8c76p0bk9"; depends=[digest magrittr uuid]; }; - memoiR = derive2 { name="memoiR"; version="1.1-2"; sha256="0py8kkj0jka6a211r7yhdmwnhf7nz13zkbgai2df4bc3gxxw9hzs"; depends=[bookdown rmarkdown usethis]; }; + memoiR = derive2 { name="memoiR"; version="1.1-3"; sha256="1p3s0rv4l44gx726frrwp64xv7xakyh2svjqglg85pv3krhlw4b4"; depends=[bookdown rmarkdown usethis]; }; memoise = derive2 { name="memoise"; version="2.0.0"; sha256="1bzcv7pmls3bx2w5ccv1pm20wycbfqba1v76k0fjgmjsm6hy76pz"; depends=[cachem rlang]; }; memor = derive2 { name="memor"; version="0.2.3"; sha256="1b3rjh121in7gi6khbhh2d1r0998a24ifcg6hpv8cdksl6lhm330"; depends=[knitr rmarkdown yaml]; }; memoria = derive2 { name="memoria"; version="1.0.0"; sha256="05nx6xkgf1mkn1ajjizwp66xhn7ddbvgdnmkdbcl4s7sq456vczw"; depends=[cowplot ggplot2 HH ranger stringr tidyr viridis viridisLite zoo]; }; @@ -12036,7 +12071,7 @@ in with self; { merror = derive2 { name="merror"; version="2.0.2"; sha256="13d9r5r83zai8jnzxaz1ak40876aw20zbpr244gs55rvj5j7f87q"; depends=[]; }; meshed = derive2 { name="meshed"; version="0.1.4"; sha256="1fqfn4di04ysbafxd0anxsf3n9zr6xwgw4x78szlygkr7qv1chz1"; depends=[dplyr glue magrittr Rcpp RcppArmadillo rlang]; }; messaging = derive2 { name="messaging"; version="0.1.0"; sha256="0q19cqp1zgh0yhk1ql0jqf414bhx6jwhkairq6wx2cmkli2g7k1y"; depends=[dplyr glue magrittr rlang stringr]; }; - messydates = derive2 { name="messydates"; version="0.1.1"; sha256="1xqavldvq9qxhk5y7dlcra3vlqdvjxmhk4ydyrk25diqhaix4qqv"; depends=[covr dplyr lubridate purrr stringr tibble]; }; + messydates = derive2 { name="messydates"; version="0.2.0"; sha256="193rc2723i6a75g8qmrf743h89nsxm9j1dlvxncsxk1jpj5hzd43"; depends=[dplyr lubridate purrr stringr tibble]; }; met = derive2 { name="met"; version="0.1.0"; sha256="0714103xzc4n178307czxmcv7ygjiigjr9b6xnj240ljp7qmln19"; depends=[DiPs]; }; metR = derive2 { name="metR"; version="0.11.0"; sha256="09ar9lckrzbvcy0jgnwlrnj96ln426yh70dgjfmlac68bhinv2fw"; depends=[checkmate data_table digest fields Formula formula_tools ggplot2 gtable isoband lubridate memoise plyr purrr RCurl scales sp stringr]; }; metRology = derive2 { name="metRology"; version="0.9-28-1"; sha256="1syjwblyd18myxrs0hx4m91fgb6zs3r4g7w701j2f2pw6j9mvz0y"; depends=[MASS numDeriv robustbase]; }; @@ -12071,7 +12106,7 @@ in with self; { metafor = derive2 { name="metafor"; version="3.0-2"; sha256="12hk6k2awbf022bbkh0zqcmm8fi534yzgv83c5rxl9djjx8l7pq2"; depends=[mathjaxr Matrix nlme pbapply]; }; metaforest = derive2 { name="metaforest"; version="0.1.3"; sha256="1q6m60cd7gl7y0gdjd10ky25hwv5jc4x5g5sr5w61xc3j2hnw8in"; depends=[data_table ggplot2 gtable metafor ranger]; }; metafuse = derive2 { name="metafuse"; version="2.0-1"; sha256="1zdw22f5kzvy2xr3c2csy873hcags60as567brc2sw17d0apfy8j"; depends=[evd glmnet MASS Matrix]; }; - metagam = derive2 { name="metagam"; version="0.2.0"; sha256="0il5m02v3fv5gl9pf3ggkv0kwaycmvvaxzxda20rg30cbhma27vy"; depends=[dplyr furrr ggplot2 knitr metafor metap purrr rlang stringr tidyr]; }; + metagam = derive2 { name="metagam"; version="0.3.0"; sha256="0h2l2lmpicabbnlfq4aw6n1wy20lw7f43v9khv4as7dz7k158ihp"; depends=[ggplot2 knitr metafor mgcv rlang]; }; metagear = derive2 { name="metagear"; version="0.7"; sha256="1gwfk6v591xxsccbi287b90vnf5c1jfz72jxcxy9iswp0jpjflaq"; depends=[MASS Matrix metafor stringr]; }; metaggR = derive2 { name="metaggR"; version="0.2.0"; sha256="00w40ip630p42h9v87zq08xrggpwkvbqmn4m0963s7x7yjscwp9d"; depends=[MASS]; }; metaheuristicOpt = derive2 { name="metaheuristicOpt"; version="2.0.0"; sha256="0ra4hl9l1jlzymj218m2i6xrxfacyx4aaln5pk7q4di2ks0nq11m"; depends=[]; }; @@ -12080,7 +12115,7 @@ in with self; { metamer = derive2 { name="metamer"; version="0.2.0"; sha256="0wdhr83mph9v7vb9mfhf7lcwmp0smz72sniass7kxcbj6j9hga4g"; depends=[FNN progress]; }; metamicrobiomeR = derive2 { name="metamicrobiomeR"; version="1.2"; sha256="0fgdjy2s47pqmb9x79a4sf0kn4hbc49rd41jnzw0d3ll1l9kwy7f"; depends=[compositions dplyr gamlss gdata ggplot2 gridExtra lme4 lmerTest matrixStats meta plyr tidyr zCompositions]; }; metamisc = derive2 { name="metamisc"; version="0.2.5"; sha256="1fg6k2sr74iprjx2bwqqfnp67c493fkilncy2nbynv4sqmbl8s0i"; depends=[dplyr ggplot2 lme4 metafor mvtnorm plyr pROC]; }; - metan = derive2 { name="metan"; version="1.15.0"; sha256="140ldg9w2z3nc04dwzw6lpnn1an28mb7013bfr72rxhkbh8wravl"; depends=[dplyr GGally ggforce ggplot2 ggrepel lme4 lmerTest magrittr mathjaxr patchwork purrr rlang tibble tidyr tidyselect]; }; + metan = derive2 { name="metan"; version="1.16.0"; sha256="09qa46069xb7vrmp8r0nq84fvwzzx5bqav3x3cfc2shxm6dxmf0g"; depends=[dplyr GGally ggforce ggplot2 ggrepel lme4 lmerTest magrittr mathjaxr patchwork purrr rlang tibble tidyr tidyselect]; }; metansue = derive2 { name="metansue"; version="2.4"; sha256="1ja7a3z4d764a1rcf256kmzf8xc6d8x7mqq12vzznw5ks8r2p9hk"; depends=[]; }; metap = derive2 { name="metap"; version="1.6"; sha256="0z9fr4s8h6s6r50d1v29kyliflp2cws4n9zafhhpvfkl84k0488n"; depends=[lattice mathjaxr mutoss Rdpack TFisher]; }; metapack = derive2 { name="metapack"; version="0.1.4"; sha256="0n7y3jvjrbvq1d58cbw5b5pb10v02w1314yq0n88snc70j9s2mq3"; depends=[BH Formula ggplot2 gridExtra Rcpp RcppArmadillo RcppProgress]; }; @@ -12157,7 +12192,6 @@ in with self; { micar = derive2 { name="micar"; version="1.1.2"; sha256="1zx2x6r4m0ihwhjd2n4rmk9da7p9bpadk65h7mbb0rgvwrspkzf8"; depends=[httr jsonlite]; }; mice = derive2 { name="mice"; version="3.13.0"; sha256="11cpyqlilakan2pwjzacb9jjlazazsqdngy237nnrj8j6mky822i"; depends=[broom cpp11 dplyr generics lattice Rcpp rlang tidyr]; }; miceFast = derive2 { name="miceFast"; version="0.7.1"; sha256="1vlm19b9q6539c9rqa852kkva1j3cfwbxy2y9x8khb8pqk1w0bb7"; depends=[assertthat data_table dplyr ggplot2 magrittr Rcpp RcppArmadillo tidyr UpSetR]; }; - miceMNAR = derive2 { name="miceMNAR"; version="1.0.2"; sha256="1s607icaf3c25mn8xdi3zkzmm8m7qd9a6vjdlz5j7ig2gc9f2y2d"; depends=[GJRM mice mvtnorm pbivnorm sampleSelection]; }; miceRanger = derive2 { name="miceRanger"; version="1.5.0"; sha256="0xm8fcvjf6pcfyyk1gnwfdac44q6b33i5byja9lqxy7vygbxmgxd"; depends=[corrplot crayon data_table DescTools FNN foreach ggplot2 ggpubr ranger]; }; miceadds = derive2 { name="miceadds"; version="3.11-6"; sha256="1xh977xralyivmi57c11rpbbbx24dhzwfnjq4m55ikzv2b40678j"; depends=[mice mitools Rcpp RcppArmadillo]; }; micemd = derive2 { name="micemd"; version="1.8.0"; sha256="1vds5199bv3lgpn3qzra6gakvabyz6a83p55xjxgs9zk9chgf9yw"; depends=[abind digest jomo lme4 MASS Matrix mice mvmeta mvtnorm nlme]; }; @@ -12167,7 +12201,7 @@ in with self; { microPop = derive2 { name="microPop"; version="1.5"; sha256="1gikp20n2b50fkybbg2hmlfjdcm0imjwygjsjnyv3wrjzypm2i78"; depends=[deSolve]; }; microSTASIS = derive2 { name="microSTASIS"; version="0.1.0"; sha256="09zyf80l964lfil56vln70i0r2d8ry2ffx4zz3f3xcka22m94r78"; depends=[crayon fmsb future future_apply ggplot2 ggside progressr reshape2 stringr]; }; microbats = derive2 { name="microbats"; version="0.1-1"; sha256="1mahvblaiwg1xk2s34wd1ic8ddc9lh6g0azik2pd97bsf0krkyw8"; depends=[]; }; - microbenchmark = derive2 { name="microbenchmark"; version="1.4.8"; sha256="0gqkxf31my5dchv81yjnvk9gpziihc4p6dbvw01586xbi16vdbp1"; depends=[]; }; + microbenchmark = derive2 { name="microbenchmark"; version="1.4.9"; sha256="1lpzpffnjiwnxxl0jhrvyj88fvxqksnpccbpq953xwqf6ypjqga4"; depends=[]; }; microbial = derive2 { name="microbial"; version="0.0.20"; sha256="1y5vhh4sq22c4wxb3c9rzj53niacn97vfg0484d9wkcjb179lc79"; depends=[broom DESeq2 dplyr edgeR ggplot2 ggpubr magrittr phangorn phyloseq plyr randomForest rlang rstatix S4Vectors SummarizedExperiment testthat tidyr vegan]; }; microclass = derive2 { name="microclass"; version="1.2"; sha256="0q6mn1hbi6nk29x2x5a1wcdqp06mjggbrpglk5i8pp4gkqlzhl8q"; depends=[dplyr microcontax microseq Rcpp RcppEigen RcppParallel rlang stringr tibble]; }; microclustr = derive2 { name="microclustr"; version="0.1.0"; sha256="04xn8p4wgmxq1jbxawq0rhx6l7y1kddlbdfid8zsi4x4arkz7hvp"; depends=[Rcpp]; }; @@ -12196,7 +12230,7 @@ in with self; { migration_indices = derive2 { name="migration.indices"; version="0.3.0"; sha256="0h0yjcj70wzpgrv3wl1f2h2wangh1klsllq0i0935plgzw736mwd"; depends=[calibrate]; }; migui = derive2 { name="migui"; version="1.1"; sha256="1qchjsc7ff2b6s9w6ncj9knjv6pyp90jd4jxljn2rr1ix1gc45za"; depends=[arm gWidgets2 mi]; }; miic = derive2 { name="miic"; version="1.5.3"; sha256="1wrvgzi91jirn5n5fvvbhhpcga7l75h149sz1g1r1wbci181l3bg"; depends=[ppcor Rcpp scales]; }; - mikropml = derive2 { name="mikropml"; version="1.1.1"; sha256="0hkxb21yamvarxlh5m0356a02ijdbq8g1dnmjjd7lcndf9pxzg9d"; depends=[caret dplyr e1071 glmnet kernlab MLmetrics randomForest rlang rpart xgboost]; }; + mikropml = derive2 { name="mikropml"; version="1.2.0"; sha256="1h4nqmm7cqfsv3dff7akpy3mx3smdgdwak62l5h7lmisfj6xyk87"; depends=[caret dplyr e1071 glmnet kernlab MLmetrics randomForest rlang rpart xgboost]; }; milorGWAS = derive2 { name="milorGWAS"; version="0.3"; sha256="1z44sbs3lmrx32wagk5rr3rc2k8iqq860fz0bi983llmgmhaqdxn"; depends=[gaston Rcpp RcppEigen]; }; milr = derive2 { name="milr"; version="0.3.1"; sha256="03hihr1w5j0mlvi5vm9m5vb9i6nyb6lsji3xmv0chpczabd85mzy"; depends=[glmnet numDeriv pipeR Rcpp RcppArmadillo RcppParallel]; }; mime = derive2 { name="mime"; version="0.12"; sha256="0j9qbq9jfsp61h2d0xmb87pa2wi8nhb1h2wih7l5drf1sr8i0059"; depends=[]; }; @@ -12251,6 +12285,7 @@ in with self; { missMethods = derive2 { name="missMethods"; version="0.2.0"; sha256="0rsx7fdg0k8ajpj81ybl2jc9s8sprc2si6zx7mkvcqgw9iacrdik"; depends=[]; }; missRanger = derive2 { name="missRanger"; version="2.1.3"; sha256="1kk64q9ip6hhjcyrvnm5yd8ikilrvvw1vjz8166c6jb8xrqwbb2v"; depends=[FNN ranger]; }; missSBM = derive2 { name="missSBM"; version="1.0.1"; sha256="1hy9q27sqgasd60davx53z33m8f3ilzrlqv0xcrpd84l8ahi6wrk"; depends=[future_apply ggplot2 igraph magrittr Matrix nloptr R6 Rcpp RcppArmadillo rlang sbm]; }; + missSOM = derive2 { name="missSOM"; version="1.0.0"; sha256="02hi37jha49dppcv5cyzpcayb4b7mpmcp56nspbrlnxp9dgy7pim"; depends=[kpodclustr Rcpp]; }; missingHE = derive2 { name="missingHE"; version="1.4.1"; sha256="1bxpp88rwnv4fc9lm606cczj1dx63p507sqsr71dblgsfw3aw7xy"; depends=[bayesplot BCEA coda ggmcmc ggplot2 ggpubr ggthemes gridExtra loo mcmcplots mcmcr R2jags]; }; mistat = derive2 { name="mistat"; version="2.0.3"; sha256="068ycnnkqcmf3sracsa279lggyc1qxdkpcba7ghax0xl4y505yxj"; depends=[]; }; mistr = derive2 { name="mistr"; version="0.0.4"; sha256="0jb0qmraghn8gy1bxmfh0jnbfp0b38bxidl0cxkxg9lbfmi0irlq"; depends=[bbmle]; }; @@ -12315,7 +12350,7 @@ in with self; { mleur = derive2 { name="mleur"; version="1.0-6"; sha256="0mddphq3b6y2jaafaa9y41842kcaqdl3dh7j4pva55q2vcjcclj7"; depends=[fGarch lattice stabledist urca]; }; mlf = derive2 { name="mlf"; version="1.2.1"; sha256="09ihnibpknpp26hdlbxyr99yz7z0n8qpsjs5aq3zngng0yh3wdn9"; depends=[]; }; mlfit = derive2 { name="mlfit"; version="0.5.3"; sha256="0nyk5vmy2gkpz022djacy80gibskv96z0rsmjz2rw14zhc5kizsh"; depends=[BB dplyr forcats hms kimisc lifecycle Matrix plyr rlang tibble wrswoR]; }; - mlflow = derive2 { name="mlflow"; version="1.20.2"; sha256="1m11vn9ip9fsd7amn1j0l7bsrb1jiapnspbbnpbcg860z37jaix9"; depends=[base64enc forge fs git2r glue httpuv httr ini jsonlite openssl processx purrr reticulate rlang swagger tibble withr xml2 yaml zeallot]; }; + mlflow = derive2 { name="mlflow"; version="1.21.0"; sha256="1rdgrhxmfnx5wyq2xg5p373janz72q89ghg827hrazj70c1zphil"; depends=[base64enc forge fs git2r glue httpuv httr ini jsonlite openssl processx purrr reticulate rlang swagger tibble withr xml2 yaml zeallot]; }; mlgt = derive2 { name="mlgt"; version="0.16"; sha256="1nvdq6mvgr39ikkf73aggsb6pmbw132injj8fdkr8hgcmwm6lgd9"; depends=[seqinr]; }; mlica2 = derive2 { name="mlica2"; version="2.1"; sha256="0c3m1zd9x99n6lw12hfzmd59355z51xa8rhg1h7qwfn9p86r826f"; depends=[]; }; mlmRev = derive2 { name="mlmRev"; version="1.0-8"; sha256="0ln4nazhc1prnlmvhfzhx268vx3klb0xnz1nsiwh0pwyskskyzym"; depends=[lme4]; }; @@ -12349,7 +12384,7 @@ in with self; { mlr3tuningspaces = derive2 { name="mlr3tuningspaces"; version="0.0.1"; sha256="1fr536xy23rglmy4rlk3fb7d29hb5s3vkyx530s7d8i1gwxad9xv"; depends=[checkmate data_table mlr3 mlr3misc mlr3tuning paradox R6]; }; mlr3verse = derive2 { name="mlr3verse"; version="0.2.2"; sha256="1rgvhxjqxdrdhbslfxcli4mlafgvswc164yzv7rms60asvq1sndw"; depends=[bbotk data_table mlr3 mlr3cluster mlr3data mlr3filters mlr3fselect mlr3learners mlr3misc mlr3pipelines mlr3proba mlr3tuning mlr3viz paradox]; }; mlr3viz = derive2 { name="mlr3viz"; version="0.5.7"; sha256="1agl6s6i9l7mk8mrvmnz7csqsc77dwjnymlrqcy5vxddr2nfc47l"; depends=[checkmate data_table ggplot2 mlr3misc]; }; - mlrCPO = derive2 { name="mlrCPO"; version="0.3.7-2"; sha256="01n36nh9brb5kkgmxblmcz86gzrrjgg1bi0xmkyyx1qp57qx33p6"; depends=[backports BBmisc checkmate mlr ParamHelpers stringi]; }; + mlrCPO = derive2 { name="mlrCPO"; version="0.3.7-3"; sha256="0vq163ca446l2sb3jbn8wmvj26zsrpz52b1w7d8xgb0jjf2jhp91"; depends=[backports BBmisc checkmate mlr ParamHelpers stringi]; }; mlrMBO = derive2 { name="mlrMBO"; version="1.1.5"; sha256="1f2ryd0mrlnnwxgwiria2sxqkb09kskfqjzsh32cbxh6ml4d3fbs"; depends=[backports BBmisc checkmate data_table lhs mlr parallelMap ParamHelpers smoof]; }; mlrintermbo = derive2 { name="mlrintermbo"; version="0.5.0"; sha256="1nyaqf6vkckdh7jb27iwv5dnvrh4bp0kkc5jzbqkyi8af11phg1l"; depends=[backports bbotk callr checkmate data_table lhs mlr3misc mlr3tuning paradox R6]; }; mlsbm = derive2 { name="mlsbm"; version="0.99.2"; sha256="1p6fflhjbbyzx51hb77aak1kdabjrmzd7b47vdcanhb0vd263aby"; depends=[Rcpp RcppArmadillo]; }; @@ -12461,7 +12496,7 @@ in with self; { momr = derive2 { name="momr"; version="1.1"; sha256="091vzaw8dm29q89lg2iys25rbg2aslgdn9sk06x038nngxdrn95r"; depends=[gplots Hmisc nortest]; }; monaco = derive2 { name="monaco"; version="0.2.1"; sha256="1wwfwxv8064icdi6fhyrp3mrpv37x0cnnwdb5k1b88jfzb7j1hb6"; depends=[htmltools htmlwidgets rstudioapi shiny]; }; mondate = derive2 { name="mondate"; version="0.10.02"; sha256="18nsqldj1vvv882nh2dyilqvz1jbhqkz3q69cpjq1xfcj0z88qxz"; depends=[]; }; - mongolite = derive2 { name="mongolite"; version="2.3.1"; sha256="0r7b5cxy5mjxsm9kqpaqqs8v0z9ysxhgbzy4y016hj9sn25ix60s"; depends=[jsonlite mime openssl]; }; + mongolite = derive2 { name="mongolite"; version="2.4.1"; sha256="0y5g55nkmvgc5wd6lld1435g0szr0niphlnc96fm9pla4f6c4c0a"; depends=[jsonlite mime openssl]; }; mongopipe = derive2 { name="mongopipe"; version="0.1.1"; sha256="081l6d1kwh30wq5kwz9dd2a9221x9139x1xbvfiqixwv0g9sjjy0"; depends=[jsonlite magrittr rlang]; }; monitoR = derive2 { name="monitoR"; version="1.0.7"; sha256="1h1g0m1j13mz37xxwck4s7a0bfqvi0nrzfw60j7bkzaah8zxcc9n"; depends=[tuneR]; }; monmlp = derive2 { name="monmlp"; version="1.1.5"; sha256="19cx60csm8mnf6ksg64vlhi8wi1c7bmv9l55y9zmaljblr0kmzxf"; depends=[optimx]; }; @@ -12587,7 +12622,7 @@ in with self; { mssqlR = derive2 { name="mssqlR"; version="1.0.0"; sha256="0qdnm7cx9cg14vfcnkmcjqr1jpxsw8xlrbnxldvzz44mzv2n878l"; depends=[magrittr RODBC]; }; mstDIF = derive2 { name="mstDIF"; version="0.1.6"; sha256="0zhslqzvvk8wbgqvcipmzhy94awwfmkv5yfl812m8wmwgpkcqzpb"; depends=[eRm expm Matrix mirt PP scDIFtest]; }; mstR = derive2 { name="mstR"; version="1.2"; sha256="0v8cv9pswkvw0lva6jx5vavsb20dawgq83gn4rgydyhvigcl5szd"; depends=[]; }; - mstate = derive2 { name="mstate"; version="0.3.1"; sha256="11i3p7fph8nbnfis1m7rdrq32qryaajv2wrkxk1x6k17zkh4rq6i"; depends=[data_table lattice magrittr RColorBrewer rlang survival viridis]; }; + mstate = derive2 { name="mstate"; version="0.3.2"; sha256="054dzrd5b0xjjjl7862q3aq1jwgrxbkqz7zpvbdirqsld3zksirw"; depends=[data_table lattice RColorBrewer rlang survival viridisLite]; }; mstherm = derive2 { name="mstherm"; version="0.4.7"; sha256="04jrp0w17svwmrvx356jmh04npbwhk9nvfy3r39vqr82yrvn6jip"; depends=[doParallel foreach nls2 plotrix RColorBrewer]; }; mstknnclust = derive2 { name="mstknnclust"; version="0.3.1"; sha256="0bg38gnaf2jjva8l2wk862ch2cpqvw7szvvvpb2bnz02fp795p3g"; depends=[igraph]; }; mstrio = derive2 { name="mstrio"; version="11.3.0.1"; sha256="1qjqxrgy2amm0ikfixkqjix3d6jzh1y3abnbzq41ibl5qiz8pjxy"; depends=[crul data_table httr jsonlite openssl R6 rstudioapi shiny shinyjs]; }; @@ -12707,7 +12742,7 @@ in with self; { mvPot = derive2 { name="mvPot"; version="0.1.5"; sha256="18kzlz42ridmwjrai6f598vvhmvk7gwyp869qjqclbf9jpc1xlcx"; depends=[evd gmp MASS numbers]; }; mvProbit = derive2 { name="mvProbit"; version="0.1-10"; sha256="1iy249mc5fi72l0lcvjrn40fn6q1m8hj8njcl0li2z6lzydifkd4"; depends=[abind bayesm maxLik miscTools mvtnorm]; }; mvQuad = derive2 { name="mvQuad"; version="1.0-6"; sha256="016477dhjdkqiadc631vzpbp967mn4yli6by3s1k348mlfirwsi3"; depends=[data_table statmod]; }; - mvSLOUCH = derive2 { name="mvSLOUCH"; version="2.7"; sha256="1vxhzpnpn53lm39d0qbq7fjyd888f375w6pnsl6lzxzqbm9kiy12"; depends=[abind ape Matrix matrixcalc mvtnorm ouch PCMBase TreeSim]; }; + mvSLOUCH = derive2 { name="mvSLOUCH"; version="2.7.2"; sha256="0c8gf6rv5ycw6yh73zs3f76j6x3lblpwn2rswgi3mmjh073ij7ay"; depends=[abind ape Matrix matrixcalc mvtnorm ouch PCMBase TreeSim]; }; mvShapiroTest = derive2 { name="mvShapiroTest"; version="1.0"; sha256="0zcv5l28gwipkmymk12l4wcj9v047pr8k8q5avljdrs2a37f74v1"; depends=[]; }; mvabund = derive2 { name="mvabund"; version="4.1.12"; sha256="107pwv2bwird1a98chcnbld2wqj9prkf4pkncyrrp304zpdkkby1"; depends=[MASS Rcpp RcppGSL statmod tweedie]; }; mvbutils = derive2 { name="mvbutils"; version="2.8.232"; sha256="0awd0jy492ha321c20kmmgl20kqphdmrmswakc0rq6h8z9d55kdg"; depends=[]; }; @@ -12738,6 +12773,7 @@ in with self; { mwTensor = derive2 { name="mwTensor"; version="0.99.5"; sha256="11zn2g1gxl1x6ci3wqkr7a37jwc4rdcbgdagy5gf3jgkmmr5an3w"; depends=[ccTensor ica igraph MASS nnTensor rTensor]; }; mwa = derive2 { name="mwa"; version="0.4.3"; sha256="100d3c1070ir64iv848kws5fna141gcq5p66ip873cr632a042qs"; depends=[cem MASS rJava]; }; mwaved = derive2 { name="mwaved"; version="1.1.8"; sha256="092sqd9harx289bgghw9x495llzhab0vkgkjka5jhi4ad1rfk3vh"; depends=[Rcpp shiny]; }; + mwcsr = derive2 { name="mwcsr"; version="0.1.0"; sha256="0v0c5mlxfy804zp6ykjjn6rhz5ji1h3vnm97cwpdr0r016nvvr9j"; depends=[igraph Rcpp]; }; mwshiny = derive2 { name="mwshiny"; version="2.1.0"; sha256="0c1a0d9qnaszffhzanmk31mdxqi7j3rn6bk7a3dwg4bq1da3rlgl"; depends=[htmltools shiny]; }; mxkssd = derive2 { name="mxkssd"; version="1.1"; sha256="0m9763dqrk8qkrvp18bsv96jv0xhc2m8sbxdk6x3w6kdjcl663p2"; depends=[]; }; mxmmod = derive2 { name="mxmmod"; version="1.1.0"; sha256="0x4m6y4ngb3vm9xpvwvn1zcbch2fhz8pb267hg2sb3kk5m504xxq"; depends=[OpenMx]; }; @@ -12800,7 +12836,7 @@ in with self; { ncappc = derive2 { name="ncappc"; version="0.3.0"; sha256="0bf00iskrd3x43839bwn957mi3qvm2dhcmqa7hl1ib0gp2r1cnzx"; depends=[bookdown Cairo dplyr ggplot2 gridExtra gtable knitr lazyeval magrittr PopED purrr readr reshape2 rlang rmarkdown scales tibble tidyr xtable]; }; ncar = derive2 { name="ncar"; version="0.4.4"; sha256="1b37isgj7njpyh3js2kyl6vil9v8azh7n04m5yn4pcvyz02sqkx8"; depends=[NonCompart rtf]; }; ncbit = derive2 { name="ncbit"; version="2013.03.29"; sha256="0f07h8v68119rjvgm84b75j0j7dvcrl6dq62vp41adlm2hgjg024"; depends=[]; }; - ncdf4 = derive2 { name="ncdf4"; version="1.17"; sha256="1xls44ln2zjrrlimxl8v4bk2ni3g45c9j0gxdnjx31rikmrc95fv"; depends=[]; }; + ncdf4 = derive2 { name="ncdf4"; version="1.17.1"; sha256="1fyjhp2zkvp7ls1sxn623far7473lpkfsqqvj3a1fczpmqs6iw4m"; depends=[]; }; ncdf4_helpers = derive2 { name="ncdf4.helpers"; version="0.3-6"; sha256="0qnm41rbxb6v7aqh1mdkjhcc2rhs4wg6wmrllldzd99mzz8slv1r"; depends=[abind ncdf4 PCICt]; }; ncdfgeom = derive2 { name="ncdfgeom"; version="1.1.1"; sha256="173hfbvp6pzyxmy0xwir02nmhifmfzl6jipn5pp41c947gyg8vwx"; depends=[dplyr ncmeta RNetCDF sf]; }; ncdump = derive2 { name="ncdump"; version="0.0.3"; sha256="09g98mzpky32z41jf23ahzhyv34l34y1gqq99j2hl4pqlvvhxs9i"; depends=[dplyr ncdf4]; }; @@ -12813,11 +12849,10 @@ in with self; { ndjson = derive2 { name="ndjson"; version="0.8.0"; sha256="0lvzbgfi1sg4kya1mvv67z14qk3vz9q57x22qh57xq8ampdkg812"; depends=[data_table Rcpp tibble]; }; ndl = derive2 { name="ndl"; version="0.2.18"; sha256="0b235v6jf98rrqp5aqw3jkk7mq8dbqmhb758zbzza1mavh4n2k7s"; depends=[Hmisc MASS Rcpp]; }; ndtv = derive2 { name="ndtv"; version="0.13.2"; sha256="0symd0rwzk8kcq7f0flbw3pnyigybgsypjaaq5b5p1pjm1dz0c8j"; depends=[animation base64 jsonlite MASS network networkDynamic sna statnet_common]; }; - nearfar = derive2 { name="nearfar"; version="1.2"; sha256="116rq797a5fascirz8xg465fywjf40j1k5czryvqzpik0if0w00r"; depends=[car GenSA MASS nbpMatching]; }; neariso = derive2 { name="neariso"; version="1.0.1"; sha256="1b2gnws75kkqsi8mg9n0zzdaawx57a6zz47cswabj5m6nb09ikh8"; depends=[]; }; neat = derive2 { name="neat"; version="1.2.3"; sha256="0mdv47l50wzxnjfk1sway7gzpkyf57svqip16fqn0hrc1fsrifbn"; depends=[igraph]; }; neatRanges = derive2 { name="neatRanges"; version="0.1.3"; sha256="1zfp6f1q7m0bks0shvzr120nd5jxba28xhi7vrd55qfy7g72167g"; depends=[data_table Rcpp]; }; - neatStats = derive2 { name="neatStats"; version="1.7.3"; sha256="0zkx22irhjkds1l2ypj8nkc1yz15pc90rbfgy1y6jh5l6a3dgdhx"; depends=[BayesFactor bayestestR car Exact ez ggplot2 ggpubr logspline MBESS plyr PoweR pROC viridis]; }; + neatStats = derive2 { name="neatStats"; version="1.8.1"; sha256="0kxhl4h3xq6qg4fpxxji3j3p0yg5g271c3p9zbngkp7q8fiqz5vd"; depends=[BayesFactor bayestestR car Exact ez ggplot2 ggpubr logspline MBESS plyr PoweR pROC viridis]; }; neatmaps = derive2 { name="neatmaps"; version="2.1.0"; sha256="1kz1na3fzpd8vkxmpp5rz8ksyf8q2wk456csiii82winv9a2zxc9"; depends=[ConsensusClusterPlus dplyr ggplot2 heatmaply igraph]; }; needmining = derive2 { name="needmining"; version="0.1.1"; sha256="0qsj0ihjchrnl4s44rpsizbcz033z00dmzvic2y1msv0bnfawl6p"; depends=[randomForest rtweet SnowballC SparseM stringr tau tm]; }; needs = derive2 { name="needs"; version="0.0.3"; sha256="16dkjpijz3rz7kd5ggxsdg55iwd42nll1vk6g5ix4xdbqrx6cp9x"; depends=[]; }; @@ -13209,14 +13244,14 @@ in with self; { ontologyIndex = derive2 { name="ontologyIndex"; version="2.7"; sha256="0j3h1spqwjhh1wbmwivmqcyi042yy7d565c3kxgn70xrmy693x1k"; depends=[]; }; ontologyPlot = derive2 { name="ontologyPlot"; version="1.6"; sha256="0n51x2im134wq3a54wrv02j1pgkpm1qcgb9hd0y6fchz43i039j1"; depends=[ontologyIndex paintmap Rgraphviz]; }; ontologySimilarity = derive2 { name="ontologySimilarity"; version="2.5"; sha256="035z572lbsfcnr9c0hl8gir1kgk0dw8dxzr3v8dqd93k6jr6kaxb"; depends=[ontologyIndex Rcpp]; }; - oolong = derive2 { name="oolong"; version="0.4.0"; sha256="0b8yx0fl5lirfmpwmc9ip6n1253rkzq9r9423nla57rc6xzzply8"; depends=[cli cowplot digest dplyr ggplot2 irr keyATM miniUI purrr quanteda R6 shiny text2vec tibble]; }; + oolong = derive2 { name="oolong"; version="0.4.1"; sha256="16f5r2z9p87k3pi643s63nxxnh7gn4x70m5jpk48hwb2s1rdar9h"; depends=[cli cowplot digest ggplot2 irr keyATM purrr quanteda R6 shiny tibble]; }; oompaBase = derive2 { name="oompaBase"; version="3.2.9"; sha256="1cmw2s5dznmv675484jgvkzgvi6vhg0zbxsq6zhpqsisf672pjhl"; depends=[cluster]; }; oompaData = derive2 { name="oompaData"; version="3.1.1"; sha256="0by9qfxlx6fdmp12qnphlli5hdn5balvx4ckg64fw6vwa291g7b0"; depends=[]; }; ooplah = derive2 { name="ooplah"; version="0.1.0"; sha256="0hrbpidcrnvm14qdjhcz4j4im1caydxkj4k9zmqs7dq3wv10rgr9"; depends=[R6]; }; opGMMassessment = derive2 { name="opGMMassessment"; version="0.2.1"; sha256="0yrr2cw84gv3fj7n4l1z2p7vpcias1f33mp3ca2ha0a0ljpfa4a4"; depends=[AdaptGauss caTools cluster ClusterR DataVisualizations DistributionOptimization doParallel dplyr foreach ggplot2 mclust mixAK mixtools multimode NbClust rlang]; }; opalr = derive2 { name="opalr"; version="3.0.2"; sha256="0nwa77l4d4zz3jxmfgm8h8k823lvcvjzbk3i6ahscrhzw2ky2phc"; depends=[httr jsonlite labelled mime progress]; }; opdisDownsampling = derive2 { name="opdisDownsampling"; version="0.7.0"; sha256="0vk99psbbks136h3md73g7w3rwlx3mgkx2lahmv536kf8v4fj2bp"; depends=[benchmarkme caTools doParallel foreach memuse pracma twosamples]; }; - openCR = derive2 { name="openCR"; version="2.2.0"; sha256="1xka4nzm12p05i75jx1qqg8qkmzyhwm02lrw0n860p13ydxcwgp7"; depends=[abind BH MASS nlme plyr Rcpp RcppParallel secr stringr]; }; + openCR = derive2 { name="openCR"; version="2.2.1"; sha256="0v3n1w0lxbz7hf68b2dp0vsgvby9vywd35w1n7d78gwznjlisfk8"; depends=[abind BH MASS nlme plyr Rcpp RcppParallel secr stringr]; }; openEBGM = derive2 { name="openEBGM"; version="0.8.3"; sha256="120lp7fy6abj6f8g6naq4018d0dfzz6bq3dlh0xdhd4iclb7pplv"; depends=[data_table ggplot2]; }; openMSE = derive2 { name="openMSE"; version="1.0.0"; sha256="15jp9hybnkwmnkcqawhpd3y3imq6wfxxzxzh90yx4cvzky36hf89"; depends=[crayon DLMtool MSEtool SAMtool]; }; openNLP = derive2 { name="openNLP"; version="0.2-7"; sha256="15yl74wv6w1d2wwpn1xlkkpam3c62977gnqal651fv623v29gg35"; depends=[NLP openNLPdata rJava]; }; @@ -13232,6 +13267,7 @@ in with self; { opencv = derive2 { name="opencv"; version="0.2.1"; sha256="1zb6qdvlgylzm9afq8ybcrn2w5wcym6zi4b36sycp4clbc7gncq5"; depends=[magrittr Rcpp]; }; opendatatoronto = derive2 { name="opendatatoronto"; version="0.1.4"; sha256="0ggf25ry31xz69fl95cglg45ld8w7rc83wci609fmb63bhj8dzlg"; depends=[ckanr curl magrittr readxl sf tibble xml2]; }; opendotaR = derive2 { name="opendotaR"; version="0.1.4"; sha256="17cygsw3nkg6zincfrcdh1509rlz3n5zrv9wvv7mjngm61sn79nf"; depends=[dplyr jsonlite lubridate]; }; + openeo = derive2 { name="openeo"; version="1.1.0"; sha256="1vdga91jiw2dxfvjwr12kip60m8pdcvsan3g9cn9hhhpxsgidw6q"; depends=[base64enc httr jsonlite lubridate R6]; }; openintro = derive2 { name="openintro"; version="2.2.0"; sha256="0jvgbb9az73sidr58lpz2p8gjigmi4873dpvzqbv7r8jzr1vqhvz"; depends=[airports cherryblossom ggplot2 readr rmarkdown tibble usdata]; }; openmetrics = derive2 { name="openmetrics"; version="0.3.0"; sha256="0bcljsirlkxn0h87j2g2jb6spcik84h7nms06mcj40ckx188yr82"; depends=[R6]; }; openssl = derive2 { name="openssl"; version="1.4.5"; sha256="1xy1w0rljzsgvsg91fh9hs6h9rx58mza1vg6rig9ykp9m2ml3hag"; depends=[askpass]; }; @@ -13371,7 +13407,7 @@ in with self; { overviewR = derive2 { name="overviewR"; version="0.0.7"; sha256="1y8iqgyhppl2w9z59azi3h1kgzrw5a1zqw09zyjp0ghlvpjbn9cn"; depends=[dplyr ggplot2 tibble]; }; owd = derive2 { name="owd"; version="1.0.6"; sha256="08f1zzlnkfdzm5rlw14qm6yvn68j2yas21zjsy31pc59rh3lzkyh"; depends=[]; }; owdbr = derive2 { name="owdbr"; version="1.0.1.1"; sha256="0q4654zr5aw04sssy7127vafry72b7p3d8i44fqvqg3055awin0i"; depends=[data_table dplyr httr jsonlite magrittr tibble]; }; - owidR = derive2 { name="owidR"; version="1.0.0"; sha256="192ln11422s6ckfzy4ncw1pzbmbss7kjc1glcpz83bzqqrfrm01a"; depends=[curl dplyr forcats ggplot2 ggrepel htmltools jsonlite leaflet magrittr purrr readr rlang rvest scales sf stringr xml2]; }; + owidR = derive2 { name="owidR"; version="1.1.0"; sha256="1i9lqmabwk8nnva428syfk3zbr60s6crx6dq8y8i4272xprqd5dk"; depends=[curl dplyr forcats ggplot2 ggrepel htmltools jsonlite leaflet magrittr purrr readr rlang rvest scales sf stringr xml2]; }; owmr = derive2 { name="owmr"; version="0.8.2"; sha256="0qlb5aw6n06yf8y2gd2fjp8kp3w0xgqh3fka7rxqndgvaqmin1a6"; depends=[httr jsonlite magrittr plyr tibble tidyr]; }; ows4R = derive2 { name="ows4R"; version="0.1-5"; sha256="0zl6nvcrzjcaz43ji2a6ym3mvfzfvf8lyb29hg8sidribr6js3nk"; depends=[geometa httr openssl R6 rgdal sf XML]; }; oxcAAR = derive2 { name="oxcAAR"; version="1.1.1"; sha256="1szifw978qr7v8n178jhg4ap2jwvfnwjl2izbbiydwx8q1fyj2q4"; depends=[jsonlite stringi stringr]; }; @@ -13410,7 +13446,7 @@ in with self; { packrat = derive2 { name="packrat"; version="0.7.0"; sha256="1hnwhdgqljqs3m7c4rjlyndyc0k85jpa4rbfymxkm3zjg3yy3g78"; depends=[]; }; pacman = derive2 { name="pacman"; version="0.5.1"; sha256="0z7gngd6h83cpjhq1vg75wvzhdjbgjh7gj5d4zvvi9gd2lmagjcy"; depends=[remotes]; }; paco = derive2 { name="paco"; version="0.4.2"; sha256="0p02fdc5f7d7sbdvxill8jln76p1ndiw95k6s9j41slfriq647vd"; depends=[ape plyr vegan]; }; - pacotest = derive2 { name="pacotest"; version="0.4.0"; sha256="1m52spl856agk5y00s6d7n07sjv775calgpksajdsn1ipjfxs5nk"; depends=[ggplot2 gridExtra numDeriv Rcpp RcppArmadillo VineCopula]; }; + pacotest = derive2 { name="pacotest"; version="0.4.1"; sha256="1ry0lwzphgivmlc8swhk6l26q4ca6x36rm8r7vvjb64y0fvayqk5"; depends=[ggplot2 gridExtra numDeriv Rcpp RcppArmadillo VineCopula]; }; pacs = derive2 { name="pacs"; version="0.3.5"; sha256="0a8k6i7v26r4njbpcy3zp556kxn1p9rx6v7375k1r4w2b49jba6k"; depends=[memoise stringi xml2]; }; pacviz = derive2 { name="pacviz"; version="1.0.1"; sha256="0afh10zf32lk6gh42y6mjfgdw2blhjavhbq2n3s8h62w9blfad5g"; depends=[circlize e1071 plotrix]; }; padr = derive2 { name="padr"; version="0.6.0"; sha256="1l8i40vqpy033j8nc8fqp9ymn378bhyy4hkj8xhk94npv7jibqkk"; depends=[dplyr lubridate Rcpp rlang]; }; @@ -13423,6 +13459,7 @@ in with self; { pageviews = derive2 { name="pageviews"; version="0.5.0"; sha256="1fhlm2y288wx625y0glxybjb0xv9sqvvln35jqlwqq38h3grcpqd"; depends=[curl httr jsonlite]; }; pagoda2 = derive2 { name="pagoda2"; version="1.0.6"; sha256="13dknc7qc1wfs6pjiq4kdwx1gxqx9ana3zm62j614kdd5sq8syzw"; depends=[dendsort drat fastcluster igraph irlba magrittr MASS Matrix mgcv N2R plyr R_utils R6 Rcpp RcppArmadillo RcppEigen RcppProgress rjson rlang RMTstat Rook Rtsne sccore urltools]; }; pagoo = derive2 { name="pagoo"; version="0.3.9"; sha256="0z8k7hcnc4galr1afwk7zjdjbn298jgzawc09afq6pnhl5mjiya0"; depends=[BiocGenerics Biostrings dendextend DT GenomicRanges ggfortify ggplot2 heatmaply magrittr plotly R6 reshape2 S4Vectors shiny shinydashboard shinyWidgets vegan]; }; + painbow = derive2 { name="painbow"; version="1.0.1"; sha256="10c8spknh7sqa4vl0q4bjdwd03nl4qk28hj2qa9sbyb1ryc7p4j9"; depends=[ggplot2]; }; painter = derive2 { name="painter"; version="0.1.0"; sha256="0qr6p13h50rlavcsamxmijfr4dfrbv1k088m28qf8a4gam3ap85b"; depends=[]; }; paintmap = derive2 { name="paintmap"; version="1.0"; sha256="1qw5725yjymxmfhffqjx4lbmzj437c7qwr8xrzmf52f0m28nl3vk"; depends=[]; }; pairedCI = derive2 { name="pairedCI"; version="0.5-4"; sha256="03wf526n3bbr2ai44zwrdhbfx99pxq1nbng9wsbndrdg2ji4dar2"; depends=[]; }; @@ -13572,7 +13609,7 @@ in with self; { pbapply = derive2 { name="pbapply"; version="1.5-0"; sha256="0m8a0ygwl98cs0vcha5gs9f7z8whcplwxhravhs9bfp5hvigxzgg"; depends=[]; }; pbatR = derive2 { name="pbatR"; version="2.2-13"; sha256="01ra1ggdpxdl1xqjdh86qynr5gkgzw01ww6j9bwgx4mj20i6j1ha"; depends=[rootSolve survival]; }; pbbd = derive2 { name="pbbd"; version="1.0.0"; sha256="07g029qw5949500c879iv86zwg2fldqrz8wzfz335jmcinqimgj6"; depends=[ibd]; }; - pbdMPI = derive2 { name="pbdMPI"; version="0.4-3"; sha256="1mxikhr0qfqksr62v5dxvzgqx07391p7ikjk9g2w4xzrzmxs8fc3"; depends=[float rlecuyer]; }; + pbdMPI = derive2 { name="pbdMPI"; version="0.4-4"; sha256="006pm2yn4mdrpwhfflqcybzv41lz7zssrjrcpq5g98zf60p9c07a"; depends=[float rlecuyer]; }; pbdZMQ = derive2 { name="pbdZMQ"; version="0.3-6"; sha256="0yy3x3l04vx13jbjbvkvsc8jdbf0abndjfknszdx3bi18b2chi4r"; depends=[]; }; pbivnorm = derive2 { name="pbivnorm"; version="0.6.0"; sha256="05jzrjqxzbcf6z245hlk7sjxiszv9paadaaimvcx5y5qgi87vhq7"; depends=[]; }; pbixr = derive2 { name="pbixr"; version="0.1.4"; sha256="098fwmar56l8w5r58grirqypdmc2c4hil7bi11z18llja62fncnw"; depends=[dplyr formatR jsonlite stringr textclean xml2 zip]; }; @@ -13606,7 +13643,7 @@ in with self; { pcmabc = derive2 { name="pcmabc"; version="1.1.1"; sha256="1bacxxgcrgsa7h1baybwwinw3n95cx5wkkfm5cb4iscgk910mfmb"; depends=[ape distory geiger mvSLOUCH phangorn TreeSim yuima]; }; pcnetmeta = derive2 { name="pcnetmeta"; version="2.7"; sha256="0jibi4wylxkisgj740xbibjqs60d5xg9my4sx7vshgfl941y9wcv"; depends=[coda rjags]; }; pco = derive2 { name="pco"; version="1.0.1"; sha256="0k1m450wfmlym976g7p9g8arqrvnsxgdpcazk5kh3m3jsrvrcchf"; depends=[]; }; - pcoxtime = derive2 { name="pcoxtime"; version="1.0.2"; sha256="0fyzmah3b1gfcwlspf2gr7iwdrgk1q688z3b545zlmah3d8hy929"; depends=[doParallel foreach ggplot2 pec PermAlgo prodlim Rcpp RcppArmadillo riskRegression survival]; }; + pcoxtime = derive2 { name="pcoxtime"; version="1.0.3"; sha256="04xng5ixmp5jm2m2v3661qvfjnp44xx999hvgv05140qx3i2nmqj"; depends=[doParallel foreach ggplot2 pec PermAlgo prodlim Rcpp RcppArmadillo riskRegression survival]; }; pcr = derive2 { name="pcr"; version="1.2.2"; sha256="1lmgm8k3s7780ivrdj0zk1ninx7b5jffir6q5p2p47h62qqjmp5d"; depends=[ggplot2]; }; pcse = derive2 { name="pcse"; version="1.9.1.1"; sha256="1rb9146vjkf36vc5v3frykmsff7kp6qp1hhmj8pak583in4rz8f8"; depends=[]; }; pcsstools = derive2 { name="pcsstools"; version="0.1.1"; sha256="1vp4lflxzzgjfh1nkkfvnb74pjmbcdgrc1hlakjd8i5rw7swvr20"; depends=[gtools Rdpack]; }; @@ -13633,7 +13670,7 @@ in with self; { pdynmc = derive2 { name="pdynmc"; version="0.9.6"; sha256="0347p0s4zx3y4yp2rzn4zz4lkj32skll2n2wrnb7yxsnhwf94a7f"; depends=[data_table MASS Matrix optimx qlcMatrix Rdpack]; }; peRiodiCS = derive2 { name="peRiodiCS"; version="0.5.0"; sha256="1366gmn6qfciwcjsfnbl3hfa16ffn11g00fm0kv74ilvm3nnawk3"; depends=[Hmisc rms]; }; peRspective = derive2 { name="peRspective"; version="0.1.1"; sha256="1dca7592h9yp8lfj866hjzg0d48c84v2kd9l5bsvkw935wwxwg2w"; depends=[crayon dplyr glue httr jsonlite magrittr purrr rlang rlist stringr tibble]; }; - peacesciencer = derive2 { name="peacesciencer"; version="0.6.0"; sha256="00lfavqlxm7zm1bp1kwh1dy5y3016vis3lnwv587xylszr2w9czq"; depends=[bib2df dplyr geosphere magrittr rlang stevemisc stringr tidyr]; }; + peacesciencer = derive2 { name="peacesciencer"; version="0.7.0"; sha256="1z7h22rigw7r8njvwhjg7cn7blayn9vm7wrng1fmzk85j50nj37s"; depends=[bib2df dplyr geosphere lifecycle magrittr rlang stevemisc stringr tidyr]; }; peacots = derive2 { name="peacots"; version="1.3"; sha256="128qpz06b0giz80lp9yq9l6pxcjglfr97yickg7z64vzzl2jilmq"; depends=[]; }; peakPick = derive2 { name="peakPick"; version="0.11"; sha256="1zf7ff9arm4hkdxrfhb0p8p7npd51icy773g2raaqsfys825xwhm"; depends=[matrixStats]; }; peakRAM = derive2 { name="peakRAM"; version="1.0.2"; sha256="0mj7f8jqkfky61xag2km0svbgvfmif3c1d8ccav6pv1963cg3cvv"; depends=[]; }; @@ -13729,7 +13766,7 @@ in with self; { ph2bye = derive2 { name="ph2bye"; version="0.1.4"; sha256="0h5d8d4bagkp6g0nb67cb225ki5p1amnclnfj6afgdcsli5clr67"; depends=[animation nleqslv Rcpp VGAM]; }; ph2mult = derive2 { name="ph2mult"; version="0.1.1"; sha256="0w3w18fkr9xzv6mpb00cz5id33zgsnl6s8zgjpchzvrhmpjpp437"; depends=[clinfun]; }; ph2rand = derive2 { name="ph2rand"; version="0.1.0"; sha256="0k6azygcvzkirjx3vpx6kbhax1yai8r467kmmnvhh3p0v46mc5zp"; depends=[dplyr ggplot2 Rcpp scales tibble tidyr]; }; - phangorn = derive2 { name="phangorn"; version="2.7.1"; sha256="160kks4bg4iwy8g234g6aiiqbvz7ki5k9csyax3kjv7ia5wddafq"; depends=[ape fastmatch igraph magrittr Matrix quadprog Rcpp]; }; + phangorn = derive2 { name="phangorn"; version="2.8.0"; sha256="1pg5lfc5m4ccphswbfbihj91ppmqhf4084kbjlmfsrqxylsyy8ch"; depends=[ape fastmatch igraph Matrix quadprog Rcpp]; }; pharmaRTF = derive2 { name="pharmaRTF"; version="0.1.4"; sha256="1h16r4yhlm6mbwq3k24ssm70bsrg2hvykqh8dayigz5wi2nq5c1f"; depends=[assertthat huxtable purrr stringr]; }; pharmr = derive2 { name="pharmr"; version="0.33.1"; sha256="1a1mlgpw4yyi5px4mpw655b597nqw55nr810rp474f2dz2r18bgv"; depends=[altair reticulate]; }; phase = derive2 { name="phase"; version="1.2.1"; sha256="1gh6xaymw3236d719jg6vl7yrdvnl5i276qhaksbb6axh3nnmgdb"; depends=[behavr circular lubridate plotly pracma signal zeitgebr zoo]; }; @@ -13771,7 +13808,6 @@ in with self; { photobiologySun = derive2 { name="photobiologySun"; version="0.4.1"; sha256="15wp8q29m5c4qplind9098ikxmm1r60lw8cm0pa48lmh33638ia3"; depends=[photobiology]; }; photobiologyWavebands = derive2 { name="photobiologyWavebands"; version="0.4.4"; sha256="04bl72jaxm7vfvzss3wxjqf7p4l6rrqv11a7gqyfg0xqy18clnhx"; depends=[photobiology]; }; photosynthesis = derive2 { name="photosynthesis"; version="2.0.1"; sha256="0drbic4sdx841pzcqvi0gkny7qrnzixlc0wsr6m0llh7pfyl99s6"; depends=[checkmate crayon dplyr furrr future ggplot2 glue gunit magrittr minpack_lm nlme pkgnet purrr rlang stringr tealeaves tidyselect units]; }; - phreeqc = derive2 { name="phreeqc"; version="3.6.3"; sha256="0z20gj1kqhnbvx33sswz5ivj7nk2p4hia4gr2npscs94nc50b5j4"; depends=[]; }; phuassess = derive2 { name="phuassess"; version="1.1"; sha256="0jplj9gih32dllx2hw5aqvc9b94sbrbv66s3a5r8mdbpjh93rhng"; depends=[]; }; phyclust = derive2 { name="phyclust"; version="0.1-30"; sha256="0fy9q95vmlm9idpax7alhpfwn30gflnc9md72g91jypyxkx5nr7p"; depends=[ape]; }; phyext2 = derive2 { name="phyext2"; version="0.0.4"; sha256="0j871kgqm9fll0vdgh071z77ib51y8pxxm0ssjszljvvpx1mb8rb"; depends=[ape phylobase]; }; @@ -13801,7 +13837,7 @@ in with self; { picasso = derive2 { name="picasso"; version="1.3.1"; sha256="1z7zm88wjp7fia7054l7i55f152iddrjj9wbcpcskhc8s6kfg53c"; depends=[MASS Matrix]; }; pid = derive2 { name="pid"; version="0.50"; sha256="05s3xqf95d4avh7gkr49jsm8jzacbv694c3wgppkkc40zip6vkc7"; depends=[DoE_base FrF2 FrF2_catlg128 ggplot2 png]; }; piecemaker = derive2 { name="piecemaker"; version="1.0.0"; sha256="0qm9bbsxfmiycbhappzpm98arlwnbck29c75xjyg03m1dbfykvnk"; depends=[purrr rlang stringi stringr]; }; - piecepackr = derive2 { name="piecepackr"; version="1.8.1"; sha256="1ckcjx36kk5zsfblq663aq31fj0bpkyp0k3fyl7snrxhm4gzjcgi"; depends=[backports gridGeometry grImport2 jpeg png purrr R6 stringr tibble]; }; + piecepackr = derive2 { name="piecepackr"; version="1.9.1"; sha256="1bz2jb45s3baljwdljkqxlcgb3jd6n858sakxzcmdpad89n6d1sn"; depends=[backports gridGeometry grImport2 jpeg png purrr R6 stringr tibble]; }; piecewiseSEM = derive2 { name="piecewiseSEM"; version="2.1.2"; sha256="1qxwc1drx26p4cgymrfjmg5i7ypl7gddv40virkpmc0qaag9pq36"; depends=[car DiagrammeR emmeans igraph lme4 MASS multcomp nlme]; }; piggyback = derive2 { name="piggyback"; version="0.1.1"; sha256="1d448hkk772d21ix1l1cgq2a0spyjnppyrn1myjcv3dcrfxndn83"; depends=[clisymbols crayon fs gh httr jsonlite lubridate memoise]; }; pillar = derive2 { name="pillar"; version="1.6.4"; sha256="17m13rzgwdddwa0n3gpmax6wmfaphbg71l13ffhw5vnxf6i94fh3"; depends=[cli crayon ellipsis fansi lifecycle rlang utf8 vctrs]; }; @@ -13851,7 +13887,7 @@ in with self; { pkglite = derive2 { name="pkglite"; version="0.2.0"; sha256="1qjym8kkbmzdz46xn6a4ir8b07ws30s3m7zdrgh98nf0vrv9bkj8"; depends=[cli magrittr remotes]; }; pkgload = derive2 { name="pkgload"; version="1.2.3"; sha256="0jdkaj5cl0viy0i0hkcm4n2wlg1mfv3camr7f385njfararfanhh"; depends=[cli crayon desc rlang rprojroot rstudioapi withr]; }; pkgmaker = derive2 { name="pkgmaker"; version="0.32.2"; sha256="14ggsd24n5g5rvn0wl4w90ipxzmywqikh28llj89q6kpxwnv4iff"; depends=[assertthat codetools digest registry stringr withr xtable]; }; - pkgndep = derive2 { name="pkgndep"; version="1.0.3"; sha256="15kxzgq1v73rzccj9hng3zj775x27w04j31dcn2bhnnqzi8xviy5"; depends=[callr ComplexHeatmap crayon GetoptLong]; }; + pkgndep = derive2 { name="pkgndep"; version="1.1.0"; sha256="1fd42v91z2ad6h7vcwy9rbg1s886laapz9n2737vdxywc00ylidb"; depends=[BiocManager brew ComplexHeatmap GetoptLong hash]; }; pkgnet = derive2 { name="pkgnet"; version="0.4.1"; sha256="194ynbhq6k7gp8l4ccq6m37qhhf791ynbppjh77cc0q50w2jz387"; depends=[assertthat covr data_table DT futile_logger glue igraph knitr magrittr R6 rlang rmarkdown visNetwork]; }; pkgnews = derive2 { name="pkgnews"; version="0.0.2"; sha256="0kqyy1fchpcyclxh6gly23pkfcf5b3hpsq1bhj4ykzbl4bc002h2"; depends=[]; }; pkgsearch = derive2 { name="pkgsearch"; version="3.0.3"; sha256="1icn8qw6jpcgbmidqpml4ifpv1i5z2i4hp6b0gpb1xk9dlf6mnl2"; depends=[assertthat curl jsonlite parsedate prettyunits tibble]; }; @@ -13878,10 +13914,9 @@ in with self; { pleLMA = derive2 { name="pleLMA"; version="0.2.1"; sha256="1n6q4x8qv00j0hikzzr600xgikhr462zm73zllb9n0valhmzy18z"; depends=[dfidx mlogit]; }; pleio = derive2 { name="pleio"; version="1.6"; sha256="0av1sl0fdn2ia7ddalbvidhcnsvs36iq618s1bknjw29y5yyq020"; depends=[Matrix rms]; }; pleiotest = derive2 { name="pleiotest"; version="1.0.0"; sha256="05mgz42wn1y7q8ffgvak22r3k40q9rv1qvpal8yycp83p7hdzg7v"; depends=[RColorBrewer Rcpp RcppArmadillo]; }; - plfMA = derive2 { name="plfMA"; version="1.0.5"; sha256="13hs06n4b28vlik9bzqdx6j85q05bsd6hb10cr39581a3m33rv5m"; depends=[cairoDevice gWidgets2 gWidgets2RGtk2 limma RGtk2]; }; plfm = derive2 { name="plfm"; version="2.2.2"; sha256="1jgf3jrkdpsf77i4lf68s6sxax95c9is4nryhnzanq9i5f23j24v"; depends=[abind sfsmisc]; }; plgp = derive2 { name="plgp"; version="1.1-7"; sha256="02g6saabrsd8pra0szbwcbilf6w5ywg2gxqb5zdvbxds2vw36hn0"; depends=[mvtnorm tgp]; }; - pliman = derive2 { name="pliman"; version="0.3.0"; sha256="0jvsnxq7px2hi1mw6ci56p7jpm7jj8ic1j95r3mwvksn6ajc8kn3"; depends=[EBImage ggplot2]; }; + pliman = derive2 { name="pliman"; version="1.0.0"; sha256="1mixkw8vfmjfhhfcw7zyfpadzk4imy5b0vlqvjlsmc5r71aakd4w"; depends=[lattice]; }; plink = derive2 { name="plink"; version="1.5-1"; sha256="0rn2i9i8af9aq0xgxhpcdchs2952lq2d2sg8x3js0zi3vcml76k0"; depends=[lattice MASS statmod]; }; plinkFile = derive2 { name="plinkFile"; version="0.1.0"; sha256="0803hp822v9rqh4h437q2nmab19yamc4dbyi6iimm67ykp0d5xss"; depends=[]; }; plinkQC = derive2 { name="plinkQC"; version="0.3.4"; sha256="0l5gf7wf33fhzby0n2qzph02v7an2gj2dji1i129hxsxqnynx7dy"; depends=[cowplot data_table dplyr ggforce ggplot2 ggrepel igraph optparse R_utils sys UpSetR]; }; @@ -13947,7 +13982,7 @@ in with self; { pmhtutorial = derive2 { name="pmhtutorial"; version="1.5"; sha256="1hcw8hwpsivbhz86lnzy08q9n8vahnq8f7rmi4xkmg6b44582cqx"; depends=[mvtnorm Quandl]; }; pmlbr = derive2 { name="pmlbr"; version="0.2.0"; sha256="1f0i52ws8ywkz4c0s3ax3qa3qinqhv1k9qlghkama3b027zkl9zn"; depends=[FNN]; }; pmledecon = derive2 { name="pmledecon"; version="0.1.0"; sha256="0bpfx3lkg7wl7b189gl1m2xz72zna98wiw98yx3hvk6ndv55jy03"; depends=[rmutil splitstackshape]; }; - pmml = derive2 { name="pmml"; version="2.5.0"; sha256="1z2a829q7698rj171gkm624jdjcbs6c71gczd2hcxfi25xspyhw4"; depends=[stringr XML]; }; + pmml = derive2 { name="pmml"; version="2.5.1"; sha256="1spi8xfj6ab7niidlalnpwfd16800xdvambkmizjdh5w9i5hklzk"; depends=[stringr XML]; }; pmmlTransformations = derive2 { name="pmmlTransformations"; version="1.3.3"; sha256="0315kb5x04pidpzr04yaxyynp0mz4ilzp7vkspq4agjkds5hyc88"; depends=[]; }; pmpp = derive2 { name="pmpp"; version="0.1.1"; sha256="1srmkih6zsyf8yf1f045xy1afcz0if6nf1ncslgrq6rgm7330lkw"; depends=[data_table dplyr ggplot2 magrittr MASS Matrix minqa moments plm pracma]; }; pmr = derive2 { name="pmr"; version="1.2.5"; sha256="0dq97dfjmgxlhr3a2n20vyyzfmamcicw878hdxpw31lw02xs6yls"; depends=[]; }; @@ -14073,7 +14108,7 @@ in with self; { powerMediation = derive2 { name="powerMediation"; version="0.3.4"; sha256="08zszskhd21pbjamch5q7v7vx2p78c1d53zrp31hmpxk1ymx2xf3"; depends=[]; }; powerSurvEpi = derive2 { name="powerSurvEpi"; version="0.1.3"; sha256="1p1fw4jq4rxc273hmycxf4bkqm6zmfw0jdy2s65jy10q37r53ial"; depends=[pracma survival]; }; powerbydesign = derive2 { name="powerbydesign"; version="1.0.5"; sha256="006m127rc49bshgljd5d3ii6sfx24ndn2690ixj0vnqm2dp3zjnw"; depends=[gdata ggplot2 lme4 MASS plyr reshape2 stringr]; }; - powerly = derive2 { name="powerly"; version="1.5.2"; sha256="0agmycl9nqd4f3fl77bk49gd8lcfwp5gaidzrylpsrffmm5g3bgg"; depends=[bootnet ggplot2 osqp patchwork progress qgraph quadprog R6 splines2]; }; + powerly = derive2 { name="powerly"; version="1.7.1"; sha256="0bfnsj0620y2snm7z18z3ssiflnmzy3gdfni1hzvqqsfdjhhygir"; depends=[bootnet ggplot2 osqp patchwork progress qgraph quadprog R6 rlang splines2]; }; powerpkg = derive2 { name="powerpkg"; version="1.5"; sha256="0mbk2fda2fvyp1h5lk5b1fg398xybbjv0z6kdx7w7xj345misf7l"; depends=[]; }; powerplus = derive2 { name="powerplus"; version="3.1"; sha256="0ayp6x34hkzgris4j3zbbs0r23n81bhww3wgfyy630ri4sk6brrn"; depends=[complexplus expm MASS Matrix phonTools]; }; ppcSpatial = derive2 { name="ppcSpatial"; version="0.2.0"; sha256="1gi57zngc42wcrihg29nn7qa3gaq105ckp76qmczkldshlpd7x4r"; depends=[dplyr ggplot2 htmltools htmlwidgets leaflet magrittr PakPC2017 rgdal scales shiny tidyr tmap]; }; @@ -14100,7 +14135,7 @@ in with self; { prais = derive2 { name="prais"; version="1.1.2"; sha256="16h3771lr6vn0g92bfpdq7r3wpdkspbhmrl5948p4isc5qxy2cgx"; depends=[lmtest pcse sandwich]; }; praise = derive2 { name="praise"; version="1.0.0"; sha256="1gfyypnvmih97p2r0php9qa39grzqpsdbq5g0fdsbpq5zms5w0sw"; depends=[]; }; praktikum = derive2 { name="praktikum"; version="0.1"; sha256="0kkydgglvqw371fxh46fi86fmdndhwq1n8qj0ynbh2gz1cn86aw1"; depends=[]; }; - praznik = derive2 { name="praznik"; version="9.0.0"; sha256="0k8dk2jbinr3n8hgfsxkyv8739y9y3v4kcxwrq9dxzpiasx3p5r6"; depends=[]; }; + praznik = derive2 { name="praznik"; version="10.0.0"; sha256="199g6wgda6m8ym9kg3qbx42c21bigg9bxkga950k2hdm3f1xa62g"; depends=[]; }; prcbench = derive2 { name="prcbench"; version="1.0.1"; sha256="1n7f9qn0vz86ir4byvni4fi5x2xa8sdzpb54hwc0b34xy2wjm204"; depends=[assertthat ggplot2 gridExtra memoise precrec PRROC R6 rJava ROCR]; }; prclust = derive2 { name="prclust"; version="1.3"; sha256="0p0sf8248aigs99py8mpzz743jnrf7n1nv5shag15arxz9yx7zn3"; depends=[Rcpp]; }; prcr = derive2 { name="prcr"; version="0.2.1"; sha256="0k5vl14akqf8qvak6h7a19qxn4wzpyxq7lyvdhxfh8l4gs4ca2l6"; depends=[class dplyr forcats ggplot2 irr lpSolve magrittr purrr tibble tidyr]; }; @@ -14256,7 +14291,7 @@ in with self; { provTraceR = derive2 { name="provTraceR"; version="1.0"; sha256="19iillyh5zw64mmr6ik4ci1n2p651xqzxa4iq5bwa70imbzyy5ip"; depends=[provParseR]; }; provViz = derive2 { name="provViz"; version="1.0.7"; sha256="0bjq8mywgm2jr0m0458wk6n5al7jr1psvh4g31z4qzlrrkfqgzzg"; depends=[]; }; provenance = derive2 { name="provenance"; version="3.3"; sha256="0kdpv1gjvgv9nxfsarm1z042xas9d4n2smhrqccs450a2mhb5fxr"; depends=[IsoplotR MASS]; }; - proxirr = derive2 { name="proxirr"; version="0.1"; sha256="1lb32fdfswdrczylhfz5f0aawg7rkxzzsav37m551makn6a26k49"; depends=[]; }; + proxirr = derive2 { name="proxirr"; version="0.2"; sha256="0ffnzmd9zy43vzp0mc0ncjwfj5d7p2gzwk8gcwhk1f9yvgiw4wc1"; depends=[]; }; proxy = derive2 { name="proxy"; version="0.4-26"; sha256="0k8sr24mjfvxp12sf1j9228ah3ngy15nqmm0jw14x5s32f1assv7"; depends=[]; }; proxyC = derive2 { name="proxyC"; version="0.2.2"; sha256="107z7di0xkil58pf051abp8v729rg4gk47bp9a1h5z1xwp132fnh"; depends=[Matrix Rcpp RcppArmadillo RcppParallel]; }; prozor = derive2 { name="prozor"; version="0.2.11"; sha256="1a2k69fvgi6vxgczk81kh8r2jxc6nirc51w6ac239rqjzb1zyhjm"; depends=[AhoCorasickTrie doParallel dplyr foreach Matrix plyr readr seqinr stringr]; }; @@ -14457,6 +14492,7 @@ in with self; { qtlhot = derive2 { name="qtlhot"; version="1.0.4"; sha256="0gf0fsq91g830vqg5kz01zznm40qpjncy964ccvmms3i6d3hxd9m"; depends=[corpcor mnormt qtl]; }; qtlmt = derive2 { name="qtlmt"; version="0.1-6"; sha256="023h60z8d05832l2g7mg776hfjb0i7xpvhz3i899rc3h5pgjd94c"; depends=[]; }; qtlnet = derive2 { name="qtlnet"; version="1.5.4"; sha256="0jdf3hyzas0lyv2v4gqai9mhh7218a1mvm0nlwv9hfdbij0hi84v"; depends=[graph igraph pcalg qtl sem]; }; + qtlpoly = derive2 { name="qtlpoly"; version="0.2.2"; sha256="0a7nlc22yndp9xbq5lyabzahgym6vayi46z1a75wwgjdjizji1r0"; depends=[abind CompQuadForm ggplot2 gtools MASS Matrix mvtnorm nlme quadprog Rcpp RcppArmadillo RcppProgress RLRsim]; }; quRan = derive2 { name="quRan"; version="0.1.0"; sha256="108d797l9ggggc5b61pl7f6avzknmnnib2ys5vrg385zfbx9srvw"; depends=[]; }; quad = derive2 { name="quad"; version="1.0"; sha256="0fak12l19f260k0ygh6zimx8dabzsv7a9i2njw8hnfcs3ndffhv5"; depends=[PearsonDS]; }; quadmatrix = derive2 { name="quadmatrix"; version="0.1.0"; sha256="0nngrvvbalmrr6g9bq9f5qrllvwfq5p1b9yhs4zb098s3wga8jms"; depends=[geigen matrixcalc]; }; @@ -14489,7 +14525,7 @@ in with self; { quantreg = derive2 { name="quantreg"; version="5.86"; sha256="01fnp6ndh7npxj76xlynndacsgmcfr9kgh2waw0clx3mmwlwilbi"; depends=[conquer Matrix MatrixModels SparseM]; }; quantreg_nonpar = derive2 { name="quantreg.nonpar"; version="1.0"; sha256="1f9120awnkwsgdiqg98lg7xs5l4y80930869x6k9q76595r5m92k"; depends=[fda mnormt quantreg Rearrangement]; }; quantregForest = derive2 { name="quantregForest"; version="1.3-7"; sha256="0lk7r02i6zpx9sdl2rp0r7fc3a84s8qhg49nh2x7k3vxwa095pjz"; depends=[randomForest RColorBrewer]; }; - quantregGrowth = derive2 { name="quantregGrowth"; version="1.3-1"; sha256="00avyjpbwh3y3pmncppkwl4545s2m1x77nllpih7sry4wds7rkj7"; depends=[quantreg]; }; + quantregGrowth = derive2 { name="quantregGrowth"; version="1.4-0"; sha256="0fw8kdgnlvb9c0xnankmzlpk9qnk52rqrrby32a02mz2f93ddh7k"; depends=[quantreg]; }; quantregRanger = derive2 { name="quantregRanger"; version="1.0"; sha256="1a9q2prr790bpw6s0y5ni5ppd3vqkjr0v4nqp6ywcj5n3sk69pvx"; depends=[ranger Rcpp]; }; quantspec = derive2 { name="quantspec"; version="1.2-3"; sha256="0ifwq2jmvxhpijz9yd9hffkff6ixcliaqkp9ispp9k1b8icwi8zn"; depends=[abind quantreg Rcpp snowfall zoo]; }; quarks = derive2 { name="quarks"; version="1.0.9"; sha256="02yjmbv0lm940g74d4q6xhmv158ghis9n9s84g09j3q8wzkgmsld"; depends=[rugarch]; }; @@ -14642,13 +14678,13 @@ in with self; { rabi = derive2 { name="rabi"; version="1.0.2"; sha256="0jndx1gvsnsv1xrx3ismgvjp7d4kj3436zcawvw32c5klvxx0y4j"; depends=[numbers polynom shiny stringdist]; }; raceland = derive2 { name="raceland"; version="1.1.1"; sha256="1sb56id7h1nm34a7kf6abfxwh4kmnnzc51x23cijq6fd3jm4ggnr"; depends=[comat fasterize plotwidgets raster Rcpp RcppArmadillo rgdal sf]; }; racir = derive2 { name="racir"; version="2.0.0"; sha256="0qpjnaifx4z1jvyrc8p5jny0ci20w2ri1rs68sv9b93nkaiixnps"; depends=[]; }; - ractivecampaign = derive2 { name="ractivecampaign"; version="0.1.1"; sha256="1lnjz7fkvp119ka5mry2k0pj8bs8g35mpp298wcr2p87l6r2imm1"; depends=[cli dplyr httr pbapply stringr tidyr]; }; + ractivecampaign = derive2 { name="ractivecampaign"; version="0.2.0"; sha256="1l7266qryba2zijgs7xj4p073l69q0iin6qgsbnn7dafmggv5mlr"; depends=[cli dplyr httr pbapply retry stringr tidyr]; }; radar = derive2 { name="radar"; version="1.0.0"; sha256="1wh5j3cfbj01jx2kbm9ca5cqhbb0vw7ifjn426bllm4lbbd8l273"; depends=[]; }; radarBoxplot = derive2 { name="radarBoxplot"; version="1.0.5"; sha256="1lmgh8j3c6jiiwpdz9l5zd07xcv87laxnj789bpqnmxa0szsfngl"; depends=[]; }; radarchart = derive2 { name="radarchart"; version="0.3.1"; sha256="0gcxnbgj8ja1m4wzhbjy67m6zphf0c5ni9yx7sr7f0abm03ry753"; depends=[htmltools htmlwidgets]; }; radiant = derive2 { name="radiant"; version="1.4.0"; sha256="1ippx0gzizrb00m8apmzfw5ahgnfsrja94dxd3gylai7c969f1d5"; depends=[r_import radiant_basics radiant_data radiant_design radiant_model radiant_multivariate shiny]; }; radiant_basics = derive2 { name="radiant.basics"; version="1.4.0"; sha256="0ah3spq56w42lla38d9p0d3lkgvbvlvbpj6g9l3vjqafzp30sqzp"; depends=[dplyr ggplot2 lubridate magrittr patchwork polycor psych r_import radiant_data scales shiny tidyr]; }; - radiant_data = derive2 { name="radiant.data"; version="1.3.12"; sha256="08bqqrfvpgyf613ikihwfnzb23l23f5nfs7zynnxbjxc1zfhbpny"; depends=[base64enc broom car curl dplyr DT ggplot2 glue jsonlite knitr lubridate magrittr markdown MASS patchwork plotly psych r_import randomizr readr readxl rlang rmarkdown rstudioapi scales shiny shinyAce shinyFiles stringi tibble tidyr writexl]; }; + radiant_data = derive2 { name="radiant.data"; version="1.4.1"; sha256="12x4nz5n6yz1a67ji79pwvznp9flmn50hpp9y9sfhixir7dvwy27"; depends=[base64enc broom car curl dplyr DT ggplot2 glue jsonlite knitr lubridate magrittr markdown MASS patchwork plotly psych r_import randomizr readr readxl rlang rmarkdown rstudioapi scales shiny shinyAce shinyFiles stringi tibble tidyr writexl]; }; radiant_design = derive2 { name="radiant.design"; version="1.3.5"; sha256="1514s21jybyvpi2sx06xsxfrzgg07x7xxhwsazc61v3w1mllj2xw"; depends=[AlgDesign dplyr magrittr mvtnorm polycor pwr r_import radiant_data randomizr shiny]; }; radiant_model = derive2 { name="radiant.model"; version="1.4.1"; sha256="0slll2lc24sy8ga69h8mhffp1idp36jclf8v83y58q9fz7ps1y8k"; depends=[broom car data_tree DiagrammeR dplyr e1071 ggplot2 ggrepel lubridate magrittr NeuralNetTools nnet patchwork pdp psych r_import radiant_basics radiant_data ranger rlang rpart sandwich shiny stringr tidyr xgboost yaml]; }; radiant_multivariate = derive2 { name="radiant.multivariate"; version="1.3.5"; sha256="1khgy3zj0q155dyky1bd2wfdj6r8jgw8aa6a2nj0rbnwa5zam913"; depends=[car clustMixType dplyr ggplot2 ggrepel gower GPArotation lubridate magrittr MASS patchwork polycor psych r_import radiant_data radiant_model rlang scales shiny]; }; @@ -14688,7 +14724,7 @@ in with self; { random_polychor_pa = derive2 { name="random.polychor.pa"; version="1.1.4-4"; sha256="19yzpjidw5pbrqfa5ln5hgghv0mq3cwl92z2isq25yydfl6qsl6h"; depends=[boot MASS mvtnorm nFactors psych sfsmisc]; }; randomForest = derive2 { name="randomForest"; version="4.6-14"; sha256="0kbmm0l42fc2d1rdq0l7k09d34kd87q4lx651ffsic4y84h8kf7l"; depends=[]; }; randomForestExplainer = derive2 { name="randomForestExplainer"; version="0.10.1"; sha256="1ny8c3vn2zvdx12avwvlm4lp648jigkrkcvnhf5qmj8rh0w069v0"; depends=[data_table dplyr DT GGally ggplot2 ggrepel randomForest ranger reshape2 rmarkdown]; }; - randomForestSRC = derive2 { name="randomForestSRC"; version="2.13.0"; sha256="1gcafbagia1ccc9lkh8sbx6v8gi9ydxhlzx65hm27ix8wg583fdy"; depends=[data_tree DiagrammeR]; }; + randomForestSRC = derive2 { name="randomForestSRC"; version="2.14.0"; sha256="0fvfv1ah9n6hzdfr2xxpyhswp7js4m941858glrn1ap2zp71va8k"; depends=[data_tree DiagrammeR]; }; randomLCA = derive2 { name="randomLCA"; version="1.1-1"; sha256="08flank5pmyh5ih63bfw5qaby3g8vfh8p36sjbmxfylicdydfjl7"; depends=[boot doParallel doRNG fastGHQuad foreach lattice Matrix Rfast]; }; randomNames = derive2 { name="randomNames"; version="1.5-0.0"; sha256="1lv1vqb4wgs0j1gqy84dpa30qsvbp6928zpshczpw87yf32k71vh"; depends=[crayon data_table toOrdinal]; }; randomUniformForest = derive2 { name="randomUniformForest"; version="1.1.5"; sha256="1amr3m7h5xcb8gahrr58233chsnx1naf9x5vpjy9p5ivh71xcxf7"; depends=[cluster doParallel foreach ggplot2 gtools iterators MASS pROC Rcpp]; }; @@ -14727,7 +14763,7 @@ in with self; { rareGE = derive2 { name="rareGE"; version="0.1"; sha256="0v3a2wns77q923ilddicqzg0108f8kmfdnsff1n65icin7cfzsny"; depends=[MASS nlme survey]; }; rareNMtests = derive2 { name="rareNMtests"; version="1.1"; sha256="13r2hipqsf8z9k48ha5bh53n3plw1whb7crpy8zqqkcac8444b2z"; depends=[vegan]; }; rarms = derive2 { name="rarms"; version="1.0.0"; sha256="11wjxd3pxvjv1j2nz26l8f0kykk9w6lf08izhivfngp63dk2akns"; depends=[jsonlite]; }; - rasciidoc = derive2 { name="rasciidoc"; version="3.2.0"; sha256="1bs0rnqprgzlx5n41l72q27cgrxs88q28cgzjpia5yyawjvniqls"; depends=[checkmate document fritools gert highr knitr reticulate]; }; + rasciidoc = derive2 { name="rasciidoc"; version="4.0.2"; sha256="1k3bh1bbjrzhmz2dz98qw8ad46jk7dx7srigp22valk5jz4ni7s5"; depends=[checkmate document fritools gert highr knitr reticulate]; }; rasclass = derive2 { name="rasclass"; version="0.2.2"; sha256="1lsmv8kh519mz3szb4k9s17fz1480cw0i4qk12givhhm2rpzjy50"; depends=[car e1071 nnet randomForest RSNNS]; }; rassta = derive2 { name="rassta"; version="1.0.1"; sha256="03abcgg5310avlwmphr6inw1dnyj2g9rp1jzry9wfi3yshpf15b4"; depends=[cluster data_table dplyr DT foreach GGally ggplot2 histogram KernSmooth kohonen plotly raster rlang scales shiny stringdist stringi terra]; }; raster = derive2 { name="raster"; version="3.5-2"; sha256="0wixw1ixnmcmkwczpj8m90c76727zira2rl4ighashggydkm2mlr"; depends=[Rcpp sp terra]; }; @@ -14770,7 +14806,7 @@ in with self; { rbenvo = derive2 { name="rbenvo"; version="1.0.5"; sha256="0clg2cxyi60yz2mdp95v0hd5gqhk8h2xgmx68852jcpbjf76xasa"; depends=[dplyr forcats ggplot2 lme4 lubridate magrittr Matrix purrr rlang sf stringr tidyr]; }; rbgm = derive2 { name="rbgm"; version="0.1.0"; sha256="0jw7p6l0il0fz5rq7ra731xzj06aqqvm9s1r0hwa4rd74lkg198n"; depends=[dplyr geosphere raster reproj rlang sfheaders sp]; }; rbhl = derive2 { name="rbhl"; version="0.9.2"; sha256="0rs1mmah4yyy5dgz1lvzslm4dk53x0wpiy3742z3hwr8p4agnkqi"; depends=[crul jsonlite plyr tibble xml2]; }; - rbi = derive2 { name="rbi"; version="0.10.3"; sha256="09hqv235fry60nqvd1is8n7szkq96w160xpw2pdxqdxvlh52cf2r"; depends=[data_table ncdf4 processx reshape2]; }; + rbi = derive2 { name="rbi"; version="0.10.4"; sha256="0p0cvdzhb81drk5b9fb9jcnw5c02i7qfy7vwyyhk2b1vm9rkw681"; depends=[data_table ncdf4 processx reshape2]; }; rbi_helpers = derive2 { name="rbi.helpers"; version="0.3.2"; sha256="1inbf3kpl4y46m7v36akrr24112y4sd3d8yqia16i32wxf53wql5"; depends=[data_table lubridate Matrix rbi reshape2]; }; rbibutils = derive2 { name="rbibutils"; version="2.2.4"; sha256="15yyihk0dgz3yyqz28r5nc6m99zcywpabnabf18phbs7rb87p7mv"; depends=[]; }; rbin = derive2 { name="rbin"; version="0.2.0"; sha256="18g6s4m0yc1bzrymk8km553kcwi4vj16b6mxw2lmv48z7243iq87"; depends=[data_table ggplot2]; }; @@ -14799,7 +14835,7 @@ in with self; { rcartocolor = derive2 { name="rcartocolor"; version="2.0.0"; sha256="08ljaag2mnhz2671zvwji1sp003z94lz30vjidmybm9fp8piqw5g"; depends=[ggplot2 scales]; }; rcbalance = derive2 { name="rcbalance"; version="1.8.5"; sha256="15qlk3cqwsvixl17l1fxcajrabmz4y7q5gz0a1pd66f6i1xskcqq"; depends=[MASS plyr]; }; rcbayes = derive2 { name="rcbayes"; version="0.1.0"; sha256="00pr7fh33nsl84m5p32a010pyw2cgyjlqsjrlz3hlwwggwlfw1rw"; depends=[BH dplyr magrittr Rcpp RcppEigen RcppParallel Rdpack rlang rstan rstantools shiny shinythemes StanHeaders tibble tidybayes]; }; - rcbsubset = derive2 { name="rcbsubset"; version="1.1.4"; sha256="0sfsmnxs4c8blzg0bb2ffb2xcsjv7pp39arnda988f7b2aas59wj"; depends=[MASS plyr]; }; + rcbsubset = derive2 { name="rcbsubset"; version="1.1.5"; sha256="0qfx8qzsrlgbgpymc67ywy9k8dgfjz5x54xwabf2bjjwrzv2mcl5"; depends=[MASS plyr rcbalance]; }; rcc = derive2 { name="rcc"; version="1.0.0"; sha256="0a77d54c9qahhsjzpa0436ddsj4j44013r7rbxm0fjz04c0d2921"; depends=[]; }; rccdates = derive2 { name="rccdates"; version="1.0.0"; sha256="1f87qlw62am2qy1zzrz91vmsn8axhld44gak61xa7046675hm98s"; depends=[rccmisc]; }; rccmisc = derive2 { name="rccmisc"; version="0.3.7"; sha256="171s2ll759xjdnx0z24ih5ix2vcp4qnmf1nf107gij6wv8k450ab"; depends=[dplyr]; }; @@ -14850,7 +14886,7 @@ in with self; { rdoc = derive2 { name="rdoc"; version="0.1.0"; sha256="0ac6413jyrr7m25z30n3bpiafsvjx38ik6rrjzsiqxrfp41j6l9x"; depends=[cli crayon prettycode R6]; }; rdomains = derive2 { name="rdomains"; version="0.2.0"; sha256="048wdddgg2zaarpmn07dya74xy10831lba1zpq9kjnqk8v286jrw"; depends=[aws_alexa curl devtools glmnet httr jsonlite Matrix rlang urltools virustotal XML xml2]; }; rdoxygen = derive2 { name="rdoxygen"; version="1.0.0"; sha256="16907969w66xvy62k45rw10qfv4x8z6jkkc6i97vppkgnlvf4d4b"; depends=[devtools]; }; - rdpower = derive2 { name="rdpower"; version="2.0"; sha256="1yw563nz7dc24ba7vh0w85gp3rhr2ddx3qkpfdr1iwq8a8g1hg01"; depends=[rdrobust]; }; + rdpower = derive2 { name="rdpower"; version="2.1"; sha256="1aylzslfjcm84y2nbnlam8pvg1fjgznihhngjvz771rn5klgkznc"; depends=[rdrobust]; }; rdrobust = derive2 { name="rdrobust"; version="1.0.7"; sha256="0j7qalrbc1jxnzwjwm2hyakfjxai97kzw4aprzygdx9f838al9pf"; depends=[ggplot2 MASS]; }; rdrop2 = derive2 { name="rdrop2"; version="0.8.2.1"; sha256="02rhcq1vn349ddjkqamxb0wjb3z3m4wzkvin1mprcz4fzrjxgbdr"; depends=[assertive digest dplyr httr jsonlite magrittr purrr]; }; rdryad = derive2 { name="rdryad"; version="1.0.0"; sha256="00f1qwsbwg5jggm5b83nhk1lxyw272rv2kg77bcwqvlf3074c3mz"; depends=[crul curl hoardr jsonlite mime tibble zip]; }; @@ -14882,7 +14918,7 @@ in with self; { readmnist = derive2 { name="readmnist"; version="1.0.6"; sha256="0f2kp5r04k47gpvbj8x13c47zsis3bw3y8f5f37sh6jggblqr004"; depends=[]; }; readmoRe = derive2 { name="readmoRe"; version="0.2-12"; sha256="18zxhnh8nzh3l5j94mrqf9l94bxvc82nzhl8sx5k9h08gj4f1zfw"; depends=[plyr R_utils readxl xml2]; }; readobj = derive2 { name="readobj"; version="0.4.1"; sha256="0ga0kk6n98zy8w9wc2fahn15bgsv73n4ncqgqb5ldyr4vjqxr2sr"; depends=[Rcpp]; }; - readr = derive2 { name="readr"; version="2.0.2"; sha256="05bnvcc55i0xjilfrqx3700mwiz8sgihq1wxlbvvr8nxa7bmxc4q"; depends=[cli clipr cpp11 crayon hms lifecycle R6 rlang tibble tzdb vroom]; }; + readr = derive2 { name="readr"; version="2.1.0"; sha256="03d7y4k9w5vcm7fwlcaw715ff7d953i92jwbp7ynrqcr09kw6zm0"; depends=[cli clipr cpp11 crayon hms lifecycle R6 rlang tibble tzdb vroom]; }; readrba = derive2 { name="readrba"; version="0.1.2"; sha256="1gbyin3lvh4vjwr715xbdjnlzz42f9fs44x1hqmyinya55l9whih"; depends=[dplyr httr lubridate purrr readxl rlang rvest stringr tidyr xml2]; }; readroper = derive2 { name="readroper"; version="0.9.3"; sha256="00l731hryx0igj0x7knljs9xq4gaczmsgw2hh05ngrl9y5s528dc"; depends=[readr]; }; readsdmx = derive2 { name="readsdmx"; version="0.3.0"; sha256="188yzkjblbjly032312w0fazj7k7j4ynqfc69xpblnw4gs708sx0"; depends=[Rcpp]; }; @@ -14937,6 +14973,7 @@ in with self; { redoc = derive2 { name="redoc"; version="2.0.0.49"; sha256="06nfqw6xs0ij21mjbqk9sdvhhh0pqf6fwankvagsbyrv742g7qkx"; depends=[jsonlite]; }; redux = derive2 { name="redux"; version="1.1.0"; sha256="0a551w7fph338mqzxda6y21lsad19dway7w18jw9cv1rgvcp9nvc"; depends=[R6 storr]; }; ref_ICAR = derive2 { name="ref.ICAR"; version="1.0"; sha256="0k6czsbjclgmi7vp5hl50jghkzm573s50993iz3dcv55mv662251"; depends=[coda MCMCglmm mvtnorm Rdpack rgdal spdep]; }; + refer = derive2 { name="refer"; version="0.1.0"; sha256="1y0n4xzhn96d25mwjr0735w990rz2kbxhcpsc5k5vwbwq64q6wsd"; depends=[eList matchr]; }; referenceIntervals = derive2 { name="referenceIntervals"; version="1.2.0"; sha256="0wf8c71z7gq2f91q60dyy7mrxsnhq7x3wdllmzn2lpabgv2wrm85"; depends=[boot car extremevalues outliers]; }; refineR = derive2 { name="refineR"; version="1.0.0"; sha256="13bxi1fp0517lvwdwdjc8vm7sr38kwjk6d17qra0is1mlac4wyj3"; depends=[ash future future_apply]; }; refinr = derive2 { name="refinr"; version="0.3.1"; sha256="0q76sr050pg3ahwzcxj08mjig0k2jq8yh7nv6d914pwg3dhq05sn"; depends=[Rcpp stringdist stringi]; }; @@ -14952,7 +14989,7 @@ in with self; { regexPipes = derive2 { name="regexPipes"; version="0.0.1"; sha256="1hk0rhvmgzcyf5cyl8hjznl3ll25kpasqikfr6nxd6ian2slvmmb"; depends=[]; }; regexSelect = derive2 { name="regexSelect"; version="1.0.0"; sha256="0xnb9qa8l63ang4r40ky4qhlrs5mbzvmj98dgij26j3mq1ys1pa7"; depends=[shiny shinyjs]; }; regexTestR = derive2 { name="regexTestR"; version="0.1.0"; sha256="1nfzzifqvhz3cjdr93pd4iyz5hb8v42v94r89b2ikc8ycc48k75g"; depends=[config data_table DT golem htmltools pkgload processx purrr RColorBrewer rvest shiny shinyBS shinythemes stringr tidyr xml2]; }; - reghelper = derive2 { name="reghelper"; version="1.0.2"; sha256="1ya15ksn30ad6lx10xr9vhncvm72j5qz82hwg6avdm8h6xi16bqp"; depends=[ggplot2 lme4 nlme]; }; + reghelper = derive2 { name="reghelper"; version="1.1.0"; sha256="16mj3v9rn9krx4a8xnb2l01wnk17hgn0pkmkvqh4baby9a479hv7"; depends=[ggplot2 lme4 MASS nlme]; }; regioncode = derive2 { name="regioncode"; version="0.1.1"; sha256="1h5qbpcfgl86g0cy5nz9vvwzqsp335lqhl4djil3k3mab38k778d"; depends=[dplyr knitr pinyin textshaping]; }; regions = derive2 { name="regions"; version="0.1.8"; sha256="16i0w1my9zfwh0p9qvc3vcid0r6rb6gbvvrx03vbg81l6cxrglr4"; depends=[assertthat countrycode dplyr glue here magrittr purrr readxl rlang stringr tibble tidyr tidyselect]; }; registr = derive2 { name="registr"; version="1.0.0"; sha256="1ysj2ab69w6g71d1kpcwyq0py71w6h7lfhk4nzgn2dhh6k8whwbn"; depends=[dplyr ggplot2 gridExtra magrittr Rcpp RcppArmadillo tidyr]; }; @@ -15025,7 +15062,7 @@ in with self; { report = derive2 { name="report"; version="0.4.0"; sha256="1g6xq6gl84ddz03pfnihc501svghdjxsa0f6fmlb3r58h61r8isq"; depends=[bayestestR datawizard effectsize insight parameters performance]; }; reportROC = derive2 { name="reportROC"; version="3.5"; sha256="1f3vdxz45bhks1pm3b41pmh8g8vr2czfr1pn4ddy4kgw5h1x3n8n"; depends=[pROC]; }; reportReg = derive2 { name="reportReg"; version="0.3.0"; sha256="0qwrpn61x69hmgln5fpc58dqfa3pba0lgjjyj0f3fh96wc9jyhq1"; depends=[nlme]; }; - reporter = derive2 { name="reporter"; version="1.2.0"; sha256="02p49xm0hcdx9lz6f57jn3j49dp2cipdc1rl05baypfrhwnz2ix9"; depends=[crayon fmtr jpeg stringi]; }; + reporter = derive2 { name="reporter"; version="1.2.6"; sha256="1xa53xahi0ag202abigg51s5pllabll53zwx1b16yxh382c42ad6"; depends=[crayon fmtr jpeg stringi]; }; reportfactory = derive2 { name="reportfactory"; version="0.4.0"; sha256="0mkk9gyd3l6m33mkc6w3fmgrzc6na03kwxxwgn0zb83bjpmyyl1z"; depends=[callr fs knitr rmarkdown rprojroot rstudioapi yaml]; }; reportr = derive2 { name="reportr"; version="1.3.0"; sha256="0zynplxqvbmf23cm2rsz3wz2jx6mv55z94mn1k44ny3lx625cnpw"; depends=[ore]; }; reporttools = derive2 { name="reporttools"; version="1.1.3"; sha256="0sx89qb66lczmzcsybxac4razcncf2xcxr0vfkvb3f8jqc7xwcik"; depends=[xtable]; }; @@ -15067,7 +15104,8 @@ in with self; { reticulate = derive2 { name="reticulate"; version="1.22"; sha256="0v7m2pv94lfqiw8rhz3c9g66vvz4qvih4vd29rhfk2phmcwpnvmh"; depends=[here jsonlite Matrix png rappdirs Rcpp withr]; }; retistruct = derive2 { name="retistruct"; version="0.6.3"; sha256="1zij37n2ja3yx6n1agdkb3lj42p01parcg6djv60bng9c2qq0wsl"; depends=[foreign geometry png R_matlab R6 rgl RImageJROI RTriangle sp ttutils]; }; retractcheck = derive2 { name="retractcheck"; version="1.0.0"; sha256="1c4p8afh9g359s560sswcys3manc0lqvk0aqgvd09p4rpzls2dm7"; depends=[httr plyr textreadr]; }; - retriever = derive2 { name="retriever"; version="0.2.0"; sha256="0bvfpcm1j6k1rlag42d4xg87nks50n51cjx8rklbl5s7m0y8a29i"; depends=[pbapply preprocessCore]; }; + retriever = derive2 { name="retriever"; version="0.2.1"; sha256="0vachj8rzh8g55y18hz85bsrzr86614frdmr7wz6hszgiq8qgcxy"; depends=[pbapply preprocessCore]; }; + retrocombinator = derive2 { name="retrocombinator"; version="1.0.0"; sha256="0ci5cm9ml2gsn0n0scaahpfi8kyn6i0s3fb4mn7m9s83c0ls6xgv"; depends=[dplyr ggplot2 magrittr Rcpp rlang]; }; retrodesign = derive2 { name="retrodesign"; version="0.1.0"; sha256="173jrpzasimplv8vbm8gzpl8aibnsjkgvhz1hd75is0b2l8gnbxy"; depends=[]; }; retroharmonize = derive2 { name="retroharmonize"; version="0.2.0"; sha256="10fwmm91p3dgad99a7imkg9cjlk0gy2bkpmzgfr6s9bp07splj6i"; depends=[assertthat dplyr fs glue haven here labelled magrittr pillar purrr rlang snakecase stringr tibble tidyr tidyselect vctrs]; }; retrosheet = derive2 { name="retrosheet"; version="1.1.4"; sha256="13vicafx3z83wrxhc6d7bk6bd0m49qcd5li2b4j0bgzavrx6clxs"; depends=[httr rvest stringi stringr xml2]; }; @@ -15099,7 +15137,7 @@ in with self; { rfigshare = derive2 { name="rfigshare"; version="0.3.7"; sha256="1qgzn0mpjy4czy0pnbi395fxxx84arkg8r7rk8aidmd34584gjiq"; depends=[ggplot2 httpuv httr plyr RJSONIO XML yaml]; }; rfinance = derive2 { name="rfinance"; version="0.1.0"; sha256="0xy4jw50vqbvicpwc3drzgg8ywgpdyxda7bqym52c76vsghcmq2d"; depends=[cli curl data_table dplyr glue httr janitor lubridate magrittr PerformanceAnalytics readr rvest stringr tibble TTR xml2 xts]; }; rfinterval = derive2 { name="rfinterval"; version="1.0.0"; sha256="1z7v0sbql6g2h3fr1268nj79rbx1d33hjfaraxhbikrjgb8mbp0w"; depends=[MASS ranger]; }; - rfishbase = derive2 { name="rfishbase"; version="3.1.9"; sha256="0mviki09ydgbnd5mgbikvijxjfg7jrf836campnlz0b9xvk32kb8"; depends=[arkdb curl DBI dbplyr dplyr gh magrittr memoise progress purrr readr rlang RSQLite stringr]; }; + rfishbase = derive2 { name="rfishbase"; version="3.1.10"; sha256="01nwgn73mfs6cdbqkchsi4lnfv73svawdf4mw3mcld83y6li0zcw"; depends=[arkdb curl DBI dbplyr dplyr gh magrittr memoise openssl progress purrr readr rlang RSQLite stringr]; }; rfishdraw = derive2 { name="rfishdraw"; version="0.1.0"; sha256="0204s8jy6shr694hacrq4j0lia9l59rk8kc75sdw87c09q7kjld2"; depends=[ggplot2 jsonlite]; }; rfisheries = derive2 { name="rfisheries"; version="0.2"; sha256="16j3hn1py8khqadmh81qsg76c62wzqkaq3fn39z0z5mgynmcm62j"; depends=[assertthat data_table ggplot2 httr rjson]; }; rfishnet2 = derive2 { name="rfishnet2"; version="0.2.0"; sha256="0g90h4353kp7szv3971kb4l5x3x08qx4f9ln85n5g3b3zdg77dkz"; depends=[dplyr ggplot2 pracma rworldmap sf]; }; @@ -15123,7 +15161,6 @@ in with self; { rgeoprofile = derive2 { name="rgeoprofile"; version="0.2.2"; sha256="1nk3qzwcvvq3n1da480zk047wl738fjyvarakm00wwrbnb3ax70j"; depends=[geosphere leaflet pals RANN raster sp spatstat_geom splancs]; }; rgeos = derive2 { name="rgeos"; version="0.5-8"; sha256="05539shf38slvq38pf92h9q57vmzn2vfqbirl3pbbvvc2j957cqd"; depends=[sp]; }; rgexf = derive2 { name="rgexf"; version="0.16.2"; sha256="00c2zka1n3k7p1l0mlchr063s6x58p9r3fb64d4wgl4rvsq55q3f"; depends=[igraph servr XML]; }; - rgho = derive2 { name="rgho"; version="2.0.1"; sha256="1byvq2swn2j9v0zy5smjklv7bkncrclhli62cf1f2wiah5qg8sv2"; depends=[curl dplyr httr jsonlite lazyeval magrittr memoise readr rlang tibble tidyr]; }; rgl = derive2 { name="rgl"; version="0.107.14"; sha256="1z5h4wbjj18prcykc96rqcn699pnqw6vybwj2mpbbbdw2lr3q8b7"; depends=[crosstalk htmltools htmlwidgets jsonlite knitr magrittr]; }; rglobi = derive2 { name="rglobi"; version="0.2.27"; sha256="12rqd92i0n7lgnp57a4pfp1fpnhm8v0lmmlfzcy0d8vhvzwgfhw7"; depends=[curl RCurl readr rjson]; }; rglwidget = derive2 { name="rglwidget"; version="0.2.1"; sha256="0siqxn3gyl98i84p0yha821b4rdrp2i0942mkx819wnf7qwrpqcv"; depends=[rgl]; }; @@ -15136,6 +15173,7 @@ in with self; { rgrass7 = derive2 { name="rgrass7"; version="0.2-6"; sha256="0k11qm2fc7bxwlajbrk8k49qf65ca4z71f6cynas8ngq4csyzr5r"; depends=[XML]; }; rgrassdoc = derive2 { name="rgrassdoc"; version="1.0.0"; sha256="18fcacf4v9n8cd27rc2lidwqm04151ya30pcs0bfhkssz80x0zds"; depends=[cli rlang rstudioapi xml2]; }; rgsp = derive2 { name="rgsp"; version="0.2.0"; sha256="1fk0k479srfr0f4a5abyzcrzwy9hr1v5xf0jgs36fbim9bh7njlc"; depends=[dplyr magrittr tibble]; }; + rgtmx = derive2 { name="rgtmx"; version="0.1.4"; sha256="0zqab6zhfkc302nsa13nbi5bc45xwrhsrn42g2jnjw2xpnfk3ynz"; depends=[httr jsonlite]; }; rgugik = derive2 { name="rgugik"; version="0.3.1"; sha256="17cvxbjjzyf4v8pwcwikb02qrbwgsr6f6bh4brs48zh1jvzbcgzd"; depends=[jsonlite openssl sf]; }; rgw = derive2 { name="rgw"; version="0.3.0"; sha256="0hzkajmvqkmv6c238rdgyc6g16h96d5a0lnajnn5m87j0gwsl6wa"; depends=[]; }; rhandsontable = derive2 { name="rhandsontable"; version="0.3.8"; sha256="07fj6npq65pq836vdwblkhprdaq4i4f13cwdmm9gmxrnk72xj7lh"; depends=[htmlwidgets jsonlite magrittr]; }; @@ -15150,6 +15188,7 @@ in with self; { rhosp = derive2 { name="rhosp"; version="1.10"; sha256="1k0rb4fchjlzinky6ysdvyk0xjsx5986aqwn3yc6s7m3v7y9wb9m"; depends=[]; }; rhub = derive2 { name="rhub"; version="1.1.1"; sha256="05b4phrny85fshismspjbaz1h0klg1fpy4b309si94pnqffxaqx6"; depends=[assertthat callr cli crayon desc digest httr jsonlite parsedate pillar prettyunits processx R6 rappdirs rcmdcheck rematch tibble uuid whoami withr]; }; rhymer = derive2 { name="rhymer"; version="1.1.0"; sha256="00piml975chmmm3ipskzhfbbp5sq47yg5a78hsisssbzwwxsmbs0"; depends=[httr jsonlite]; }; + rhype = derive2 { name="rhype"; version="0.0.1"; sha256="148ssg1rxhw5wsm989fws5dc6lrx23nai22awxmpr1lx06khrm6a"; depends=[R6]; }; ri = derive2 { name="ri"; version="0.9"; sha256="00y01n9cx95bjhdpnh7vi0xd5p6al3sxbjszbyxafn7m9mygmnhv"; depends=[]; }; ri2 = derive2 { name="ri2"; version="0.2.0"; sha256="0zadczx7awymn420hf15sci5z1hq5rpid866gpa1wmrhcyh177nh"; depends=[estimatr generics ggplot2 pbapply randomizr]; }; ribd = derive2 { name="ribd"; version="1.3.0"; sha256="1vidhghqq2g9v4l7hwq39llbbps8hrfpy1i9s170gak1d38dkciq"; depends=[glue kinship2 pedtools slam]; }; @@ -15278,7 +15317,7 @@ in with self; { rngwell19937 = derive2 { name="rngwell19937"; version="0.6-0"; sha256="0m6icqf7nckdxxvmqvwfkrpjs10hc7l8xisc65q8iqpnpwl5p2f6"; depends=[]; }; rnn = derive2 { name="rnn"; version="1.4.0"; sha256="0k960jylbvg8r453430d8dpdzydkk3yr5np8rxkay79533ikrcgy"; depends=[shiny sigmoid]; }; rnoaa = derive2 { name="rnoaa"; version="1.3.4"; sha256="1yrasq4wgi5q783zyv00xxqzv0r8mrzdv9q7mkabawdmpxji3f1y"; depends=[crul data_table dplyr geonames ggplot2 gridExtra hoardr isdparser jsonlite lubridate rappdirs scales tibble tidyr tidyselect XML xml2]; }; - rnpn = derive2 { name="rnpn"; version="1.2.3"; sha256="13dkl66x9lpm7ycql53by6vln24q8lira2sjd4rvpxghjy1czfva"; depends=[curl data_table httr jsonlite magrittr plyr raster rgdal sp tibble XML]; }; + rnpn = derive2 { name="rnpn"; version="1.2.4"; sha256="0lq9c5in0pf3km6zvfnn71wbh34lk3hgav0b9waspmzsgki8fvl1"; depends=[curl data_table httr jsonlite magrittr plyr raster rgdal sp tibble XML]; }; rnr = derive2 { name="rnr"; version="0.2.1"; sha256="1z9bab3qmq8d79bcvjzldbxlah2w8mqp2ifd0cn1348dafwa0dhi"; depends=[assertthat purrr]; }; rnrfa = derive2 { name="rnrfa"; version="2.0.4"; sha256="0sy64bgb94ksgcy37kmj61iphf66i0jpx0qlrcsr24zr92syc1n2"; depends=[curl ggmap ggplot2 httr jsonlite lubridate rgdal sp tibble zoo]; }; roadoi = derive2 { name="roadoi"; version="0.7.1"; sha256="1diprwir4agp2ifcgfsla1kd5m0y5cnc7ixhh6pqdvlgax5wx96w"; depends=[dplyr httr jsonlite miniUI plyr purrr rlang shiny tibble tidyr]; }; @@ -15297,6 +15336,7 @@ in with self; { robis = derive2 { name="robis"; version="2.8.2"; sha256="0nlvp9w9j2kyv0rrsjkzr3sj77ciz8ink3yr615sjc69iqic34aw"; depends=[curl data_table dplyr ggplot2 httpcache httr jsonlite leaflet mapedit purrr rlang sf stringr tibble tidyr tidyselect xml2]; }; robmed = derive2 { name="robmed"; version="0.9.0"; sha256="0xjq97jy72hcc03s7z5ckl4f9jwsy2sbhwsr8r7hxgrcc8g1zvwf"; depends=[boot ggplot2 quantreg robustbase shiny sn]; }; robmixglm = derive2 { name="robmixglm"; version="1.2-2"; sha256="117dhnnj55hihpzim45dw3cjm4ma6w21d8j77fybyri2bmpvlypa"; depends=[actuar bbmle boot doParallel doRNG fastGHQuad foreach MASS numDeriv Rcpp VGAM]; }; + robnptests = derive2 { name="robnptests"; version="1.0.0"; sha256="0bk3ngwav3r00lf2lb8hq2h578mkfc48gcm845lyxyn7i87vglgg"; depends=[checkmate gtools Rdpack robustbase statmod]; }; robomit = derive2 { name="robomit"; version="1.0.6"; sha256="1yma6m4bxy3hikc9kx7mslqgq1fpi4my7qij9pz77ag836r9hcxm"; depends=[broom dplyr ggplot2 plm tibble tidyr]; }; robotstxt = derive2 { name="robotstxt"; version="0.7.13"; sha256="1x5sachf7g5c2aj1mg3z2lf60723k1ad80bdr89szkgi92jkfal7"; depends=[future future_apply httr magrittr spiderbar stringr]; }; robreg3S = derive2 { name="robreg3S"; version="0.3"; sha256="0rv8qh98wws1f40d1kmysyy9qin0ngsvwq63cnxbwi290wsnrvls"; depends=[GSE MASS robustbase]; }; @@ -15365,7 +15405,7 @@ in with self; { rorcid = derive2 { name="rorcid"; version="0.7.0"; sha256="1d0s5w48ksyj152nc4xq5w0nsimab8jc5fgspdwnbas2g8a52igr"; depends=[crul data_table fauxpas httr jsonlite tibble xml2]; }; rorqual_morpho = derive2 { name="rorqual.morpho"; version="0.1.1"; sha256="1475yhb5qwj4zpsc4gqqpzs7qvyddxwc63i1f4rhnv6id2hi4msp"; depends=[dplyr magrittr]; }; rorutadis = derive2 { name="rorutadis"; version="0.4.2"; sha256="13a7xj4qw1nd8xgrqhrki3php960lgy9gy38sg4kpvs4j2rwijzc"; depends=[ggplot2 gridExtra hitandrun Rglpk]; }; - rosetta = derive2 { name="rosetta"; version="0.3.8"; sha256="1krc2254z1sy5gi8alvq12bmvmcm16ynpngvasxab09jjfgjsp17"; depends=[car diptest ggplot2 ggrepel gridExtra kableExtra knitr lavaan lme4 multcompView pander plyr psych pwr rio rmdpartials ufs viridis]; }; + rosetta = derive2 { name="rosetta"; version="0.3.9"; sha256="104k6j7v41czd4g1qwifmig3zsjs3l4q5mvfab81przdb1m6k5kd"; depends=[car diptest ggplot2 ggrepel gridExtra kableExtra knitr lavaan lme4 multcompView pander plyr psych pwr rmdpartials ufs viridis]; }; rosetteApi = derive2 { name="rosetteApi"; version="1.14.4"; sha256="166p3dvib0xpvhkb92b3imassv1b9mrblz2m05jai2nzlz0q7hzk"; depends=[httr jsonlite]; }; rosm = derive2 { name="rosm"; version="0.2.5"; sha256="10n3yzhk29i3mzbcg6nkjqgvwc9n53ax0d7imn9l4a9msa06as07"; depends=[abind curl jpeg plyr png prettymapr rgdal rjson sp]; }; rospca = derive2 { name="rospca"; version="1.0.4"; sha256="1pxm34xsc2610n0i6dwcm4rhn016yqb03f8vrm93r7285c04n4q7"; depends=[elasticnet mrfDepth mvtnorm pcaPP pracma robustbase rrcov rrcovHD]; }; @@ -15447,7 +15487,7 @@ in with self; { rrtable = derive2 { name="rrtable"; version="0.2.1"; sha256="1hblrxn7vixcp32j3cij0xrkzvk31agi9dqgxrimcrzs7gjcd1j5"; depends=[devEMF editData flextable ggplot2 ggpubr magrittr moonBook officer purrr readr rlang rmarkdown rvg shiny shinyWidgets stringr ztable]; }; rrum = derive2 { name="rrum"; version="0.2.0"; sha256="0w0f2n14if2b8x7n6v8y8q2vghd8j7xm1xhpxnvy3z50flinwgm7"; depends=[Rcpp RcppArmadillo rgen simcdm]; }; rsae = derive2 { name="rsae"; version="0.1-5"; sha256="1f3ry3jwa6vg2vq2npx2pzzvfwadz8m48hjrqjk860nfjrymwgx5"; depends=[]; }; - rsample = derive2 { name="rsample"; version="0.1.0"; sha256="00w8r0p499fm8cyw297gznr83mbgy9a3znzpbgj0zq9dry1a266b"; depends=[dplyr ellipsis furrr generics lifecycle purrr rlang slider tibble tidyr tidyselect vctrs]; }; + rsample = derive2 { name="rsample"; version="0.1.1"; sha256="01xwhj4zfvxbv9cjb6mbz3aphxqc3cnjjx1xy2yx2wd94fbka42z"; depends=[dplyr ellipsis furrr generics lifecycle purrr rlang slider tibble tidyr tidyselect vctrs]; }; rsatscan = derive2 { name="rsatscan"; version="0.3.9200"; sha256="00vgby24jknq8nl7rnqcwg7gawcxhwq8b7m98vjx2hkqx39n4g21"; depends=[foreign]; }; rsbp = derive2 { name="rsbp"; version="0.1.0"; sha256="0aardngvj9apn8q5vhfpv67rf7d5iqb7xdq7rh8xmgr8341fvbgc"; depends=[dplyr lubridate magrittr purrr reshape2 tibble tidyr xml2]; }; rscala = derive2 { name="rscala"; version="3.2.19"; sha256="1wq0wrdbh0gi0bx4m9526qlbjm7nxxqgc17ikdx5mrhcy2f61hjk"; depends=[]; }; @@ -15492,7 +15532,7 @@ in with self; { rstatix = derive2 { name="rstatix"; version="0.7.0"; sha256="0330y8iziffqg8j9j5h9zv4qcdyf8ybhmzxrr9fzq9nc6bf1gbm5"; depends=[broom car corrplot dplyr generics magrittr purrr rlang tibble tidyr tidyselect]; }; rstatscn = derive2 { name="rstatscn"; version="1.1.3"; sha256="07w7ixq1faq7mif2ksxcgl8n6ali9h0wx0nb2yz4kbdgvz68r7b9"; depends=[httr jsonlite]; }; rstiefel = derive2 { name="rstiefel"; version="1.0.1"; sha256="063nj6k2qzc5wd1dk6m6ld16sk2vlfa8ic86gc4qkqsla8l82fgg"; depends=[]; }; - rstoat = derive2 { name="rstoat"; version="1.0.1"; sha256="10ksslz675dgpd8ri4d6ranpabl9940g127i7sbhvccdgvz2j44i"; depends=[curl httr jsonlite keyring]; }; + rstoat = derive2 { name="rstoat"; version="1.0.2"; sha256="0npwv33a7axwhnfyz39nh0x5kk4q3chscings3msx532lzvif0cl"; depends=[curl httr jsonlite keyring]; }; rstpm2 = derive2 { name="rstpm2"; version="1.5.2"; sha256="0c6l3z250b2kn6mh2xyb0bd2y5nsbj11n9xfi51dac9s8xq3v7m4"; depends=[bbmle BH deSolve fastGHQuad mgcv Rcpp RcppArmadillo survival]; }; rstream = derive2 { name="rstream"; version="1.3.6"; sha256="1mr869hff5wdpw6a7x71366y8dxf9vljbb11fssfkhcf7hm2ipnj"; depends=[]; }; rstudio_prefs = derive2 { name="rstudio.prefs"; version="0.1.7"; sha256="1b93hakw5wn8fp99zp22rm8yd27m1884ig1xx5bbcifgxanvic57"; depends=[cli dplyr fs jsonlite purrr rappdirs rlang rstudioapi rvest tibble]; }; @@ -15549,6 +15589,7 @@ in with self; { ruler = derive2 { name="ruler"; version="0.2.4"; sha256="159k7453jb37zgjg9rcgz566mz2827dpfq5gm40r6zgkia4z3apx"; depends=[dplyr keyholder magrittr rlang tibble tidyr]; }; rules = derive2 { name="rules"; version="0.1.2"; sha256="1mmwlrybkv2xq49rwfv2d60wzl6hiq9jdyy9blw24vlvbyp0c42p"; depends=[dials dplyr generics modeldata parsnip purrr rlang stringr tibble tidyr]; }; rumidas = derive2 { name="rumidas"; version="0.1.1"; sha256="1hnkjj689kn7sx5gvjrh1x3n5pickb9d0adb5n0grjq4j5ympbns"; depends=[highfrequency lubridate maxLik Rdpack roll tseries xts zoo]; }; + runcharter = derive2 { name="runcharter"; version="0.2.0"; sha256="0n4jkgvlbpafjks22fjackazp246c7skphirjsrzkrg169qwdin0"; depends=[data_table ggplot2 magrittr zoo]; }; runes = derive2 { name="runes"; version="0.1.0"; sha256="1s2vhwya434q70j4aq4qbds8wivscc5cyldr5pch7p41nqj0j7aw"; depends=[]; }; runexp = derive2 { name="runexp"; version="0.2.1"; sha256="0pcxwz0kpfrcsfalwlcwp81k3dyc9rqm9rba25xkp51bwz5scv64"; depends=[doParallel foreach]; }; runjags = derive2 { name="runjags"; version="2.2.0-3"; sha256="0a5m1nlyrph22s0crmajacy4n4fw9j0bmg1srkgfrygcryqc07qv"; depends=[coda lattice]; }; @@ -15680,7 +15721,6 @@ in with self; { sapevom = derive2 { name="sapevom"; version="0.2.0"; sha256="0vq4rx85pdjc0wjxjf7wj8j5qs3cb20hwhlc2ypbgrlw7zkcp1z4"; depends=[]; }; sapfluxnetr = derive2 { name="sapfluxnetr"; version="0.1.2"; sha256="073sdsq9a4dijmya3pcckb45wr1axraymwragwpmvbsb4rfw9zi7"; depends=[assertthat dplyr furrr ggplot2 glue lubridate magrittr purrr rlang stringr tibble tidyr]; }; saqgetr = derive2 { name="saqgetr"; version="0.2.21"; sha256="0s7mmc8gqx89697wkv369x6sp3d1wha4q2zkkwikh835i3alx4zd"; depends=[dplyr httr lubridate magrittr purrr readr stringr tidyr]; }; - sara4r = derive2 { name="sara4r"; version="0.0.8"; sha256="0b8ir25f0348pd2ckwzv1pyz3iz98zy09baih3rkgxxn8hjdnxj7"; depends=[raster rgdal RGtk2 sp]; }; sarima = derive2 { name="sarima"; version="0.8.5"; sha256="1850h8rly6kx8lsnpyh16nw69jhmgh5ggp9c8knqz2bm64s7xlwa"; depends=[dplyr FitAR FitARMA FKF Formula KFAS lagged ltsa numDeriv PolynomF Rcpp RcppArmadillo Rdpack]; }; sarp_snowprofile = derive2 { name="sarp.snowprofile"; version="1.0.0"; sha256="02g7d5kilfkhqxm02jkhkraqbamxaj1qzzi150k6m55d5bfy4wih"; depends=[data_table xml2]; }; sarp_snowprofile_alignment = derive2 { name="sarp.snowprofile.alignment"; version="1.0.2"; sha256="1yh4ybnscjzps28ncqd46xzv88fjcn4bhcx6rwz8kl1m253c4wpl"; depends=[dtw sarp_snowprofile shiny]; }; @@ -15699,6 +15739,7 @@ in with self; { saturnin = derive2 { name="saturnin"; version="1.1.1"; sha256="0cjp4h1s9ivn17v8ar48mxflaj9vgv92c8p9l2k5bc9yqx9mcs36"; depends=[Rcpp RcppEigen]; }; saves = derive2 { name="saves"; version="0.5"; sha256="1b4mfi2851bwcp0frx079h5yl6y1bhc2s8ziigmr8kwy1y1cxw10"; depends=[]; }; savonliquide = derive2 { name="savonliquide"; version="0.2.0"; sha256="1f1s2pzvpqrcb68fqk4ivpimwsphnjjx3b42jivw63y7q7ak4azh"; depends=[crayon glue htmltools httr]; }; + sawnuti = derive2 { name="sawnuti"; version="0.1.0"; sha256="18mgpd9y54awxml5mz4bvwazy3iqnpwghr18hkv76iafi72d55az"; depends=[]; }; saws = derive2 { name="saws"; version="0.9-6.2"; sha256="1ikvky45inz65djv1c9v749a5lq4m0xlzhm4p12am25qyv08hgjz"; depends=[gee]; }; sazedR = derive2 { name="sazedR"; version="2.0.2"; sha256="0v8ap9ivwj5h4w2iwhww16v1jm6jpkkphvkh5vq06mv1a72p0inz"; depends=[bspec dplyr fftwtools pracma zoo]; }; sbfc = derive2 { name="sbfc"; version="1.0.2"; sha256="1bwwy4yw8wfvmisiqwswd78dy4bjgmhcv0aki1x2sslzazmdy23y"; depends=[DiagrammeR discretization Matrix Rcpp RcppArmadillo]; }; @@ -15752,7 +15793,7 @@ in with self; { scdensity = derive2 { name="scdensity"; version="1.0.2"; sha256="173xm3bf8vxl30zk4n451al7m003byg9q4d1l1pfyfa4xnv8qdg9"; depends=[lpSolve quadprog]; }; scdhlm = derive2 { name="scdhlm"; version="0.5.2"; sha256="147kqr65gxy44nj9rj4jbw590pbqspli4dpkgdq4hj9x1daww2ql"; depends=[lmeInfo nlme readxl]; }; scenario = derive2 { name="scenario"; version="1.0"; sha256="0v1b00kiny21yx4qkk2x51cy1zqibdnd68z76qia7h5py28yhxsi"; depends=[]; }; - scgwr = derive2 { name="scgwr"; version="0.1.2-2"; sha256="0qna5p9rj4mmb5lz3bax3r2cpjdggwgj0ys0g36zgj3i3rls8gvw"; depends=[dplyr FNN optimParallel sp spData]; }; + scgwr = derive2 { name="scgwr"; version="0.1.2-21"; sha256="15pwasxkwirr2wwf8w02cy8zx0bqavzyfixjz3m37c1llrhddpka"; depends=[dplyr FNN optimParallel sp spData]; }; schemr = derive2 { name="schemr"; version="0.1.0"; sha256="0w29la0mh5bvij52r8jgfl47cgm0xc53702ms5r4jv0pdd49qlg8"; depends=[apcluster dplyr ggplot2 magrittr OpenImageR purrr stringr]; }; schoRsch = derive2 { name="schoRsch"; version="1.9.1"; sha256="0f823z48s50jhcphqqivchrmkiwqg25nc01c17kjpzzryd2fi5zs"; depends=[]; }; schoenberg = derive2 { name="schoenberg"; version="2.0.2"; sha256="17pbw9266r9lv9blygmvq9285kcrcy07jaqrj3zfa2pg0zyvhjvm"; depends=[crayon]; }; @@ -15790,7 +15831,7 @@ in with self; { scrobbler = derive2 { name="scrobbler"; version="1.0.2"; sha256="14nnqcjrcc5xcdn2swwj0j2jsw5maayd9ba06s6d5i88png2xhv5"; depends=[httr jsonlite]; }; scrollrevealR = derive2 { name="scrollrevealR"; version="0.2.0"; sha256="0k8ffapwxpb25wphm76arma095hrh3wf0gpkx1z6g4rplahf4jxa"; depends=[glue htmltools]; }; scrypt = derive2 { name="scrypt"; version="0.1.3"; sha256="14iblgbp9v2by8fjbrpsd59iknp5babcz7j3yv1yxxzcwyb6wrrm"; depends=[Rcpp]; }; - scs = derive2 { name="scs"; version="1.3-2"; sha256="10z5619gbnnygk8pkdx2qji56jlv1q6c1z4581pdkd9sfnhg1yp3"; depends=[]; }; + scs = derive2 { name="scs"; version="3.0-0"; sha256="18f1h3j1vzvkr5llqv98026ilrqvrdzckaacscwadzcw99rb2mqz"; depends=[]; }; sctransform = derive2 { name="sctransform"; version="0.3.2"; sha256="1p3m6i28nlxh6r609syn88cwlbdpl3dw44dy3gsijk2ibq20mfsx"; depends=[future future_apply ggplot2 gridExtra MASS Matrix matrixStats Rcpp RcppArmadillo reshape2]; }; scuba = derive2 { name="scuba"; version="1.11-0"; sha256="0g2n8clr2c0cb0jvfz1g9zv8m72yqwmb3p726k89dzma2lkyramd"; depends=[]; }; scutr = derive2 { name="scutr"; version="0.1.2"; sha256="0wq20zvn839iws9qzaknfisr9r2pipdcvxfjvqmk1bw9irfgj3gm"; depends=[mclust smotefamily]; }; @@ -15809,7 +15850,7 @@ in with self; { sde = derive2 { name="sde"; version="2.0.15"; sha256="0gxyhq9lafd62y68h7fd746a3jz3jdsm0shgwm2ylmp4a2f5cdmm"; depends=[fda MASS zoo]; }; sdef = derive2 { name="sdef"; version="1.7"; sha256="0x2b8shp02ik0dd11wi3jcrl9h9m963fnkfy47fwwhav9x6jg0jf"; depends=[]; }; sdetorus = derive2 { name="sdetorus"; version="0.1.8"; sha256="1bf622k9szas3bfxz9f82dn28l1hdqxzpvgqwvzygy9vp2gi4gyp"; depends=[colorRamps mvtnorm Rcpp RcppArmadillo]; }; - sdm = derive2 { name="sdm"; version="1.0-89"; sha256="1qi2hc06wnyz9apfpbypngvs8w20r1jq3mr6l6xpjdyg6ks1m0rc"; depends=[raster sp]; }; + sdm = derive2 { name="sdm"; version="1.1-8"; sha256="130zkhhq1l99r16dii21i87wphb4n10xq70rgimm4x0q7zn0jv5y"; depends=[raster sp]; }; sdmApp = derive2 { name="sdmApp"; version="0.0.2"; sha256="1rfzy3bbdya7amyr43dhhv4cvmrxcan0fv167ldpbf0m9snqrnrx"; depends=[raster shiny sp]; }; sdmpredictors = derive2 { name="sdmpredictors"; version="0.2.10"; sha256="12isgysfpmaj7r5zvs9mc3cd8jkinqqhmhzmfdvabddman6whhzk"; depends=[R_utils raster RCurl rgdal]; }; sdmvspecies = derive2 { name="sdmvspecies"; version="0.3.2"; sha256="19avkag13ij1k65vqhmvcy8j50j8vrgw4mjc49x8i63w3d4z1wxh"; depends=[psych raster]; }; @@ -15827,10 +15868,11 @@ in with self; { season = derive2 { name="season"; version="0.3.13"; sha256="0sn10vxdqvds162i4d7jg6if15h9p8fxia27ihlr4kfyp9113g98"; depends=[ggplot2 MASS survival]; }; seasonal = derive2 { name="seasonal"; version="1.8.4"; sha256="1mqlck752d9hmzmkmjw9qq7g9kkrwbzglsm7sx0xc03qbm5zxd3k"; depends=[x13binary]; }; seasonalclumped = derive2 { name="seasonalclumped"; version="0.3.2"; sha256="0a9ryds9l00dw6pr9s6r6fzrby53zz63idjywh127a4ga48jwnq3"; depends=[ggplot2 gridExtra magrittr TTR]; }; + seasonalityPlot = derive2 { name="seasonalityPlot"; version="0.99.3"; sha256="12z15qlvyj9rrljzqbhgh384x53qqylwmzias4bhx0k3hq2qvsrj"; depends=[dygraphs htmltools magrittr plotrix quantmod zoo]; }; seasonalview = derive2 { name="seasonalview"; version="0.3"; sha256="1l705yc7ssldsfckbgnvd95sh3zzhpkmf1rr6ar2s60s3wsyly4n"; depends=[dygraphs htmlwidgets openxlsx seasonal shiny shinydashboard xtable xts zoo]; }; seastests = derive2 { name="seastests"; version="0.15.4"; sha256="1xy2hacd57v75y5snhn4al7bi71wr994jy6m2sdr6qzzsd5pbgpc"; depends=[forecast xts zoo]; }; seawaveQ = derive2 { name="seawaveQ"; version="2.0.2"; sha256="1x4vvassal1lwb9xnwisrhlx2maaqxl84h7klfy8yg9x80fdrhsw"; depends=[lubridate plyr reshape2 rms survival]; }; - secr = derive2 { name="secr"; version="4.4.7"; sha256="1n4w178r4nnq8fkgx42blysvi3vbmaiqn6311lhrvhg93z3gn1yx"; depends=[abind BH MASS mgcv nlme raster Rcpp RcppEigen RcppNumerical RcppParallel sp stringr]; }; + secr = derive2 { name="secr"; version="4.4.8"; sha256="0lwnqfqc9bwz4fwsp9xis5rb1lykjv6vabbh14hpcpdvsqzslpba"; depends=[abind BH MASS mgcv nlme raster Rcpp RcppEigen RcppNumerical RcppParallel sp stringr]; }; secrdesign = derive2 { name="secrdesign"; version="2.5.11"; sha256="02fysbx6w1iw2ig54f9sgr74c40wfjwiwpdmxdjymsaynqnm9anl"; depends=[abind openCR secr]; }; secret = derive2 { name="secret"; version="1.1.0"; sha256="063gpyc2s2l6zw1j8b8ppzsv9kjsf0s77s5wcn7ipmwkj8qr2g4b"; depends=[assertthat curl jsonlite openssl rprojroot]; }; secrettext = derive2 { name="secrettext"; version="0.1.0"; sha256="129v524yyb464mcij7hvzv05cxliaz5nm7v30g9g9ppskcdqhsx2"; depends=[dplyr magrittr rlang stringr testthat tidyr]; }; @@ -15879,6 +15921,7 @@ in with self; { semPower = derive2 { name="semPower"; version="1.2.0"; sha256="1y3j6b3ab19fqxzqrrssjcj7f0za0vkwq97s7qs6hwj9yfsg1nas"; depends=[]; }; semTable = derive2 { name="semTable"; version="1.8"; sha256="0qr420rnz59q8arf6x05iy1zyh7pv31ldi2rsw1j2a00fbpp4ndf"; depends=[kutils lavaan plyr stationery xtable]; }; semTools = derive2 { name="semTools"; version="0.5-5"; sha256="1dpsn43ifvfy5v8w2fqdy54yclmy0d3qlzix67lflr2r7isq7y6x"; depends=[lavaan pbivnorm]; }; + semantic_dashboard = derive2 { name="semantic.dashboard"; version="0.2.1"; sha256="0518pdxgjjv8ql1aaysk64pv1pa01bbg3s7qdibw1v0c6pcf3adb"; depends=[checkmate glue htmltools shiny shiny_semantic]; }; semdiag = derive2 { name="semdiag"; version="0.1.2"; sha256="0kjcflw7dn907zx6790w7hnf5db6bf549whfsc0c2r173kf13irp"; depends=[sem]; }; semdrw = derive2 { name="semdrw"; version="0.1.0"; sha256="16hm1ifgspnxnlf3rfg5ylmql2fq91ig8nc5953ggyhfrjwbqx15"; depends=[dplyr lavaan psych semPlot semTools shiny shinyAce]; }; semds = derive2 { name="semds"; version="0.9-6"; sha256="10kvcmcy6qa2r5sram6azqgzl528rghfxgw2f2bq2fvhhq127dzq"; depends=[minpack_lm pracma]; }; @@ -15929,7 +15972,7 @@ in with self; { seqhandbook = derive2 { name="seqhandbook"; version="0.1.0"; sha256="0zncpjabazci92wzw126i491669gidkyiw7zjp7iw23m6jaf71l4"; depends=[TraMineR]; }; seqinr = derive2 { name="seqinr"; version="4.2-8"; sha256="1xz9spln6s9mcwpgcv1m4jymn4gnl1bb6vh90bphqcn0vvlk8jsq"; depends=[ade4 segmented]; }; seqmagick = derive2 { name="seqmagick"; version="0.1.5"; sha256="0h1vdsx88k3mpajfv0cgswk2s1560zm6y776b4dqrdkvkcgdbb3g"; depends=[Biostrings magrittr]; }; - seqminer = derive2 { name="seqminer"; version="8.0"; sha256="00jzj8mwb0zaiwlifd41b26mrq9mzigj18nc29dydi0r42hxg16i"; depends=[]; }; + seqminer = derive2 { name="seqminer"; version="8.2"; sha256="097313x72jr2q6dp8ma33w8kyp3gfw71snf1qx2maxbwwnysk085"; depends=[]; }; seqmon = derive2 { name="seqmon"; version="2.4"; sha256="1aqrg9aqvsabg5mm9jfj5vaxxaapfs1qw3yyzbx7vsspcgjdhyca"; depends=[]; }; seqtest = derive2 { name="seqtest"; version="0.1-0"; sha256="1bdfww9szh7h278id5xpfc39mxkcix3yvsdwc68wx3q3x0wxhqhq"; depends=[]; }; sequence = derive2 { name="sequence"; version="2.0"; sha256="0r5h96gcp18lwgrl2pjlr71xqspkf6qmm1m0xjq5vadalfa7y294"; depends=[]; }; @@ -15941,7 +15984,7 @@ in with self; { seriation = derive2 { name="seriation"; version="1.3.1"; sha256="08c37n3xxc4n4vbkw38k3l3hdlmck8drqpl6z274vkgi2sqv8qyf"; depends=[cluster colorspace gclus MASS qap registry TSP]; }; serieslcb = derive2 { name="serieslcb"; version="0.4.0"; sha256="1ip4k2xzg06hwsni62ai1whs1zzhwlf94507inpfpqz3jmmafrhq"; depends=[gplots shiny]; }; seroincidence = derive2 { name="seroincidence"; version="2.0.0"; sha256="0sam4y7w6prswz0izkm1a9v2k5rv7z22g1ajy15n9xix9aml5ms4"; depends=[]; }; - serp = derive2 { name="serp"; version="0.2.1"; sha256="04rcs0p9yig9i0ckxispgdf13x4jabs9fl3kirxkllda73pxa4mm"; depends=[ordinal]; }; + serp = derive2 { name="serp"; version="0.2.3"; sha256="0fbhcn10vvyg29sg5i39i004vks4in21br1gm8zhlx9sqmw7m0l0"; depends=[crayon ordinal]; }; serpstatr = derive2 { name="serpstatr"; version="0.1.0"; sha256="1myxw3dh3mkai803dnfdd1zyr2mjzsd2pw00l1fwmmbdplqg9q20"; depends=[httr]; }; serrsBayes = derive2 { name="serrsBayes"; version="0.5-0"; sha256="1w8fs9k4zhy0hwkm30dvi360n28cl2gn9vdqaak64g0nlvb9jy1w"; depends=[Matrix Rcpp RcppEigen truncnorm]; }; servosphereR = derive2 { name="servosphereR"; version="0.1.1"; sha256="0m1fjd3f1s2ss54xmcrm3p0c33hhi2dj0vim790g4y0mw2aicc8l"; depends=[data_table dplyr magrittr purrr rlang]; }; @@ -16019,6 +16062,7 @@ in with self; { shiny_react = derive2 { name="shiny.react"; version="0.2.3"; sha256="19k1rvq47s56cipxqbalgzmhwdxw3ic5bd9qqnvsw75ynbhpa959"; depends=[glue htmltools jsonlite logger rlang shiny]; }; shiny_reglog = derive2 { name="shiny.reglog"; version="0.4.1"; sha256="1azhcz2ffrc82f9yfqfivb9m2alanl4wx1i8q8pyympqw09gg5zy"; depends=[DBI dplyr googlesheets4 lubridate R6 RSQLite scrypt shiny]; }; shiny_router = derive2 { name="shiny.router"; version="0.2.2"; sha256="1jxk1hxi42kyi5dahszhl9nzppa99svk1vhwf2d15apfrg2d6ivc"; depends=[htmltools magrittr shiny]; }; + shiny_semantic = derive2 { name="shiny.semantic"; version="0.4.3"; sha256="124bxgbbzx4xkzxqzr16brqdm12ra0pvx1qhqkvp8alvjm0s54vg"; depends=[glue htmltools htmlwidgets jsonlite magrittr purrr R6 shiny]; }; shiny_worker = derive2 { name="shiny.worker"; version="0.0.1"; sha256="1l30dx46s3q1x9nd42r6dracd3lqkjk80r9jyjqy8lmdsq48300i"; depends=[future R6 shiny]; }; shinyAce = derive2 { name="shinyAce"; version="0.4.1"; sha256="1m33dfm2kjirvgix7ybv1kbzgjkicdpv411g9c0q3fw6rnyhfxxn"; depends=[jsonlite shiny]; }; shinyBS = derive2 { name="shinyBS"; version="0.61"; sha256="0rhim4mbp4x9vvm7xkmpl7mhb9qd1gr96cr4dv330v863ra2kgji"; depends=[htmltools shiny]; }; @@ -16028,7 +16072,7 @@ in with self; { shinyDND = derive2 { name="shinyDND"; version="0.1.0"; sha256="0nkvz4hmjzmxlzj4vkjrdy8xlbxapg1amk180irgvwicqldi4jpm"; depends=[htmltools shiny]; }; shinyEffects = derive2 { name="shinyEffects"; version="0.2.0"; sha256="1ajar09hmrk7vcw89wkgvkz2yl0cfnkz915b57w1lmbvpxzgsq3i"; depends=[htmltools shiny]; }; shinyFeedback = derive2 { name="shinyFeedback"; version="0.4.0"; sha256="1xfznq2d4wkk0b0y4k25rwg4d3bhn3gxlkf3chfqk44f4rgril11"; depends=[fontawesome htmltools jsonlite shiny]; }; - shinyFiles = derive2 { name="shinyFiles"; version="0.9.0"; sha256="0rsijlx16vd74r7bd8s9zipy71kgpw19v9s85kxj5bmwc6njmbai"; depends=[fs htmltools jsonlite shiny tibble]; }; + shinyFiles = derive2 { name="shinyFiles"; version="0.9.1"; sha256="0f8dfdiar376lx0979ccyghgx5rhr08v5z3z60asrrjsxlq4cs85"; depends=[fs htmltools jsonlite shiny tibble]; }; shinyGovstyle = derive2 { name="shinyGovstyle"; version="0.0.7"; sha256="08lslxzmlzyrphaf0i3pqj21q2iqqskmlr7dnhm4yrfvm6jllglz"; depends=[htmltools jsonlite shiny shinyjs]; }; shinyHeatmaply = derive2 { name="shinyHeatmaply"; version="0.2.0"; sha256="1n7c7dvvb9kqay2phcf0bkwi990x1cjl7js6pq05xx7rli5bc5h4"; depends=[dplyr heatmaply htmltools plotly readxl rmarkdown shiny xtable]; }; shinyIRT = derive2 { name="shinyIRT"; version="0.1"; sha256="01x7nhjs1dx2ldwznhbavc5vzqhgkn73xg395vlf2hgzbxa2ydvj"; depends=[irtoys magrittr mirt psych readxl shiny shinycssloaders shinydashboard]; }; @@ -16189,7 +16233,7 @@ in with self; { simplegraph = derive2 { name="simplegraph"; version="1.0.0"; sha256="1gcpbljp1fgaprxnmq23izf1h2x3p5dnxlylwqsnlcj50bvm46gq"; depends=[]; }; simplegraphdb = derive2 { name="simplegraphdb"; version="2021.03.10"; sha256="0573hrv23nimmf3d8dgdynii79h84a3mfr4xxk3cggxhsxpfmb2i"; depends=[DBI rjson RSQLite]; }; simplermarkdown = derive2 { name="simplermarkdown"; version="0.0.3"; sha256="1670x6fxqgdz471n12b9smfqrfpz282vcax1jsssficgw748lyw4"; depends=[rjson]; }; - simplevis = derive2 { name="simplevis"; version="4.6.0"; sha256="0mfcfin3hq4aai0mc6drmw9asd02xc74pbvyvy1yr3fpf9888nsd"; depends=[dplyr DT forcats ggplot2 htmltools janitor kimisc leaflet leaflet_extras leafpop lubridate magrittr plotly purrr readr rlang scales sf shiny shinycssloaders snakecase stringr tibble tidyr tidyselect viridis]; }; + simplevis = derive2 { name="simplevis"; version="5.0.0"; sha256="0hrv0dgghl9rba2rk2w1q4vg306djnz69hp4daxf462y95nnh1k7"; depends=[dplyr forcats ggplot2 htmlwidgets leafem leaflet leafpop lubridate magrittr purrr rlang scales sf snakecase stars stringr tidyr tidyselect viridis]; }; simplexreg = derive2 { name="simplexreg"; version="1.3"; sha256="1zkh00xbddhgz0qn0a5pj12n0hpx4f5kihpfj71x92pmxpzglcxh"; depends=[Formula plotrix]; }; simplextree = derive2 { name="simplextree"; version="1.0.1"; sha256="18jvzcz4fdsi17j7qdqpjvx6zygvlcvpziikb8qxskaib5180l08"; depends=[magrittr Rcpp]; }; simputation = derive2 { name="simputation"; version="0.2.7"; sha256="0jw0j57pgg06ix7yr01bbv314w2dh08idjvsa46s02xkqn37cb7q"; depends=[gower MASS rpart]; }; @@ -16228,6 +16272,7 @@ in with self; { siteymlgen = derive2 { name="siteymlgen"; version="1.0.0"; sha256="1176fnf39ars5cdjvy5w2k6b92qv51hy86s71sl8ghr0lwdq9f59"; depends=[data_table dplyr lubridate magrittr purrr rlist rmarkdown stringr yaml ymlthis]; }; sitmo = derive2 { name="sitmo"; version="2.0.2"; sha256="1hm89zi38ldgbskyx1cn7gm87yqy7zrxli8q05a36y1ndvazi3j4"; depends=[Rcpp]; }; sitools = derive2 { name="sitools"; version="1.4"; sha256="0c0qnvsv06g6v7hxad96fkp9j641v8472mbphvaxa60k3xc7ackb"; depends=[]; }; + sitree = derive2 { name="sitree"; version="0.1-11"; sha256="0zkcqnf6yj62alcz3d3alhk4aakdm3kpbkzxpddl6m81145p1qql"; depends=[data_table ggplot2]; }; sivs = derive2 { name="sivs"; version="0.2.5"; sha256="16w1yixb2wfgprnfm408l11nz9j28by7sz82x17rzmjb6p3n1jw5"; depends=[doParallel foreach glmnet pROC varhandle]; }; sizeMat = derive2 { name="sizeMat"; version="1.1.2"; sha256="1vbndadsn80ddrg471vp1qxf0gan38w6dkjk1p2npvfb47wdjj2h"; depends=[MASS matrixStats MCMCpack]; }; sjPlot = derive2 { name="sjPlot"; version="2.8.9"; sha256="07b9p5wbb6xmyapg9j6i4cdcj7j9wj9gi30gljj6j2lj1flgdd7q"; depends=[bayestestR datawizard dplyr effectsize ggeffects ggplot2 insight knitr MASS parameters performance purrr rlang scales sjlabelled sjmisc sjstats tidyr]; }; @@ -16241,12 +16286,12 @@ in with self; { skellam = derive2 { name="skellam"; version="0.2.0"; sha256="0r5wbs5h7xc3k2vjxd4axwnxr9cmwm008fcyj1vyixkg8fa680gx"; depends=[]; }; sketch = derive2 { name="sketch"; version="1.1.17"; sha256="17lb4fnlwvdxgsm8iipcx4v6fn1vkf5wr9zwmm6m4p770651z116"; depends=[base64enc glue htmltools jsonlite magrittr purrr rlang rstudioapi shiny]; }; sketcher = derive2 { name="sketcher"; version="0.1.3"; sha256="011lx15whrdj5q5h33h9brkzbn2fnpm1nx9ip1v9xl5xfkbj7952"; depends=[downloader dplyr imager jpeg magrittr png readbitmap stringr]; }; - skewMLRM = derive2 { name="skewMLRM"; version="1.2"; sha256="0hcdq1x9z5p2yz6bv6gr9f6llz74p6187bqyr6q0p7037i6a5705"; depends=[clusterGeneration doParallel foreach MASS matrixcalc moments mvtnorm]; }; + skewMLRM = derive2 { name="skewMLRM"; version="1.3"; sha256="05w3a4cyb4v75pwh9zw2fqjrwz3x9567adysfffmcfgm497kypq4"; depends=[clusterGeneration doParallel foreach MASS matrixcalc moments mvtnorm]; }; skewlmm = derive2 { name="skewlmm"; version="1.0.0"; sha256="1z7rz520vmjqmnak2zgxnnj7yhg7k2phclx3ilvkwzn9v8pd224j"; depends=[dplyr furrr future ggplot2 ggrepel haven moments mvtnorm nlme numDeriv optimParallel purrr]; }; skewt = derive2 { name="skewt"; version="0.1"; sha256="1xm00zfzjv53cq9drfcx7w2ri5dwsq7kajrk2hc1mvw0b6s4x2ix"; depends=[]; }; skilljaR = derive2 { name="skilljaR"; version="0.0.1"; sha256="1qfb4irslbmidjq358bkhadr71armk4jps78xz5bm0kxbj2nljhq"; depends=[dplyr httr jsonlite magrittr purrr]; }; skimr = derive2 { name="skimr"; version="2.1.3"; sha256="02q5l1l1a9m602dg55gbb1zd3ymh0gxy6r815dj8cp769i8hqla1"; depends=[cli crayon dplyr knitr magrittr purrr repr rlang stringr tibble tidyr tidyselect vctrs withr]; }; - sklarsomega = derive2 { name="sklarsomega"; version="3.0"; sha256="1dzf9g553k9cmf5w3h1hl5msfkmpd7iddz3x45vg5bjm38fa9cp2"; depends=[dfoptim extraDistr hash LaplacesDemon Matrix mcmcse numDeriv spam]; }; + sklarsomega = derive2 { name="sklarsomega"; version="3.0-1"; sha256="110j27wjj1z30b7y60lm6jdimb0x5yrj18qyb0m6m2fpsczg93w4"; depends=[dfoptim extraDistr hash LaplacesDemon Matrix mcmcse numDeriv spam]; }; skm = derive2 { name="skm"; version="0.1.5.4"; sha256="06g3bdncq2r56d8k3dr87gqnibypbsps0gj4jxkw9q1sq1yaff3v"; depends=[data_table magrittr plyr Rcpp RcppArmadillo RcppParallel]; }; skmeans = derive2 { name="skmeans"; version="0.2-13"; sha256="1nks9k910fc0m07wpi9ridpyvgnnjlgw821mnvpv8skr4i75zy1w"; depends=[clue cluster slam]; }; sknifedatar = derive2 { name="sknifedatar"; version="0.1.2"; sha256="0zi9anrxg9zkgxlzlfyry5i5zlj3fs8580mp6xckkl096dry9ih0"; depends=[cli dplyr knitr magrittr modeltime parsnip purrr rlang rsample tibble tidyr tune]; }; @@ -16284,7 +16329,6 @@ in with self; { smam = derive2 { name="smam"; version="0.6.0"; sha256="1vgsx1n9gkkjnv5lrrznpfqvh019qcjki6gy625k3ykqg5zg229v"; depends=[doParallel doSNOW EnvStats foreach Matrix nloptr numDeriv Rcpp RcppGSL RcppParallel]; }; smapr = derive2 { name="smapr"; version="0.2.1"; sha256="1gcq66gs6968c5h303dqd2jyw2rcdwxv642ki1cmpdj6ix665dpr"; depends=[httr rappdirs raster rhdf5 rvest xml2]; }; smartDesign = derive2 { name="smartDesign"; version="0.72"; sha256="1mq8h2zwj8mrq4s2bl3s6hzizpdjbl69c984hydxvzx2vgq1v8za"; depends=[knitr]; }; - smartR = derive2 { name="smartR"; version="0.62.3"; sha256="0ardb4arhr7qmr30b3ahf7hkwlys9i420bm8h2688phahgfkk0y8"; depends=[caret chron cluster foreign ggplot2 ggrepel ggthemes gridExtra gstat gsubfn gWidgets2 gWidgets2RGtk2 igraph jpeg jsonlite lattice mapdata mapproj maps maptools marmap mtsdi nnls PBSmapping plyr R6 RColorBrewer reshape2 rgdal rgeos rjags ROCR rpart scales shape sp spdep sqldf vegan]; }; smartmap = derive2 { name="smartmap"; version="0.1.1"; sha256="0pxbjkkknng7xa8ihba69n1a2w9052fsbb0w8fq1y1qrqmmibwdi"; depends=[leaflet magrittr sf]; }; smartsizer = derive2 { name="smartsizer"; version="1.0.3"; sha256="1jfhba8p5flz4v0m770kb3p2gw4vgzpxqb0ngl9fhw30jzkx6nwd"; depends=[MASS]; }; smartsnp = derive2 { name="smartsnp"; version="1.1.0"; sha256="1gzzhys6bja55iclkji254kri6r3iamiw7bv881mp615wi9r3hx2"; depends=[bootSVD data_table foreach Rcpp RcppArmadillo Rfast RSpectra vegan vroom]; }; @@ -16325,6 +16369,7 @@ in with self; { sms = derive2 { name="sms"; version="2.3.1"; sha256="0vr5jy8bxbczaqr9kg0fnanxhv9nj51yzgacrb63k33cs85p981m"; depends=[doParallel foreach iterators]; }; smss = derive2 { name="smss"; version="1.0-2"; sha256="04lgfdcvnzpnpplyl62fy7slyiy8wkqpjjrzmclgqis3c9zkkncp"; depends=[]; }; smurf = derive2 { name="smurf"; version="1.1.2"; sha256="00q54pg42anilhcshhjvv277mkszbpzpkf1g7srs7cjd5skjvsaf"; depends=[catdata glmnet MASS Matrix mgcv RColorBrewer Rcpp RcppArmadillo speedglm]; }; + smvgraph = derive2 { name="smvgraph"; version="0.1.2"; sha256="06pvnrhd3q913nxhk1icj11xkd1is3qi31b0kv6zbc0qkixn1ym7"; depends=[DescTools fmsb MASS shiny shinydashboard sortable]; }; sn = derive2 { name="sn"; version="2.0.0"; sha256="0sl8qzy9isy5fq8qxh1fg5285jzgy895nbgz8gdq5d0r6zdwrmmb"; depends=[mnormt numDeriv quantreg]; }; sna = derive2 { name="sna"; version="2.6"; sha256="0ai0v4538d30m4wks5s3lch1yfmx1ml0nnrz7ihs097lv586a09s"; depends=[network statnet_common]; }; snahelper = derive2 { name="snahelper"; version="1.3.0"; sha256="130pzmnvcqqgpi7h8fn61qrshq61h6w5i25shbng6bbw5kw4kchf"; depends=[colourpicker DT formatR ggplot2 ggraph graphlayouts igraph miniUI rstudioapi shiny]; }; @@ -16421,10 +16466,11 @@ in with self; { spMaps = derive2 { name="spMaps"; version="0.4.0"; sha256="0n9693aam7gsclfhijq7cy61l0w4mm5vf3rjaz5w0jrz77lrkprh"; depends=[raster rgeos sp]; }; spNNGP = derive2 { name="spNNGP"; version="0.1.6"; sha256="12ys92r2xpmnhy6hw8sldcz0y28gnxpwnj6sm5jc1lfyz7k1ww6f"; depends=[coda Formula RANN]; }; spNetwork = derive2 { name="spNetwork"; version="0.2.1"; sha256="0hmg68v5a7d1ixwj9nvh7kd948r7kspar6nd3yp02mgj495ps1z8"; depends=[BH cubature data_table future_apply ggplot2 igraph maptools progressr raster Rcpp RcppArmadillo RcppProgress Rdpack rgeos SearchTrees sp spdep]; }; + spOccupancy = derive2 { name="spOccupancy"; version="0.1.2"; sha256="1h6bw3prxc3bpbx64413bf1j6vm9slgb6gpgh4695czzzgpps9yj"; depends=[abind coda doParallel foreach lme4 RANN spBayes]; }; spTDyn = derive2 { name="spTDyn"; version="2.0.1"; sha256="1wprn2adw4l5pkwkfzdpcr07jxgycx9kaf8w8mfv27nka5hacgqx"; depends=[coda sp spacetime spTimer]; }; spThin = derive2 { name="spThin"; version="0.2.0"; sha256="0j10j1cbbwp3baqm3b59rxlnd643mkx1mirlxpnr1ad2g7xpm69f"; depends=[fields knitr spam]; }; spTimer = derive2 { name="spTimer"; version="3.3.1"; sha256="0lf39n32ifsmbcf35h0g60xniw72mlrzvzax3k6kz5c5k1wszlba"; depends=[coda extraDistr sp spacetime]; }; - spaMM = derive2 { name="spaMM"; version="3.9.13"; sha256="05157vl2728241bylb8zmj6z0xsbshb4qmn2vlazymn60s8x5ppr"; depends=[boot crayon gmp MASS Matrix minqa nlme nloptr pbapply proxy Rcpp RcppEigen ROI]; }; + spaMM = derive2 { name="spaMM"; version="3.9.25"; sha256="01a05f3wbgi0x6ybdym1g673vnqgkb1r1ldk17wwdj58yz5sdq06"; depends=[boot crayon gmp MASS Matrix minqa nlme nloptr pbapply proxy Rcpp RcppEigen ROI]; }; spaa = derive2 { name="spaa"; version="0.2.2"; sha256="163iipz1knxx1lzby9a3n1f014yqkf25z1wpwwy4gbx7sia499d5"; depends=[]; }; space = derive2 { name="space"; version="0.1-1.1"; sha256="09dpksbda4lg5hax47a9h9shjmggza6583slvdj0fldblykpyxck"; depends=[]; }; spaceNet = derive2 { name="spaceNet"; version="1.2"; sha256="1s2672icxs0qvdhl52xhllgvh1i9mjfrn5j3icyw6h61ljbnhy11"; depends=[MASS mclust permute RcppTN Rfast sna vegan]; }; @@ -16497,8 +16543,8 @@ in with self; { spatialfusion = derive2 { name="spatialfusion"; version="0.6-4"; sha256="18ji1pps5kb0mbff620mw7zm6nzyy3nfclmcpl677xd9927apvn9"; depends=[fields Rcpp rstan SDraw sp]; }; spatialnbda = derive2 { name="spatialnbda"; version="1.0"; sha256="14mx5jybymasyia752f3vnr5vmswcavbz8bpqr69vlxphw27qkwk"; depends=[mvtnorm SocialNetworks]; }; spatialprobit = derive2 { name="spatialprobit"; version="0.9-11"; sha256="1cpxxylc0pm7h9m83m2cklrh4jni5x79r5m5gibxi6viahwxn9kc"; depends=[Matrix mvtnorm spdep tmvtnorm]; }; - spatialreg = derive2 { name="spatialreg"; version="1.1-8"; sha256="045fn7zib7asimj43bs9b9mr2fy1fpa31a077bxbqn4729hrdxs2"; depends=[boot coda expm gmodels LearnBayes MASS Matrix nlme spData spdep]; }; - spatialrisk = derive2 { name="spatialrisk"; version="0.6.9"; sha256="06crwxc6bb1r5hypjiikyv71h62ka59bmbw9h32kgm4ks6f8g361"; depends=[classInt colourvalues data_table dplyr fs GenSA geohashTools ggplot2 leafem leafgl leaflet lubridate Rcpp RcppProgress sf tmap units viridis]; }; + spatialreg = derive2 { name="spatialreg"; version="1.2-1"; sha256="10d0gd21s84r7d5i1h62zavb40ws9c6vikrk8qjii25a66rvch2c"; depends=[boot coda expm gmodels LearnBayes MASS Matrix nlme sf spData spdep]; }; + spatialrisk = derive2 { name="spatialrisk"; version="0.7.0"; sha256="0mqi8jrz1msk2aaza67vfp9s21f372mhvbivwxy56fxrl7vp975v"; depends=[classInt colourvalues data_table dplyr fs GenSA geohashTools ggplot2 leafem leafgl leaflet lubridate Rcpp RcppProgress sf tmap units viridis]; }; spatialsample = derive2 { name="spatialsample"; version="0.1.0"; sha256="0w57pl09pamx8mmrwyj2hixxqp9cf0xg06gvsrrg4abjbkj0i1pr"; depends=[dplyr purrr rlang rsample tibble tidyselect vctrs]; }; spatialwarnings = derive2 { name="spatialwarnings"; version="3.0.0"; sha256="1m6dbfngnbzqlbdvm1qvlb743zypf4cqczihdhbhny9mfgmwds5i"; depends=[future future_apply ggplot2 gsl plyr Rcpp RcppArmadillo segmented]; }; spatialwidget = derive2 { name="spatialwidget"; version="0.2.3"; sha256="0j0v0cyqndlg9p7g03gp1br9b2i3p50abzpw67k3cawm96a87crj"; depends=[BH colourvalues geojsonsf geometries jsonify rapidjsonr Rcpp sfheaders]; }; @@ -16521,7 +16567,7 @@ in with self; { spcov = derive2 { name="spcov"; version="1.01"; sha256="1brmy64wbk56bwz9va7mc86a0ajbfy09qpjafyq2jv7gm7a35ph5"; depends=[]; }; spcr = derive2 { name="spcr"; version="2.1"; sha256="08lpcj49sj0bc2vz54wigdb9dqn182c11q31n3sdkc41spgk0s7a"; depends=[]; }; spd = derive2 { name="spd"; version="2.0-1"; sha256="00zxh4ri47b61jkcjf5idl9hhlfld6rhczsnhmjsax59884f2i8m"; depends=[KernSmooth]; }; - spdep = derive2 { name="spdep"; version="1.1-11"; sha256="1ym523dzpiji6c8ypa3gvw8va36gl1gnzcsvdg9drly3mlq42rpr"; depends=[boot coda deldir e1071 expm gmodels LearnBayes MASS Matrix nlme s2 sf sp spData units]; }; + spdep = derive2 { name="spdep"; version="1.1-12"; sha256="1dykhsk5djh62b3zcvpmvm3s87rn8ywzbwblhzivhln0y6pzk9hv"; depends=[boot coda deldir e1071 expm gmodels LearnBayes MASS Matrix nlme s2 sf sp spData units]; }; spdownscale = derive2 { name="spdownscale"; version="0.1.0"; sha256="0pl560km9629iwy13h7359ab7ixzs09hg986kvk0xbnc348srb86"; depends=[]; }; spdplyr = derive2 { name="spdplyr"; version="0.4.0"; sha256="0lijp78wgrky103137vfk3k4s051qppd6jq6s065k9i7y1azbpc1"; depends=[dplyr rlang sp spbabel tibble]; }; spduration = derive2 { name="spduration"; version="0.17.1"; sha256="1hsz4hcw85f1rj2pd8ppzsd1r8fh4yf6axc11yf2hd287ghzzxzy"; depends=[corpcor forecast MASS plyr Rcpp RcppArmadillo separationplot xtable]; }; @@ -16557,7 +16603,6 @@ in with self; { sperrorest = derive2 { name="sperrorest"; version="3.0.2"; sha256="195bdg8fd619z0i8jw1rm1zm2qcdq7hb2h5ynq1lf3a2j0y3fdpl"; depends=[future future_apply ROCR stringr]; }; spex = derive2 { name="spex"; version="0.7.1"; sha256="0lsmh1sywd4si0v10aix44hybwph3gan8w8cxz956dcgkz60p41v"; depends=[crsmeta quadmesh raster reproj sp]; }; spfda = derive2 { name="spfda"; version="0.9.0"; sha256="156vs1f75x0wbf65fwzkhlbda649sryf58xixi7gbfjzn873w111"; depends=[mathjaxr]; }; - spfilteR = derive2 { name="spfilteR"; version="1.1.1"; sha256="0y6jmg4iz584c35r6xs16z8zbs2z5y8g6wshnall7i6g2hv35nnj"; depends=[]; }; spflow = derive2 { name="spflow"; version="0.1.0"; sha256="0a5nirccwcc2z4dn3gxdlhdjz7sxv1r23clawy0kwn4ggdkmphp1"; depends=[coda Matrix Rdpack RSpectra]; }; spfrontier = derive2 { name="spfrontier"; version="0.2.5"; sha256="1vnvwcjbhvbmyn5rp4760amzy8k3y156q629fjymw9rw6zy45pbf"; depends=[ezsim moments mvtnorm numDeriv optimx spdep tmvtnorm]; }; spftir = derive2 { name="spftir"; version="0.1.0"; sha256="07vw8igy698jx671cj6hmf6ll9xvaq81fb6la7j95pqbd6jl284z"; depends=[pracma]; }; @@ -16588,7 +16633,7 @@ in with self; { splines2 = derive2 { name="splines2"; version="0.4.5"; sha256="0vgwgrkrkl2j6pcr98gylm3q60aiqdj9n9ndpj6szzn3ygjr0j9q"; depends=[Rcpp RcppArmadillo]; }; splinetree = derive2 { name="splinetree"; version="0.2.0"; sha256="0gqb3kwca42crrx6fj42ryl5pkxvankhp1chdlvi5lgg8mzmqsnl"; depends=[ggplot2 mclust mosaic nlme rpart treeClust]; }; splitFeas = derive2 { name="splitFeas"; version="0.1.0"; sha256="1cfiis32h5kkp8r1mndmj4xss9gw96vdzk7q68q3jhbwqiaxp9rp"; depends=[corpcor matrixStats]; }; - splitSelect = derive2 { name="splitSelect"; version="1.0.2"; sha256="0bx5b2v274i5bsfmp8ggsphzacf9gvgnravki438q3j5sx5888fz"; depends=[doParallel foreach glmnet multicool]; }; + splitSelect = derive2 { name="splitSelect"; version="1.0.3"; sha256="03gziy1hhm35hw8q2w9w6d4x2zci5q2wds0mkzihvfm0wkshi4fw"; depends=[doParallel foreach glmnet multicool]; }; splitTools = derive2 { name="splitTools"; version="0.3.1"; sha256="015vk8awxfc3zmcm3h51b6fy7si31g8w7mg4ig5fvpgsnm97h7rw"; depends=[]; }; splitfngr = derive2 { name="splitfngr"; version="0.1.2"; sha256="0cf9y68m72j890a732m0n784nr12ydljr6s8i80f0in6q8lmw8ls"; depends=[lbfgs]; }; splithalf = derive2 { name="splithalf"; version="0.7.2"; sha256="1b66dssjjs3j7wvjx12ql1iavfllh366cb5kbf5scxg882zjdi0l"; depends=[dplyr ggplot2 patchwork plyr Rcpp robustbase tidyr]; }; @@ -16618,13 +16663,14 @@ in with self; { spotGUI = derive2 { name="spotGUI"; version="0.2.3"; sha256="0hybpw0lgqrzrryfp08qvl42hrgdmx2hq7bavxjihm8mp0375dmz"; depends=[batchtools gridExtra httpuv plotly rclipboard rhandsontable shiny shinyBS shinydashboard shinyFiles shinyjs smoof SPOT XML]; }; spotidy = derive2 { name="spotidy"; version="0.1.0"; sha256="0hg8d3piiwp4q3257qsv5l41zc3c5a8mbq595ci63id8fc2q2pkd"; depends=[dplyr httr magrittr purrr]; }; spotifyr = derive2 { name="spotifyr"; version="2.2.3"; sha256="1gpi7d40rdx4dvx5699xj5zisz48arwni18sszvp8phvhgqbj0lh"; depends=[assertthat dplyr genius ggridges httr janitor jsonlite lubridate magrittr purrr readr rlang rvest stringr tibble tidyr xml2]; }; - spotoroo = derive2 { name="spotoroo"; version="0.1.1"; sha256="0xh7fxkry63fm83vfc2njjzp4r6gb5b2242ima8q75mrvjc5biax"; depends=[cli dplyr geodist ggbeeswarm ggExtra ggplot2 ggrepel patchwork progress]; }; + spotoroo = derive2 { name="spotoroo"; version="0.1.2"; sha256="04zmb0smljr0yszhd789mqm5ds3l71k5cfd9v173d04r5vv8z77a"; depends=[cli dplyr geodist ggbeeswarm ggExtra ggplot2 ggrepel patchwork progress]; }; spp = derive2 { name="spp"; version="1.16.0"; sha256="08zxxgyp0h6733b08jmml7k4rhfd3mi5dda3jrzid0s184y0z29w"; depends=[BH caTools Rcpp Rsamtools]; }; spray = derive2 { name="spray"; version="1.0-11"; sha256="0zg7rhsxbbrbvjv4azkyl9fd5kgh0a5xnkr9lnaqiss8z109jl6v"; depends=[magic mathjaxr partitions Rcpp]; }; spreadr = derive2 { name="spreadr"; version="0.2.0"; sha256="180dvr39i1glc0jllsnnglwrxh133q20v7px2fmdi7229pr175id"; depends=[assertthat extrafont ggplot2 igraph Matrix Rcpp]; }; spreval = derive2 { name="spreval"; version="1.0.0"; sha256="0949ms3d2r94vbsqyfma4vfavf0gdq58xs7nkirgrfxjd1a65vfm"; depends=[interp timeDate]; }; sprex = derive2 { name="sprex"; version="1.4.1"; sha256="14idml4mipd4wyza7hqf49ww4dparmwaps35hxm8jg5h0w1pgh7j"; depends=[swfscMisc]; }; springer = derive2 { name="springer"; version="0.1.5"; sha256="197zmn90zrqv9g0kzwnzs14g1sh3cx2hnp5x92dfp96xcb650dz1"; depends=[MASS Rcpp RcppArmadillo]; }; + springpheno = derive2 { name="springpheno"; version="0.5.0"; sha256="16pa56k1pbazv3vx5lhzc8n3pazrfh1q4bi7116bbvsdgpp9vs8g"; depends=[]; }; sprintr = derive2 { name="sprintr"; version="0.9.0"; sha256="0nnzjn7zrcgcmk3rs0hn56jcjrzrn5z0kc77bv4zzvbz5vr8gbwj"; depends=[glmnet Rcpp RcppArmadillo]; }; sprm = derive2 { name="sprm"; version="1.2.2"; sha256="0iyijkjnyz4yx2cmazlnhkk0f5ls0c2q2aikwlzl13w6zbj040a8"; depends=[cvTools ggplot2 pcaPP reshape2 robustbase]; }; sprsmdl = derive2 { name="sprsmdl"; version="0.1-0"; sha256="09klwsjp5w6p7dkn5ddmqp7m9a3zcmpr9vhcf00ynwyp1w7d26gi"; depends=[]; }; @@ -16635,7 +16681,7 @@ in with self; { spselect = derive2 { name="spselect"; version="0.0.1"; sha256="02aiml4dh40n6yl52ypramn4847ykdi4y5lhsmchnnp4nnnqycsn"; depends=[magic pracma tester]; }; spsh = derive2 { name="spsh"; version="1.1.0"; sha256="1rmsgp0mrb4153v5f5xby7r3izvgz1a0vi63g5p9q5jd6z0gd2i1"; depends=[DEoptim FME hypergeo lhs pracma Rdpack]; }; spsi = derive2 { name="spsi"; version="0.1"; sha256="0q995hdp7knic6nca0kf5yzkvv8rsskisbzpkh9pijxjmp1wnjrx"; depends=[plot3D]; }; - spsur = derive2 { name="spsur"; version="1.0.1.9"; sha256="1fadw95dadhzmq4gg0mlpvvmzgr1c62f3g78cmdfbxyv07lrvlvp"; depends=[car Formula ggplot2 gmodels gridExtra knitr lmtest MASS Matrix minqa numDeriv Rdpack rlang rmarkdown sparseMVN spatialreg spdep]; }; + spsur = derive2 { name="spsur"; version="1.0.2.0"; sha256="0dkbl5x2h1l34ybhb4zdygnf7fdga78aaq4nb9kqyw6xjfrcsazn"; depends=[car Formula ggplot2 gmodels gridExtra knitr lmtest MASS Matrix minqa numDeriv Rdpack rlang rmarkdown sparseMVN spatialreg spdep]; }; spsurv = derive2 { name="spsurv"; version="1.0.0"; sha256="11jlbzvzxv3d1d0nwpbii46ddvphglrxv25rw7pvxbybcx2i7k6x"; depends=[BH coda loo MASS Rcpp RcppEigen rstan rstantools StanHeaders survival]; }; spsurvey = derive2 { name="spsurvey"; version="5.0.1"; sha256="1ly96f7fcz4gxdxx1n71ak5vpanah2bpck3h0d2mvpyqz19ajris"; depends=[boot crossdes deldir lme4 MASS sf survey units]; }; spt = derive2 { name="spt"; version="2.5.1"; sha256="04j38d2b35p4798znnc49vqrg8r8bygwi07vybfj3nzimlp2mkrn"; depends=[]; }; @@ -16710,7 +16756,7 @@ in with self; { stabs = derive2 { name="stabs"; version="0.6-4"; sha256="1nf1yg14cgxrs4np1yghpzw1nczaslfv3rvf3918wrlzg0vp6l7q"; depends=[]; }; stackoverflow = derive2 { name="stackoverflow"; version="0.7.0"; sha256="0zv8bxzw4pgaa5ra8wsb9p7g8bwffdhc6gqsfrcs61zva7v9izc2"; depends=[]; }; stacks = derive2 { name="stacks"; version="0.2.1"; sha256="0a69fvj48npcbm0jj0506mq5m9hdprva247nyhiays6ar4ic52kv"; depends=[butcher cli dials dplyr foreach generics ggplot2 glmnet glue parsnip purrr recipes rlang rsample tibble tidyr tune workflows workflowsets yardstick]; }; - stacomirtools = derive2 { name="stacomirtools"; version="0.5.3"; sha256="00zpsfrw0gcjbjr3xdxf2wacrr1zfw6wq7a2ycq32pbh2smbkz4k"; depends=[RODBC xtable]; }; + stacomirtools = derive2 { name="stacomirtools"; version="0.6.0"; sha256="1qy9rw38qa0ng7gcnbccws8cm8175rficm5b1jn956qbkcxkz0w8"; depends=[DBI pool RODBC RPostgres xtable]; }; stagePop = derive2 { name="stagePop"; version="1.1-1"; sha256="0949r5ibl3sb10sr5xsswxap3wd824riglrylk7fx43ynsv5hzpy"; depends=[deSolve PBSddesolve]; }; stagedtrees = derive2 { name="stagedtrees"; version="2.2.0"; sha256="01qb8pw0al3b3b6smcapd61i81p6xw3hh1x8i6dsb73pdvpbfyxj"; depends=[]; }; staggered = derive2 { name="staggered"; version="1.1"; sha256="0z9358qbgn637j8iz5qwr4nyrlvi9w85l325vxpc61mcwksx5ip8"; depends=[coop dplyr magrittr MASS purrr Rcpp RcppEigen reshape2 tidyr]; }; @@ -16781,11 +16827,12 @@ in with self; { stepR = derive2 { name="stepR"; version="2.1-1"; sha256="0mz88d7214g59nvr40c4gf4grq9skjqqlfgydbdzmc4l315nr4zv"; depends=[digest lowpassFilter R_cache Rcpp]; }; stepjglm = derive2 { name="stepjglm"; version="0.0.1"; sha256="0xsb0wg7ka4ska2jkzaic7kqdzj2fkhpf5sxr3a116f2najj9ax2"; depends=[rsq]; }; stepp = derive2 { name="stepp"; version="3.2.2"; sha256="1iyj1f9gzn44xllhm9y1j0ynfz4q48d2l8ic4mjvzc3p4z8cnpmz"; depends=[car rstudioapi scales survival]; }; + steprf = derive2 { name="steprf"; version="1.0.0"; sha256="0v3bh8rc5pxwfv9dfpv4fmi816fayhjca14wz30b54d3zjvbjxqk"; depends=[psy randomForest spm spm2]; }; steps = derive2 { name="steps"; version="1.2.1"; sha256="04n5m7a5yp3karhiwgcl6fzfp85iad2xymdwp1kyqbagx2acyrka"; depends=[future future_apply memuse raster rasterVis Rcpp viridisLite]; }; - stevedata = derive2 { name="stevedata"; version="0.5.0"; sha256="1cfq1fdyv8cxk4h1r7dgbypia3ih31svw3r024bkfzw986jqvzk0"; depends=[]; }; + stevedata = derive2 { name="stevedata"; version="0.6.0"; sha256="1xhgj4g40qpj32n0n6ls5vs6ynl8ns54k1nrynd67gisdk236aq8"; depends=[]; }; stevedore = derive2 { name="stevedore"; version="0.9.4"; sha256="0qf7qid8sv3agzci7kvgh204h3p6bk60bh45zri987j2qqjjxiiy"; depends=[crayon curl jsonlite yaml]; }; stevemisc = derive2 { name="stevemisc"; version="1.3.0"; sha256="0dkmq6510r36pihj2g8c4iya5j3sbsnq9gp5i72dqj9fwsx242ca"; depends=[arm broom_mixed dplyr forcats ggplot2 httr labelled lme4 magrittr purrr rlang rmarkdown stringr tibble tidyr]; }; - stevetemplates = derive2 { name="stevetemplates"; version="0.6.0"; sha256="1xwf4c2g5n4av19xxj1vm3gv2200kqnzvxh7qzkbgs8b6s9ivly7"; depends=[rmarkdown]; }; + stevetemplates = derive2 { name="stevetemplates"; version="0.7.0"; sha256="1cbxh71c7ffxb22zs5yb33h62ipmnp2a9x2i6sdlhix6vr358705"; depends=[rmarkdown]; }; stfit = derive2 { name="stfit"; version="0.99.8"; sha256="0js09v04ik5m3d9iz9waq0yigvg2g6n75m4zm5dc0nz3yr1irb88"; depends=[abind doParallel fda foreach Matrix raster rasterVis RColorBrewer Rcpp]; }; stickr = derive2 { name="stickr"; version="0.3.1"; sha256="0krz123vz4bdcdi4p27r637pgz4rcj6kmyiqdf5x69riddvfxx8r"; depends=[base64enc fs gh stringr]; }; sticky = derive2 { name="sticky"; version="0.5.6.1"; sha256="1szfpay9cpdwq6v5fmnjyr00r4zhz6zd2rrl3h88v9l5xpfafi4w"; depends=[]; }; @@ -16803,7 +16850,7 @@ in with self; { stmgp = derive2 { name="stmgp"; version="1.0.4"; sha256="1yf0hr5gaql424ikjm9ra50vz4ppfsshhf89xphl7c9v9a6bjvw0"; depends=[MASS]; }; stmgui = derive2 { name="stmgui"; version="0.1.6"; sha256="1fn2m5l7y3p1riw39g6r3hpjxdccygih7yipp7dvc4msl9fm4h5c"; depends=[markdown shiny shinyBS shinyjs shinythemes stm tm]; }; stminsights = derive2 { name="stminsights"; version="0.4.1"; sha256="1ll2chjz9r08lya2z7dnxjqdnwrvw7jn05mpvvxi1w8s2npsggib"; depends=[dplyr ggplot2 ggraph ggrepel huge igraph purrr readr scales shiny shinyBS shinydashboard shinyjs stm stringr tibble tidygraph]; }; - stoRy = derive2 { name="stoRy"; version="0.1.5"; sha256="1ccx5xpjx4f6y4afay7zk195891xx2z6z2a11xqx5qg8rf0fv9jm"; depends=[data_tree R6]; }; + stoRy = derive2 { name="stoRy"; version="0.2.0"; sha256="1mxnnmg6wqp40hyh2mjd39vpzks78rr59pdlyxljlpnlslgkf1md"; depends=[cli crayon dplyr fansi httr lifecycle purrr R6 rappdirs readr rlang stringr tibble tidyjson tidyr]; }; stocc = derive2 { name="stocc"; version="1.31"; sha256="0d0n9nrcva0vradippq30y6dc6klwd1mllnzpnzq9rczpz5cw7mw"; depends=[coda fields Matrix rARPACK truncnorm]; }; stochQN = derive2 { name="stochQN"; version="0.1.2-1"; sha256="1lfzivl745dj94kap103arz0zy75wk69kc6v84xaaxk7ad3icnaj"; depends=[]; }; stochprofML = derive2 { name="stochprofML"; version="2.0.3"; sha256="0j6m2byh7w9kcbp3mfvmg6fm6z0dq8k4qabj1yfkl0d1y2ifd1zd"; depends=[MASS numDeriv]; }; @@ -16948,6 +16995,7 @@ in with self; { survSNP = derive2 { name="survSNP"; version="0.25"; sha256="0awj4vh7sdal873bkp7f0ff4r87idgdn5cby405flvivlxv83i9z"; depends=[foreach lattice Rcpp survival xtable]; }; survSens = derive2 { name="survSens"; version="0.1.0"; sha256="1s4s5l31yps93s2zdxpidkdg8kmmwj6vb3zfndmnxvc07arwhvbv"; depends=[directlabels ggplot2 survival]; }; survSpearman = derive2 { name="survSpearman"; version="1.0.0"; sha256="06xric3fwv2rdrbapsawrg288s2sflzrbx1a4yc7lzxzxbsbs619"; depends=[]; }; + surveil = derive2 { name="surveil"; version="0.1.0"; sha256="1mscqz25scpvl1a387883yvbjs4qlk12idasb5zv76rqfgspsdrz"; depends=[BH dplyr ggdist ggplot2 gridExtra Rcpp RcppEigen RcppParallel rlang rstan rstantools scales StanHeaders tidybayes tidyr]; }; surveillance = derive2 { name="surveillance"; version="1.19.1"; sha256="1665n26qs79b3hj4wdp13qjr13w6g32jvbpc4qpcn39bgql6i599"; depends=[MASS Matrix nlme polyCub Rcpp sp spatstat spatstat_geom xtable]; }; survexp_fr = derive2 { name="survexp.fr"; version="1.0"; sha256="12rjpnih0xld4dg5gl7gwxdxmrdmyzsymm7j05v98ynldd1jkjl8"; depends=[survival]; }; survey = derive2 { name="survey"; version="4.1-1"; sha256="0ljsszybzri531q6xab04r6zq11vchfs7y0snjzk57m3g0b9ms05"; depends=[lattice Matrix minqa mitools numDeriv survival]; }; @@ -16971,7 +17019,7 @@ in with self; { survsim = derive2 { name="survsim"; version="1.1.7"; sha256="1873m3lhrmy36fbg3rdnkvqmgyxbf07vb3p54p8xnggyllf94q5b"; depends=[eha statmod]; }; survtmle = derive2 { name="survtmle"; version="1.1.1"; sha256="1l13rvwq4915ij2a55fxdj3b3wkgjca1fbqzcgkjlpzkcn97k1nj"; depends=[dplyr ggplot2 ggsci Matrix plyr speedglm stringr SuperLearner tidyr]; }; survxai = derive2 { name="survxai"; version="0.2.2"; sha256="09ig561754kjzpay2hy3n62zlk0bgwkjy8vnslrr428r8m1lj0qr"; depends=[breakDown ggplot2 pec prodlim scales survival survminer]; }; - susieR = derive2 { name="susieR"; version="0.11.42"; sha256="1x5rk0yi7232bmdkq17sv5gwk7w8mhs15mmix5n7zc3d0al1p7yh"; depends=[ggplot2 Matrix mixsqp reshape]; }; + susieR = derive2 { name="susieR"; version="0.11.92"; sha256="1wlw41vslbgf6dmppn2hv2mqrnnza5091qzjl0qjaydsp97h5b3b"; depends=[crayon ggplot2 Matrix matrixStats mixsqp reshape]; }; sutteForecastR = derive2 { name="sutteForecastR"; version="0.1"; sha256="13dd0v3l3s7xb1wnpf6qvnvclzab87831z8bsxsq53vpb26xcw1b"; depends=[forecast forecastHybrid fracdiff robets]; }; svDialogs = derive2 { name="svDialogs"; version="1.0.3"; sha256="0j00xjvkwv992ir48czhvyj29rb9vpd243vbyyj2binn0q0qa431"; depends=[rstudioapi svGUI]; }; svDialogstcltk = derive2 { name="svDialogstcltk"; version="0.9-4"; sha256="16166f8i6nsg7palqmnlp5b9s91d6ja9n0zm6rcvd2fwnw2ljkr4"; depends=[svDialogs svGUI]; }; @@ -17173,13 +17221,13 @@ in with self; { tensorBF = derive2 { name="tensorBF"; version="1.0.2"; sha256="1dw1a6xqcsl4isbzbfiplgqq5nak5n9ffzm23mzzmkh1r1a8kl1y"; depends=[tensor]; }; tensorBSS = derive2 { name="tensorBSS"; version="0.3.8"; sha256="1chgkdshjpxzy0cxkgjzpr5k4v2hyad1vchrxyqhsj9isfic2581"; depends=[abind fICA ggplot2 ICtest JADE Rcpp RcppArmadillo tensor tsBSS]; }; tensorTS = derive2 { name="tensorTS"; version="0.1.2"; sha256="0hwskjw611vlrd3q6yypgk6g8p704yih6m9869hjyn3x0rf2kw7n"; depends=[abind expm MASS Matrix pracma rTensor tensor]; }; - tensorflow = derive2 { name="tensorflow"; version="2.6.0"; sha256="1lkzxc3b5gkcg4hwqr57cysplcba6ff44qz8lbvk19kxnrhjaf9g"; depends=[config processx reticulate rstudioapi tfautograph tfruns yaml]; }; + tensorflow = derive2 { name="tensorflow"; version="2.7.0"; sha256="0xgm8jb1hl8564vviqys3aqwzvfbh0d43m154cj07j9spdz306ng"; depends=[config processx reticulate rstudioapi tfautograph tfruns yaml]; }; tensorr = derive2 { name="tensorr"; version="0.1.1"; sha256="18xdvp328h96jn8y1iayxh7cyz2s8j5nn43nq18pyaxq271hkfyh"; depends=[assertive_base assertive_properties assertive_types Matrix purrr]; }; tensorregress = derive2 { name="tensorregress"; version="4.0"; sha256="0pb512v3gahgv3qc31i5v2jg8wixi6ps3p920sq5dgpfrig9hg2q"; depends=[MASS pracma speedglm]; }; tensorsparse = derive2 { name="tensorsparse"; version="3.0"; sha256="0xx003nh5bi87cbsqb7ikpcs4yhjhphh7pybzzas44qkwbn4fn1k"; depends=[]; }; tensr = derive2 { name="tensr"; version="1.0.1"; sha256="1z6b3ra7fgn88mxbhsq65x3frj5j7p17n119s9kbw7sg9y633vfx"; depends=[assertthat]; }; tergm = derive2 { name="tergm"; version="4.0.2"; sha256="0r1afidhfwmfkihcmry37j9imq26b55m84nxgv3r03y9cq8xdcas"; depends=[coda ergm MASS network networkDynamic nlme purrr robustbase statnet_common]; }; - tergmLite = derive2 { name="tergmLite"; version="2.5.0"; sha256="17qs02lh3if4s6ims5scig0bwykb6cvb4a87k6iz24ccb18gahlc"; depends=[ergm network Rcpp statnet_common tergm tibble]; }; + tergmLite = derive2 { name="tergmLite"; version="2.5.5"; sha256="0sg19ppvmy1wfqbvchn98maxiqzaa67yz64g4mhyxviksh1yzwxd"; depends=[ergm network networkDynamic Rcpp statnet_common tergm tibble]; }; term = derive2 { name="term"; version="0.3.3"; sha256="04zl9hb3kgji5y3lq7d1pa4fh7mr0kxxjx1pmyj3dla8mqjxv22r"; depends=[chk extras lifecycle purrr rlang universals vctrs]; }; ternvis = derive2 { name="ternvis"; version="1.2"; sha256="057i6i3ygxrin0npc18gsg3dpdldzafyb5sr6lix5mhy6b09lkxf"; depends=[dichromat maps quadprog]; }; terra = derive2 { name="terra"; version="1.4-11"; sha256="08gx28ad00adz4fqch3fx27s6yd0rpjhmdy6b83d1wnlzzgc13qa"; depends=[Rcpp]; }; @@ -17191,6 +17239,7 @@ in with self; { testarguments = derive2 { name="testarguments"; version="0.0.1"; sha256="1x77z0pljfi6z4bs6db3zsjbpyypsd3jbd0ykh4pq07595phh8x5"; depends=[dplyr ggplot2 magrittr plyr reshape2]; }; testassay = derive2 { name="testassay"; version="0.1.1"; sha256="1gc35s5an0cpvadwx4bswy5lzcp01az3gnkjhvph6sm3pi3xjxm7"; depends=[]; }; testcorr = derive2 { name="testcorr"; version="0.2.0"; sha256="0bqhf4p4csyd430240d8gh09axpz3h108fh78sbgpyqdhiq3d1fh"; depends=[forcats ggplot2 knitr reshape2 scales]; }; + testdat = derive2 { name="testdat"; version="0.3.0"; sha256="1kpzhqpqfxkmn0xrb7w0zk7vanm7daxhr3qpnsj3s23mkhrx333k"; depends=[dplyr glue lifecycle rlang stringr testthat tidyselect]; }; testequavar = derive2 { name="testequavar"; version="0.1.2"; sha256="12qfy53rkrasxphcfmch5bmdlvlybd27jfg3azsi3fg4zk4qgdw2"; depends=[]; }; tester = derive2 { name="tester"; version="0.1.7"; sha256="1x5m43abk3x3fvb2yrb1xwa7rb4jxl8wjrnkyd899ii1kh8lbimr"; depends=[]; }; testforDEP = derive2 { name="testforDEP"; version="0.2.0"; sha256="1mgzhj8b35r5cm4bl0nnyxj0h7rwd28d17qvgvaky2kvm2r83cf9"; depends=[Hmisc minerva Rcpp]; }; @@ -17205,6 +17254,7 @@ in with self; { text = derive2 { name="text"; version="0.9.10"; sha256="1ramsv2pbg57yyxp5qjkls82gl5icda6f5116hr0w5s0w3jpajmj"; depends=[cowplot dplyr furrr future ggplot2 ggrepel magrittr parsnip purrr recipes reticulate rlang rsample stringr tibble tidyr tokenizers tune workflows yardstick]; }; text_alignment = derive2 { name="text.alignment"; version="0.1.2"; sha256="0qjnzdm7savn2jqmm23cd3rszyihnhb5rfnygc36ccfd15vav79j"; depends=[Rcpp]; }; text2map = derive2 { name="text2map"; version="0.1.1"; sha256="1kwbb9bp3ikksh24i69gclmanyqri3xn7rdbf1x93lhj7fxzbxrs"; depends=[doParallel dplyr fastmatch foreach igraph kit magrittr Matrix mlpack qgraph rlang stringi stringr text2vec tibble]; }; + text2sdg = derive2 { name="text2sdg"; version="0.1.1"; sha256="1l7v8jn8pj5r9n60im7ihj9xnb7m02ay2qxichg9ssv47h8sl9fl"; depends=[corpustools dplyr ggplot2 magrittr stringr tibble tidyr]; }; text2speech = derive2 { name="text2speech"; version="0.2.13"; sha256="0c0h4yfp1gzaf4snav84iy5m0fx8az0pw1h2s33239dxkwcff893"; depends=[aws_signature dplyr googleAuthR googleLanguageR httr knitr magrittr mscstts tuneR]; }; text2vec = derive2 { name="text2vec"; version="0.6"; sha256="0r75cv77x2zm1z66s95hic71dpbqmybz39n48q6mz7gfd3m7312y"; depends=[data_table digest lgr Matrix mlapi R6 Rcpp rsparse stringi]; }; textTinyR = derive2 { name="textTinyR"; version="1.1.7"; sha256="17c3vciqx2i0h0jkqsiva8kp6pwcrscwgyxf804sjvdbym0pwc7d"; depends=[BH data_table Matrix R6 Rcpp RcppArmadillo]; }; @@ -17234,7 +17284,7 @@ in with self; { tfaddons = derive2 { name="tfaddons"; version="0.10.0"; sha256="16adig97qmafval6i29pqdinsgbwjz2isajxdx1xvbf1mrawkmz0"; depends=[keras purrr reticulate rstudioapi tensorflow]; }; tfarima = derive2 { name="tfarima"; version="0.2.1"; sha256="1n7bdhcn6cvz7ly9b3jgxyw2nan0ixzj1m9d316yalmbkqh1md62"; depends=[numDeriv Rcpp RcppArmadillo zoo]; }; tfautograph = derive2 { name="tfautograph"; version="0.3.2"; sha256="0fmaq1ggjyxgf2ss7qb8jk74sfwc3s1vc123pd5glclxcy1ib0j2"; depends=[backports reticulate]; }; - tfdatasets = derive2 { name="tfdatasets"; version="2.6.0"; sha256="06sjcbrv4msl66kjjq30557x8pikcqp8350k9f77ilxgcq2nhqqb"; depends=[generics magrittr reticulate rlang tensorflow tidyselect vctrs]; }; + tfdatasets = derive2 { name="tfdatasets"; version="2.7.0"; sha256="1yzh13mc1mwz464raa0q9gj6s4mv87g7mdla73scr5x009wqjpln"; depends=[generics magrittr reticulate rlang tensorflow tidyselect vctrs]; }; tfdeploy = derive2 { name="tfdeploy"; version="0.6.1"; sha256="1vbxyvmzaafbwp1pmvzn16zyl4nz85787m79gn7iazh9zw9f7j34"; depends=[httpuv httr jsonlite magrittr reticulate swagger tensorflow]; }; tfer = derive2 { name="tfer"; version="1.3"; sha256="1a5i9jccj39n61ixx8q2qq9ismr43jybp0vlvy6jda99r92zdhhl"; depends=[]; }; tfestimators = derive2 { name="tfestimators"; version="1.9.2"; sha256="1gwj2xal5an0m9c2x1rxzsg07hgzjyxr4m08sd3salgyc2h3bi5g"; depends=[forge magrittr progress purrr reticulate rlang tensorflow tfruns tibble tidyr tidyselect]; }; @@ -17253,7 +17303,6 @@ in with self; { tgram = derive2 { name="tgram"; version="0.2-3"; sha256="0vlnry8drq3fqfy8dk50pcwcx9dj657kx6s19fs2b6acigkr4g7w"; depends=[zoo]; }; tgstat = derive2 { name="tgstat"; version="2.3.16"; sha256="12apvcpdwfng0sp2v80xvpk7ynbadi2lvbfk14hlcsvw8h3rb268"; depends=[]; }; thankr = derive2 { name="thankr"; version="1.0.0"; sha256="089ikp85d5ia6a1qzmw8dkgcmz628cibmwfzcpk7m3ii8acxq91w"; depends=[]; }; - thectar = derive2 { name="thectar"; version="1.0.0"; sha256="1qh0qzg0ybb38kzm56xxlvhm201pdjm16aky5f1fdflcsszgy8mx"; depends=[proxy smacof]; }; theiaR = derive2 { name="theiaR"; version="0.4.0"; sha256="07m532r67cil2ya2w9lfhycrm8n0ga0r3x7jwbp5jbd83hw4l1p6"; depends=[askpass httr R6 raster XML]; }; thematic = derive2 { name="thematic"; version="0.1.2.1"; sha256="1hr9373256n1rya3l2z2sqwfifypsh6wrs2s27aqchh9sm0blkmy"; depends=[farver ggplot2 rappdirs rlang rstudioapi scales]; }; themetagenomics = derive2 { name="themetagenomics"; version="1.0.2"; sha256="14i81cd9cyzhi3j2d9ygwlairkimhx8ffvva3pg3xwwvpywb6mla"; depends=[ggplot2 lda lme4 Matrix plotly Rcpp rstan scales shiny stm]; }; @@ -17277,7 +17326,7 @@ in with self; { thriftr = derive2 { name="thriftr"; version="1.1.5"; sha256="1s8fn0imja6gh5bb0h2g1pmvkwk5v0dmpml9yvcd5dhz9lxy6vdj"; depends=[R6 rly stringi]; }; thsls = derive2 { name="thsls"; version="0.1"; sha256="18z7apskydkg7iqrs2hgnzby578qsvyd73wx8v4z3aa338lssdi7"; depends=[Formula]; }; thurstonianIRT = derive2 { name="thurstonianIRT"; version="0.12.1"; sha256="1qac1kg441x6fx3nxlhj1w1q7b3isivw6hzy7np3g1ics3kxpw8b"; depends=[BH dplyr knitr lavaan magrittr MplusAutomation mvtnorm Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders tibble tidyr]; }; - tibble = derive2 { name="tibble"; version="3.1.5"; sha256="1ryv1r3cah1s8dyqdhcb0yl81r384jvgc4d1q9zwsrrsd2x8fqys"; depends=[ellipsis fansi lifecycle magrittr pillar pkgconfig rlang vctrs]; }; + tibble = derive2 { name="tibble"; version="3.1.6"; sha256="14l2i6ri3v5y0h8g0ahc4kz0pdqsp5yabxk2w8wavss6y44xjcsv"; depends=[ellipsis fansi lifecycle magrittr pillar pkgconfig rlang vctrs]; }; tibbletime = derive2 { name="tibbletime"; version="0.1.6"; sha256="0pfph4pyjxkxrir5ca1sh7xz07dylqnq40w0qyqiyaj5s23mbbmb"; depends=[assertthat dplyr glue hms lifecycle lubridate purrr Rcpp rlang tibble tidyselect vctrs zoo]; }; tibblify = derive2 { name="tibblify"; version="0.1.0"; sha256="0mdi9x36nrlcbchl7b2rlf4j1k0y6c7657aznm7xa0396ciij5fk"; depends=[crayon purrr rlang tibble vctrs]; }; tictactoe = derive2 { name="tictactoe"; version="0.2.2"; sha256="1fx8plj5zr04xwk5hfj3zqhcknidxlzya2q14cf0m3y33a86lx42"; depends=[hash]; }; @@ -17313,6 +17362,7 @@ in with self; { tidygraph = derive2 { name="tidygraph"; version="1.2.0"; sha256="17qjns33zcj82jcsl7bn7i4zxcm7ric50zyf7agi0i01zi16qz85"; depends=[dplyr igraph magrittr pillar R6 Rcpp rlang tibble tidyr]; }; tidyhydat = derive2 { name="tidyhydat"; version="0.5.4"; sha256="0pkh6pd8rvjlang5zf15c2ca465shi46ks3mbzyymdy5sdj63hdf"; depends=[cli crayon DBI dbplyr dplyr httr lubridate rappdirs readr rlang RSQLite tidyr]; }; tidyjson = derive2 { name="tidyjson"; version="0.3.1"; sha256="1rx5ncp20j9mhcziyqb0vgfq9061qylgvfwz27dsyz58r8fygwnq"; depends=[assertthat dplyr jsonlite magrittr purrr rlang tibble tidyr]; }; + tidylab = derive2 { name="tidylab"; version="4.1.1"; sha256="052wgx4dfbr806b9r0cfblkwaf1qnrlf5ngm1c029ggss3br7ki4"; depends=[cli crayon decorators dplyr microservices purrr rstudioapi tibble usethat]; }; tidylda = derive2 { name="tidylda"; version="0.0.1"; sha256="1w53zjz0ckn2qhgichak54j2i4anbhcb8mdg37f0kqiygavxdkmx"; depends=[dplyr generics gtools Matrix mvrsquared Rcpp RcppArmadillo RcppProgress RcppThread rlang stringr textmineR tibble tidyr tidytext]; }; tidylo = derive2 { name="tidylo"; version="0.1.0"; sha256="135aw7zqgxz7l3zgskhzy72lgm1xwl50566s0s45dq7h6ah0vi5d"; depends=[dplyr rlang]; }; tidylog = derive2 { name="tidylog"; version="1.0.2"; sha256="076am30ayc16wm3bilznxqzd5806yi7dx5m9yv4w7q90i7imsqk7"; depends=[clisymbols dplyr glue tidyr]; }; @@ -17342,7 +17392,7 @@ in with self; { tidytidbits = derive2 { name="tidytidbits"; version="0.2.3"; sha256="1sia4bxfnb0hw047l6hl013si3iaisac51lp9b42m22hcxzxwgx0"; depends=[dplyr extrafont forcats magrittr purrr rlang stringr tibble tidyr tidyselect]; }; tidytransit = derive2 { name="tidytransit"; version="1.1.0"; sha256="0z4xiz8afvsqcc4x7ac1p6y60lwx5yr1s78mi7a0c322lc80yfln"; depends=[checkmate data_table digest dplyr geodist gtfsio hms httr lubridate readr rlang sf tibble tidyr zip]; }; tidytreatment = derive2 { name="tidytreatment"; version="0.2.1"; sha256="09d9qiwb1mniwfyklkiylr1glix1f441kkxlbff2x99j1xij197x"; depends=[dplyr purrr readr rlang tidybayes tidyr]; }; - tidytree = derive2 { name="tidytree"; version="0.3.5"; sha256="0zk46n3nh577k2jy34isdw845hk0blkvqk7rg5nmix5b65qsp762"; depends=[ape dplyr lazyeval magrittr rlang tibble tidyr tidyselect]; }; + tidytree = derive2 { name="tidytree"; version="0.3.6"; sha256="1gnpm4zz0kvqng5s179301q0h5993ajynm8y0zbdz38qcmzfpsdk"; depends=[ape dplyr lazyeval magrittr rlang tibble tidyr tidyselect yulab_utils]; }; tidytuesdayR = derive2 { name="tidytuesdayR"; version="1.0.1"; sha256="0slpfajv5cxqxfb1sh98574zrcgihiazscpr0zga2i6kiwn3kgpy"; depends=[httr jsonlite lubridate magrittr purrr readr readxl rstudioapi rvest usethis xml2]; }; tidyverse = derive2 { name="tidyverse"; version="1.3.1"; sha256="0ck6xmsw5p168jmw2fqv79fzfnw5jckfra7mfii261j6kl89bkw3"; depends=[broom cli crayon dbplyr dplyr dtplyr forcats ggplot2 googledrive googlesheets4 haven hms httr jsonlite lubridate magrittr modelr pillar purrr readr readxl reprex rlang rstudioapi rvest stringr tibble tidyr xml2]; }; tidyvpc = derive2 { name="tidyvpc"; version="1.2.0"; sha256="1xih8gdc44ddi5kqx8kq9i3pz21hddha87fpb58wjfr5hsaw18sy"; depends=[classInt data_table fastDummies ggplot2 magrittr mgcv quantreg rlang]; }; @@ -17389,7 +17439,7 @@ in with self; { tint = derive2 { name="tint"; version="0.1.3"; sha256="00830n5nl6p73v9w0yzsak56phz4w1fh5lhf1c42gg1i81x7swnx"; depends=[htmltools knitr rmarkdown]; }; tinter = derive2 { name="tinter"; version="0.1.0"; sha256="02hfw2720qn70x0piahm8cy2ajsb5bqapr4vyvknm4v1yka1wmw3"; depends=[chk]; }; tinyProject = derive2 { name="tinyProject"; version="0.6.1"; sha256="0cflnfp5mib3j1y3n5yvi867h5a7z6xr6163gq9y9b6nrl2skxfk"; depends=[brew R_utils]; }; - tinyarray = derive2 { name="tinyarray"; version="2.2.6"; sha256="0k99i0k1l5bjh08pgsxcanq74zw7hraawc679km6bblhh7yag2az"; depends=[BiocManager clusterProfiler dplyr ggplot2 limma org_Hs_eg_db patchwork pheatmap stringr survival survminer tibble]; }; + tinyarray = derive2 { name="tinyarray"; version="2.2.7"; sha256="0nhsmgg126x2rfk82d91c8rk74sg7qbshy10vcbqdgcmlz6466mh"; depends=[BiocManager clusterProfiler dplyr ggplot2 limma org_Hs_eg_db patchwork pheatmap stringr survival survminer tibble]; }; tinylabels = derive2 { name="tinylabels"; version="0.2.1"; sha256="1gvj8l6lvhjxx6fpk825jdgwq34ikm4wmjicyn486spxjc81bw85"; depends=[]; }; tinyscholar = derive2 { name="tinyscholar"; version="0.1.4"; sha256="0lj5ax3m5kr18qf9xmrh6iyy00bp59wwi3ss96ynsyiajmndsajf"; depends=[curl dplyr ggplot2 gt jsonlite magrittr purrr R_utils rlang rvest stringr xml2]; }; tinyspotifyr = derive2 { name="tinyspotifyr"; version="0.2.2"; sha256="19nicp1ml73lylja2np52rcc070maxm9286fjm7bfx3zsblxmakc"; depends=[httr jsonlite]; }; @@ -17449,6 +17499,7 @@ in with self; { tools4uplift = derive2 { name="tools4uplift"; version="1.0.0"; sha256="1izm9q2bj9l2nd9jn0fi3lf9hscfa0vmib58ypgpjsbsn0nd7p2h"; depends=[BiasedUrn dplyr glmnet latticeExtra lhs]; }; topicdoc = derive2 { name="topicdoc"; version="0.1.0"; sha256="0qliy6y8l09nblch1swlywam2awzwjl5xx0w8c3kiz48jxfysw0j"; depends=[slam topicmodels]; }; topicmodels = derive2 { name="topicmodels"; version="0.2-12"; sha256="1d6iizmn042b59q2y6qc82z19wq3xm0zvgkf8iqf8fdzh51kmn5g"; depends=[modeltools slam tm]; }; + topicmodels_etm = derive2 { name="topicmodels.etm"; version="0.1.0"; sha256="06w2n1gswv268sgzm0nz14mmrahibnsgcxh7hcks3bmq9r8d9ba4"; depends=[Matrix torch]; }; topmodel = derive2 { name="topmodel"; version="0.7.3"; sha256="15w9id90d6l0i0ji3ln3sxnpispb6pgabk4waysqn0nh6y4lfdgb"; depends=[]; }; topoDistance = derive2 { name="topoDistance"; version="1.0.1"; sha256="055z3gvqlb8nyy58ix89w7miav9gj3h43a4wcfc3kagd97xc3222"; depends=[gdistance igraph plotly raster RColorBrewer scales sp]; }; topologyGSA = derive2 { name="topologyGSA"; version="1.4.7"; sha256="073n8bkrapk6il3izqr3bmcdp7yc29yzpbyzh6fvy9rg0x4d3g0z"; depends=[fields graph gRbase qpgraph]; }; @@ -17713,7 +17764,7 @@ in with self; { udapi = derive2 { name="udapi"; version="0.1.3"; sha256="0qyn6fdh8ia913hn2dl0x99xsm20ps8zm52snswlyb00prinm668"; depends=[curl httr]; }; udpipe = derive2 { name="udpipe"; version="0.8.6"; sha256="1jqx9nbxl61k6s20rjkyghkv6lq1dzf63a9gljaxmv30hwgmgrvk"; depends=[data_table Matrix Rcpp]; }; udunits2 = derive2 { name="udunits2"; version="0.13.1"; sha256="1l889f8iy8qaacxfs6ll62d6hs8g8qsr5ynn24grpvp8dk8l888w"; depends=[]; }; - ufs = derive2 { name="ufs"; version="0.4.3"; sha256="0gbmy7viwn55cj6z44aals02bvci0g6y2ya6x7fvjz3s4v3digd1"; depends=[digest diptest dplyr ggplot2 ggrepel ggridges gridExtra gtable htmltools kableExtra knitr pander plyr rmdpartials scales SuppDists]; }; + ufs = derive2 { name="ufs"; version="0.5.2"; sha256="1lqnib0pizx97isqbr4v2r4qp7fph6znbd5arbjnxmlh2wblfbsl"; depends=[digest diptest dplyr ggplot2 ggrepel ggridges gridExtra gtable htmltools kableExtra knitr pander plyr pwr rmdpartials scales SuppDists]; }; ugatsdb = derive2 { name="ugatsdb"; version="0.2.1"; sha256="1r4h01x9a1rhvkrqa61n0a71q5xpyf26xzdf2i99l9vif6pg8rfv"; depends=[collapse data_table DBI RMySQL writexl]; }; ugomquantreg = derive2 { name="ugomquantreg"; version="1.0.0"; sha256="1a5vc1qgy3kp1by5bp296w980lkxcghzzxibhap2jg06jnzjfcq8"; depends=[gamlss gamlss_dist pracma Rcpp]; }; ui = derive2 { name="ui"; version="0.1.1"; sha256="15hcdzaj75ip6j7yglx8rqhp4y3yf3aw5cpbjgk1mjr4cya7lvzi"; depends=[Matrix maxLik mvtnorm numDeriv]; }; @@ -17946,7 +17997,7 @@ in with self; { visTree = derive2 { name="visTree"; version="0.8.1"; sha256="1l07zfr2hagjpdxfw5290wa3ki4bl7iqxrrhda0d1bp3wmwfz0ai"; depends=[colorspace partykit rpart]; }; visa = derive2 { name="visa"; version="0.1.0"; sha256="1mx7nbbpxs4fdp781a75qvffa42dx2n6anslbfs9bnprmvzmljqr"; depends=[ggplot2 ggpmisc Matrix RColorBrewer reshape2]; }; visachartR = derive2 { name="visachartR"; version="1.1.1"; sha256="1qj0ma9dai1q1khwh0cckhi0r6jqbpm2qr6fhlv2skz19s2hvzjs"; depends=[htmlwidgets]; }; - visae = derive2 { name="visae"; version="0.1.0"; sha256="06qrb7q5qwcmmp258psfxzxhmxy2j53gcz09gngspv0fwh92h7z8"; depends=[ca dplyr DT ggplot2 ggrepel magrittr rlang shiny shinyjs tidyr]; }; + visae = derive2 { name="visae"; version="0.2.0"; sha256="0ycwb380z8nb646w7w42952lwvdi8prmph7yv1lraswvp4wjfx3p"; depends=[ca dplyr DT ggplot2 ggrepel magrittr rlang shiny shinyjs tidyr]; }; viscomplexr = derive2 { name="viscomplexr"; version="1.1.1"; sha256="1b45yi5xv4vq52pfa064ll3ghxgkwpbknzq94gg60vcvb7spd0if"; depends=[doParallel foreach plotrix Rcpp Rdpack scales]; }; visdat = derive2 { name="visdat"; version="0.5.3"; sha256="1ikqp29nncbw1xlwyb9dqqgcdk9q0bs3wxhnhnjpb11vcjv7cz2j"; depends=[dplyr ggplot2 glue magrittr purrr readr tibble tidyr]; }; visit = derive2 { name="visit"; version="2.1"; sha256="0kkspih7m18g5pqlwrxpgjdwqxpp23c3xyvcnvv247abl9aq81rd"; depends=[BH Rcpp RcppEigen rstan sqldf StanHeaders]; }; @@ -17968,6 +18019,7 @@ in with self; { vlad = derive2 { name="vlad"; version="0.2.2"; sha256="0c3zfjm5nj7iisfnl822sk8wdszv6hcsaf51sn7aqnlp579hq2jk"; depends=[BH checkmate dplyr magrittr Rcpp RcppArmadillo tidyr]; }; vlda = derive2 { name="vlda"; version="1.1.5"; sha256="17xn8qqh043dm05ib3h4l1qx07wxncf5d06x9l1wl6jbkvnsm2nq"; depends=[dplyr ggiraph ggplot2 ggrepel ggsci]; }; vmd = derive2 { name="vmd"; version="0.1.0"; sha256="17c06a9l6i90ivpvf3rgv6yrsqv36qmywmmy92y5b81zqhgmh907"; depends=[ggplot2 magrittr R6 Rcpp reshape2 scales]; }; + vmeasur = derive2 { name="vmeasur"; version="0.1.4"; sha256="17rqr8zpfnq3f0d3yi9w09wvrbq79g4w7rkqf4l2wyd8ic5npwb0"; depends=[av crayon doFuture dplyr foreach future ggplot2 ggpubr imager magrittr pdftools pracma progressr purrr readr rlang scales stringr svDialogs tidyr]; }; vmr = derive2 { name="vmr"; version="0.0.3"; sha256="1qxcbmf71xwlmi5wyjs3a86ywjd0cj6f86kyq5bpw4ykn797kciw"; depends=[curl jsonlite]; }; vntrs = derive2 { name="vntrs"; version="0.1.0"; sha256="0ffjjzcs7i4zli7bn83gkgi0q7dmgyxrhv9l3gdambma9hsig45c"; depends=[trust]; }; vocaldia = derive2 { name="vocaldia"; version="0.8.3"; sha256="1r28f2bwkkxjjv3qysdvp5v9gjrd4rz8l1zqd80qjnj552viy86z"; depends=[]; }; @@ -17993,12 +18045,12 @@ in with self; { vrcp = derive2 { name="vrcp"; version="0.1.1"; sha256="1wrch1dqy752gkj24h1dgi2x3kf1797xj4pf1s9mszf3x3ic905d"; depends=[ggplot2]; }; vrmlgen = derive2 { name="vrmlgen"; version="1.4.9"; sha256="0lifhhf41yml4k83wpkssl14jgn8jaw1lcknwbci1sd8s1c4478l"; depends=[]; }; vrnmf = derive2 { name="vrnmf"; version="1.0.0"; sha256="1mcmpv30z9zzaq2r7h7r8pgf3fgwv3bx61b9a17a5wv39smnj0x2"; depends=[ica lpSolveAPI nnls quadprog]; }; - vroom = derive2 { name="vroom"; version="1.5.5"; sha256="1zk5nk9y64lspwhsasb7d2yg8i6ihyg2slys1qqa6qpi1266hi8x"; depends=[bit64 cli cpp11 crayon glue hms lifecycle progress rlang tibble tidyselect tzdb vctrs withr]; }; + vroom = derive2 { name="vroom"; version="1.5.6"; sha256="0b1lbi20gadwjwinw1v0az4g0y79vlcqfqyblphls601h3nnmn3p"; depends=[bit64 cli cpp11 crayon glue hms lifecycle progress rlang tibble tidyselect tzdb vctrs withr]; }; vrtest = derive2 { name="vrtest"; version="0.97"; sha256="00hdgb0r18nwv3qay97b09kqqw9xqsbya06rrjyddqh9r6ggx1y0"; depends=[]; }; vscc = derive2 { name="vscc"; version="0.2"; sha256="1p14v8vd8kckd44g4dvzh51gdkd8jvsc4bkd2i4csx8vjiwrni5w"; depends=[mclust teigen]; }; vsd = derive2 { name="vsd"; version="0.1.0"; sha256="18whnvary4glblzx1vxf3yzsllnnnbnyijwhbw7bi3agppnwrf22"; depends=[dplyr flexsurv ggplot2 ggpubr magrittr muhaz survival survminer]; }; vsgoftest = derive2 { name="vsgoftest"; version="1.0-1"; sha256="0vypi4cf04bljmx3jwq3ixs86ivd6p7a825ik189y71fyqg9g70v"; depends=[fitdistrplus Rcpp]; }; - vstsr = derive2 { name="vstsr"; version="1.0.0"; sha256="0flsw5yw1vmj5x866klxmjqz5aimkvjiwl1zdciz63p9zffmb4gz"; depends=[httr jsonlite magrittr R6 RCurl xml2]; }; + vstsr = derive2 { name="vstsr"; version="1.1.0"; sha256="071nfxkwwpbp2d8khxq7d1pp268pa1fcfj619bs6xwg4wk9srr3k"; depends=[httr jsonlite R6 RCurl]; }; vtable = derive2 { name="vtable"; version="1.3.3"; sha256="1a1rw5n3j2ylhg0sjbdszkw5l9971s7lih9shmyhpikx79j4qgm5"; depends=[haven kableExtra knitr rstudioapi sjlabelled]; }; vtreat = derive2 { name="vtreat"; version="1.6.3"; sha256="181nsjl811m3k1123bvgnnwr253sc2mbj4ljzmawz9wl7dfbwfij"; depends=[digest wrapr]; }; vtree = derive2 { name="vtree"; version="5.4.6"; sha256="03n79xn4wr4hqrj571781igd07dw0sxfi6cnvmhmshc0brzkz7s9"; depends=[DiagrammeR DiagrammeRsvg htmlwidgets rsvg shiny]; }; @@ -18035,7 +18087,7 @@ in with self; { warpMix = derive2 { name="warpMix"; version="0.1.0"; sha256="13zbl4aifhg7j5b3vpwgzgs09hr7yblz0rckmj5qh40s78j8cpfn"; depends=[fda fields lme4 MASS nlme reshape2]; }; washdata = derive2 { name="washdata"; version="0.1.3"; sha256="0m7rwwi189sbsv3144x14jqmfax30f6ri1pisy47yggmmjpdplps"; depends=[]; }; washeR = derive2 { name="washeR"; version="0.1.2"; sha256="0sb5sgwf7y9sd291qfj1az3x6h6gmznnnsdmqizkmv2xz9029rxz"; depends=[gplots]; }; - washex = derive2 { name="washex"; version="1.0.0"; sha256="0di55jhrrhdjgmg60z8bzrp4ypcxlchjysd7y3b6h6h97k327yd0"; depends=[dplyr purrr rlang XML]; }; + washex = derive2 { name="washex"; version="1.1.0"; sha256="01535lxl90dg9lsqw5xhhw9l4wb0ghjbf88kqs0dz6p4p3jiwzrh"; depends=[curl dplyr httr purrr rlang XML xml2]; }; waspr = derive2 { name="waspr"; version="1.0.0"; sha256="0rs7h9pjiqq7as5k7yrj3phn6lgdl7dzyirbmk2jjp7mw9iqhy9i"; depends=[BH Rcpp RcppArmadillo]; }; waterData = derive2 { name="waterData"; version="1.0.8"; sha256="0884agh876wf3qlbc75fbaa47x2iwvncz7r2l25qw34n8lxq1yr6"; depends=[dataRetrieval lattice latticeExtra lubridate xml2]; }; waterYearType = derive2 { name="waterYearType"; version="1.0.1"; sha256="09brbqcd41khycz9lhn84w68wpk8lsdnzb6lzc10gm5s5ambgj06"; depends=[]; }; @@ -18087,7 +18139,7 @@ in with self; { wec = derive2 { name="wec"; version="0.4-1"; sha256="10lqh43536d44d6082rpp11q1323pmjbmgrgb8v9mrk9c1ysf50w"; depends=[dplyr]; }; weco = derive2 { name="weco"; version="1.2"; sha256="1prk8hn782pd8g2rbbaj7y10vjimqs9n8i4rab6aw6fc3k759d6b"; depends=[]; }; weed = derive2 { name="weed"; version="1.1.1"; sha256="18kz10c580a25cxcghvp81irwqncvhjan3y5gnzy8gxm894q3p7m"; depends=[countrycode dplyr forcats geonames ggplot2 here magrittr purrr readxl rgeos sf stringr tibble tidyr tidytext]; }; - wehoop = derive2 { name="wehoop"; version="1.2.0"; sha256="15bsa5cyv5gfcajbl0c5rlqyafp7z8v2068js2gr6pbc6907cbhf"; depends=[cli data_table dplyr furrr future glue janitor jsonlite magrittr progressr Rcpp RcppParallel rlang rvest stringr tidyr usethis]; }; + wehoop = derive2 { name="wehoop"; version="1.2.1"; sha256="1w6zrn2w86qrnx7jrc1fldfpg21rryq8r552323rd2p8n8d0w012"; depends=[data_table dplyr furrr future glue janitor jsonlite magrittr progressr Rcpp RcppParallel rlang rvest stringr tidyr usethis]; }; weibull4 = derive2 { name="weibull4"; version="1.0.0"; sha256="1a95yw67iy7dqib33v31apxmskl019zng66jrlflbqx6p2vjdh30"; depends=[]; }; weibullness = derive2 { name="weibullness"; version="1.19.8"; sha256="19s44mxxcnhngifxshsyjr3a9zvbwywmqgby5dxd73yid1p2k9mr"; depends=[]; }; weibulltools = derive2 { name="weibulltools"; version="2.0.0"; sha256="1flgnsivam9vyrs6hwn3119s5bzczjm5qb1xjwydl1cd6r2984k5"; depends=[dplyr ggplot2 lifecycle magrittr plotly purrr Rcpp RcppArmadillo sandwich segmented SPREDA survival tibble tidyr]; }; @@ -18115,7 +18167,7 @@ in with self; { whisker = derive2 { name="whisker"; version="0.4"; sha256="1a7vz0dk95xfjvi38wbpw8vmf5qn3g8p490msz2rw0piwidmk1ks"; depends=[]; }; whitebox = derive2 { name="whitebox"; version="2.0.0"; sha256="0qw96ma3hbwqc258chcsjgg0c6c3xi6d1q0iin3rdr8nvczinxma"; depends=[]; }; whitechapelR = derive2 { name="whitechapelR"; version="0.3.0"; sha256="0mnq5m59mw8w5g1p0h2xzlz738j397b3444km59bm5yln3j0nsbi"; depends=[igraph plyr]; }; - whitening = derive2 { name="whitening"; version="1.2.0"; sha256="08j49kpbybw8j25ckzvbzqxigqzdxb56lryi06kbzcja0mlzrhvb"; depends=[corpcor]; }; + whitening = derive2 { name="whitening"; version="1.3.0"; sha256="13c06sk4n2821pskqi8vk61khyhswddcir9qr8zy15czn5id3i1j"; depends=[corpcor]; }; whitestrap = derive2 { name="whitestrap"; version="0.0.1"; sha256="1jcnxqxvkhyz9j6jay5834ncv5fxb9qiyyyj3b8al75mqknmn8ra"; depends=[]; }; whoa = derive2 { name="whoa"; version="0.0.2"; sha256="1wa1s2dqwkmfa3avrgqkm6w59b6vm2xnnb77q25w187wdpjq65xx"; depends=[dplyr ggplot2 magrittr Rcpp tibble tidyr vcfR viridis]; }; whoami = derive2 { name="whoami"; version="1.3.0"; sha256="19fwl7z55s4kl2xzwqwh8iwg13kdrv222vyl3kibxgwrjcjwj2y2"; depends=[httr jsonlite]; }; @@ -18155,10 +18207,11 @@ in with self; { wmm = derive2 { name="wmm"; version="1.1.1"; sha256="0qy4cp4d8nlcqlcs4mqjv1f1kf1yh9y2wvh1ak6f049qlj7yfwfb"; depends=[]; }; wmwpow = derive2 { name="wmwpow"; version="0.1.3"; sha256="03rd75r4wih1w7srhnwqxjkirisb43y1sd2f1wzixqj8lq0dmb25"; depends=[lamW MASS smoothmest]; }; wnl = derive2 { name="wnl"; version="0.6.3"; sha256="199fkpbflnrk27gymxp7ikjxq9hwg0zydlb25fns7b8l9xl2glmg"; depends=[numDeriv]; }; + wnominate = derive2 { name="wnominate"; version="1.3"; sha256="0k4w6qbmwqd720dsslmb3xl53lr0b16rr0w9frybfq4046g9i2c6"; depends=[pscl]; }; woe = derive2 { name="woe"; version="0.2"; sha256="15mvcmwnrqxpzn054lq85vyzq5rgxkiwbd40gnn4s3ny1xdrwgsm"; depends=[]; }; woeBinning = derive2 { name="woeBinning"; version="0.1.6"; sha256="0x890h5fh59n54587adyzphr956fkg3px8i7c378aq1fs7k35gxs"; depends=[]; }; womblR = derive2 { name="womblR"; version="1.0.4"; sha256="0yjz4nymhqq6aqvxf0a90bw3hi1zqz1zp3mxbv2ns5v5ygh2a10p"; depends=[msm mvtnorm Rcpp RcppArmadillo]; }; - wooldridge = derive2 { name="wooldridge"; version="1.4-1"; sha256="1835rn2hxr58yr829crdfjgyi02xplvxdgrp7ywzfpbhwpch6mp7"; depends=[]; }; + wooldridge = derive2 { name="wooldridge"; version="1.4-2"; sha256="06rc510wmkakc19hcqmya6mgrg2g3x0fkzjb3ix0rayh7lddhy4p"; depends=[]; }; worcs = derive2 { name="worcs"; version="0.1.8"; sha256="00h99f5xk1gaqcdy1qh2dxbmay1310w64paiv68a8003wp7yn6p0"; depends=[digest gert prereg ranger rmarkdown rticles yaml]; }; word_alignment = derive2 { name="word.alignment"; version="1.1"; sha256="0inlq96j4zkjncz2v66amz91l5y3b5lx49qi2jg6jbqdldw7aa02"; depends=[data_table openxlsx]; }; word2vec = derive2 { name="word2vec"; version="0.3.4"; sha256="0qj39vms6zgwb8lpmfkppayizdmhakic3pkacglary3ain61vnsk"; depends=[Rcpp RcppProgress]; }; @@ -18234,7 +18287,7 @@ in with self; { xesreadR = derive2 { name="xesreadR"; version="0.2.3"; sha256="1pvdx0mxg2f885bhy4hb3kqzcgva4q7hzzaipkfzyi5lnjdsbc81"; depends=[bupaR data_table dplyr lubridate purrr stringr tidyr XML xml2]; }; xfun = derive2 { name="xfun"; version="0.28"; sha256="0civd050r94w2vwfx3xgz1w36wkwrkm5dscdv5kb3klbvqwy8nqb"; depends=[]; }; xgb2sql = derive2 { name="xgb2sql"; version="0.1.2"; sha256="1gw5dw0ck5hip8mv347zaswrggk395bg2hgn02bvqs0d31jhmgvi"; depends=[data_table xgboost]; }; - xgboost = derive2 { name="xgboost"; version="1.4.1.1"; sha256="1i706h6yhayzbqlqa1z6fgjc56kxm3isz0jw6d26fpyfjlw6z64z"; depends=[data_table jsonlite magrittr Matrix]; }; + xgboost = derive2 { name="xgboost"; version="1.5.0.1"; sha256="1ya3mm4sl1yg1q9xmzfdzygqqrq49wa8y3p5j0256nn24w0lzlw6"; depends=[data_table jsonlite Matrix]; }; xgobi = derive2 { name="xgobi"; version="1.2-15"; sha256="03ym5mm16rb1bdwrymr393r3xgprp0ign45ryym3g0x2zi8dy557"; depends=[]; }; xgxr = derive2 { name="xgxr"; version="1.1.1"; sha256="00fd9n2qivfxg2b7vynssc82afa7nskg4akk6cgxnyhcai5jbmra"; depends=[assertthat binom Deriv DescTools dplyr ggplot2 glue gtable Hmisc labeling magrittr minpack_lm pander png RCurl readr scales stringr tibble]; }; xkcd = derive2 { name="xkcd"; version="0.0.6"; sha256="1z2y0ihn68ppay7xkglhw7djki5654g6z4bbpyy41if57z9q554f"; depends=[extrafont ggplot2 Hmisc]; }; @@ -18303,7 +18356,7 @@ in with self; { yll = derive2 { name="yll"; version="1.0.0"; sha256="0lf3cd6pfzki29nk2iy0vd6v4dw6zlsbrjh2839zq5vlpiimsvck"; depends=[]; }; ymlthis = derive2 { name="ymlthis"; version="0.1.5"; sha256="02flsiqzpasyvskzlygllmrc1vbd4cv6yx4cdfiqrcq1806kdrf2"; depends=[crayon fs glue magrittr miniUI purrr rlang rmarkdown rstudioapi shiny shinyBS stringr usethis whoami withr yaml]; }; yonder = derive2 { name="yonder"; version="0.2.0"; sha256="1ilzn17w6skd0dhwxyrgnfzyazafp8hsi8q6pfxz6k16cd668mc0"; depends=[htmltools magrittr shiny]; }; - yorkr = derive2 { name="yorkr"; version="0.0.27"; sha256="0lgnfrq9nvy1z2fk9ihgxbjd4xc23vvi547mkwwfzgc7g2kznkca"; depends=[dplyr ggplot2 gridExtra reshape2 rpart_plot yaml]; }; + yorkr = derive2 { name="yorkr"; version="0.0.28"; sha256="074hvxgw827xkawrfn5sg7c5rgxx3n5jrbkl6rf7qlq6zjph23ab"; depends=[dplyr ggplot2 gridExtra reshape2 rpart_plot yaml]; }; youtubecaption = derive2 { name="youtubecaption"; version="1.0.0"; sha256="15cafl7b03xrql2y2ayy6ajf6v764wym3xqs4pbzlf6ncy8qwl5r"; depends=[dplyr magrittr purrr reticulate stringr tibble writexl]; }; yowie = derive2 { name="yowie"; version="0.1.0"; sha256="1sm3dg4sirvlb17ciwldvnc1zzfgwxm38x1k2n99nwa6sygn1nrw"; depends=[tsibble]; }; ypr = derive2 { name="ypr"; version="0.5.2"; sha256="1bbcwy4hngai6cajgcir1g6hdjh9xdpfcxqzm8ba8ikyjfzwn9bw"; depends=[chk ggplot2 lifecycle purrr scales yesno]; }; @@ -18365,19 +18418,20 @@ in with self; { AnimalAPD = derive2 { name="AnimalAPD"; version="1.0.0"; sha256="1csa6disrg11hpxg4zw0jay15srw9lsgbhl1xgl7hpdr3nqsv3s7"; depends=[activityGCMM brms circular ggplot2 gridExtra loo overlap]; broken = true; }; BALD = derive2 { name="BALD"; version="1.0.0-3"; sha256="1azyqami07g3ax60j0ws3d1qha65k0svn2v5c9pisni0qch5xql0"; depends=[lattice logspline rjags]; broken = true; }; BCA = derive2 { name="BCA"; version="0.9-3"; sha256="0ksd6b0ykydgdn33x29bwwqkrp23cvdj3imps0l6qs1p4465j5nf"; depends=[car clv flexclust Rcmdr RcmdrMisc rpart]; broken = true; }; + BIS = derive2 { name="BIS"; version="0.2.1"; sha256="0mngmchgc46wc9a7ksyqrvj6k46nm4ih7x69k3xijfia9bgkym0v"; depends=[dplyr readr rvest tidyr xml2]; broken = true; }; BNN = derive2 { name="BNN"; version="1.0.2"; sha256="13h9xqfdqnc9d8brx1xlmvb4nrkpwncwjz98y7i3wijih85wkikd"; depends=[mvtnorm]; broken = true; }; BayesFM = derive2 { name="BayesFM"; version="0.1.4"; sha256="14m318nxb4aqxni4zm0p6g9pysx81rmay48qglwm98gmdjxigzzk"; depends=[checkmate coda ggplot2 gridExtra plyr]; broken = true; }; - BayesPostEst = derive2 { name="BayesPostEst"; version="0.3.1"; sha256="0pfildzmqdwnj6h2k692ym9i37lwc65jqgjcx6h3cz8spcmzxm8y"; depends=[carData caTools coda dplyr ggplot2 ggridges HDInterval reshape2 rlang ROCR texreg tidyr]; broken = true; }; CLA = derive2 { name="CLA"; version="0.96-1"; sha256="1nxzs0y6mid5f2903pxrkqc3rhk7vpax8wm588ddlz6c97y3m8gk"; depends=[]; broken = true; }; + CPE = derive2 { name="CPE"; version="1.5.1"; sha256="0n3pd6daj0mzhh547syh7nz8iys6q27igqngldb8zd4ib4778603"; depends=[rms survival]; broken = true; }; + CatPredi = derive2 { name="CatPredi"; version="1.2"; sha256="029haj44smz2k6vpk10bv3ri9qsy0ss2fn1mhw8vj42f3g8i39jb"; depends=[CPE mgcv rgenoud rms survival]; broken = true; }; ConfoundedMeta = derive2 { name="ConfoundedMeta"; version="1.3.0"; sha256="17l6dfff2v0a4p022qclrmkzi78ga9adkgxgrgk9imz0n9m9424d"; depends=[ggplot2 metafor]; broken = true; }; CytobankAPIstats = derive2 { name="CytobankAPIstats"; version="2.0"; sha256="0xczcgaxd8dv6fd1j5c8y4il852lq8859d1y16sxs8a3gqn9fbz2"; depends=[CytobankAPI pheatmap shiny shinyFiles xlsx]; broken = true; }; DNH4 = derive2 { name="DNH4"; version="0.1.11"; sha256="15a1hq8f8nz200apbm28dwyphl18rhicmf7irsdj0z1n1j898c44"; depends=[httr rvest tibble tidyr xml2]; broken = true; }; + DataEntry = derive2 { name="DataEntry"; version="0.9-3"; sha256="0gfsg7wfwy88x7y1dwpgwi6fkizjnhrzj0a5ij70y4a4sjmyiy55"; depends=[digest gWidgets2 gWidgets2RGtk2 RGtk2]; broken = true; }; DengueRT = derive2 { name="DengueRT"; version="1.0.1"; sha256="11qfg4l6y3j8qh4dcsz13xjjj1n0q71c9a3c180nm5lgqv0nwb81"; depends=[drc ggplot2 nlme]; broken = true; }; - EGAnet = derive2 { name="EGAnet"; version="0.9.8"; sha256="1mdvp67wnbgmdhdwlgq8p20vhbv4m3fyvdw3zrcxy9zd8mchjydh"; depends=[dplyr GGally glasso igraph lavaan Matrix network NetworkToolbox qgraph semPlot]; broken = true; }; EpiSignalDetection = derive2 { name="EpiSignalDetection"; version="0.1.1"; sha256="04bagnx9fs0r3167hmwgc389fl5hq7l4j6kdjjmi360vcaimx9qi"; depends=[dplyr DT ggplot2 ISOweek knitr pander rmarkdown shiny surveillance]; broken = true; }; Eunomia = derive2 { name="Eunomia"; version="1.0.1"; sha256="06a42qsf3nx1pbynikkdvmbhh1rmgnfmiggdn86b3a0ij6cq0p2r"; depends=[DatabaseConnector RSQLite SqlRender]; broken = true; }; GEVACO = derive2 { name="GEVACO"; version="1.0.0"; sha256="0rslnxqbj1pbbnp849pdn6l9dyfib9w19a1q3fw7kdjfir76gk6a"; depends=[nlme RLRsim]; broken = true; }; - GLIDE = derive2 { name="GLIDE"; version="1.0.2"; sha256="1z5h8br6aig24g5gsh8h6npm269id3h5gjjyf5avs4v08b51rpcv"; depends=[doParallel foreach MASS]; broken = true; }; GPSeqClus = derive2 { name="GPSeqClus"; version="1.0.0"; sha256="1zxihac4hd2b1vvrb36v2c6lhn8pfs8q4zgzi2flyb0dnb5di09r"; depends=[geosphere leaflet leaflet_extras plotKML plyr purrr rgdal sp spacetime suncalc]; broken = true; }; GeneBook = derive2 { name="GeneBook"; version="1.0"; sha256="1cg8zyr7rbshj3shhzkrxs910dsz4brhh51jvn2qzipzd8dbvxiv"; depends=[dplyr repmis stringr svDialogs]; broken = true; }; ICSsmoothing = derive2 { name="ICSsmoothing"; version="1.2.5"; sha256="08m8p6y5zk54ha3wp5x9xbx6f2xkkqx232hsan1f1s8k9j3q5avd"; depends=[ggplot2 polynom]; broken = true; }; @@ -18395,8 +18449,6 @@ in with self; { MRMR = derive2 { name="MRMR"; version="0.1.4"; sha256="0dgbhlynaaka7mdzl6igwgcdzvy6cm2y8mbxaf9pfla8w3z8y0lq"; depends=[ggplot2 lmtest lubridate plyr reshape2]; broken = true; }; MVT = derive2 { name="MVT"; version="0.3"; sha256="0vinlv3d5daf8q7pd9xgs51nxz2njgdba5750vygmv883srlzi9d"; depends=[]; broken = true; }; MetaboLouise = derive2 { name="MetaboLouise"; version="1.0.0"; sha256="1agcp520in0wpxv3x2jvvmv61hasazdymnvjhzl66nwv8lifl98z"; depends=[igraph]; broken = true; }; - MixfMRI = derive2 { name="MixfMRI"; version="0.1-1"; sha256="0nqsvfr28m510gqwcv0s2b94k42m7m6s7ffsjxn6kxikh5p3y6gz"; depends=[EMCluster fftw MASS Matrix MixSim RColorBrewer]; broken = true; }; - MoBPS = derive2 { name="MoBPS"; version="1.6.54"; sha256="1r15ag7c56bi54mby8kxb74l5v4qihdj7cr3i5vg8p5qpmvsff8m"; depends=[]; broken = true; }; Myrrix = derive2 { name="Myrrix"; version="1.2"; sha256="05x2h4ppjhfm0wlpwyp8ycjg59qj3gv0yqdilxrzb1lkrzln92xb"; depends=[Myrrixjars rJava]; broken = true; }; Myrrixjars = derive2 { name="Myrrixjars"; version="1.0-2"; sha256="1hhfg83z5kl6l250z3lippx3qc68k1wj1qlfzd6m66rgmk699gyl"; depends=[rJava]; broken = true; }; N2H4 = derive2 { name="N2H4"; version="0.5.9"; sha256="09ikdnn17zx9l683k6mrc4hifxnd5d7fjxm6qdvxxbn10dh6qgvj"; depends=[dplyr httr jsonlite lubridate rvest tibble tidyr xml2]; broken = true; }; @@ -18406,6 +18458,7 @@ in with self; { Plasmode = derive2 { name="Plasmode"; version="0.1.0"; sha256="1qcni9zdckhsnw616jn7rdfd09kbl5wd4hljdja0w73jz1wd1z14"; depends=[arm epiDisplay foreign gbm glm2 lattice latticeExtra lme4 MASS Matrix mgcv nlme nnet RColorBrewer survey survival twang xtable]; broken = true; }; QZ = derive2 { name="QZ"; version="0.2-1"; sha256="1xivasa5dppm9z02ki6ciqxj0ybxch41w1xszl9zqrf755b6f6xw"; depends=[Matrix]; broken = true; }; QuantumClone = derive2 { name="QuantumClone"; version="1.0.0.6"; sha256="1520jgkzp8g7gv7ggqhvlrdnpdyhygqjgsd1my5jq30afdqj6qmp"; depends=[DEoptim doParallel foreach fpc ggplot2 gridExtra NbClust optimx]; broken = true; }; + RAhrefs = derive2 { name="RAhrefs"; version="0.1.4"; sha256="0yd7jbv2x711dnhbvwjjg7qhg8h8bh5564amsv9bkqw661i042m3"; depends=[assertthat httr jsonlite testthat]; broken = true; }; RDFTensor = derive2 { name="RDFTensor"; version="1.3"; sha256="1kfhhn0lb1r61bkgxn7rv1smgk8b7vxbc8y97hdmg5argiywc65i"; depends=[doParallel foreach Matrix pracma]; broken = true; }; RNAsmc = derive2 { name="RNAsmc"; version="0.6.0"; sha256="0q4b24baabzx41zqygy6l2jnyzc4m7knmlnhra4hhc5f5cl5ab8r"; depends=[circlize RRNA]; broken = true; }; RNRCS = derive2 { name="RNRCS"; version="0.2.5"; sha256="19q78l8mh4701vqvr36vqc87n39s5ivzhiy5lvnxbd4dgibk1jr2"; depends=[ggplot2 magrittr rvest xml2]; broken = true; }; @@ -18413,6 +18466,8 @@ in with self; { RefFreeEWAS = derive2 { name="RefFreeEWAS"; version="2.2"; sha256="1aya34iz5v3xfpj86x9ab998m7fdwl138ly007mgdayacvqi4a6y"; depends=[quadprog]; broken = true; }; Rhpc = derive2 { name="Rhpc"; version="0.21-247"; sha256="0r4zikqzkcyyvywxq1s8jcq6h559mxilkmzpnl79781hh537jvii"; depends=[]; broken = true; }; SEAA = derive2 { name="SEAA"; version="0.9.6"; sha256="0f1j8pq3a0liyjxjlc91v8nm5y0fr8fq7qlhdayvkf1fx96srqs2"; depends=[clusterProfiler ggforce ggplot2 ggpubr ggrepel gridExtra org_Hs_eg_db org_Mm_eg_db reshape2 Rsubread tidyr]; broken = true; }; + SNPassoc = derive2 { name="SNPassoc"; version="2.0-2"; sha256="16raq5nkm24xqfshncwmf46z2naf2fcixgjs9b7gy1368wn3ahzl"; depends=[BiocStyle ggplot2 haplo_stats mvtnorm plyr poisbinom survival tidyr]; broken = true; }; + SpatialEpiApp = derive2 { name="SpatialEpiApp"; version="0.3"; sha256="0svnnzqshk08s58ishy8xhqch44mb5svgfphkvpgysdd68dgaysr"; depends=[dplyr dygraphs ggplot2 htmlwidgets knitr leaflet mapproj maptools RColorBrewer rgdal rgeos rmarkdown shiny shinyjs SpatialEpi spdep xts]; broken = true; }; StatCharrms = derive2 { name="StatCharrms"; version="0.90.96"; sha256="1451aj1476qjpmxhpbgd8g55i7rp2msml64xsiy25h7x9g6d9w05"; depends=[cairoDevice car clinfun coxme gWidgets2 gWidgets2RGtk2 lattice multcomp nlme R2HTML RGtk2 RSCABS survival]; broken = true; }; SymTS = derive2 { name="SymTS"; version="1.0"; sha256="17vhm00zd9yxl6li36bsfkm4rsizjsm93ibrzgqnkl72sqmmlwfi"; depends=[]; broken = true; }; TLBC = derive2 { name="TLBC"; version="1.0"; sha256="08w187akbhfbz6nrrf7avf02lrhgj7bbrjmim9gkh4wlbjhzvw67"; depends=[caret HMM randomForest signal stringr]; broken = true; }; @@ -18430,29 +18485,24 @@ in with self; { adoption = derive2 { name="adoption"; version="0.6.4"; sha256="1xjkvj1ys2xmjgswqfsrry27zyqcc9hk9khl0j4s72gcc8az8sz6"; depends=[quadprog RandomFieldsUtils tkrplot]; broken = true; }; agroclim = derive2 { name="agroclim"; version="0.1.0"; sha256="16cyqplzmwziqwkicix0sr06zhc0yx615iv3hda0cxbdyf2rllk3"; depends=[abind cowplot easyNCDF ggforce ggplot2 ggpubr gtable multiApply ncdf4 plyr raster reshape sp zoo]; broken = true; }; amber = derive2 { name="amber"; version="1.0.3"; sha256="0kc7g5rb0wrs1id1k0qay56063gpffwvcll38983b1l3k215mxiv"; depends=[classInt doParallel foreach Hmisc latex2exp ncdf4 raster rgdal rgeos scico sp viridis xtable]; broken = true; }; + amt = derive2 { name="amt"; version="0.1.4"; sha256="0xdrpkirdxmni3bcqjjx8xxh3b0bllmsgc3r7h9zd7sf0p3aldhs"; depends=[checkmate circular ctmm dplyr fitdistrplus lubridate magrittr purrr raster Rcpp Rdpack rgeos rlang sf sp survival tibble tidyr]; broken = true; }; anominate = derive2 { name="anominate"; version="0.6"; sha256="01p2qkqf88bzhwywyass5r8dwg2ycflmkbzmsps7fzy0kv3xyb02"; depends=[coda MCMCpack pscl wnominate]; broken = true; }; aptg = derive2 { name="aptg"; version="0.1.1"; sha256="0mdhgc0jrl2za3k2awm92vky2ghcssqq1x2h57ns9b17lwdrsdl4"; depends=[ape brranching phytools taxize xml2]; broken = true; }; artemis = derive2 { name="artemis"; version="1.1.1"; sha256="1v875xn0mvw7p7jdp6d3hpc4cp8yq2aq0b80rq1c619n9rkjq4ks"; depends=[BH ggplot2 lme4 loo Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; broken = true; }; aspline = derive2 { name="aspline"; version="0.1.0"; sha256="1xywp471ly6f0n88lwhpwlg54fizdkjxksli9c60vbi8r56n46mr"; depends=[dplyr fda ggplot2 magrittr Matrix mgcv pryr pspline Rcpp reshape2 rlang splines2 tidyr]; broken = true; }; ausplotsR = derive2 { name="ausplotsR"; version="1.2.6"; sha256="1vnf1rhg5frv1kc5bdssvljww6bw2q1cj29y4304851fifk8l502"; depends=[betapart curl ggplot2 gtools httr jose jsonlite mapdata maps maptools plyr R_utils simba sp vegan]; broken = true; }; - bRacatus = derive2 { name="bRacatus"; version="1.0.5"; sha256="1ir5q8q9kssbcakfi0lpixxgcmcla2p3j8a290p5h3zddbp41az6"; depends=[data_table geojsonio jsonlite maptools plotfunctions raster rgbif rgdal rgeos rworldmap sp]; broken = true; }; batchr = derive2 { name="batchr"; version="0.0.2"; sha256="0fkrv6dlyla7bbl00f16lypnz5idyjz9kdqslgbx3pnfwx5hngwx"; depends=[chk cli furrr hms hmstimer yesno]; broken = true; }; - biblio = derive2 { name="biblio"; version="0.0.2"; sha256="1yx90cmkcm5vran3n0p8l3hz9sqny7bhzgvnlsa8f4fddh0ah78p"; depends=[stringr yamlme]; broken = true; }; binomialMix = derive2 { name="binomialMix"; version="1.0.1"; sha256="1ak3h0lgjmrv9miwn7fl6jvcp8xdld53swjz71q67q999s42np0m"; depends=[dplyr gmp lubridate MASS rlang Rmpfr stringr]; broken = true; }; bmd = derive2 { name="bmd"; version="0.5"; sha256="0d4wxyymycb416sdn272292l70s1h2m5kv568vakx3rbvb8y6agy"; depends=[drc]; broken = true; }; boostr = derive2 { name="boostr"; version="1.0.0"; sha256="123ag8m042i1dhd4i5pqayqxbkfdj4z0kq2fyhxfy92a7550gib2"; depends=[foreach iterators stringr]; broken = true; }; caliver = derive2 { name="caliver"; version="2.0.0"; sha256="04qa3zrk70c8ak70djfh23jyfxs8293s8wzkk6cs0nyrknhaxzzj"; depends=[ggplot2 lubridate ncdf4 raster rworldmap]; broken = true; }; - chicane = derive2 { name="chicane"; version="0.1.7"; sha256="0gaq1icwbcn1lzj92qhmai2cwvkm26m8srw988cb6xd51v819v3l"; depends=[bedr data_table doParallel foreach gamlss gamlss_tr iterators knitr MASS rmarkdown]; broken = true; }; compstatr = derive2 { name="compstatr"; version="0.2.1"; sha256="0pg8yacfb7jvg9xr0gmis8a4g339isd77h6wr8dd6w900q47xac0"; depends=[dplyr fs httr janitor lubridate purrr readr rlang rvest sf stringr tibble tidyr xml2]; broken = true; }; connections = derive2 { name="connections"; version="0.1.1"; sha256="08fbyzyp26nh1a46p0zi3q0wzgl0cd9bjp4lhw2bwv1bv7yayamp"; depends=[DBI dbplyr dplyr pins rscontract uuid]; broken = true; }; contextual = derive2 { name="contextual"; version="0.9.8.4"; sha256="0lww36nymg2cla83jdvl7a42cwn0il20apciz0ddplq8rw2i0a91"; depends=[data_table doParallel foreach Formula iterators itertools R_devices R6 rjson]; broken = true; }; cplexAPI = derive2 { name="cplexAPI"; version="1.4.0"; sha256="00h2zir1ffzjiglfyq8bsfmgq9z155jr0k0fxv8fsbfyw2x9dg10"; depends=[]; broken = true; }; - cubfits = derive2 { name="cubfits"; version="0.1-3"; sha256="0i2iybm9vpyqnahzka66yms1namdd36bz1i1yjy74qsc1h995rga"; depends=[coda foreach]; broken = true; }; cuml = derive2 { name="cuml"; version="0.2.1"; sha256="1dmk1gvvzkwfra63qslax9cgqjbsiqam5wcjl955wpb0wdqpa54k"; depends=[ellipsis hardhat magrittr parsnip Rcpp rlang]; broken = true; }; - cyclestreets = derive2 { name="cyclestreets"; version="0.5.0"; sha256="1a7b28832w1qjqfr6i8apki01y53fq9nwg2bjzgyly363b0aghq4"; depends=[geodist httr jsonlite magrittr sf stringr]; broken = true; }; danstat = derive2 { name="danstat"; version="0.1.0"; sha256="1wb4v4s9qc7qna7jgd1kk0xvyaqmxhnmjvr5wlk5jjl355lhjxbc"; depends=[httr jsonlite readr]; broken = true; }; data_validator = derive2 { name="data.validator"; version="0.1.5"; sha256="1p2dzn9q3vrqs3askp8ccriaxyhay8iyqhnaryr1drycwrd13wi8"; depends=[assertr dplyr htmltools htmlwidgets knitr purrr R6 rlang rmarkdown shiny shiny_semantic tibble tidyr]; broken = true; }; - dataReporter = derive2 { name="dataReporter"; version="1.0.0"; sha256="12rwjd46h35cydvfx5qhb4rssqpm94b628zr06gy9nhwydnajn5x"; depends=[ggplot2 gridExtra haven htmltools magrittr pander rmarkdown robustbase stringi whoami]; broken = true; }; diffman = derive2 { name="diffman"; version="0.1.1"; sha256="08b4kqxfg8pmyl2xg8flb581s9wnkdcy5rrmrxp8a89y265qmirx"; depends=[data_table dplyr igraph Matrix progress Rcpp sf tidyverse]; broken = true; }; dpa = derive2 { name="dpa"; version="1.0-3"; sha256="0dmwi68riddi1q4b10c12wx6n7pqfmv30ix5x72zpdbgm72v343h"; depends=[igraph sem]; broken = true; }; dynamicGraph = derive2 { name="dynamicGraph"; version="0.2.2.6"; sha256="1xnsp8mr3is4yyn0pyrvqhl893gdx2y1zv8d2d55aah2xbfk0fjj"; depends=[ggm]; broken = true; }; @@ -18465,7 +18515,7 @@ in with self; { fabisearch = derive2 { name="fabisearch"; version="0.0.3.6"; sha256="0gaw9hk7il4fsc0mklb3pfxl6kg7amydvqar8m2524hcb7ar835z"; depends=[doParallel doRNG foreach NMF reshape2 rgl]; broken = true; }; feedeR = derive2 { name="feedeR"; version="0.0.10"; sha256="1p64c7ibwn6k5k3vsjxrcjr84czild7g8bqw0yv4axk52vk5jfkx"; depends=[digest dplyr lubridate readr stringr tibble xml2]; broken = true; }; fpmoutliers = derive2 { name="fpmoutliers"; version="0.1.0"; sha256="108bp3smk9jnckd5237xly4ywmal03rq1kidq5z61l6zrhc3yfh9"; depends=[arules doParallel foreach Matrix pmml pryr R_utils XML]; broken = true; }; - fuzzyreg = derive2 { name="fuzzyreg"; version="0.5.1"; sha256="19ppb1m655z3n7h4wcd5bwjciw4ynjbi883ki50mr5di3zy64n4r"; depends=[limSolve quadprog]; broken = true; }; + gWidgets2RGtk2 = derive2 { name="gWidgets2RGtk2"; version="1.0-7"; sha256="14c933j0wj3lb5da75zxg3w3mfqh0nqk8rczbi4dnqd8sna6jks9"; depends=[gWidgets2 memoise RGtk2]; broken = true; }; gdmp = derive2 { name="gdmp"; version="0.2.0"; sha256="0fy8x9l6swrb78apwq9d9msz2y8dkfd2fkyp1pkmzxwdb85lmcdm"; depends=[]; broken = true; }; gfmR = derive2 { name="gfmR"; version="1.1-0"; sha256="0qzzbcra1fnbp0h31b1as20yhmqmi7p62xrhikj64an9avg9b277"; depends=[faraway nnet]; broken = true; }; ggguitar = derive2 { name="ggguitar"; version="0.1.1"; sha256="1lmfs54h91gzcxin37v4flkywbq3fs648mm1h9ak03xlj5nagzsi"; depends=[dplyr ggplot2 gridExtra lazyeval readr tibble]; broken = true; }; @@ -18479,6 +18529,7 @@ in with self; { hdpGLM = derive2 { name="hdpGLM"; version="1.0.0"; sha256="04mn0cbbx66218rsd273yh29h28f1xl8k0whwlyn6hrg035mlk0x"; depends=[coda data_table dplyr formula_tools ggjoy ggplot2 ggpubr ggridges Hmisc isotone LaplacesDemon magrittr MASS MCMCpack mvtnorm purrr questionr Rcpp RcppArmadillo rprojroot stringr tibble tidyr tidyverse]; broken = true; }; healthforum = derive2 { name="healthforum"; version="0.1.0"; sha256="13ih00amv9hrpngm6pxc8vzqzhx8c0yqgaprxdcp5li90lg5r3av"; depends=[magrittr purrr rvest stringr tokenizers xml2]; broken = true; }; hockeyR = derive2 { name="hockeyR"; version="0.1.1"; sha256="1rzm67ib4i7qa0x302g9k5bm5vabg39l1da5brnkkh9fp6v37lb6"; depends=[dplyr glue httr janitor jsonlite lubridate magrittr polite purrr rvest stringr tidyr zoo]; broken = true; }; + icardaFIGSr = derive2 { name="icardaFIGSr"; version="1.0.1"; sha256="1jmqhzc1nkbw3r9p4skh4pcp6986fa09h5bcyx99892gwn9dh7g0"; depends=[caret doParallel dplyr foreach ggplot2 gWidgets2 gWidgets2RGtk2 httr leaflet magrittr plotROC plyr raster reshape2 RGtk2 sp]; broken = true; }; incadata = derive2 { name="incadata"; version="0.9.1"; sha256="0987zazkp3cxvk88i3yqb70s2i1cg108vc8wyhh2867s3rqdrpgh"; depends=[decoder rvest sweidnumbr xml2]; broken = true; }; ipmisc = derive2 { name="ipmisc"; version="6.0.2"; sha256="1dn815p2k1v371pv5fra6541zwc1hyjzxlx11m8pgfcyrfgmicyk"; depends=[dplyr magrittr rlang tibble tidyr zeallot]; broken = true; }; itemanalysis = derive2 { name="itemanalysis"; version="1.0"; sha256="1ksbd69mca45jlr2gpars87cf4jfm5rx6sz009sv6a83x831x5rq"; depends=[car ggplot2 polycor]; broken = true; }; @@ -18489,9 +18540,11 @@ in with self; { libproj = derive2 { name="libproj"; version="8.1.0-1"; sha256="16mavs0kpbn1lskfgyzgw5ns270kdvvh2991c8w26cyl23zrcys6"; depends=[cpp11 rappdirs]; broken = true; }; likeLTD = derive2 { name="likeLTD"; version="6.3.0"; sha256="1mjf4667xd9pf2684d7vqaj54l5s9pgljn4vkfp32wzbfknq6y8r"; depends=[DEoptim gdata ggplot2 gtools rtf]; broken = true; }; lmSupport = derive2 { name="lmSupport"; version="2.9.13"; sha256="0ln5c91mbxkymgnv2nw5m3nrm5bwckpikgb9x1qhmjc55m98wkb8"; depends=[AICcmodavg car gplots gvlma lme4 pbkrtest psych pwr]; broken = true; }; + maGUI = derive2 { name="maGUI"; version="3.0"; sha256="1ak2sa6y766v5zh54bf7j9hklmkia40nsdchyw834ybb9ijjyjsm"; depends=[Biobase gWidgets2 gWidgets2RGtk2 impute limma Rgraphviz RGtk2 ssize]; broken = true; }; machQA = derive2 { name="machQA"; version="0.1.4"; sha256="1rdrjy9sxql2c9y691a1jrmgsv7m1ihsschixxb6wc7aahf7mav6"; depends=[machina plyr]; broken = true; }; machina = derive2 { name="machina"; version="0.1.6"; sha256="009mzqb5jgnilj9b5ldmm5600008bljlqacm8jjxvqsfnfdfg8zv"; depends=[DT httr jsonlite lubridate rhandsontable xts]; broken = true; }; mcmcabn = derive2 { name="mcmcabn"; version="0.4"; sha256="0ym7ngai8pv9xalh1s53p8f96s8xpc05zi6ryih2rjv449ib06kq"; depends=[abn coda cowplot ggplot2 ggpubr gRbase]; broken = true; }; + miceMNAR = derive2 { name="miceMNAR"; version="1.0.2"; sha256="1s607icaf3c25mn8xdi3zkzmm8m7qd9a6vjdlz5j7ig2gc9f2y2d"; depends=[GJRM mice mvtnorm pbivnorm sampleSelection]; broken = true; }; migrbc = derive2 { name="migrbc"; version="2.0.9"; sha256="1nbxdm70a9lvbp4sw78719hdpbqnziw1y7r4xk8i390q2c195am1"; depends=[dplyr futile_logger lubridate Rcpp stringr]; broken = true; }; miraculix = derive2 { name="miraculix"; version="0.9.23"; sha256="0i08v5hq43296k3sa7akpq4h5dmvpkgn7cfpqwdyp0qaxkqk0k0s"; depends=[RandomFieldsUtils]; broken = true; }; mixlink = derive2 { name="mixlink"; version="0.1.5"; sha256="0ywgrcplhspc0x5fniw52xqz20y7j9mwgy4ky8lv3vii659mr52m"; depends=[mvtnorm numDeriv Rcpp RcppGSL]; broken = true; }; @@ -18501,6 +18554,7 @@ in with self; { mosaic_find = derive2 { name="mosaic.find"; version="0.1.2"; sha256="1fzgksh8sp701qjfrvjl2bg967qjkjpilxsfkrazhw71cgmzjgjl"; depends=[minpack_lm]; broken = true; }; mvst = derive2 { name="mvst"; version="1.1.0"; sha256="03q0kdychsmn4wcn50b6dqhxn4f2mjvrr5rac942xdv75w8qklc9"; depends=[MCMCpack mnormt mvtnorm]; broken = true; }; nCal = derive2 { name="nCal"; version="2021.9-12"; sha256="133dpy2rp8sabwdlk0wjxs9rzixzcja73im94qaw26z5xsnaydhf"; depends=[drc gdata gWidgets2 kyotil]; broken = true; }; + nearfar = derive2 { name="nearfar"; version="1.2"; sha256="116rq797a5fascirz8xg465fywjf40j1k5czryvqzpik0if0w00r"; depends=[car GenSA MASS nbpMatching]; broken = true; }; npphen = derive2 { name="npphen"; version="1.1-0"; sha256="0pbf9sqdapl5q09g1hj5hi4j2wigrd0b6s0gbv1gx4wn68alrals"; depends=[ks lubridate raster rgdal rts snow]; broken = true; }; ntwk = derive2 { name="ntwk"; version="1.0.0"; sha256="1c12c3pq992f02z3ikx17zv2djq9d9ly232ha0j5jswsksqzx024"; depends=[assertthat copCAR ghyp Matrix mvtnorm pracma zoo]; broken = true; }; oc = derive2 { name="oc"; version="1.2"; sha256="0cw1gvz6gk8j718zmywqp03h9cnzn132nwbv45gr00xg2s9h7dk7"; depends=[pscl]; broken = true; }; @@ -18513,6 +18567,8 @@ in with self; { pbdSLAP = derive2 { name="pbdSLAP"; version="0.3-1"; sha256="1iwc5iw6q7r6p08yngczqlbqk779nsx2rmxc3fajzl6d73rprshl"; depends=[pbdMPI rlecuyer]; broken = true; }; pedometrics = derive2 { name="pedometrics"; version="0.7.0"; sha256="0rqldc67yrcg16i5q9wrmfmh3lw3qrfdxwdb4mxkjxx18v4fv737"; depends=[lattice latticeExtra Rcpp]; broken = true; }; permGPU = derive2 { name="permGPU"; version="0.15"; sha256="1bxydc5dw7ka45k6ban35d5xb1dw9yq9480qns8b39cc0x3acmhc"; depends=[Biobase foreach RUnit survival]; broken = true; }; + phreeqc = derive2 { name="phreeqc"; version="3.6.3"; sha256="0z20gj1kqhnbvx33sswz5ivj7nk2p4hia4gr2npscs94nc50b5j4"; depends=[]; broken = true; }; + plfMA = derive2 { name="plfMA"; version="1.0.5"; sha256="13hs06n4b28vlik9bzqdx6j85q05bsd6hb10cr39581a3m33rv5m"; depends=[cairoDevice gWidgets2 gWidgets2RGtk2 limma RGtk2]; broken = true; }; pm4py = derive2 { name="pm4py"; version="1.2.7"; sha256="11xbsmsc9pxd98fy28l3nxzhb6c2pwvh1gmm34jnqn0rjbpb2n9i"; depends=[bupaR petrinetR purrr reticulate stringr]; broken = true; }; pmdplyr = derive2 { name="pmdplyr"; version="0.3.3"; sha256="1grnqqydi84hnig1522lv4xbh9ds32wnq7sha7jn1q4186wlz1qa"; depends=[dplyr lubridate magrittr pillar rlang tibble tidyr tidyselect vctrs]; broken = true; }; podr = derive2 { name="podr"; version="0.0.5"; sha256="135nq0dw1x6ngf6mxy3yds3xsxhaf5rnv1cmhavlrklhdfygc0a4"; depends=[assertthat DBI dplyr lubridate magrittr odbc plogr RPostgres rstudioapi shiny stringr tibble]; broken = true; }; @@ -18525,32 +18581,32 @@ in with self; { rabhit = derive2 { name="rabhit"; version="0.1.5"; sha256="0dqzcv241g2b2slygq87w4qkdxalr58zs61k7485b8745xansxmv"; depends=[alakazam cowplot data_table dendextend dplyr fastmatch ggdendro ggplot2 gridExtra gtable gtools htmlwidgets plotly plyr RColorBrewer reshape2 rlang splitstackshape stringi tidyr tigger]; broken = true; }; rawr = derive2 { name="rawr"; version="0.1.3"; sha256="0k0x1pmxs73j6dmjg33n4hhwjwzpnhzbmmmjza6kw7hj6lfmipx4"; depends=[clipr dplyr jsonlite rvest stringr xml2]; broken = true; }; rdaemon = derive2 { name="rdaemon"; version="1.0.6"; sha256="1qr6v7kgk9nd5qp96667x51331xmpp1yz1r190dgd1fqigw735s5"; depends=[base64enc futile_logger Rcpp]; broken = true; }; + rgho = derive2 { name="rgho"; version="2.0.1"; sha256="1byvq2swn2j9v0zy5smjklv7bkncrclhli62cf1f2wiah5qg8sv2"; depends=[curl dplyr httr jsonlite lazyeval magrittr memoise readr rlang tibble tidyr]; broken = true; }; rijkspalette = derive2 { name="rijkspalette"; version="1.0.2"; sha256="00726q8s36si08ghd9sgi7ikadcj11xqwhgv8f3cml6lvwz7ppzz"; depends=[crayon imager jsonlite]; broken = true; }; + sara4r = derive2 { name="sara4r"; version="0.0.8"; sha256="0b8ir25f0348pd2ckwzv1pyz3iz98zy09baih3rkgxxn8hjdnxj7"; depends=[raster rgdal RGtk2 sp]; broken = true; }; seedwater = derive2 { name="seedwater"; version="2.0"; sha256="1q6q612245hqqx89jzlp77f73vj2baxi0bghd9l8kpjz4ydh6rv8"; depends=[rpanel]; broken = true; }; - semantic_dashboard = derive2 { name="semantic.dashboard"; version="0.2.0"; sha256="0i9l8s19bw5xj4dzq932j0lzldg725zwcxnnda9p8gp0fimkb3d2"; depends=[checkmate glue htmltools shiny shiny_semantic]; broken = true; }; - shiny_semantic = derive2 { name="shiny.semantic"; version="0.4.2"; sha256="0ndjp8c3c8kci8rzhj4bg1zpgwzcilgbjplx0sr2hii87lpi0v2j"; depends=[glue htmltools htmlwidgets jsonlite magrittr purrr R6 shiny]; broken = true; }; shinyypr = derive2 { name="shinyypr"; version="0.0.2"; sha256="1k6jsw6gnpwk90hkpa9grki0b68cab57vbd0h6ldjqr11giwcz8z"; depends=[bsplus chk dplyr DT ggplot2 lifecycle magrittr purrr readr shiny shinyjs waiter ypr]; broken = true; }; simLife = derive2 { name="simLife"; version="0.5.2"; sha256="1dhrjszfgxr0j4dkc2bwykyj515ji5rkb572nmnyjgkyi652j01v"; depends=[splancs]; broken = true; }; simba = derive2 { name="simba"; version="0.3-5"; sha256="14kqxqavacckl5s1518iiwzrmlgbxz1lxy33y8c9qq7xaln41g9h"; depends=[vegan]; broken = true; }; - sitree = derive2 { name="sitree"; version="0.1-10"; sha256="1sspbzzr0xdzgx2n4yvj1vih952wz17qzk4vkjwpifbl8xkafw6v"; depends=[data_table ggplot2]; broken = true; }; sitreeE = derive2 { name="sitreeE"; version="0.0-7"; sha256="07x7p0rqkmjlf6lykx9ckh9dbwjqjkmszrhar1vmpy54i8gv3ha7"; depends=[data_table sitree]; broken = true; }; slga = derive2 { name="slga"; version="1.2.0"; sha256="0n96vqczpzc51ln2nraxz0846amasfbm541sy0wf0dsng283mh13"; depends=[httr raster s2 sf xml2]; broken = true; }; + smartR = derive2 { name="smartR"; version="0.62.3"; sha256="0ardb4arhr7qmr30b3ahf7hkwlys9i420bm8h2688phahgfkk0y8"; depends=[caret chron cluster foreign ggplot2 ggrepel ggthemes gridExtra gstat gsubfn gWidgets2 gWidgets2RGtk2 igraph jpeg jsonlite lattice mapdata mapproj maps maptools marmap mtsdi nnls PBSmapping plyr R6 RColorBrewer reshape2 rgdal rgeos rjags ROCR rpart scales shape sp spdep sqldf vegan]; broken = true; }; soilphysics = derive2 { name="soilphysics"; version="4.0"; sha256="0b4fkc1plmafjdlad7s4pvca6lafmrswwpfddvsh73734s7cslmq"; depends=[boot fields MASS shiny shinydashboard]; broken = true; }; spANOVA = derive2 { name="spANOVA"; version="0.99.3"; sha256="0w817zwbk6amh3n3j8wzjr15qqhfbk9s23c77b27iwcc5akdgbix"; depends=[ape car DT geoR gtools knitr MASS Matrix multcomp multcompView mvtnorm rmarkdown ScottKnott shiny shinyBS shinycssloaders shinythemes spatialreg spdep xtable]; broken = true; }; spate = derive2 { name="spate"; version="1.7"; sha256="1cr5jjrycfj9larsqgzfakk4qgfz8m5djg4ddzk6s3lg2iw06y43"; depends=[mvtnorm truncnorm]; broken = true; }; + spfilteR = derive2 { name="spfilteR"; version="1.1.1"; sha256="0y6jmg4iz584c35r6xs16z8zbs2z5y8g6wshnall7i6g2hv35nnj"; depends=[]; broken = true; }; spsann = derive2 { name="spsann"; version="2.2.0"; sha256="00nlrwk50ch128brzvfxld0pcpq1syks9rvwdrcf1i2pcxnva7d0"; depends=[pedometrics Rcpp sp SpatialTools]; broken = true; }; stratifyR = derive2 { name="stratifyR"; version="1.0-2"; sha256="10qlxkdbym206bvl2wc8ig00fvj1n7553vmjk6rs2n4p945qd47g"; depends=[actuar fitdistrplus mc2d triangle zipfR]; broken = true; }; supc = derive2 { name="supc"; version="0.2.5"; sha256="1qj7a1zcj3mf0a40anifjyq851yjksygrpj4vsf0dm4yfwl5viwx"; depends=[BH Rcpp]; broken = true; }; survRatio = derive2 { name="survRatio"; version="0.1"; sha256="1xrqin3q3b7r8ga4i71ci97rsm4lj5ffd0720n7s563jkpnpyb9l"; depends=[ggplot2 ggpubr gridExtra survival]; broken = true; }; tabulizer = derive2 { name="tabulizer"; version="0.2.2"; sha256="0zd5cfqwgirqchw1mvziscxvzl8pb1y6rbfywkn9i9pxfydkm5vi"; depends=[png rJava tabulizerjars]; broken = true; }; tabulizerjars = derive2 { name="tabulizerjars"; version="1.0.1"; sha256="005n2gyzzmq8h0mpj8xs6ri6llzwag7nqzpm4vnzp81vwy8kmf92"; depends=[rJava]; broken = true; }; - text2sdg = derive2 { name="text2sdg"; version="0.1.0"; sha256="1a4ms4bha7h8mrbjzv5rb3s4gc1s5s22x5c97ss82r9pdb2ynvck"; depends=[corpustools dplyr ggplot2 magrittr stringr tibble tidyr]; broken = true; }; + thectar = derive2 { name="thectar"; version="1.0.0"; sha256="1qh0qzg0ybb38kzm56xxlvhm201pdjm16aky5f1fdflcsszgy8mx"; depends=[proxy smacof]; broken = true; }; txshift = derive2 { name="txshift"; version="0.3.6"; sha256="16ffkzgy9x1ng6338mb4flg3xy3cc32lrhqmb7rgpzs2fb0h20zr"; depends=[assertthat data_table ggplot2 hal9001 haldensify latex2exp lspline mvtnorm Rdpack scales stringr]; broken = true; }; unfoldr = derive2 { name="unfoldr"; version="0.7.1"; sha256="1khas7d04g4y2kwldnsja5xk1n5mys2s66pln3l0gqlsbk67na12"; depends=[]; broken = true; }; usethis2 = derive2 { name="usethis2"; version="0.2.0"; sha256="0ljvfgwg73y71yvyz2pp4c1rzgiqk1x7kmgswxa1ay05zwdgyi0x"; depends=[microservices purrr usethis withr]; broken = true; }; viewshed3d = derive2 { name="viewshed3d"; version="4.0.0"; sha256="039xx39w3k3hckf0qci7j1364s47vja5s18siqjh6c5yy1w8q737"; depends=[data_table hyper_fit lidR nabor pkgcond plotrix pracma raster rgl sp viridis]; broken = true; }; vmsbase = derive2 { name="vmsbase"; version="2.2.1"; sha256="1xxn0vm9r8kiix6whlc12r0wanf6acrl9a86h44nwm019xfmlfyp"; depends=[AMORE cairoDevice chron cluster DBI ecodist fields foreign ggmap ggplot2 gmt gsubfn gWidgets2 gWidgets2RGtk2 intervals mapdata maps maptools marmap outliers PBSmapping plotrix R6 RSQLite sp sqldf VennDiagram]; broken = true; }; water = derive2 { name="water"; version="0.8"; sha256="0qglf922dlgi41jzz3sivq7ckmzl8axqjfg4klcgnddycmm3ha5j"; depends=[raster rgdal sp]; broken = true; }; - wnominate = derive2 { name="wnominate"; version="1.2.5"; sha256="0pvw36jzx90z7ah4f7cyf95csdn5x7n9rh3ddsppa61y1dmjsn5k"; depends=[pscl]; broken = true; }; x12GUI = derive2 { name="x12GUI"; version="0.13.0"; sha256="1mga7g9gwb3nv2qs27lz4n9rp6j3svads28hql88sxaif6is3nk1"; depends=[cairoDevice Hmisc lattice RGtk2 stringr x12]; broken = true; }; } From 5a7000ff2706297f68cb149b5c60cc9439655956 Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Wed, 17 Nov 2021 22:10:51 +1100 Subject: [PATCH 007/278] rPackages.buildRPackage: set built-timestamp to epoch --- pkgs/development/r-modules/generic-builder.nix | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pkgs/development/r-modules/generic-builder.nix b/pkgs/development/r-modules/generic-builder.nix index 7201bab40e12..880fff44ed64 100644 --- a/pkgs/development/r-modules/generic-builder.nix +++ b/pkgs/development/r-modules/generic-builder.nix @@ -36,7 +36,7 @@ stdenv.mkDerivation ({ installPhase = '' runHook preInstall mkdir -p $out/library - $rCommand CMD INSTALL $installFlags --configure-args="$configureFlags" -l $out/library . + $rCommand CMD INSTALL --built-timestamp='1970-01-01 00:00:00 UTC' $installFlags --configure-args="$configureFlags" -l $out/library . runHook postInstall ''; From 851495a752f9f631cf47637df1d6e7a301920ba4 Mon Sep 17 00:00:00 2001 From: Will Fancher Date: Sat, 20 Nov 2021 12:34:13 -0500 Subject: [PATCH 008/278] Move systemd-lib.nix and systemd-unit-options.nix into utils --- nixos/{modules/system/boot => lib}/systemd-lib.nix | 0 .../{modules/system/boot => lib}/systemd-unit-options.nix | 4 ++-- nixos/lib/utils.nix | 7 ++++++- nixos/modules/misc/extra-arguments.nix | 4 ++-- nixos/modules/security/systemd-confinement.nix | 6 ++---- nixos/modules/services/backup/restic.nix | 4 ++-- nixos/modules/system/boot/networkd.nix | 6 +++--- nixos/modules/system/boot/systemd-nspawn.nix | 6 +++--- nixos/modules/system/boot/systemd.nix | 4 ++-- 9 files changed, 22 insertions(+), 19 deletions(-) rename nixos/{modules/system/boot => lib}/systemd-lib.nix (100%) rename nixos/{modules/system/boot => lib}/systemd-unit-options.nix (99%) diff --git a/nixos/modules/system/boot/systemd-lib.nix b/nixos/lib/systemd-lib.nix similarity index 100% rename from nixos/modules/system/boot/systemd-lib.nix rename to nixos/lib/systemd-lib.nix diff --git a/nixos/modules/system/boot/systemd-unit-options.nix b/nixos/lib/systemd-unit-options.nix similarity index 99% rename from nixos/modules/system/boot/systemd-unit-options.nix rename to nixos/lib/systemd-unit-options.nix index 4154389b2ce5..01f954a4d3e0 100644 --- a/nixos/modules/system/boot/systemd-unit-options.nix +++ b/nixos/lib/systemd-unit-options.nix @@ -1,7 +1,7 @@ -{ config, lib }: +{ lib, systemdUtils }: +with systemdUtils.lib; with lib; -with import ./systemd-lib.nix { inherit config lib pkgs; }; let checkService = checkUnitConfig "Service" [ diff --git a/nixos/lib/utils.nix b/nixos/lib/utils.nix index f1fa9f07a974..bbebf8ba35a0 100644 --- a/nixos/lib/utils.nix +++ b/nixos/lib/utils.nix @@ -1,4 +1,4 @@ -pkgs: with pkgs.lib; +{ lib, config, pkgs }: with lib; rec { @@ -165,4 +165,9 @@ rec { ${builtins.toJSON set} EOF ''; + + systemdUtils = { + lib = import ./systemd-lib.nix { inherit lib config pkgs; }; + unitOptions = import ./systemd-unit-options.nix { inherit lib systemdUtils; }; + }; } diff --git a/nixos/modules/misc/extra-arguments.nix b/nixos/modules/misc/extra-arguments.nix index 8716e3d9fef2..48891b440498 100644 --- a/nixos/modules/misc/extra-arguments.nix +++ b/nixos/modules/misc/extra-arguments.nix @@ -1,7 +1,7 @@ -{ pkgs, ... }: +{ lib, config, pkgs, ... }: { _module.args = { - utils = import ../../lib/utils.nix pkgs; + utils = import ../../lib/utils.nix { inherit lib config pkgs; }; }; } diff --git a/nixos/modules/security/systemd-confinement.nix b/nixos/modules/security/systemd-confinement.nix index d859c45c74f7..0e3ec5af323e 100644 --- a/nixos/modules/security/systemd-confinement.nix +++ b/nixos/modules/security/systemd-confinement.nix @@ -1,11 +1,9 @@ -{ config, pkgs, lib, ... }: +{ config, pkgs, lib, utils, ... }: let toplevelConfig = config; inherit (lib) types; - inherit (import ../system/boot/systemd-lib.nix { - inherit config pkgs lib; - }) mkPathSafeName; + inherit (utils.systemdUtils.lib) mkPathSafeName; in { options.systemd.services = lib.mkOption { type = types.attrsOf (types.submodule ({ name, config, ... }: { diff --git a/nixos/modules/services/backup/restic.nix b/nixos/modules/services/backup/restic.nix index 67fef55614b3..8ff8e31864be 100644 --- a/nixos/modules/services/backup/restic.nix +++ b/nixos/modules/services/backup/restic.nix @@ -1,10 +1,10 @@ -{ config, lib, pkgs, ... }: +{ config, lib, pkgs, utils, ... }: with lib; let # Type for a valid systemd unit option. Needed for correctly passing "timerConfig" to "systemd.timers" - unitOption = (import ../../system/boot/systemd-unit-options.nix { inherit config lib; }).unitOption; + inherit (utils.systemdUtils.unitOptions) unitOption; in { options.services.restic.backups = mkOption { diff --git a/nixos/modules/system/boot/networkd.nix b/nixos/modules/system/boot/networkd.nix index 2e17bdf6bb65..28060be2c3cf 100644 --- a/nixos/modules/system/boot/networkd.nix +++ b/nixos/modules/system/boot/networkd.nix @@ -1,8 +1,8 @@ -{ config, lib, pkgs, ... }: +{ config, lib, pkgs, utils, ... }: +with utils.systemdUtils.unitOptions; +with utils.systemdUtils.lib; with lib; -with import ./systemd-unit-options.nix { inherit config lib; }; -with import ./systemd-lib.nix { inherit config lib pkgs; }; let diff --git a/nixos/modules/system/boot/systemd-nspawn.nix b/nixos/modules/system/boot/systemd-nspawn.nix index b450d77429b2..02d2660add89 100644 --- a/nixos/modules/system/boot/systemd-nspawn.nix +++ b/nixos/modules/system/boot/systemd-nspawn.nix @@ -1,8 +1,8 @@ -{ config, lib , pkgs, ...}: +{ config, lib, pkgs, utils, ...}: +with utils.systemdUtils.unitOptions; +with utils.systemdUtils.lib; with lib; -with import ./systemd-unit-options.nix { inherit config lib; }; -with import ./systemd-lib.nix { inherit config lib pkgs; }; let cfg = config.systemd.nspawn; diff --git a/nixos/modules/system/boot/systemd.nix b/nixos/modules/system/boot/systemd.nix index 8fcf62d7fbff..c2ad043b789b 100644 --- a/nixos/modules/system/boot/systemd.nix +++ b/nixos/modules/system/boot/systemd.nix @@ -1,9 +1,9 @@ { config, lib, pkgs, utils, ... }: with utils; +with systemdUtils.unitOptions; +with systemdUtils.lib; with lib; -with import ./systemd-unit-options.nix { inherit config lib; }; -with import ./systemd-lib.nix { inherit config lib pkgs; }; let From 257f13b85fc27da87db07b63d48950b6e23be9ad Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Sun, 21 Nov 2021 10:37:28 +1100 Subject: [PATCH 009/278] rPackages: disable hydra on annotations/experiments --- pkgs/development/r-modules/default.nix | 7 +++++-- 1 file changed, 5 insertions(+), 2 deletions(-) diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index 7d2e17c078e5..291db6973dce 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -15,14 +15,15 @@ let # # some packages, e.g. cncaGUI, require X running while installation, # so that we use xvfb-run if requireX is true. - mkDerive = {mkHomepage, mkUrls}: args: + mkDerive = {mkHomepage, mkUrls, hydraPlatforms ? R.meta.platforms}: args: + let hydraPlatforms' = hydraPlatforms; in lib.makeOverridable ({ name, version, sha256, depends ? [], doCheck ? true, requireX ? false, broken ? false, - hydraPlatforms ? R.meta.platforms, + hydraPlatforms ? hydraPlatforms', maintainers ? [] }: buildRPackage { name = "${name}-${version}"; @@ -56,12 +57,14 @@ let mkUrls = {name, version, biocVersion}: [ "mirror://bioc/${biocVersion}/data/annotation/src/contrib/${name}_${version}.tar.gz" ]; + hydraPlatforms = []; }; deriveBiocExp = mkDerive { mkHomepage = {name, ...}: "http://www.bioconductor.org/packages/${name}.html"; mkUrls = {name, version, biocVersion}: [ "mirror://bioc/${biocVersion}/data/experiment/src/contrib/${name}_${version}.tar.gz" ]; + hydraPlatforms = []; }; deriveCran = mkDerive { mkHomepage = {name, snapshot, ...}: "http://mran.revolutionanalytics.com/snapshot/${snapshot}/web/packages/${name}/"; From 69bf9264a87afc4acc5813d985072fad28ef160e Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Sun, 21 Nov 2021 11:21:36 +1100 Subject: [PATCH 010/278] rPackages.{canceR,RcmdrPlugin_FuzzyClust,RcmdrPlugin_PcaRobust,uHMM}: fix build --- pkgs/development/r-modules/default.nix | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index 291db6973dce..d1df6abd2aa1 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -656,6 +656,7 @@ let "biplotbootGUI" "blender" "cairoDevice" + "canceR" "CCTpack" "cncaGUI" "cocorresp" @@ -764,6 +765,7 @@ let "RcmdrPlugin_EcoVirtual" "RcmdrPlugin_EZR" "RcmdrPlugin_FactoMineR" + "RcmdrPlugin_FuzzyClust" "RcmdrPlugin_HH" "RcmdrPlugin_IPSUR" "RcmdrPlugin_KMggplot2" @@ -771,6 +773,7 @@ let "RcmdrPlugin_MA" "RcmdrPlugin_MPAStats" "RcmdrPlugin_orloca" + "RcmdrPlugin_PcaRobust" "RcmdrPlugin_plotByGroup" "RcmdrPlugin_pointG" "RcmdrPlugin_ROC" @@ -819,6 +822,7 @@ let "tspmeta" "TTAinterfaceTrendAnalysis" "twiddler" + "uHMM" "vcdExtra" "VecStatGraphs3D" "vegan" From 502b9e7a1d969d0795d01d692186cea049a2a2fe Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Sun, 21 Nov 2021 11:26:25 +1100 Subject: [PATCH 011/278] rPackages.ChIPXpress: disable hydra Output is too large. --- pkgs/development/r-modules/default.nix | 2 ++ 1 file changed, 2 insertions(+) diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index d1df6abd2aa1..34a0c6059113 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -1276,6 +1276,8 @@ let patchShebangs configure ''; }); + + ChIPXpress = old.ChIPXpress.override { hydraPlatforms = []; }; }; in self From 113c1e3574001ed5718a52b89d5f6664c95cea90 Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Mon, 22 Nov 2021 19:13:00 +1100 Subject: [PATCH 012/278] rPackages.rgl: fix build --- pkgs/development/r-modules/default.nix | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index 34a0c6059113..a88f9635793b 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -788,7 +788,6 @@ let "RcmdrPlugin_UCA" "recluster" "relimp" - "rgl" "RHRV" "rich" "RNCEP" @@ -886,7 +885,6 @@ let # Packages which cannot be installed due to lack of dependencies or other reasons. brokenPackages = [ "av" - "rgl" "NetLogoR" "x13binary" "valse" @@ -1278,6 +1276,10 @@ let }); ChIPXpress = old.ChIPXpress.override { hydraPlatforms = []; }; + + rgl = old.rgl.overrideDerivation (attrs: { + RGL_USE_NULL = "true"; + }); }; in self From 679398b160ccb36674b2b21ccf79896daf2d9f70 Mon Sep 17 00:00:00 2001 From: talyz Date: Fri, 26 Nov 2021 13:39:50 +0100 Subject: [PATCH 013/278] nodejs: Provide a static v8 library output Since building nodejs also builds v8, one way to get a static v8 library is to manually assemble it from the leftover object files. This seems like an easier way to get an up-to-date v8 library than trying to keep the v8 package updated. --- pkgs/development/web/nodejs/nodejs.nix | 33 ++++++++++++++++++++++++++ 1 file changed, 33 insertions(+) diff --git a/pkgs/development/web/nodejs/nodejs.nix b/pkgs/development/web/nodejs/nodejs.nix index 3f0f0e78e07a..56c83e38c4ff 100644 --- a/pkgs/development/web/nodejs/nodejs.nix +++ b/pkgs/development/web/nodejs/nodejs.nix @@ -58,6 +58,10 @@ let nativeBuildInputs = [ which pkg-config python ] ++ optionals stdenv.isDarwin [ xcbuild ]; + outputs = [ "out" "libv8" ]; + setOutputFlags = false; + moveToDev = false; + configureFlags = let isCross = stdenv.hostPlatform != stdenv.buildPlatform; inherit (stdenv.hostPlatform) gcc isAarch32; @@ -130,6 +134,35 @@ let # install the missing headers for node-gyp cp -r ${concatStringsSep " " copyLibHeaders} $out/include/node + + # assemble a static v8 library and put it in the 'libv8' output + mkdir -p $libv8/lib + pushd out/Release/obj.target + find . -path "./torque_*/**/*.o" -or -path "./v8*/**/*.o" | sort -u >files + ${if stdenv.buildPlatform.isGnu then '' + ar -cqs $libv8/lib/libv8.a @files + '' else '' + cat files | while read -r file; do + ar -cqS $libv8/lib/libv8.a $file + done + ''} + popd + + # copy v8 headers + cp -r deps/v8/include $libv8/ + + # create a pkgconfig file for v8 + major=$(grep V8_MAJOR_VERSION deps/v8/include/v8-version.h | cut -d ' ' -f 3) + minor=$(grep V8_MINOR_VERSION deps/v8/include/v8-version.h | cut -d ' ' -f 3) + patch=$(grep V8_PATCH_LEVEL deps/v8/include/v8-version.h | cut -d ' ' -f 3) + mkdir -p $libv8/lib/pkgconfig + cat > $libv8/lib/pkgconfig/v8.pc << EOF + Name: v8 + Description: V8 JavaScript Engine + Version: $major.$minor.$patch + Libs: -L$libv8/lib -lv8 -pthread -licui18n + Cflags: -I$libv8/include + EOF '' + optionalString (stdenv.isDarwin && enableNpm) '' sed -i 's/raise.*No Xcode or CLT version detected.*/version = "7.0.0"/' $out/lib/node_modules/npm/node_modules/node-gyp/gyp/pylib/gyp/xcode_emulation.py ''; From b9adefed54bafed3940510f4062427ca2738a8b4 Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Wed, 1 Dec 2021 13:13:40 +1100 Subject: [PATCH 014/278] rPackages: CRAN and BioC update --- .../r-modules/bioc-annotation-packages.nix | 6 +- .../r-modules/bioc-experiment-packages.nix | 8 +- pkgs/development/r-modules/bioc-packages.nix | 89 +- pkgs/development/r-modules/cran-packages.nix | 1067 +++++++++-------- 4 files changed, 645 insertions(+), 525 deletions(-) diff --git a/pkgs/development/r-modules/bioc-annotation-packages.nix b/pkgs/development/r-modules/bioc-annotation-packages.nix index dca3263dd41d..635926e72c17 100644 --- a/pkgs/development/r-modules/bioc-annotation-packages.nix +++ b/pkgs/development/r-modules/bioc-annotation-packages.nix @@ -336,7 +336,6 @@ in with self; { genomewidesnp6Crlmm = derive2 { name="genomewidesnp6Crlmm"; version="1.0.7"; sha256="16qcxa32fmbdcv5dck0grsnqyfcqql7wpxa1l6andv9hrvabv2jx"; depends=[]; }; gp53cdf = derive2 { name="gp53cdf"; version="2.18.0"; sha256="11p69rxia8bqajix3jg34vnhczyxgpq50k5kdh878h7bn0mpg6bj"; depends=[AnnotationDbi]; }; grasp2db = derive2 { name="grasp2db"; version="1.1.0"; sha256="1aq19myhcl9kdmzy8f4c3ilf0s0ng99rl58jja2xlmqsm2hik7ya"; depends=[AnnotationHub dbplyr digest dplyr GenomeInfoDb RSQLite]; }; - greengenes13_5MgDb = derive2 { name="greengenes13.5MgDb"; version="2.0.0"; sha256="0j4pd653vlfpd9gq6gi459lra8xhyknjrzadkx9d3zjy0hcwpj7r"; depends=[]; }; gwascatData = derive2 { name="gwascatData"; version="0.99.6"; sha256="1xhmzl06vivq8x01h60q3c4vql67wjgjfs35j4ifmixp1qhicgga"; depends=[data_table]; }; h10kcod_db = derive2 { name="h10kcod.db"; version="3.4.0"; sha256="0f30n339ib8q478a7axjdh8hzrqws762m680ha0sxm3a0nxwapgg"; depends=[AnnotationDbi org_Hs_eg_db]; }; h20kcod_db = derive2 { name="h20kcod.db"; version="3.4.0"; sha256="0csh59bgpn5xyaw6bfg7nvi9vcvjd4f66f0dr3xh7c6316835mnx"; depends=[AnnotationDbi org_Hs_eg_db]; }; @@ -847,7 +846,6 @@ in with self; { rhesuscdf = derive2 { name="rhesuscdf"; version="2.18.0"; sha256="0q2alkxm80wkzaf0q80df27q30qkswybavz05x6ywsihbs9h0nb8"; depends=[AnnotationDbi]; }; rhesusprobe = derive2 { name="rhesusprobe"; version="2.18.0"; sha256="0fd8pvwvpcmx41k80nbccjxllh39fvjf7l9dr8facisl1x7gsfil"; depends=[AnnotationDbi]; }; ri16cod_db = derive2 { name="ri16cod.db"; version="3.4.0"; sha256="1xz533vxjdyxx1wkks0kgk6b90sxs44iqcsvyds0xcm573bx8c6q"; depends=[AnnotationDbi org_Rn_eg_db]; }; - ribosomaldatabaseproject11_5MgDb = derive2 { name="ribosomaldatabaseproject11.5MgDb"; version="1.00.0"; sha256="04ppa4k8p54bmkq3jm41h0v4lb5hz95cmnakfzmqfml00ir04mxp"; depends=[]; }; ricecdf = derive2 { name="ricecdf"; version="2.18.0"; sha256="07lsw9rklk2rsvbkcj1ci8hg2x68k3qpkx9yw0cmd7rg5fvydgns"; depends=[AnnotationDbi]; }; riceprobe = derive2 { name="riceprobe"; version="2.18.0"; sha256="0w6qvszdmnipn3v2bld46x7my2a9hni0jbxd0y1d6xcrrgs951ra"; depends=[AnnotationDbi]; }; rnu34_db = derive2 { name="rnu34.db"; version="3.13.0"; sha256="155spriq65xpvf1wjw632jsfabzd4lm06l8qqzhs70qqjbnlkln0"; depends=[AnnotationDbi org_Rn_eg_db]; }; @@ -862,7 +860,6 @@ in with self; { saureuscdf = derive2 { name="saureuscdf"; version="2.18.0"; sha256="0vmm3fy10dzzmaq22ah4fb0k3fs1gdbhnsi8mxz7xgp27dcan29j"; depends=[AnnotationDbi]; }; saureusprobe = derive2 { name="saureusprobe"; version="2.18.0"; sha256="0s5ma3hh7ncsi4dq33r3hwffk85x3gvjbm5cslppbsd0r0bjwkia"; depends=[AnnotationDbi]; }; scAnnotatR_models = derive2 { name="scAnnotatR.models"; version="0.99.10"; sha256="1mj23jyakx5bss4v8lb66ri67ajcxk9kzfp8ya8vsbhkx5npqgl4"; depends=[]; }; - silva128_1MgDb = derive2 { name="silva128.1MgDb"; version="1.00.0"; sha256="0pwwxxa55d3919rbczg5iskd03ignimk80m52kfi930b1kdg9qc2"; depends=[]; }; soybeancdf = derive2 { name="soybeancdf"; version="2.18.0"; sha256="1dlwxdslm827661z6f4z2hwr7wpwqfzvizhvv63p86ll7l6gs3s8"; depends=[AnnotationDbi]; }; soybeanprobe = derive2 { name="soybeanprobe"; version="2.18.0"; sha256="06dpwqad7q3wyq0bsgpwkw8kx1gq5fy1s1lw632xrvgcid2fsmf8"; depends=[AnnotationDbi]; }; sugarcanecdf = derive2 { name="sugarcanecdf"; version="2.18.0"; sha256="0wghc6wr7iwkql63m3wibjjdcdpqd53z0g5rxdh553sjb0ca2n7z"; depends=[AnnotationDbi]; }; @@ -997,4 +994,7 @@ in with self; { MeSH_Xtr_eg_db = derive2 { name="MeSH.Xtr.eg.db"; version="1.15.1"; sha256="19waylyzyga4zqygar6509gq36a8z36fbpz55msb0zsin24s0y82"; depends=[MeSHDbi]; broken = true; }; MeSH_Zma_eg_db = derive2 { name="MeSH.Zma.eg.db"; version="1.15.1"; sha256="0plldymwirg8hyj9yv5jw4ldrlnvf5dx60gymb8rgmmxvrmhay66"; depends=[MeSHDbi]; broken = true; }; MeSH_db = derive2 { name="MeSH.db"; version="1.15.1"; sha256="0ixlxcakcc9f6d3dzxfdda4nh5gnivqvbi9dw7c85c0145dgnpzx"; depends=[MeSHDbi]; broken = true; }; + greengenes13_5MgDb = derive2 { name="greengenes13.5MgDb"; version="2.0.0"; sha256="0j4pd653vlfpd9gq6gi459lra8xhyknjrzadkx9d3zjy0hcwpj7r"; depends=[]; broken = true; }; + ribosomaldatabaseproject11_5MgDb = derive2 { name="ribosomaldatabaseproject11.5MgDb"; version="1.00.0"; sha256="04ppa4k8p54bmkq3jm41h0v4lb5hz95cmnakfzmqfml00ir04mxp"; depends=[]; broken = true; }; + silva128_1MgDb = derive2 { name="silva128.1MgDb"; version="1.00.0"; sha256="0pwwxxa55d3919rbczg5iskd03ignimk80m52kfi930b1kdg9qc2"; depends=[]; broken = true; }; } diff --git a/pkgs/development/r-modules/bioc-experiment-packages.nix b/pkgs/development/r-modules/bioc-experiment-packages.nix index 3d40d9cad990..b5ccda70d474 100644 --- a/pkgs/development/r-modules/bioc-experiment-packages.nix +++ b/pkgs/development/r-modules/bioc-experiment-packages.nix @@ -22,7 +22,7 @@ in with self; { AssessORFData = derive2 { name="AssessORFData"; version="1.12.0"; sha256="0v9xlm2wxlarbhj57jacn52hlxxylyfmr1gwmkss2pzw3hjyi4v1"; depends=[DECIPHER]; }; BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.32.0"; sha256="1zl54rg50v1m19fln1j1a3a22xi989sj8kk7ccjjgjhybsrvyi0r"; depends=[beadarray GEOquery limma]; }; BeadSorted_Saliva_EPIC = derive2 { name="BeadSorted.Saliva.EPIC"; version="1.2.0"; sha256="0fmjqwwnxlfpwl6ldhq92w9cxf4x4fcm349xk3jx8q8mj20zfsm1"; depends=[ExperimentHub minfi]; }; - BioImageDbs = derive2 { name="BioImageDbs"; version="1.2.0"; sha256="0ldpbjdj5xhh7sxkjrxgp7b5yayfjvw5yah4dxgbrmw37hqssd3q"; depends=[animation EBImage einsum ExperimentHub filesstrings magick magrittr markdown rmarkdown]; }; + BioImageDbs = derive2 { name="BioImageDbs"; version="1.2.2"; sha256="19wb8lzm11lyiiv1a57vgzpgzbnlm8s61bipqdaxpf7b5baajnwq"; depends=[animation AnnotationHub EBImage einsum ExperimentHub filesstrings magick magrittr markdown rmarkdown]; }; BloodCancerMultiOmics2017 = derive2 { name="BloodCancerMultiOmics2017"; version="1.14.0"; sha256="1nx55qhkkjvmljby04wn0fmbgcrdmqxqgxf5h4dasw884msfha4d"; depends=[beeswarm Biobase DESeq2 devtools dplyr ggdendro ggplot2 glmnet gtable ipflasso RColorBrewer reshape2 scales SummarizedExperiment survival tibble]; }; CCl4 = derive2 { name="CCl4"; version="1.32.0"; sha256="1ljjj2fk4cji4aw2j8kf4rjgfjfbdyg8sfhvahvpyqgqwvmsmdx5"; depends=[Biobase limma]; }; CLL = derive2 { name="CLL"; version="1.34.0"; sha256="017kjpv5rqn6vg3d4drnxj7arjxqw1hw1lxx9p0bdzr2isahcs6g"; depends=[affy Biobase]; }; @@ -138,7 +138,7 @@ in with self; { OMICsPCAdata = derive2 { name="OMICsPCAdata"; version="1.12.0"; sha256="1l4rmfdcfafh8pyvz8bsl4rm3859c8ckzw9kv2dc82djgk0b2lcq"; depends=[MultiAssayExperiment]; }; ObMiTi = derive2 { name="ObMiTi"; version="1.2.0"; sha256="131n0q34xizcw21sjrxcf185qfpxfc8m4xypmp812151f886p405"; depends=[ExperimentHub SummarizedExperiment]; }; OnassisJavaLibs = derive2 { name="OnassisJavaLibs"; version="1.16.0"; sha256="0hw0djfc8bfk51np4x7ik8nr2dscn5wd7gvbr0564yfz2ilf8l6v"; depends=[rJava]; }; - PCHiCdata = derive2 { name="PCHiCdata"; version="1.22.0"; sha256="0hk7fwh456xmlfgdgp6wsdn38v1g8b18f28f0wswgxxg1hy4mhih"; depends=[Chicago]; }; + PCHiCdata = derive2 { name="PCHiCdata"; version="1.22.1"; sha256="00902qv6vbhyv36ra3hfyqjf1pg202sv9274pm9dmp2gdmypdw1m"; depends=[Chicago]; }; PREDAsampledata = derive2 { name="PREDAsampledata"; version="0.34.0"; sha256="1gkjsh0xyn27jrxldkcgyvwpa2b2l81k96j2cls3y4dm9r39g637"; depends=[affy annotate Biobase PREDA]; }; PWMEnrich_Dmelanogaster_background = derive2 { name="PWMEnrich.Dmelanogaster.background"; version="4.28.0"; sha256="0fagxhzqr2ri1w93yr7ch1x9d55q8305cfj62gcxkzpi61j8nx1y"; depends=[PWMEnrich]; }; PWMEnrich_Hsapiens_background = derive2 { name="PWMEnrich.Hsapiens.background"; version="4.28.0"; sha256="1pmij8f40ly40prcmcjb7xfd5fpw14s77wvf1nn2vnvq7v232zva"; depends=[PWMEnrich]; }; @@ -262,7 +262,7 @@ in with self; { curatedBladderData = derive2 { name="curatedBladderData"; version="1.30.0"; sha256="0jv7aflam2gfzj8snf7dly26zq9c6gj764zb6fk0z9lb8wk4arxg"; depends=[affy]; }; curatedBreastData = derive2 { name="curatedBreastData"; version="2.22.0"; sha256="0jnjhlw3b27521jmbbq4m0lq388m1g09lfhqfri3hbvrayk19pn6"; depends=[Biobase BiocStyle ggplot2 impute XML]; }; curatedCRCData = derive2 { name="curatedCRCData"; version="2.26.0"; sha256="0gpkfff5k4mh96d6q5s2iwba7pfkp5wjl3nxhg3sm0vryrj0w8s0"; depends=[BiocGenerics nlme]; }; - curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="3.2.1"; sha256="0dd5b3b7fv75rwmv4ipz84nw8zx9pq4q5fd39fyklfdr5n7jm9qq"; depends=[AnnotationHub dplyr ExperimentHub magrittr mia purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect TreeSummarizedExperiment]; }; + curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="3.2.2"; sha256="1ir416wzh373cvcx1jdfqi0abpz3cgk6x40mcrgwsynzcfrqql7q"; depends=[AnnotationHub dplyr ExperimentHub magrittr mia purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect TreeSummarizedExperiment]; }; curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.32.0"; sha256="171m6j6wq5w7n68xzjf34shqhw1360cmzfh5q2al71jsh8lrw77x"; depends=[affy BiocGenerics]; }; curatedTBData = derive2 { name="curatedTBData"; version="1.0.0"; sha256="0cbs8pkr4zlpvdmq1zsxyh47lkbgpf0ppbv8y653arryb4knficl"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment rlang]; }; curatedTCGAData = derive2 { name="curatedTCGAData"; version="1.16.0"; sha256="0d7id11liv55xj0n8gk0587p6kjwm5k22jgwf1f107y81zigpi3n"; depends=[AnnotationHub ExperimentHub HDF5Array MultiAssayExperiment S4Vectors SummarizedExperiment]; }; @@ -389,7 +389,7 @@ in with self; { signatureSearchData = derive2 { name="signatureSearchData"; version="1.8.0"; sha256="13xfdg3si14zmrbib691301hhxxj3d3xyfkab5l4skspzgpd64cx"; depends=[affy Biobase dplyr ExperimentHub limma magrittr R_utils rhdf5 signatureSearch]; }; simpIntLists = derive2 { name="simpIntLists"; version="1.30.0"; sha256="0q2lqfhsjncdj42hblrh389j2m47x26nn58s31s1448pddhrp7z1"; depends=[]; }; spatialDmelxsim = derive2 { name="spatialDmelxsim"; version="1.0.0"; sha256="1h5crcjrzapj5j31285ana48g3b2iscxwlzxxdx9i03jsl39dlp8"; depends=[ExperimentHub SummarizedExperiment]; }; - spatialLIBD = derive2 { name="spatialLIBD"; version="1.6.0"; sha256="0c1ayv3mf31smmqfys85xjpadkavjixw545gkalibvxrkxmq0qb3"; depends=[AnnotationHub benchmarkme BiocFileCache cowplot DT ExperimentHub fields ggplot2 golem IRanges jsonlite plotly png Polychrome RColorBrewer S4Vectors scater sessioninfo shiny shinyWidgets SingleCellExperiment SpatialExperiment SummarizedExperiment tibble viridisLite]; }; + spatialLIBD = derive2 { name="spatialLIBD"; version="1.6.1"; sha256="1hczv6ndc6dvybx9ii8r0pnfc3j4491hfha41z1vi9cvlpixx2gs"; depends=[AnnotationHub benchmarkme BiocFileCache BiocGenerics cowplot DT ExperimentHub fields GenomicRanges ggplot2 golem IRanges jsonlite magick Matrix plotly png Polychrome RColorBrewer rtracklayer S4Vectors scater sessioninfo shiny shinyWidgets SingleCellExperiment SpatialExperiment SummarizedExperiment tibble viridisLite]; }; spqnData = derive2 { name="spqnData"; version="1.6.0"; sha256="0dwmgwz88g8fzpa2nl2zs4y32wrlf4ca142d8siak14wl089nm4y"; depends=[SummarizedExperiment]; }; stemHypoxia = derive2 { name="stemHypoxia"; version="1.30.0"; sha256="05jly60gg5xr9511jlymzbpjysapfz2qq81rxhdz7cjbjkkgvykr"; depends=[]; }; stjudem = derive2 { name="stjudem"; version="1.34.0"; sha256="005wy7b8naaph9krsdw234sk8fprccclnj7y4rfrs2f3lbrw4b2g"; depends=[]; }; diff --git a/pkgs/development/r-modules/bioc-packages.nix b/pkgs/development/r-modules/bioc-packages.nix index 81b4a27ab9e3..d1d56ced5421 100644 --- a/pkgs/development/r-modules/bioc-packages.nix +++ b/pkgs/development/r-modules/bioc-packages.nix @@ -51,7 +51,7 @@ in with self; { AnnotationFilter = derive2 { name="AnnotationFilter"; version="1.18.0"; sha256="15fp1228yb06jm5cblvhw3qv9mlpbjfggaz2nvi3p46mby1vs64w"; depends=[GenomicRanges lazyeval]; }; AnnotationForge = derive2 { name="AnnotationForge"; version="1.36.0"; sha256="02wvni5q560idi6677g5f4md73z4qzjl5yycxv5dbvgbl2picisz"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl RSQLite S4Vectors XML]; }; AnnotationHub = derive2 { name="AnnotationHub"; version="3.2.0"; sha256="0ks8yzvvs2r66pb9687mkskf0n3wgvp7h92k83b0a1q32sca5wng"; depends=[AnnotationDbi BiocFileCache BiocGenerics BiocManager BiocVersion curl dplyr httr interactiveDisplayBase rappdirs RSQLite S4Vectors yaml]; }; - AnnotationHubData = derive2 { name="AnnotationHubData"; version="1.24.0"; sha256="19z7jsfmd4f154l6i270107pp5jqj4qqcl10ymfpx87w6i3jdy7w"; depends=[AnnotationDbi AnnotationForge AnnotationHub Biobase BiocCheck BiocGenerics BiocManager biocViews Biostrings DBI futile_logger GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges jsonlite OrganismDbi RCurl Rsamtools RSQLite rtracklayer S4Vectors XML]; }; + AnnotationHubData = derive2 { name="AnnotationHubData"; version="1.24.1"; sha256="008jkpqzk1dxrkmbpzyjnqyrdw7rb4ci88fmnn27arx6psbl096g"; depends=[AnnotationDbi AnnotationForge AnnotationHub Biobase BiocCheck BiocGenerics BiocManager biocViews Biostrings DBI futile_logger GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges jsonlite OrganismDbi RCurl Rsamtools RSQLite rtracklayer S4Vectors XML]; }; ArrayExpress = derive2 { name="ArrayExpress"; version="1.54.0"; sha256="1rfvycrjlw0x1sqjrmiyf8i7yjiwjqf8x83i7pfg78yg9k5sh9vi"; depends=[Biobase limma oligo XML]; }; ArrayExpressHTS = derive2 { name="ArrayExpressHTS"; version="1.44.0"; sha256="1mjnddy05y06bn25xcjdx8kz538z3k4gvyqrb1lg4z8593xaw40i"; depends=[Biobase BiocGenerics biomaRt Biostrings bitops edgeR GenomicRanges Hmisc IRanges R2HTML RColorBrewer Rhtslib rJava Rsamtools sampling sendmailR ShortRead snow svMisc XML]; }; AssessORF = derive2 { name="AssessORF"; version="1.12.0"; sha256="0rn2ijnpa8a6w2zv3cvm1s5bhcvzmb4xk18d96wjc60gxk51i5wy"; depends=[Biostrings DECIPHER GenomicRanges IRanges]; }; @@ -113,7 +113,7 @@ in with self; { BiocIO = derive2 { name="BiocIO"; version="1.4.0"; sha256="1qg6v961sbj7qwyjx4z720f6h0kq693p7gc8q99my7gqkbbcxrfr"; depends=[BiocGenerics S4Vectors]; }; BiocNeighbors = derive2 { name="BiocNeighbors"; version="1.12.0"; sha256="04in8l6j7frgm0a5dzphazfhn9cm8w775z5yir712jxa37mh1agr"; depends=[BiocParallel Matrix Rcpp RcppHNSW S4Vectors]; }; BiocOncoTK = derive2 { name="BiocOncoTK"; version="1.14.0"; sha256="1h5s6wbc5n5x5d28rynxpcmaklxdhf72g9gg9fy8cg77niipvxd9"; depends=[bigrquery car ComplexHeatmap curatedTCGAData DBI dplyr DT GenomicFeatures GenomicRanges ggplot2 ggpubr graph httr IRanges magrittr plyr Rgraphviz rjson S4Vectors scales shiny SummarizedExperiment]; }; - BiocParallel = derive2 { name="BiocParallel"; version="1.28.0"; sha256="0jqgbpjppwinzw100qhc42kc95znq6xanl26bi8m9cq7yggbpra6"; depends=[BH futile_logger snow]; }; + BiocParallel = derive2 { name="BiocParallel"; version="1.28.2"; sha256="0mq9cz7d0lfgq63yp4m3mw7wmji1pa3y78nlwpizs1f9d6f7y8vk"; depends=[BH futile_logger snow]; }; BiocPkgTools = derive2 { name="BiocPkgTools"; version="1.12.2"; sha256="1yz2sgx4xrnw22k3d6q6hkj213bnbb4hbr5ymxnmjnsz551s75ny"; depends=[BiocFileCache BiocManager biocViews dplyr DT gh graph htmltools htmlwidgets httr igraph jsonlite magrittr RBGL readr rlang rvest stringr tibble tidyr tidyselect xml2]; }; BiocSet = derive2 { name="BiocSet"; version="1.8.1"; sha256="1x5ar9byr85iap2x6y66j31fi17wr31awx1gl3z01sckp0dldx6w"; depends=[AnnotationDbi BiocIO dplyr KEGGREST ontologyIndex plyr rlang S4Vectors tibble tidyr]; }; BiocSingular = derive2 { name="BiocSingular"; version="1.10.0"; sha256="0dkh6a23qymjcynppmpp3k1mzpfadv8dqyz410pxkqsxig4ldd4n"; depends=[beachmat BiocGenerics BiocParallel DelayedArray irlba Matrix Rcpp rsvd S4Vectors ScaledMatrix]; }; @@ -134,7 +134,7 @@ in with self; { CAEN = derive2 { name="CAEN"; version="1.2.0"; sha256="0jxi9bgbb3dnhcgm93qx611bnl23s7lk9msmxqbnlyhjprmbsqnz"; depends=[PoiClaClu SummarizedExperiment]; }; CAFE = derive2 { name="CAFE"; version="1.30.0"; sha256="130jidd1jxlgkv3sq8bgqyrn51dhb9yf67dlnjhf7xbvlyvx179g"; depends=[affy annotate Biobase biovizBase GenomicRanges ggbio ggplot2 gridExtra IRanges]; }; CAGEfightR = derive2 { name="CAGEfightR"; version="1.14.0"; sha256="08v16d9al8l7a31sncwpi79i7770v5gr2bf2q7i07xxdsf496yr9"; depends=[assertthat BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicInteractions GenomicRanges Gviz InteractionSet IRanges Matrix pryr rtracklayer S4Vectors SummarizedExperiment]; }; - CAGEr = derive2 { name="CAGEr"; version="2.0.1"; sha256="1mhdiiy3mffd0ivmcc7fs28h98c4qhsd62c9xf3w0pv5diy1xv9f"; depends=[BiocGenerics BiocParallel BSgenome data_table DelayedArray DelayedMatrixStats formula_tools GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges KernSmooth memoise MultiAssayExperiment plyr reshape2 Rsamtools rtracklayer S4Vectors som stringdist stringi SummarizedExperiment vegan VGAM]; }; + CAGEr = derive2 { name="CAGEr"; version="2.0.2"; sha256="0s959bqgmafc2hwh42fwildq8h8wxvdiciimgpr71ka2p1vg9sk7"; depends=[BiocGenerics BiocParallel BSgenome data_table DelayedArray DelayedMatrixStats formula_tools GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges KernSmooth memoise MultiAssayExperiment plyr reshape2 Rsamtools rtracklayer S4Vectors som stringdist stringi SummarizedExperiment vegan VGAM]; }; CAMERA = derive2 { name="CAMERA"; version="1.50.0"; sha256="1mgdmzlbj8yhk6jmnqaw4xmss77v7csdajd240kiswvm1f317z3h"; depends=[Biobase graph Hmisc igraph RBGL xcms]; }; CARNIVAL = derive2 { name="CARNIVAL"; version="2.4.0"; sha256="10wbdjripgndfaqx2aysmqhc9v8i94db8bf0bb89csmvmnia68c6"; depends=[dplyr igraph lpSolve readr rjson rmarkdown stringr]; }; CATALYST = derive2 { name="CATALYST"; version="1.18.0"; sha256="15lah45lf16zh1ankbpjvz8zp38lldvq074nmvb99rhhqys2gbgi"; depends=[circlize ComplexHeatmap ConsensusClusterPlus cowplot data_table dplyr drc flowCore FlowSOM ggplot2 ggrepel ggridges gridExtra magrittr Matrix matrixStats nnls purrr RColorBrewer reshape2 Rtsne S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; }; @@ -239,7 +239,7 @@ in with self; { CytoML = derive2 { name="CytoML"; version="2.6.0"; sha256="16rgsc2dz5b8lm3ma8nh9wiknrdnvfjcsij7809rmcfs0gn1arcz"; depends=[base64enc BH Biobase corpcor cytolib data_table dplyr flowCore flowWorkspace ggcyto graph jsonlite lattice openCyto plyr RBGL Rcpp RcppArmadillo RcppParallel Rgraphviz Rhdf5lib RProtoBufLib RUnit tibble XML xml2 yaml]; }; CytoTree = derive2 { name="CytoTree"; version="1.3.0"; sha256="1nb17lhpzzqd3xvs4ccdc5kcm4jvgk7w66nyv3vd8s68d7cf9rnp"; depends=[Biobase BiocNeighbors cluster flowCore FlowSOM flowUtils ggplot2 gmodels igraph limma Matrix matrixStats mclust pheatmap prettydoc RANN Rcpp Rtsne scatterpie scatterplot3d stringr sva umap]; }; DAMEfinder = derive2 { name="DAMEfinder"; version="1.6.0"; sha256="0g47m8ac1rgllhfcbss0200m5jcrasns15x03db601m1jy37mcj8"; depends=[BiocGenerics Biostrings bumphunter cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges limma plyr readr reshape2 Rsamtools S4Vectors stringr SummarizedExperiment VariantAnnotation]; }; - DAPAR = derive2 { name="DAPAR"; version="1.26.0"; sha256="071dkv6x979wyl214wjllkacvs6izjwjkcxvqpzk9gwzlrs8h0hg"; depends=[AnnotationDbi apcluster Biobase Cairo cluster clusterProfiler cp4p DAPARdata dendextend diptest doParallel dplyr factoextra FactoMineR forcats foreach ggplot2 gplots graph highcharter igraph imp4p impute knitr lattice limma lme4 Matrix Mfuzz MSnbase multcomp norm openxlsx pcaMethods png preprocessCore purrr RColorBrewer readxl reshape2 scales siggenes stringr tibble tidyr tidyverse tmvtnorm vioplot visNetwork vsn]; }; + DAPAR = derive2 { name="DAPAR"; version="1.26.1"; sha256="1xkilz7smw6q4d0v9z13787h771ks454ma7bism9mm1rn0zdzw4n"; depends=[AnnotationDbi apcluster Biobase Cairo cluster clusterProfiler cp4p DAPARdata dendextend diptest doParallel dplyr factoextra FactoMineR forcats foreach ggplot2 gplots graph highcharter igraph imp4p impute knitr lattice limma lme4 Matrix Mfuzz MSnbase multcomp norm openxlsx pcaMethods png preprocessCore purrr RColorBrewer readxl reshape2 scales siggenes stringr tibble tidyr tidyverse tmvtnorm vioplot visNetwork vsn]; }; DART = derive2 { name="DART"; version="1.42.0"; sha256="1wxg3szgsqy33z4vp150w5kg2nxyxqs3az5vxbajz5z9q7fg3zrb"; depends=[igraph]; }; DECIPHER = derive2 { name="DECIPHER"; version="2.22.0"; sha256="0a9k3f70jmd17kxf1zjmdzrfjs0dmwfad2zgz6wihxh5s1shc8qm"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; }; DEComplexDisease = derive2 { name="DEComplexDisease"; version="1.14.0"; sha256="0qbmw70rqmfixrbnb2jzvvqi54j2rl6gy1bspb143gsadh8z2s9i"; depends=[BiocParallel ComplexHeatmap DESeq2 edgeR Rcpp SummarizedExperiment]; }; @@ -248,7 +248,7 @@ in with self; { DEGreport = derive2 { name="DEGreport"; version="1.30.0"; sha256="0zmqz8gvpbka5cnwxx7w00xjaxlhmrni1lvacnippy63lpl2w4sz"; depends=[Biobase BiocGenerics broom circlize cluster ComplexHeatmap ConsensusClusterPlus cowplot DESeq2 dplyr edgeR ggdendro ggplot2 ggrepel knitr lasso2 logging magrittr Nozzle_R1 psych RColorBrewer reshape rlang S4Vectors scales stringr SummarizedExperiment tibble tidyr]; }; DEGseq = derive2 { name="DEGseq"; version="1.48.0"; sha256="1bx6xj71k7126ckpr1b7dh1ndmb9yvp9wrrr8lyfcq5birgpf22n"; depends=[qvalue]; }; DEP = derive2 { name="DEP"; version="1.16.0"; sha256="122gxaslxl3q66ncqndkmnjf6kx2gkj880cf2khwivh58sg6y410"; depends=[assertthat circlize cluster ComplexHeatmap dplyr DT fdrtool ggplot2 ggrepel gridExtra imputeLCMD limma MSnbase purrr RColorBrewer readr rmarkdown shiny shinydashboard SummarizedExperiment tibble tidyr vsn]; }; - DEScan2 = derive2 { name="DEScan2"; version="1.14.0"; sha256="1nw1id97vnfmnj7249zh29176zjyh15lx1vbkcr6kxri4x115l4x"; depends=[BiocGenerics BiocParallel ChIPpeakAnno data_table DelayedArray GenomeInfoDb GenomicAlignments GenomicRanges glue IRanges plyr Rcpp RcppArmadillo rtracklayer S4Vectors SummarizedExperiment]; }; + DEScan2 = derive2 { name="DEScan2"; version="1.14.1"; sha256="017pxb1z1vflxcqbhc1vrdxw146rb50zgxzalpmh0njzc333v3j1"; depends=[BiocGenerics BiocParallel ChIPpeakAnno data_table DelayedArray GenomeInfoDb GenomicAlignments GenomicRanges glue IRanges plyr Rcpp RcppArmadillo rtracklayer S4Vectors SummarizedExperiment]; }; DESeq2 = derive2 { name="DESeq2"; version="1.34.0"; sha256="0whk29zrmv9mrlc4w5ghy0fd29v8hfr8jccwgrn59mf3mkmfb2b9"; depends=[Biobase BiocGenerics BiocParallel genefilter geneplotter GenomicRanges ggplot2 IRanges locfit Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; }; DEWSeq = derive2 { name="DEWSeq"; version="1.8.0"; sha256="1ggj4in0sj9wb367s19v56f0jnfdcsylndjwpp4j02kwmc2wfl0j"; depends=[BiocGenerics BiocParallel data_table DESeq2 GenomeInfoDb GenomicRanges R_utils S4Vectors SummarizedExperiment]; }; DEXSeq = derive2 { name="DEXSeq"; version="1.40.0"; sha256="1wd4bjd0a53s689yvb2lxzdiy0synh6ncfcly3cfw37kpdj8lds1"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools S4Vectors statmod stringr SummarizedExperiment]; }; @@ -268,7 +268,7 @@ in with self; { DNABarcodes = derive2 { name="DNABarcodes"; version="1.24.0"; sha256="07yaz98r18mjny1ilmfnjxcra7xpklnd183pw0kasvsri01ccwxg"; depends=[BH Matrix Rcpp]; }; DNAcopy = derive2 { name="DNAcopy"; version="1.68.0"; sha256="19ax431i97r49gh1232vf8mgmkvc6k26lnq44j3g10n6q01czswm"; depends=[]; }; DNAshapeR = derive2 { name="DNAshapeR"; version="1.22.0"; sha256="1ypkp03ciia9hj4hhh9dlkx4hsrivph2y3irxhyqn7wjgh6fmnnl"; depends=[Biostrings fields GenomicRanges Rcpp]; }; - DOSE = derive2 { name="DOSE"; version="3.20.0"; sha256="0hj5hn54g8a3gj4q9200bffcy9m1mvkiwbg60ysv1hxxbpi57kmv"; depends=[AnnotationDbi BiocParallel DO_db fgsea ggplot2 GOSemSim qvalue reshape2]; }; + DOSE = derive2 { name="DOSE"; version="3.20.1"; sha256="10kknaqz40pb6v0fcjzp12hfpi6k5kvlqnyxx1k3y0h0wdg8hs3n"; depends=[AnnotationDbi BiocParallel DO_db fgsea ggplot2 GOSemSim qvalue reshape2]; }; DRIMSeq = derive2 { name="DRIMSeq"; version="1.22.0"; sha256="0y2jb0hb633id038zmwnfny6h4ai77fdyy02f77vha1z8xg5nl02"; depends=[BiocGenerics BiocParallel edgeR GenomicRanges ggplot2 IRanges limma MASS reshape2 S4Vectors]; }; DSS = derive2 { name="DSS"; version="2.42.0"; sha256="1a6igpkics6lyv7cqcg4iakxrwk928ha7xv7yvn0j2yi9h2akqmi"; depends=[Biobase BiocParallel bsseq DelayedArray]; }; DTA = derive2 { name="DTA"; version="2.40.0"; sha256="195pmjs1yhlw241ha0v8jpd1fwmgd6pp6s8bhbhjinkwplinw2g1"; depends=[LSD scatterplot3d]; }; @@ -323,7 +323,7 @@ in with self; { ExCluster = derive2 { name="ExCluster"; version="1.12.0"; sha256="1fmijpvkn2qjwl8cqzwclybnfqyrdckxwfc6f1zird770bqyagjv"; depends=[GenomicRanges IRanges matrixStats Rsubread rtracklayer]; }; ExiMiR = derive2 { name="ExiMiR"; version="2.36.0"; sha256="1vf1241n6f0w7p8m8vwb30dlhybw5ddhp2bgwmn7ml6rfbkidmnk"; depends=[affy affyio Biobase limma preprocessCore]; }; ExperimentHub = derive2 { name="ExperimentHub"; version="2.2.0"; sha256="15las4qmqvrn81hczxa3ylikqh54kp1lg9r8rcyfvrx5l0kgwlfq"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocManager curl rappdirs S4Vectors]; }; - ExperimentHubData = derive2 { name="ExperimentHubData"; version="1.20.0"; sha256="16xmsq3li7g3qvrfif6yzj5p6qmna6lqfkf1z2bn7k6bpskid3w4"; depends=[AnnotationHubData BiocGenerics BiocManager curl DBI ExperimentHub httr S4Vectors]; }; + ExperimentHubData = derive2 { name="ExperimentHubData"; version="1.20.1"; sha256="12gnp7zh0ligpmgnd59gp6c3cdq9sz0nzzpskjkdf7kzn08mk41m"; depends=[AnnotationHubData BiocGenerics BiocManager curl DBI ExperimentHub httr S4Vectors]; }; ExperimentSubset = derive2 { name="ExperimentSubset"; version="1.4.0"; sha256="1ccz555f5mfvii99w66f076cb22f0ksjxmq9f6bsfxjzsbc7ssnh"; depends=[Matrix S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment TreeSummarizedExperiment]; }; ExploreModelMatrix = derive2 { name="ExploreModelMatrix"; version="1.6.0"; sha256="162g6zfdhr6gibyqkfwk4y2fd4wmbzwx1frf8rkw6m7ny3mc7s3g"; depends=[cowplot dplyr DT ggplot2 limma magrittr MASS rintrojs S4Vectors scales shiny shinydashboard shinyjs tibble tidyr]; }; ExpressionAtlas = derive2 { name="ExpressionAtlas"; version="1.22.0"; sha256="0y3gq8ffy527gnyhhqvwjd58a3df50b27d5fvnd37cjm36hk1sbr"; depends=[Biobase httr limma S4Vectors SummarizedExperiment XML xml2]; }; @@ -339,7 +339,7 @@ in with self; { FamAgg = derive2 { name="FamAgg"; version="1.22.0"; sha256="14lldajnl8ppy3nyy5mn987mvjfgr2vpx5zp6ky8md308rvgay0k"; depends=[BiocGenerics gap igraph kinship2 Matrix survey]; }; FastqCleaner = derive2 { name="FastqCleaner"; version="1.12.0"; sha256="1cw0916qdn1an3wcnx5659q2f22rs78p9m5v2xp9nyp5phjb97pp"; depends=[Biostrings DT htmltools IRanges Rcpp S4Vectors shiny shinyBS ShortRead]; }; FilterFFPE = derive2 { name="FilterFFPE"; version="1.4.0"; sha256="1c9mfhc4hms2f861f71i7hbhnn3s1xlzabcmdjzybwiv16dl139w"; depends=[doParallel foreach GenomicRanges IRanges Rsamtools S4Vectors]; }; - FindIT2 = derive2 { name="FindIT2"; version="1.0.1"; sha256="0rg01zhsvjpk2wyx9c5czm8frm4q4kxlc0v75b55dd77l29amvww"; depends=[BiocGenerics BiocParallel dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel glmnet IRanges MultiAssayExperiment patchwork progress purrr qvalue rlang rtracklayer S4Vectors stringr SummarizedExperiment tibble tidyr withr]; }; + FindIT2 = derive2 { name="FindIT2"; version="1.0.2"; sha256="0ldrw0h9a6ba4lv9597h97b3b1h6ww8p8y8mwlwiwr4pd6hfqbdg"; depends=[BiocGenerics BiocParallel dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel glmnet IRanges MultiAssayExperiment patchwork progress purrr qvalue rlang rtracklayer S4Vectors stringr SummarizedExperiment tibble tidyr withr]; }; FindMyFriends = derive2 { name="FindMyFriends"; version="1.23.0"; sha256="0xbhl6ljxb522r5062vv6xdziaaqkkwylmvlymvc5f1grjz0a4z9"; depends=[Biobase BiocGenerics BiocParallel Biostrings digest dplyr filehash ggdendro ggplot2 gtable igraph IRanges kebabs Matrix Rcpp reshape2 S4Vectors]; }; FitHiC = derive2 { name="FitHiC"; version="1.20.0"; sha256="0a3d2bxp98lmbf3i864zgfwxwvxyqfcrh75z9yz7ra7y44pkjr4y"; depends=[data_table fdrtool Rcpp]; }; FlowSOM = derive2 { name="FlowSOM"; version="2.2.0"; sha256="062xrv8li2z849qa8mv5dhafqli6ziz099ikjfvi7v2fr7174p8f"; depends=[BiocGenerics colorRamps ConsensusClusterPlus CytoML dplyr flowCore flowWorkspace ggforce ggnewscale ggplot2 ggpointdensity ggpubr ggrepel igraph magrittr pheatmap RColorBrewer rlang Rtsne scattermore tidyr XML]; }; @@ -361,7 +361,7 @@ in with self; { GEOexplorer = derive2 { name="GEOexplorer"; version="1.0.0"; sha256="01hgjdp14b9r2044h0sd136f0px983n0il08wiii41vq1jgisvhb"; depends=[Biobase DT factoextra GEOquery ggplot2 heatmaply htmltools impute limma maptools pheatmap plotly scales shiny shinyBS shinybusy shinyHeatmaply stringr umap]; }; GEOfastq = derive2 { name="GEOfastq"; version="1.2.0"; sha256="03ya7x7dph6g97aa3gf3d7dinjcy8qipd0dyxqpdhdm1w1gx83by"; depends=[doParallel foreach plyr RCurl rvest stringr xml2]; }; GEOmetadb = derive2 { name="GEOmetadb"; version="1.56.0"; sha256="18v3h7518cc4fzdi7ivng81316012mry4ihyrldm85zgm4c5dign"; depends=[GEOquery RSQLite]; }; - GEOquery = derive2 { name="GEOquery"; version="2.62.0"; sha256="0fkx4jh1s76l015vwikkryarlx6iihb1z935nzpdhah3rpqx3b3z"; depends=[Biobase data_table dplyr httr limma magrittr readr tidyr xml2]; }; + GEOquery = derive2 { name="GEOquery"; version="2.62.1"; sha256="0plmh4x37r848g6ilvl1x8cim90rp85gikfc5m8lgi2i4xkq7hbq"; depends=[Biobase data_table dplyr httr limma magrittr R_utils readr tidyr xml2]; }; GEOsubmission = derive2 { name="GEOsubmission"; version="1.46.0"; sha256="0p0w55j7ij1242sa76bhgqwnj5zi0bh7s7qa14iga4ldigpxr63b"; depends=[affy Biobase]; }; GEWIST = derive2 { name="GEWIST"; version="1.38.0"; sha256="0xcywidrs6jvps93iv3qvr9ai1bdzn95icvswy8ganx09v5hfpy9"; depends=[car]; }; GGPA = derive2 { name="GGPA"; version="1.6.0"; sha256="0spiix8vlncrc2h1chmkfz8k79lpvq3qya33yyg7avf8dqdqaw31"; depends=[GGally matrixStats network Rcpp RcppArmadillo scales sna]; }; @@ -422,7 +422,7 @@ in with self; { GenomicFiles = derive2 { name="GenomicFiles"; version="1.30.0"; sha256="0i5y6dk6z18yqj5k4zy756c6l57z9jq2w5a5dksh2di4qgdgjx3x"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges MatrixGenerics Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; GenomicInteractions = derive2 { name="GenomicInteractions"; version="1.28.0"; sha256="090kxq5jn1jfr9fgbkvbjr5g4bcxzgsaal3gc9yx1n7pgmhccfmb"; depends=[Biobase BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph InteractionSet IRanges Rsamtools rtracklayer S4Vectors stringr]; }; GenomicOZone = derive2 { name="GenomicOZone"; version="1.8.0"; sha256="1dx72y7kmj7ng3r6qn9bzlmgq9pf7g738myhgrnmk4ivjl6f615w"; depends=[biomaRt Ckmeans_1d_dp GenomeInfoDb GenomicRanges ggbio ggplot2 gridExtra IRanges lsr plyr Rdpack S4Vectors]; }; - GenomicRanges = derive2 { name="GenomicRanges"; version="1.46.0"; sha256="03fdmzcf8h17ksa3byc3k5mxc65pqrbcnw00myz1q53l01p3cnf2"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; }; + GenomicRanges = derive2 { name="GenomicRanges"; version="1.46.1"; sha256="133r27wsdyppjv9kq0d2xamx007lkf416nnlaygs4hs3a76p9xwx"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; }; GenomicScores = derive2 { name="GenomicScores"; version="2.6.0"; sha256="18fzi2qi95851ci7qrzwpb7v6fhwp6xi1d1vk11xbygpbvql5mls"; depends=[AnnotationHub Biobase BiocFileCache BiocGenerics BiocManager Biostrings DelayedArray GenomeInfoDb GenomicRanges HDF5Array IRanges rhdf5 S4Vectors XML]; }; GenomicSuperSignature = derive2 { name="GenomicSuperSignature"; version="1.2.0"; sha256="0nqzrv3871ywd3p3wpgq3yhmbdqcy27582kmms9mnl8xylyhmw0i"; depends=[Biobase BiocFileCache ComplexHeatmap dplyr flextable ggplot2 ggpubr plotly S4Vectors SummarizedExperiment]; }; GenomicTuples = derive2 { name="GenomicTuples"; version="1.28.0"; sha256="15rv41z4mxj8nn1mkvs73warygd1cmwi9m7lshgld1wf6zk43ypl"; depends=[BiocGenerics data_table GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; @@ -438,7 +438,7 @@ in with self; { GreyListChIP = derive2 { name="GreyListChIP"; version="1.26.0"; sha256="1h7h27q6l9d8j0shklyrh135zrwx56v4zzmm21cj1b7dvmwvpbcv"; depends=[BSgenome GenomeInfoDb GenomicAlignments GenomicRanges MASS Rsamtools rtracklayer SummarizedExperiment]; }; Guitar = derive2 { name="Guitar"; version="2.10.0"; sha256="082yja4mmsq77sllv3c88agxjbb6jxwil2krb8fkfsijvyyx11c9"; depends=[AnnotationDbi dplyr GenomicFeatures GenomicRanges ggplot2 knitr magrittr rtracklayer]; }; Gviz = derive2 { name="Gviz"; version="1.38.0"; sha256="0nqa7m300d7gpsayb6c6rv64d3y8c390wvwgz7v29zs9c025s9a8"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; }; - HDF5Array = derive2 { name="HDF5Array"; version="1.22.0"; sha256="13h6qr4zkynir0ck2aiasjvlid7hrk3m2lzkjyhpvbg1a15r8zi9"; depends=[BiocGenerics DelayedArray IRanges Matrix rhdf5 rhdf5filters Rhdf5lib S4Vectors]; }; + HDF5Array = derive2 { name="HDF5Array"; version="1.22.1"; sha256="1al4a88pgdl7hfhphsnwl1gg1c1kmw37wcdr4v4pfsw5l8ff7nx4"; depends=[BiocGenerics DelayedArray IRanges Matrix rhdf5 rhdf5filters Rhdf5lib S4Vectors]; }; HDTD = derive2 { name="HDTD"; version="1.28.0"; sha256="1pd0bbni121b5yq3j3sn8n67xgjfm4zygcpx7zgddcnq250544vl"; depends=[Rcpp RcppArmadillo]; }; HELP = derive2 { name="HELP"; version="1.52.0"; sha256="17bhh9phny0cw3n61582wywl395ls0ak68y8fqv1ibbqiip193ag"; depends=[Biobase]; }; HEM = derive2 { name="HEM"; version="1.66.0"; sha256="1jv8fwqsk05g7l7bbl7z928m83gk0gw70pix0dp901j9hm1xqjpb"; depends=[Biobase]; }; @@ -447,7 +447,7 @@ in with self; { HIPPO = derive2 { name="HIPPO"; version="1.6.0"; sha256="0fr1zhavdzf7rmf0diy4r9qphfcphzbcqcs4370fyd4vyz5bid6l"; depends=[dplyr ggplot2 ggrepel gridExtra irlba magrittr Matrix reshape2 rlang Rtsne SingleCellExperiment umap]; }; HIREewas = derive2 { name="HIREewas"; version="1.12.0"; sha256="0bjj5h9vc1fhzcn31hvkpcmnx6gzmz3fhczgy21q0ngp26ny10yd"; depends=[gplots quadprog]; }; HMMcopy = derive2 { name="HMMcopy"; version="1.36.0"; sha256="0kbvdsvvrrzy05a5qiybc9chjfiidcz5mk09nj9s2x6vsj2whwxi"; depends=[data_table]; }; - HPAStainR = derive2 { name="HPAStainR"; version="1.4.0"; sha256="1k2q2cj8lbcqdqm7rg9kkj786gvp1h91v7k78syxpsl8mmg58msr"; depends=[data_table dplyr scales shiny stringr tibble tidyr]; }; + HPAStainR = derive2 { name="HPAStainR"; version="1.4.1"; sha256="13q2kqbwv3a3qczq0ffr9l4wnkzwkqhq1v33z1948pj4nlx7kd1s"; depends=[data_table dplyr scales shiny stringr tibble tidyr]; }; HPAanalyze = derive2 { name="HPAanalyze"; version="1.12.0"; sha256="1cm64d8sp2z03s5i6i8a625wr80nw5c1ri7kfrx5jv60379srbz9"; depends=[dplyr ggplot2 gridExtra openxlsx tibble xml2]; }; HPiP = derive2 { name="HPiP"; version="1.0.0"; sha256="0wfyy4lpv24zad30qngicvrg1yaz9xzx8n48fgcafwps09n8ai25"; depends=[caret corrplot dplyr ggplot2 httr igraph magrittr pROC protr PRROC purrr readr stringr tibble tidyr]; }; HTSFilter = derive2 { name="HTSFilter"; version="1.34.0"; sha256="0jc2yxx0jysd1h2qnn3mv3zfm8bxc96wig6gywlqxy5rbcrm3gm5"; depends=[Biobase BiocParallel DESeq2 edgeR]; }; @@ -466,7 +466,7 @@ in with self; { HilbertCurve = derive2 { name="HilbertCurve"; version="1.24.0"; sha256="1i6fm91y6dza021d5qc8s03x7qmalmm9bkmcj5rflbra5i6fzivz"; depends=[circlize GenomicRanges HilbertVis IRanges png polylabelr]; }; HilbertVis = derive2 { name="HilbertVis"; version="1.52.0"; sha256="1vwyzxdjngi1firr8kasiam576kwvlx82g1p7j27vlbs1libr9zk"; depends=[lattice]; }; HilbertVisGUI = derive2 { name="HilbertVisGUI"; version="1.52.0"; sha256="0db7chajaghg6wqawap05ckaadgxvcswzd14i4p6gmfq6j4zpk8g"; depends=[HilbertVis]; }; - HubPub = derive2 { name="HubPub"; version="1.2.0"; sha256="0jjncy9g1cq2n0cf5r7i4sh7sqygvjdm0gpdswhv8s78hdczyq05"; depends=[available aws_s3 BiocManager biocthis dplyr fs usethis]; }; + HubPub = derive2 { name="HubPub"; version="1.2.2"; sha256="1gmgvallb60jw0wy7lbcy8fv96fbjqkf6brvj2qjin5lwxs053yy"; depends=[available aws_s3 BiocManager biocthis dplyr fs usethis]; }; HumanTranscriptomeCompendium = derive2 { name="HumanTranscriptomeCompendium"; version="1.10.0"; sha256="0v0yshvay7z1dalilx4w1jnswrr96gmsm71srh0j1q91f7ikwds9"; depends=[S4Vectors shiny ssrch SummarizedExperiment]; }; HybridMTest = derive2 { name="HybridMTest"; version="1.38.0"; sha256="1p31y61gjii29pllwpyb27ii96ckkd4v78pddnvz9c8fq61bmk6k"; depends=[Biobase fdrtool MASS survival]; }; IHW = derive2 { name="IHW"; version="1.22.0"; sha256="0vgij5zyaw3fh7arkg4jy1mizsqzbkcsjl05mh3ng2bqh30kyqqx"; depends=[BiocGenerics fdrtool lpsymphony slam]; }; @@ -575,7 +575,7 @@ in with self; { MSGFplus = derive2 { name="MSGFplus"; version="1.28.0"; sha256="1k0qm049gk4gjhd88zhxxrpc944r7ndq8dys08ai2kbaqignvb7y"; depends=[mzID ProtGenerics]; }; MSPrep = derive2 { name="MSPrep"; version="1.4.0"; sha256="0nkmmjzkdxizk2yv1ahgsp8zsr4jjazpzqqwcsx86dhrgf5jk5cz"; depends=[crmn ddpcr dplyr magrittr missForest pcaMethods preprocessCore rlang S4Vectors stringr SummarizedExperiment sva tibble tidyr VIM]; }; MSnID = derive2 { name="MSnID"; version="1.28.0"; sha256="0dks5h3vp9ly8x24px2rl5blqicxybpxjnxvg2p1bwq8zvjkm38p"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics BiocStyle Biostrings data_table doParallel dplyr foreach ggplot2 iterators msmsTests MSnbase mzID mzR ProtGenerics purrr R_cache Rcpp reshape2 rlang RUnit stringr tibble xtable]; }; - MSnbase = derive2 { name="MSnbase"; version="2.20.0"; sha256="1r5igzb7xb5qcw37ffy0c3j6vlg9zffmksrc57rs1pmfnca773z5"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant MASS MsCoreUtils mzID mzR pcaMethods plyr ProtGenerics Rcpp S4Vectors scales vsn XML]; }; + MSnbase = derive2 { name="MSnbase"; version="2.20.1"; sha256="0ip614mdwisz2hlmyfgngysq1s3hajb88cgdmygfc8i6kyxjkjzl"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant MASS MsCoreUtils mzID mzR pcaMethods plyr ProtGenerics Rcpp S4Vectors scales vsn XML]; }; MSstats = derive2 { name="MSstats"; version="4.2.0"; sha256="1i36a0vhqb2sjllyh6ascfm5fbzf8awazbk1vjq5n8mh2cq72ri9"; depends=[checkmate data_table ggplot2 ggrepel gplots limma lme4 marray MASS MSstatsConvert preprocessCore Rcpp RcppArmadillo survival]; }; MSstatsConvert = derive2 { name="MSstatsConvert"; version="1.4.0"; sha256="0p44g7kv2zyknmiki94w0v4zq1qpa2ly17hbfqkfy9c1xql7b38g"; depends=[checkmate data_table log4r stringi]; }; MSstatsLOBD = derive2 { name="MSstatsLOBD"; version="1.2.0"; sha256="0d78hd9ip2amkj5pjmwy376qhzfd46wqmzl38rbm52d946c69sb8"; depends=[ggplot2 minpack_lm Rcpp]; }; @@ -621,13 +621,14 @@ in with self; { MiPP = derive2 { name="MiPP"; version="1.66.0"; sha256="1m42rv20f9cwnr97ckx4lm193zf0kjr2v33fisymyaq5rrl7ppfn"; depends=[Biobase e1071 MASS]; }; MiRaGE = derive2 { name="MiRaGE"; version="1.36.0"; sha256="10laq0b1acsirykb5cjxlpj91lqvmhsd3ammk331njaaczh4mjrx"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager S4Vectors]; }; MicrobiomeProfiler = derive2 { name="MicrobiomeProfiler"; version="1.0.0"; sha256="13awswgm1n30fy73xxlph5aay8a4nkb1gjjzhqy9w7djpm99nw8g"; depends=[clusterProfiler config DT enrichplot ggplot2 golem htmltools magrittr shiny shinycustomloader shinyWidgets]; }; - MicrobiotaProcess = derive2 { name="MicrobiotaProcess"; version="1.6.1"; sha256="1qhj7vr87pl1aliqn38c980jrgaiz8d462pfv8pcb0l5xgfvpndz"; depends=[ape Biostrings coin dplyr foreach ggplot2 ggrepel ggsignif ggstar ggtree magrittr MASS patchwork rlang SummarizedExperiment tibble tidyr tidyselect tidytree treeio vegan zoo]; }; + MicrobiotaProcess = derive2 { name="MicrobiotaProcess"; version="1.6.2"; sha256="093gxp93h1f4h4rkmpwp77awa35imjxgnrvw01xm65mnxsdm47db"; depends=[ape Biostrings coin dplyr dtplyr foreach ggplot2 ggrepel ggsignif ggstar ggtree ggtreeExtra magrittr MASS patchwork pillar rlang SummarizedExperiment tibble tidyr tidyselect tidytree treeio vegan zoo]; }; MineICA = derive2 { name="MineICA"; version="1.34.0"; sha256="00pbhbz44dx5gfzzf1drwny4a779zxk4hjavb1fkpg15cm7c152x"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi lumiHumanAll_db marray mclust plyr RColorBrewer Rgraphviz scales xtable]; }; MinimumDistance = derive2 { name="MinimumDistance"; version="1.38.0"; sha256="077prww1k374czkd8dlpy081ki101vpl2gpi4dmjbzzq5q45ld7f"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; }; ModCon = derive2 { name="ModCon"; version="1.2.0"; sha256="1pgvkscvsacm7ag6yyqlpxs6c5vyb3hlmk6gzkiarsc1b29iqhm4"; depends=[data_table]; }; Modstrings = derive2 { name="Modstrings"; version="1.10.0"; sha256="0lnfvv8k0ffpf72zvhxy6831mgr4gajd4miad8rjzaajhqndr2yf"; depends=[BiocGenerics Biostrings crayon GenomicRanges IRanges S4Vectors stringi stringr XVector]; }; MoonlightR = derive2 { name="MoonlightR"; version="1.19.0"; sha256="1bfp6cx4nmb821ww9bxxg2cfh87blwddrdjixpgb4aqzwizmhzhv"; depends=[Biobase circlize clusterProfiler doParallel DOSE foreach GEOquery gplots HiveR limma parmigene randomForest RColorBrewer RISmed SummarizedExperiment TCGAbiolinks]; }; MotifDb = derive2 { name="MotifDb"; version="1.36.0"; sha256="0a2zg26zzk7bj5c33mbwl8dx9lh1hns8q8kwp09rbfjdichv7425"; depends=[BiocGenerics Biostrings GenomicRanges IRanges rtracklayer S4Vectors splitstackshape]; }; + MouseFM = derive2 { name="MouseFM"; version="1.4.1"; sha256="1b80syai2wj9xg3ivxnjqkb1nwkfwmkrm40j7g085fdmdd2r08q1"; depends=[biomaRt curl data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gtools httr IRanges jsonlite reshape2 rlist scales tidyr]; }; MsBackendMassbank = derive2 { name="MsBackendMassbank"; version="1.2.0"; sha256="10dgck0rwzfxzlbdf8fclrci6858iqbl9g690fva4zsjllzykbl5"; depends=[BiocParallel DBI IRanges MsCoreUtils ProtGenerics S4Vectors Spectra]; }; MsBackendMgf = derive2 { name="MsBackendMgf"; version="1.2.0"; sha256="0p7lmiijxgms01qsrgih9r8y5q355w67nqmpj5l70c0b52cv3ri9"; depends=[BiocParallel IRanges MsCoreUtils S4Vectors Spectra]; }; MsBackendRawFileReader = derive2 { name="MsBackendRawFileReader"; version="1.0.0"; sha256="0gg71a5y6m46xnm45cmkjqbss4c416v8k8s21yp3qids7zc36izi"; depends=[BiocParallel IRanges MsCoreUtils rawrr S4Vectors Spectra]; }; @@ -703,7 +704,7 @@ in with self; { PLPE = derive2 { name="PLPE"; version="1.54.0"; sha256="1njzm736b6lvh34hh58zbdm1ixgwmjk58dr916sda5d15bbpgqrf"; depends=[Biobase LPE MASS]; }; POMA = derive2 { name="POMA"; version="1.4.0"; sha256="11ihqijqys6yd2ns99892dyi677v1d5vv10w99n0ka1821i9jcsb"; depends=[broom caret clisymbols ComplexHeatmap crayon dplyr e1071 ggcorrplot ggplot2 ggraph ggrepel glasso glmnet impute knitr limma magrittr mixOmics MSnbase patchwork qpdf randomForest RankProd rmarkdown tibble tidyr vegan]; }; POWSC = derive2 { name="POWSC"; version="1.2.0"; sha256="159m2ds42dnvx9f2w2g9y4avjwq6n2fm4fq7v6rbyynf8hp4hwnw"; depends=[Biobase ggplot2 limma MAST pheatmap RColorBrewer SingleCellExperiment SummarizedExperiment]; }; - PPInfer = derive2 { name="PPInfer"; version="1.20.0"; sha256="06saafcy5n9h9dg95q64i1cv7hpbpv7r13fj9y8pyc6gqy6bicq4"; depends=[biomaRt fgsea ggplot2 igraph kernlab STRINGdb yeastExpData]; }; + PPInfer = derive2 { name="PPInfer"; version="1.20.3"; sha256="190rxfhwps19260wm51gyzk0ih8mi53drp6jq0jz5vldi0mr63si"; depends=[biomaRt fgsea ggplot2 httr igraph kernlab STRINGdb yeastExpData]; }; PREDA = derive2 { name="PREDA"; version="1.40.0"; sha256="0435857cg30410w1iqpqd15nwn9x43axw0n2w6pv2jwcxdn58gjj"; depends=[annotate Biobase lokern multtest]; }; PROMISE = derive2 { name="PROMISE"; version="1.46.0"; sha256="1pajvwr89jh7nn2myv5y24xk2k1vl6zs52lrla70v25xxhpmwwkk"; depends=[Biobase GSEABase]; }; PROPER = derive2 { name="PROPER"; version="1.26.0"; sha256="19rn1vad18sfdwgnyh9fv5hh70h4pvsy32rac393hd39wqqhmsl0"; depends=[edgeR]; }; @@ -731,7 +732,7 @@ in with self; { PoTRA = derive2 { name="PoTRA"; version="1.10.0"; sha256="0qqr9mjqhfk76pnpzd0hzxw180swqr9b1dhakj65lha5mha4vgid"; depends=[BiocGenerics graph graphite igraph org_Hs_eg_db]; }; PrInCE = derive2 { name="PrInCE"; version="1.10.0"; sha256="09fvk96zxj0bglbs8kgnbg3xxri2pial14g4kcsynaac0m2lmdyk"; depends=[Biobase dplyr forecast Hmisc LiblineaR magrittr MSnbase naivebayes progress purrr ranger Rdpack robustbase speedglm tester tidyr]; }; PrecisionTrialDrawer = derive2 { name="PrecisionTrialDrawer"; version="1.10.0"; sha256="1zr1jpbnjjrgrbm99n8182akp7xg75bf54gy0wc66r7dxj4vivfl"; depends=[BiocParallel biomaRt brglm cgdsr data_table DT GenomicRanges ggplot2 ggrepel googleVis httr IRanges jsonlite LowMACAAnnotation magrittr matrixStats RColorBrewer reshape2 S4Vectors shiny shinyBS stringr XML]; }; - Prostar = derive2 { name="Prostar"; version="1.26.0"; sha256="054ify5nv3cr1zy1ijnbvvnc9nwam5vqmfyl784pckf9igywb8gb"; depends=[BiocManager colourpicker DAPAR DAPARdata data_table DT future highcharter htmlwidgets later promises R_utils rclipboard rhandsontable sass shiny shinyAce shinyBS shinycssloaders shinyjqui shinyjs shinythemes shinyTree shinyWidgets tibble webshot XML]; }; + Prostar = derive2 { name="Prostar"; version="1.26.1"; sha256="1w5jxidyrjiy9ag5wdvvnz6ld5ksjxi4kci2fwrls8g5wmbh2qgp"; depends=[BiocManager colourpicker DAPAR DAPARdata data_table DT future highcharter htmlwidgets later promises R_utils rclipboard rhandsontable sass shiny shinyAce shinyBS shinycssloaders shinyjqui shinyjs shinythemes shinyTree shinyWidgets tibble webshot XML]; }; ProtGenerics = derive2 { name="ProtGenerics"; version="1.26.0"; sha256="0x53pk7h47gjza1q5pz7jb1qqhwa9z2rr5fr61qc92zl3mqk57m0"; depends=[]; }; ProteoDisco = derive2 { name="ProteoDisco"; version="1.0.0"; sha256="14rizjlwf87qhi929b4vafjzvx7p112bsq0zb2wppxh3m7izs4zp"; depends=[BiocGenerics BiocParallel Biostrings checkmate cleaver dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges ParallelLogger plyr rlang S4Vectors tibble tidyr VariantAnnotation XVector]; }; ProteoMM = derive2 { name="ProteoMM"; version="1.12.0"; sha256="1y7w6rs11kclh5nipnrh02ny12bgf2rkb2dghqcybl80s6r8m6bm"; depends=[biomaRt gdata ggplot2 ggrepel gtools matrixStats]; }; @@ -763,12 +764,12 @@ in with self; { REBET = derive2 { name="REBET"; version="1.12.0"; sha256="19hsykk770jyrvd5lbaybggs4j1f1rnrbcq2mb0cz8w288lh4i5p"; depends=[ASSET]; }; REDseq = derive2 { name="REDseq"; version="1.40.0"; sha256="106dx160nzjlxfg76v9g7f1rjpiwfrsab7639x94s62v2g51x5l4"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome BSgenome_Celegans_UCSC_ce2 ChIPpeakAnno IRanges multtest]; }; REMP = derive2 { name="REMP"; version="1.18.0"; sha256="0n3ymwgq2bfix6qjgakib08hs0dw2cq838l79d3db3dxjaix8rs2"; depends=[AnnotationHub BiocGenerics BiocParallel Biostrings BSgenome caret doParallel foreach GenomeInfoDb GenomicRanges impute IRanges iterators kernlab minfi org_Hs_eg_db ranger readr rtracklayer S4Vectors settings SummarizedExperiment]; }; - RGMQL = derive2 { name="RGMQL"; version="1.14.0"; sha256="1ywmgqlzhjiv5hygq9lknahm94wz6xfxnc7wdpkaw4vri9lsdr3h"; depends=[BiocGenerics data_table dplyr GenomicRanges glue httr plyr RGMQLlib rJava rtracklayer S4Vectors xml2]; }; + RGMQL = derive2 { name="RGMQL"; version="1.14.1"; sha256="11s4hswxg180w1i92ps0fr0jfw956hpdbaimwrrzmvvlc4s3qwhq"; depends=[BiocGenerics data_table dplyr GenomicRanges glue httr plyr RGMQLlib rJava rtracklayer S4Vectors xml2]; }; RGSEA = derive2 { name="RGSEA"; version="1.28.0"; sha256="1bv8kg3npac1qlrj6mpx6f89avjqfp937w99f7iw60yqin8psa89"; depends=[BiocGenerics]; }; RGalaxy = derive2 { name="RGalaxy"; version="1.37.1"; sha256="093dqjgsz4x4gw6wdbdbyjq3jazn64g7gndld0bxm4yw8ijg2s2x"; depends=[Biobase BiocGenerics optparse roxygen2 XML]; }; RGraph2js = derive2 { name="RGraph2js"; version="1.22.0"; sha256="16pim49wls085ahaqac26ah7mx2a6ww9gf7s1rdsikr56xcnkzsb"; depends=[digest graph rjson whisker]; }; RIPAT = derive2 { name="RIPAT"; version="1.4.0"; sha256="1kkavimbx8nq7qnddj363kvsv08sckk8j136xlh48fma0r8h3n43"; depends=[biomaRt GenomicRanges ggplot2 IRanges karyoploteR openxlsx plyr regioneR rtracklayer stringr]; }; - RITAN = derive2 { name="RITAN"; version="1.17.0"; sha256="02xp9f0kz443k98r3ncj67wqiipdl5iww9kbkdg9mxgwnahvbff9"; depends=[BgeeDB dynamicTreeCut ggplot2 gplots gridExtra gsubfn hash igraph knitr linkcomm MCL plotrix png RColorBrewer reshape2 RITANdata sqldf STRINGdb]; }; + RITAN = derive2 { name="RITAN"; version="1.18.0"; sha256="0x7k4lyww6d6hz0x9f8bqygcmga6ymsfyqp5cn9pmsbc4wig1kbm"; depends=[BgeeDB dynamicTreeCut ggplot2 gplots gridExtra gsubfn hash igraph knitr linkcomm MCL plotrix png RColorBrewer reshape2 RITANdata sqldf STRINGdb]; }; RIVER = derive2 { name="RIVER"; version="1.18.0"; sha256="141qk3bl9ksc3sxpdfja8siw22njmdaic4zap1pm9nk6gssd9g1c"; depends=[Biobase ggplot2 glmnet pROC]; }; RImmPort = derive2 { name="RImmPort"; version="1.22.0"; sha256="0fm29zlj8qllqi02h20l4ipf9ppqmajkk9mc9zr4nbx6pspxmk4q"; depends=[data_table DBI dplyr plyr reshape2 RSQLite sqldf]; }; RJMCMCNucleosomes = derive2 { name="RJMCMCNucleosomes"; version="1.18.0"; sha256="0k4dk8m1pmgflyrwa8szkbfwqqrz8b0xnnf1df200npyrw49mb22"; depends=[BiocGenerics BiocParallel consensusSeekeR GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; @@ -858,7 +859,7 @@ in with self; { Rsubread = derive2 { name="Rsubread"; version="2.8.1"; sha256="0lpx0dp5570kbrq7v0g573axkhi00qrf38si59vmvnqxhmkvsixn"; depends=[Matrix]; }; Rtpca = derive2 { name="Rtpca"; version="1.4.0"; sha256="05i25sfgdqsnw9ky0p25aix8qrzkirmcl5vvpqrv8bwvs335glm4"; depends=[Biobase dplyr fdrtool ggplot2 pROC tibble tidyr]; }; Rtreemix = derive2 { name="Rtreemix"; version="1.56.0"; sha256="15kr8y8w059bxhl9x7j7qg01b55jsxfmfzgdyxk6l40i3l4i0wh1"; depends=[Biobase graph Hmisc]; }; - S4Vectors = derive2 { name="S4Vectors"; version="0.32.2"; sha256="0xrmii2dnwyknpjdiwwjlklgzpbk9q09br27rq5ffz08if9yyk20"; depends=[BiocGenerics]; }; + S4Vectors = derive2 { name="S4Vectors"; version="0.32.3"; sha256="0wp29v41f9cf6khq2ww0f63nsq6219l1ycajzdqp3a2xda734ncw"; depends=[BiocGenerics]; }; SAIGEgds = derive2 { name="SAIGEgds"; version="1.8.0"; sha256="08jhqpi13kg69nfl425m6rvgyvzfspfylgnzkk1v6v0kaz5876f2"; depends=[gdsfmt Rcpp RcppArmadillo RcppParallel SeqArray SPAtest]; }; SANTA = derive2 { name="SANTA"; version="2.30.0"; sha256="0w0rd0vmjvz98ijk53ikpin7x5acl0yfkb2v7y77ma6lizy70rgl"; depends=[igraph Matrix]; }; SBGNview = derive2 { name="SBGNview"; version="1.8.0"; sha256="17jh1ad1a951r89xd9127c1wv5s4rzd03qq8rh5zjn2zxzpwswr4"; depends=[AnnotationDbi bookdown httr igraph KEGGREST knitr pathview Rdpack rmarkdown rsvg SBGNview_data SummarizedExperiment xml2]; }; @@ -1075,13 +1076,13 @@ in with self; { arrayQualityMetrics = derive2 { name="arrayQualityMetrics"; version="3.50.0"; sha256="034xdnqvgwqy1wh17mmjzmhzj0iy8sdx4al0ngdxdfnxcjk4gfny"; depends=[affy affyPLM beadarray Biobase genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG svglite vsn XML]; }; artMS = derive2 { name="artMS"; version="1.12.0"; sha256="0gaxd759zv273jh15l5zifh7k995sx8yda097lhjafdph7jmf0nh"; depends=[AnnotationDbi bit64 circlize cluster corrplot data_table dplyr getopt ggdendro ggplot2 ggrepel gplots limma MSstats openxlsx org_Hs_eg_db pheatmap plotly plyr RColorBrewer scales seqinr stringr tidyr UpSetR VennDiagram yaml]; }; atSNP = derive2 { name="atSNP"; version="1.10.0"; sha256="0yy731ivpcrmjwpljxzvlk7n2pygydw2q58gq90d1midch1nf0lx"; depends=[BiocFileCache BiocParallel BSgenome data_table ggplot2 lifecycle motifStack rappdirs Rcpp testthat]; }; - atena = derive2 { name="atena"; version="1.0.0"; sha256="132xp8cczvd7hznhdl1a7h410khahf8yqz3zr9gdyrni1viabxm9"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges Matrix Rsamtools S4Vectors sparseMatrixStats SQUAREM SummarizedExperiment]; }; + atena = derive2 { name="atena"; version="1.0.1"; sha256="0v7asl17wvdj5qbss2kpkb2xvkmlxf04f7f1cmkzk8kv0xa9qa1h"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges Matrix Rsamtools S4Vectors sparseMatrixStats SQUAREM SummarizedExperiment]; }; attract = derive2 { name="attract"; version="1.46.0"; sha256="1vh6wgi6wmjry25khzbq32s67jjn581zjhhfqbl7y2dkfq2fvybf"; depends=[AnnotationDbi Biobase cluster GOstats KEGGREST limma org_Hs_eg_db reactome_db]; }; autonomics = derive2 { name="autonomics"; version="1.2.0"; sha256="1j0nsbdw7sahy031bvp8pg8a1fg7ql0is65d0mfh8345lbmr29sn"; depends=[abind assertive BiocFileCache BiocGenerics colorspace data_table edgeR ggplot2 ggrepel gridExtra limma magrittr matrixStats MultiAssayExperiment pcaMethods R_utils rappdirs readxl rlang S4Vectors scales stringi SummarizedExperiment tidyr]; }; awst = derive2 { name="awst"; version="1.2.0"; sha256="0qxi4f7ngfsx17q9szhl95bhihcfx36bw4n175zyfdnac6cb9kap"; depends=[SummarizedExperiment]; }; bacon = derive2 { name="bacon"; version="1.22.0"; sha256="13dhma34j9ggryainn4x6qvd3hphpxks5gf0mysia00r9hhpwwlc"; depends=[BiocParallel ellipse ggplot2]; }; ballgown = derive2 { name="ballgown"; version="2.26.0"; sha256="0fiky82arvgzgxrm4bqn74m5kngqpdaqf6ks4cr89nlnhfq0v6rf"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; }; - bambu = derive2 { name="bambu"; version="2.0.0"; sha256="1r0y3rzqhcasrshranh4nlbm2ahphzizy907xzka0kkkaz7g9zqr"; depends=[BiocGenerics BiocParallel data_table dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment tidyr xgboost]; }; + bambu = derive2 { name="bambu"; version="2.0.1"; sha256="0bzbaw57syaw2c8d4484dl229brw2d33105ak6krjpl9kd6av9y9"; depends=[BiocGenerics BiocParallel data_table dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment tidyr xgboost]; }; bamsignals = derive2 { name="bamsignals"; version="1.26.0"; sha256="03m3yaagplh7j4q5hp3cfcdqwsnh1pwrlla9cv3ajnfd83s8ncqv"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; }; banocc = derive2 { name="banocc"; version="1.18.0"; sha256="0p5v601j1lkgh9prlvalp3xpqw87xq7ql0bak212443n15pfj3a4"; depends=[coda mvtnorm rstan stringr]; }; barcodetrackR = derive2 { name="barcodetrackR"; version="1.2.0"; sha256="1z7sj2ykp34g9bf0x0s3qavrprbiaksgk5r4hsakb24jjbi65jnh"; depends=[circlize cowplot dplyr ggdendro ggplot2 ggridges magrittr plyr proxy RColorBrewer rlang S4Vectors scales shiny SummarizedExperiment tibble tidyr vegan viridis]; }; @@ -1109,11 +1110,11 @@ in with self; { biocthis = derive2 { name="biocthis"; version="1.4.0"; sha256="0kh5lmv992v4r5r58x29403cll0zxr9fx4ar81nrzvnch5668v39"; depends=[BiocManager fs glue rlang styler usethis]; }; biodb = derive2 { name="biodb"; version="1.2.1"; sha256="1z4adapsnpw6fwanihdz43r11ijypxs5wbndb1i98j8kb7wf308k"; depends=[BiocFileCache chk jsonlite lgr lifecycle openssl plyr progress R6 rappdirs Rcpp RCurl RSQLite stringr testthat withr XML yaml]; }; biodbChebi = derive2 { name="biodbChebi"; version="1.0.1"; sha256="1f1bbfk0zp7x07vgnskd0wxb0zv2pvjk22cndw2zn7pgds0g9d9d"; depends=[biodb R6]; }; - biodbHmdb = derive2 { name="biodbHmdb"; version="1.0.2"; sha256="0q47y6fi6q9qvby3c3g84p3w8r5ks4ilgsgjlv1ava0ys0fc9iiw"; depends=[biodb R6 Rcpp testthat]; }; + biodbHmdb = derive2 { name="biodbHmdb"; version="1.0.3"; sha256="14pgyb4zjl65qpmj04zmlafi536rcwq9ngjx1m403k3fifa7ki9q"; depends=[biodb R6 Rcpp testthat]; }; biodbKegg = derive2 { name="biodbKegg"; version="1.0.0"; sha256="16xmm3ymzd4jf55plahbxi844hpv0hpqq6v2ygcjf6wrs0yy2mhd"; depends=[biodb chk lifecycle R6]; }; biodbLipidmaps = derive2 { name="biodbLipidmaps"; version="1.0.1"; sha256="14086f88r7mavpzp823mhpi4b9zq8q2kqxlwnmp02i03jj8mjnr8"; depends=[biodb lifecycle R6]; }; biodbUniprot = derive2 { name="biodbUniprot"; version="1.0.0"; sha256="1aydkqqb8vs5b844ff1j09a7g8rmf7qr6rg2aw8nqshihq510v4d"; depends=[biodb R6]; }; - biomaRt = derive2 { name="biomaRt"; version="2.50.0"; sha256="069wqihm8pj3r41dizvdbj4jnw9bsc5jrz8czfrak5v69bgk5v5q"; depends=[AnnotationDbi BiocFileCache digest httr progress rappdirs stringr XML xml2]; }; + biomaRt = derive2 { name="biomaRt"; version="2.50.1"; sha256="1lm8axjmi2k1d2x0gdlvs0fzsd68xvxx7sn1wn6v4wr0pv85qhkz"; depends=[AnnotationDbi BiocFileCache digest httr progress rappdirs stringr XML xml2]; }; biomformat = derive2 { name="biomformat"; version="1.22.0"; sha256="0xf99j4lhf8kh9h1317hrbzxdv6rljs1fn68r8s40x6y4db3l817"; depends=[jsonlite Matrix plyr rhdf5]; }; biomvRCNS = derive2 { name="biomvRCNS"; version="1.34.0"; sha256="01nhjhfyzs67p97bk9bjqdxk239ckl8sgfj55azk1zmw92aw2hfy"; depends=[GenomicRanges Gviz IRanges mvtnorm]; }; biosigner = derive2 { name="biosigner"; version="1.22.0"; sha256="189018qahyw33dmg73wa7k4rp8nzrx6ai8f2dr6vhbpcdc1gnm0z"; depends=[Biobase e1071 MultiDataSet randomForest ropls]; }; @@ -1143,7 +1144,7 @@ in with self; { casper = derive2 { name="casper"; version="2.28.0"; sha256="0z85zq5crf3806c16hv0gpv072k2bf7hdyhq958y33282wybr4zd"; depends=[Biobase BiocGenerics coda EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; }; categoryCompare = derive2 { name="categoryCompare"; version="1.38.0"; sha256="1175is4gr6nr393lk5ha2c3rqsdzsl1mfnhkajcym8n0927rx8n8"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCy3]; }; cbaf = derive2 { name="cbaf"; version="1.16.0"; sha256="1xdl06arh5kwnp8159kbcrhlc19zlwk1srzk634jzp8pch9086da"; depends=[BiocFileCache cgdsr genefilter gplots openxlsx RColorBrewer]; }; - cbpManager = derive2 { name="cbpManager"; version="1.2.0"; sha256="12jw5pw10dhkmbljphrzc9g2jn5fd6wz5vn0ixmvndyq09yl9aw3"; depends=[basilisk dplyr DT htmltools jsonlite magrittr markdown plyr rapportools reticulate rintrojs shiny shinyBS shinycssloaders shinydashboard vroom]; }; + cbpManager = derive2 { name="cbpManager"; version="1.2.1"; sha256="1qzph5yb3bzs1g6h2spq6bg7gw2n4n81awr5089pgv1a5py2nwq0"; depends=[basilisk dplyr DT htmltools jsonlite magrittr markdown plyr rapportools reticulate rintrojs shiny shinyBS shinycssloaders shinydashboard vroom]; }; ccfindR = derive2 { name="ccfindR"; version="1.14.0"; sha256="00xaspkckhnflkaj0wfs06kbz6y6cfshr1mq4zhh7yszppgqflzd"; depends=[ape gtools irlba Matrix RColorBrewer Rcpp RcppEigen Rdpack Rmpi Rtsne S4Vectors SingleCellExperiment SummarizedExperiment]; }; ccmap = derive2 { name="ccmap"; version="1.20.0"; sha256="1z5lyv7m55wcncjlrqzflmp1jm2580k1pvajj3gjqif8kx477q3d"; depends=[AnnotationDbi BiocManager ccdata data_table doParallel foreach lsa xgboost]; }; ccrepe = derive2 { name="ccrepe"; version="1.30.0"; sha256="05wazs9bv4nlkzb3r98v31w0vpkv4071f9zw9dlh9jd8cm91ppk1"; depends=[infotheo]; }; @@ -1262,7 +1263,7 @@ in with self; { densvis = derive2 { name="densvis"; version="1.4.0"; sha256="0h4j307zw0hxpi8fpm86x3l6nq514y94gvn3qyc5hp6b521f4frd"; depends=[assertthat basilisk Rcpp reticulate]; }; derfinder = derive2 { name="derfinder"; version="1.28.0"; sha256="1hxf40ijrlmyrv3rprv5wx3am2vraplbsfg77kk9qd3gjq6q3ylp"; depends=[AnnotationDbi BiocGenerics BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; }; derfinderHelper = derive2 { name="derfinderHelper"; version="1.28.0"; sha256="06x0wy2wzpngak1pnrj2p0xzlx1nbcz0hs3p9q5ic6ib2rgwrh35"; depends=[IRanges Matrix S4Vectors]; }; - derfinderPlot = derive2 { name="derfinderPlot"; version="1.27.1"; sha256="0k074mh4rrm3lrrvbp95ss46ax7sbm1igfr5qpz7qdr0savgw5ki"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer reshape2 S4Vectors scales]; }; + derfinderPlot = derive2 { name="derfinderPlot"; version="1.28.1"; sha256="021w4vb8al3gc6rsc6qgywd5wxmysf2jif7cazxl4xhh37g1anni"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer reshape2 S4Vectors scales]; }; diffGeneAnalysis = derive2 { name="diffGeneAnalysis"; version="1.76.0"; sha256="1aprngqc2aqdw91q9c57y15xpkm4da4czf8ki55vnyngb9nlpabp"; depends=[minpack_lm]; }; diffHic = derive2 { name="diffHic"; version="1.26.0"; sha256="0xhm6jgalgb2v8k99k1z99rwhcaqjhhklm5ih8b6ayfmgmf6x7ih"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges InteractionSet IRanges limma locfit Rcpp rhdf5 Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment zlibbioc]; }; diffUTR = derive2 { name="diffUTR"; version="1.2.0"; sha256="0lmsbaaqzzvk25bxjb8ngvx0l5aqsmk7nng5kv4nghm7y7ipp1gf"; depends=[ComplexHeatmap DEXSeq dplyr edgeR ensembldb GenomeInfoDb GenomicRanges ggplot2 ggrepel IRanges limma matrixStats Rsubread rtracklayer S4Vectors stringi SummarizedExperiment viridisLite]; }; @@ -1412,8 +1413,8 @@ in with self; { ggcyto = derive2 { name="ggcyto"; version="1.22.0"; sha256="17dnmsa92gc2za36c3klgd7rklqlxrhkzs5ksnrc1am6a4knc0p1"; depends=[data_table flowCore flowWorkspace ggplot2 gridExtra hexbin ncdfFlow plyr RColorBrewer rlang scales]; }; ggmsa = derive2 { name="ggmsa"; version="1.0.0"; sha256="0w4jqmsa87ijflmyya8fnwmgha6s5ax2r9d67b0a3d7yz3d1kms8"; depends=[aplot Biostrings dplyr ggalt ggforce ggplot2 magrittr R4RNA RColorBrewer seqmagick tidyr]; }; ggspavis = derive2 { name="ggspavis"; version="1.0.0"; sha256="0lm7z8fzvw47zq618lfyxszy42qwhjr71xsyjsygvcl604z68jx0"; depends=[ggplot2 ggside SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; - ggtree = derive2 { name="ggtree"; version="3.2.0"; sha256="1c6b7kjh44k096v8mhn53abr181vpbn7s6ab7zk4phnsyfxsclxb"; depends=[ape aplot dplyr ggfun ggplot2 magrittr purrr rlang scales tidyr tidytree treeio yulab_utils]; }; - ggtreeExtra = derive2 { name="ggtreeExtra"; version="1.4.0"; sha256="0agvh1srirk5sv0ncj592ya86n6i3lp2yxijmykbwcqvy4ckb7cy"; depends=[ggnewscale ggplot2 ggtree rlang]; }; + ggtree = derive2 { name="ggtree"; version="3.2.1"; sha256="0qk39gdpy4kznjhmvi25y2spcdj2r1i6mv673vx8dzf66zfs20v8"; depends=[ape aplot dplyr ggfun ggplot2 magrittr purrr rlang scales tidyr tidytree treeio yulab_utils]; }; + ggtreeExtra = derive2 { name="ggtreeExtra"; version="1.4.1"; sha256="1lrnwzpkddc3byag4zyjiqhvkdkln03yq9qrxq0981cp6mai3aq7"; depends=[ggnewscale ggplot2 ggtree rlang]; }; girafe = derive2 { name="girafe"; version="1.46.0"; sha256="1al296zsp454lap05mh58y5lmrd0bfc4vmwaq5icnna56i4bi9m9"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; }; glmGamPoi = derive2 { name="glmGamPoi"; version="1.6.0"; sha256="1yffzcy910cawz2lzjqg8h1hrjvrkhz3pdif5q352kpzjklr5qjm"; depends=[beachmat BiocGenerics DelayedArray DelayedMatrixStats HDF5Array matrixStats Rcpp RcppArmadillo SummarizedExperiment]; }; glmSparseNet = derive2 { name="glmSparseNet"; version="1.12.0"; sha256="14qyj2jgjapjjznjzhslhcfbyxm9z0p28z8qrjqkxcb5z2hw9arq"; depends=[biomaRt dplyr forcats futile_logger ggplot2 glmnet glue httr loose_rock Matrix MultiAssayExperiment readr reshape2 sparsebn sparsebnUtils stringr SummarizedExperiment survminer]; }; @@ -1476,11 +1477,11 @@ in with self; { ideal = derive2 { name="ideal"; version="1.18.0"; sha256="01fix9fwcm1mglpggrkgagy80fg6yh772k4a1m0i5pvm923wcggv"; depends=[AnnotationDbi base64enc BiocParallel DESeq2 dplyr DT GenomicRanges ggplot2 ggrepel GO_db goseq GOstats gplots heatmaply IHW IRanges knitr limma pcaExplorer pheatmap plotly rentrez rintrojs rlang rmarkdown S4Vectors shiny shinyAce shinyBS shinydashboard stringr SummarizedExperiment topGO UpSetR]; }; idiogram = derive2 { name="idiogram"; version="1.70.0"; sha256="1qpip00mjdmc5vk6ab830ma6p4i0rgz8zih452jsqcfjpgc7q4p4"; depends=[annotate Biobase plotrix]; }; idpr = derive2 { name="idpr"; version="1.4.0"; sha256="0zakv6rmi3n5b1yd232vmm6qzlmnqkjxqd69fj5blg7lr1jyknjn"; depends=[Biostrings dplyr ggplot2 jsonlite magrittr plyr rlang]; }; - idr2d = derive2 { name="idr2d"; version="1.8.0"; sha256="0vkqdbifvidhamwav8k2h7kw8anprs3v8yl97kg593nw4564ii3b"; depends=[dplyr futile_logger GenomeInfoDb GenomicRanges ggplot2 idr IRanges magrittr reticulate scales stringr]; }; + idr2d = derive2 { name="idr2d"; version="1.8.1"; sha256="1cbzyf9nwqgqvz03526v3hxgkrrpfs4m8ajw186cxa4h6kdm232x"; depends=[dplyr futile_logger GenomeInfoDb GenomicRanges ggplot2 idr IRanges magrittr reticulate scales stringr]; }; igvR = derive2 { name="igvR"; version="1.14.0"; sha256="0i55zx2y92cl22d4x4h4gjdaknyxidsxqz22fpgyfd5abryx5ni3"; depends=[BiocGenerics BrowserViz GenomicAlignments GenomicRanges httpuv MotifDb RColorBrewer rtracklayer seqLogo VariantAnnotation]; }; illuminaio = derive2 { name="illuminaio"; version="0.36.0"; sha256="0icsp610am5vrd8x2h9c450phn4vl9c5wnzqmkix5hkqzrykk34m"; depends=[base64]; }; imageHTS = derive2 { name="imageHTS"; version="1.44.0"; sha256="1dg4p6qdhyhqdnpf3gaa1nlnw7d01yxhbhsbaiqnw9q9aprgi8hk"; depends=[Biobase cellHTS2 e1071 EBImage hwriter vsn]; }; - imcRtools = derive2 { name="imcRtools"; version="1.0.0"; sha256="0c0qq3kxslj925zr7hjqigq4d67h2byazjby1dv1b5l3s5swl5gh"; depends=[abind BiocNeighbors BiocParallel concaveman cytomapper data_table dplyr DT EBImage ggplot2 ggraph igraph magrittr pheatmap readr RTriangle S4Vectors scuttle sf SingleCellExperiment SpatialExperiment stringr SummarizedExperiment tidygraph viridis vroom]; }; + imcRtools = derive2 { name="imcRtools"; version="1.0.1"; sha256="1skxxkffvllr6iq23pjz50gpk44l3rf74i9qnzcwf8gcv892ccvp"; depends=[abind BiocNeighbors BiocParallel concaveman cytomapper data_table dplyr DT EBImage ggplot2 ggraph igraph magrittr pheatmap readr RTriangle S4Vectors scuttle sf SingleCellExperiment SpatialExperiment stringr SummarizedExperiment tidygraph viridis vroom]; }; immunoClust = derive2 { name="immunoClust"; version="1.26.0"; sha256="0vqn8455spray252b6kg771mwz4b6f51d4k7srg2i3rn7kyp7r38"; depends=[flowCore lattice]; }; immunotation = derive2 { name="immunotation"; version="1.2.0"; sha256="1rdmy46grqjf8ydgq0pgaja3jv4jna0yffw7fmiirfh96m2qvb00"; depends=[curl ggplot2 maps ontologyIndex readr rlang rvest stringr tidyr xml2]; }; impute = derive2 { name="impute"; version="1.68.0"; sha256="0k6dil8ljgp5qr87m7hxli4igb36fbxiwczaqc5pi8mlfh70fqj5"; depends=[]; }; @@ -1563,7 +1564,7 @@ in with self; { metahdep = derive2 { name="metahdep"; version="1.52.0"; sha256="1pwij0xjrrcvp3c24ia78nsk1lhgxwr16md55h9292vh0pmh4d8w"; depends=[]; }; metapod = derive2 { name="metapod"; version="1.2.0"; sha256="1s8dfzpgbpxbn3jvx891gvw3jyn43nlxb73yv1vjn85brk9zbqpk"; depends=[Rcpp]; }; metapone = derive2 { name="metapone"; version="1.0.0"; sha256="0mbbmjv3kwfn78ssar0g2cnajgflxx4gay9m668mryxirnnyvvsr"; depends=[BiocParallel fields markdown]; }; - metaseqR2 = derive2 { name="metaseqR2"; version="1.6.0"; sha256="122j7466kww6z9vcxnmzy9a42z2iaxc0bl48jx46kikbs5i9in54"; depends=[ABSSeq baySeq Biobase BiocGenerics BiocParallel biomaRt Biostrings corrplot DESeq2 DSS DT EDASeq edgeR genefilter GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gplots harmonicmeanp heatmaply htmltools httr IRanges jsonlite lattice limma locfit log4r magrittr MASS Matrix NBPSeq pander qvalue rmarkdown rmdformats Rsamtools RSQLite rtracklayer S4Vectors stringr SummarizedExperiment survcomp VennDiagram vsn yaml zoo]; }; + metaseqR2 = derive2 { name="metaseqR2"; version="1.6.1"; sha256="1sdayf0mdvwqdmqxm62xr5g6llskhsb6s90smxsdr6pp4y7gcr8c"; depends=[ABSSeq baySeq Biobase BiocGenerics BiocParallel biomaRt Biostrings corrplot DESeq2 DSS DT EDASeq edgeR genefilter GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gplots harmonicmeanp heatmaply htmltools httr IRanges jsonlite lattice limma locfit log4r magrittr MASS Matrix NBPSeq pander qvalue rmarkdown rmdformats Rsamtools RSQLite rtracklayer S4Vectors stringr SummarizedExperiment survcomp VennDiagram vsn yaml zoo]; }; metavizr = derive2 { name="metavizr"; version="1.18.0"; sha256="1grsk7aw1k9j9qgl033ca7azfifjhv07grpkjd57lpbasjchf9m2"; depends=[Biobase data_table digest epivizr epivizrData epivizrServer epivizrStandalone GenomeInfoDb httr metagenomeSeq phyloseq vegan]; }; methInheritSim = derive2 { name="methInheritSim"; version="1.16.0"; sha256="0ig4a0v5j2fdc380m4c97477yhwzhi4c8h6cybam12vnl6l8mfr9"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges methylKit msm S4Vectors]; }; methimpute = derive2 { name="methimpute"; version="1.16.0"; sha256="0dkq86962hrpn4i038bl2j8sjnh0qyfv7x81p5ldrfm55l393wyy"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges ggplot2 IRanges minpack_lm Rcpp reshape2]; }; @@ -1575,7 +1576,7 @@ in with self; { methylMnM = derive2 { name="methylMnM"; version="1.32.0"; sha256="1l87588frvl2cs9gf45axq90xhz94xx825zhm1w0gg7pjxgkwdmb"; depends=[edgeR statmod]; }; methylPipe = derive2 { name="methylPipe"; version="1.27.0"; sha256="0z2md9n1flzfsgsbzwffn4q6yfcjyj03bg1vi4phcknigbhg1viy"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; }; methylSig = derive2 { name="methylSig"; version="1.6.0"; sha256="0kp1ckxbidwlbv4690g236qhbh9rzjglx8gpmkihq67hfci7537v"; depends=[bsseq DelayedArray DelayedMatrixStats DSS GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - methylclock = derive2 { name="methylclock"; version="1.0.0"; sha256="0zx839894d1wp9jd0ksdhikzyww12caqcm18n6yca012d43qkija"; depends=[Biobase devtools dplyr dynamicTreeCut ExperimentHub ggplot2 ggpmisc ggpubr impute methylclockData minfi PerformanceAnalytics preprocessCore quadprog Rcpp RPMM tibble tidyr tidyverse]; }; + methylclock = derive2 { name="methylclock"; version="1.0.1"; sha256="00j1crflmpk02xxs0gfidrd04s8gaw3l1hiqs7qj522j13ks1q45"; depends=[Biobase devtools dplyr dynamicTreeCut ExperimentHub ggplot2 ggpmisc ggpubr impute methylclockData minfi PerformanceAnalytics preprocessCore quadprog Rcpp RPMM tibble tidyr tidyverse]; }; methylscaper = derive2 { name="methylscaper"; version="1.2.0"; sha256="0ygkx6fs8rjbqp4ry3am7vd3jsqx3nac1z1hdiib2pvgr7b6h1r7"; depends=[BiocParallel Biostrings data_table Rfast seqinr seriation shiny shinyFiles shinyjs SummarizedExperiment]; }; methylumi = derive2 { name="methylumi"; version="2.40.1"; sha256="1lfcsv8k9c4ndfwlbdk3vd7fq58100bfijyxklna41zf8m8kkkka"; depends=[annotate AnnotationDbi Biobase BiocGenerics FDb_InfiniumMethylation_hg19 genefilter GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; }; mfa = derive2 { name="mfa"; version="1.16.0"; sha256="1a672zd33bdg0pa490pxrr0jp8vnmnkngb3x12jsqqq56p4dzpjb"; depends=[Biobase coda dplyr ggmcmc ggplot2 magrittr MCMCglmm MCMCpack Rcpp tibble]; }; @@ -1590,7 +1591,7 @@ in with self; { miRcomp = derive2 { name="miRcomp"; version="1.24.0"; sha256="1kknr5m62ly03p5yzam5c3hwpaky25g3y92h6z3sg7xfjgsd9qpz"; depends=[Biobase KernSmooth miRcompData]; }; miRmine = derive2 { name="miRmine"; version="1.16.0"; sha256="0cx7181dsfclq2dplx1wcgnaqhxlgyfxsi0g4ii82yp1ka5fpml4"; depends=[SummarizedExperiment]; }; miRspongeR = derive2 { name="miRspongeR"; version="1.20.0"; sha256="06nczhbbvx1dmmwry88057zbvw3dq64qn5mn91ipi5qfnckb84wd"; depends=[clusterProfiler corpcor DOSE igraph linkcomm MCL org_Hs_eg_db Rcpp ReactomePA survival varhandle]; }; - mia = derive2 { name="mia"; version="1.2.2"; sha256="0ymikgpskgbx52a525qhyfn0b6jq2zgnda5asj3apq1x9yn1crb1"; depends=[ape BiocGenerics BiocParallel Biostrings DECIPHER decontam DelayedArray DelayedMatrixStats DirichletMultinomial dplyr IRanges MASS MultiAssayExperiment rlang S4Vectors scater scuttle SingleCellExperiment SummarizedExperiment tibble tidyr TreeSummarizedExperiment vegan]; }; + mia = derive2 { name="mia"; version="1.2.3"; sha256="1la5p4p2m1c4j3i3mzlm0in8vrivkbwrfil597yjlp0z4j9ai481"; depends=[ape BiocGenerics BiocParallel Biostrings DECIPHER decontam DelayedArray DelayedMatrixStats DirichletMultinomial dplyr IRanges MASS MultiAssayExperiment rlang S4Vectors scater scuttle SingleCellExperiment SummarizedExperiment tibble tidyr TreeSummarizedExperiment vegan]; }; miaSim = derive2 { name="miaSim"; version="1.0.0"; sha256="0870jvqwcg08fyzb4c9qsb6sk7r4sxqzrrfzijd25sdjbqly4zzx"; depends=[deSolve poweRlaw SummarizedExperiment]; }; miaViz = derive2 { name="miaViz"; version="1.2.0"; sha256="1plkr810cnb6kq7zqlmnx8c2mfa1gzsa92r1hj6xrqx9ykc8hapd"; depends=[ape BiocGenerics BiocParallel DelayedArray DirichletMultinomial dplyr ggnewscale ggplot2 ggraph ggtree mia purrr rlang S4Vectors scater SummarizedExperiment tibble tidygraph tidyr tidytree TreeSummarizedExperiment viridis]; }; microRNA = derive2 { name="microRNA"; version="1.52.0"; sha256="0x145alfh8qnbnhahxhfygcqc4xwiiirabl9k9nbcyadc5fawfc1"; depends=[Biostrings]; }; @@ -1611,14 +1612,14 @@ in with self; { mistyR = derive2 { name="mistyR"; version="1.2.1"; sha256="1a3z8d1n0asis3fmpzsiyj13mhrsm72lqx36y4bj6rf3vhzsxny3"; depends=[assertthat caret deldir digest distances dplyr filelock furrr ggplot2 MASS purrr R_utils ranger readr rlang rlist stringr tibble tidyr withr]; }; mitch = derive2 { name="mitch"; version="1.6.0"; sha256="1hllnfrc191dz4m8w9b1c4r2l0f44v9nrjan0kmmxhkki408isyn"; depends=[beeswarm echarts4r GGally ggplot2 gplots gridExtra knitr MASS plyr reshape2 rmarkdown]; }; mitoClone2 = derive2 { name="mitoClone2"; version="1.0.0"; sha256="1miycq8vc79i3x2nl44b5icsbnp23brljc3ic92byk0zdcp3dqh5"; depends=[deepSNV GenomicRanges ggplot2 pheatmap reshape2 Rhtslib S4Vectors]; }; - mixOmics = derive2 { name="mixOmics"; version="6.18.0"; sha256="0jwkb5scc33nfn2mibga8vp00pmc24ham71gpkbizvy43cy85icf"; depends=[BiocParallel corpcor dplyr ellipse ggplot2 ggrepel gridExtra igraph lattice MASS matrixStats rARPACK RColorBrewer reshape2 tidyr]; }; + mixOmics = derive2 { name="mixOmics"; version="6.18.1"; sha256="1wpskrnl2bry9m4k2djhjddcd8gpwf51gp5c3si1y7qxja78ql9f"; depends=[BiocParallel corpcor dplyr ellipse ggplot2 ggrepel gridExtra igraph lattice MASS matrixStats rARPACK RColorBrewer reshape2 tidyr]; }; mnem = derive2 { name="mnem"; version="1.10.0"; sha256="078x80j1jh7drv4fkly9gayiajszjvbjfk82aslicajh9hn04rmq"; depends=[cluster data_table e1071 flexclust ggplot2 graph lattice Linnorm matrixStats naturalsort Rcpp RcppEigen Rgraphviz snowfall tsne wesanderson]; }; moanin = derive2 { name="moanin"; version="1.2.0"; sha256="1fd4hi32krzwbpxz2qn1sh26zph94lvfkx4gc7dga911r3cms8y2"; depends=[ClusterR edgeR limma MASS matrixStats NMI reshape2 S4Vectors SummarizedExperiment topGO viridis zoo]; }; mogsa = derive2 { name="mogsa"; version="1.28.0"; sha256="0a7d81grd3dn1im4q0xss0qqvgbas9yh5lc24fz05hbfbzwgzr2l"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; }; monaLisa = derive2 { name="monaLisa"; version="1.0.0"; sha256="0idfq3l3sxx2gxcksvvk6ayyv2zb9hb5bls6dkincv7mraa20max"; depends=[BiocGenerics BiocParallel Biostrings BSgenome circlize ComplexHeatmap GenomeInfoDb GenomicRanges glmnet IRanges S4Vectors stabs SummarizedExperiment TFBSTools vioplot XVector]; }; monocle = derive2 { name="monocle"; version="2.22.0"; sha256="0wb2c1jf502lrfx3d0amb09fvhalrwxvpsp99jsab162v4hddg85"; depends=[Biobase BiocGenerics biocViews cluster combinat DDRTree densityClust dplyr fastICA ggplot2 HSMMSingleCell igraph irlba limma MASS Matrix matrixStats pheatmap plyr proxy qlcMatrix RANN Rcpp reshape2 Rtsne slam stringr tibble VGAM viridis]; }; mosaics = derive2 { name="mosaics"; version="2.32.0"; sha256="09qz4xl9xhzidw0w41bp0adkbhnasa309yn8rdi9nsfpswhaiysb"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges lattice MASS Rcpp Rsamtools S4Vectors]; }; - mosbi = derive2 { name="mosbi"; version="1.0.0"; sha256="07wnz85qcs9zqc9xjmkxs6nhdsbhgbi1bmsri299ng3ib92vlh6j"; depends=[akmbiclust BH biclust fabia igraph isa2 QUBIC RColorBrewer Rcpp RcppParallel xml2]; }; + mosbi = derive2 { name="mosbi"; version="1.0.1"; sha256="1sazkkwm95j6yrnmin22dh0ir08d6l3i85imqzlvyf1qigqgyk2d"; depends=[akmbiclust BH biclust fabia igraph isa2 QUBIC RColorBrewer Rcpp RcppParallel xml2]; }; motifStack = derive2 { name="motifStack"; version="1.38.0"; sha256="1ck6bbnrab8mbf70alfdsrcv6lq0fkvcy3klhcwyxxir7r9sgbaz"; depends=[ade4 Biostrings ggplot2 htmlwidgets XML]; }; motifbreakR = derive2 { name="motifbreakR"; version="2.8.0"; sha256="0lrgy64sv2ma6kylp4lsbwkg6ci1kn6qkk0cvzw3m4k3bgia1npj"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges grImport Gviz IRanges matrixStats MotifDb motifStack rtracklayer S4Vectors stringr SummarizedExperiment TFMPvalue VariantAnnotation]; }; motifcounter = derive2 { name="motifcounter"; version="1.18.0"; sha256="17yhhg423yjhaix9x2w2484l22vj6ra086ymzdfhygnjz5vanpmd"; depends=[Biostrings]; }; @@ -1742,7 +1743,7 @@ in with self; { plgem = derive2 { name="plgem"; version="1.66.0"; sha256="06w8xlw4j1fc9ipdgw55dvhp07f04icmhr20lqzwwhqd5pskrra3"; depends=[Biobase MASS]; }; plier = derive2 { name="plier"; version="1.64.0"; sha256="1sw89kici1h2xfg7zvrfdm7b7iw5n3mzwhyz82676w2vk0lgkpn4"; depends=[affy Biobase]; }; plotGrouper = derive2 { name="plotGrouper"; version="1.12.0"; sha256="191grbs8sy8jfxz9a6vsp9qf3zaqppp23fcl5qdrmfzims9krhlw"; depends=[colourpicker dplyr egg ggplot2 ggpubr gridExtra gtable Hmisc magrittr readr readxl rlang scales shiny shinythemes stringr tibble tidyr]; }; - plotgardener = derive2 { name="plotgardener"; version="1.0.1"; sha256="1p9h82pah34n1m44fkkwbi5m682icql8xxkf8l7i4dhx6mddv58g"; depends=[curl data_table dplyr ggplotify plyranges purrr RColorBrewer Rcpp rlang strawr]; }; + plotgardener = derive2 { name="plotgardener"; version="1.0.3"; sha256="0ndmbmfpxnxkg8x58xljcpa80lrv1dy2sp2n0nrkp0fnw4ymvhcc"; depends=[curl data_table dplyr ggplotify plyranges purrr RColorBrewer Rcpp rlang strawr]; }; plyranges = derive2 { name="plyranges"; version="1.14.0"; sha256="1s4zyr57x71v9ywdz6s27z158nhazwhmhkx3944l8zsqd5ciwnnc"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges IRanges magrittr rlang Rsamtools rtracklayer S4Vectors tidyselect]; }; pmm = derive2 { name="pmm"; version="1.26.0"; sha256="0vmkpqxf0lfgkbmyvham128201d33dv3wf9g31nrlwnxd0jcxszn"; depends=[lme4]; }; pmp = derive2 { name="pmp"; version="1.6.0"; sha256="15yggymqh329f2ibhmg9wmh76hbyn0gpz9k1cxzkvh787lss1w72"; depends=[ggplot2 impute matrixStats missForest pcaMethods reshape2 S4Vectors SummarizedExperiment]; }; @@ -1821,7 +1822,7 @@ in with self; { recount3 = derive2 { name="recount3"; version="1.4.0"; sha256="0ciaab6q0pix7zhz7948b8w3qki8dfy9lpa0wffhqjr7fvfh2km2"; depends=[BiocFileCache data_table GenomicRanges Matrix R_utils RCurl rtracklayer S4Vectors sessioninfo SummarizedExperiment]; }; recountmethylation = derive2 { name="recountmethylation"; version="1.4.0"; sha256="14b06842a97q9cggz6l7kfrlal1kaiq49j2f8sql4b2p6qdh4dpn"; depends=[BiocFileCache HDF5Array minfi R_utils RCurl rhdf5 S4Vectors]; }; recoup = derive2 { name="recoup"; version="1.22.0"; sha256="00qxkjjb4bx6vak50jjpl2l9y7myri9x7m17h01j2v2cncg48s55"; depends=[BiocGenerics biomaRt Biostrings circlize ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 httr IRanges Rsamtools RSQLite rtracklayer S4Vectors stringr]; }; - regionReport = derive2 { name="regionReport"; version="1.27.1"; sha256="0nf77g6x67dakbb3i55d65rcma4nya8lkjm5d8wbpq7hhvfhy2p1"; depends=[BiocStyle DEFormats derfinder DESeq2 GenomeInfoDb GenomicRanges knitr knitrBootstrap RefManageR rmarkdown S4Vectors SummarizedExperiment]; }; + regionReport = derive2 { name="regionReport"; version="1.28.1"; sha256="03d7nbfsk55mrlhzzr81mx3ndswkfj7fajyh1yz4jakjdclvzlxm"; depends=[BiocStyle DEFormats derfinder DESeq2 GenomeInfoDb GenomicRanges knitr knitrBootstrap RefManageR rmarkdown S4Vectors SummarizedExperiment]; }; regioneR = derive2 { name="regioneR"; version="1.26.0"; sha256="0y1mawzfvxrympc47q3isk96sl9d1bc8kdsxpm8rnhqg5bmgwya6"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges memoise rtracklayer S4Vectors]; }; regsplice = derive2 { name="regsplice"; version="1.20.0"; sha256="1vm1vvi5gfw5ssyi0qng3jmanvyl2mx08w9bi5990pj0j6ycc70y"; depends=[edgeR glmnet limma pbapply S4Vectors SummarizedExperiment]; }; regutools = derive2 { name="regutools"; version="1.6.0"; sha256="03gjlpn1pk2xkcbg4i1az505nq2gi6ajplq3asbg1fl9p2dbw8kh"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings DBI GenomicRanges Gviz IRanges RCy3 RSQLite S4Vectors]; }; @@ -1897,8 +1898,8 @@ in with self; { scone = derive2 { name="scone"; version="1.18.0"; sha256="1fqlwg195rzpwh35cj941vhmj2plzpn253skig6glr0z2sirr9r1"; depends=[aroma_light BiocParallel boot class cluster compositions diptest edgeR fpc gplots hexbin limma MatrixGenerics matrixStats mixtools rARPACK RColorBrewer rhdf5 RUVSeq SingleCellExperiment SummarizedExperiment]; }; scoreInvHap = derive2 { name="scoreInvHap"; version="1.16.0"; sha256="1y8b8yw0d0b65pka31lfcbdr5knvmihx2shcww76613j3vkk1m77"; depends=[BiocParallel Biostrings GenomicRanges snpStats SummarizedExperiment VariantAnnotation]; }; scp = derive2 { name="scp"; version="1.4.0"; sha256="1jjczmyihdbvrhv7n4qv58jm1wjw09axk6mixr2yd9fkhxkwc2fy"; depends=[dplyr magrittr matrixStats MsCoreUtils MultiAssayExperiment QFeatures rlang S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scran = derive2 { name="scran"; version="1.22.0"; sha256="1nyvbss4914giwzp5wiw9g4z5b6lr5iprbjrqlg4vpgnf1hz8k7l"; depends=[beachmat BH BiocGenerics BiocParallel BiocSingular bluster DelayedArray DelayedMatrixStats dqrng edgeR igraph limma Matrix metapod Rcpp S4Vectors scuttle SingleCellExperiment statmod SummarizedExperiment]; }; - scruff = derive2 { name="scruff"; version="1.12.0"; sha256="133frf2s1r4zcv868q1br74fsssrvjvj4jh0zxfzvv44sp9q7mvp"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 ggthemes plyr Rsamtools Rsubread rtracklayer S4Vectors scales ShortRead SingleCellExperiment stringdist SummarizedExperiment]; }; + scran = derive2 { name="scran"; version="1.22.1"; sha256="06lcxya6rpa8dv0il7m7fwyx0ci1y1jn16ff5lmvzf2mnr6q7lic"; depends=[beachmat BH BiocGenerics BiocParallel BiocSingular bluster DelayedArray DelayedMatrixStats dqrng edgeR igraph limma Matrix metapod Rcpp S4Vectors scuttle SingleCellExperiment statmod SummarizedExperiment]; }; + scruff = derive2 { name="scruff"; version="1.12.1"; sha256="0fikkh5pmsbgdgddn4mxmz4liapl7gm2fvs9wlfjvnx457423ydz"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 ggthemes plyr Rsamtools Rsubread rtracklayer S4Vectors scales ShortRead SingleCellExperiment stringdist SummarizedExperiment]; }; scry = derive2 { name="scry"; version="1.6.0"; sha256="1qp40k5l6splpj4gqgsgx07ys63j8gixdycsjzkgmd13l7awhdf2"; depends=[BiocSingular DelayedArray glmpca HDF5Array Matrix SingleCellExperiment SummarizedExperiment]; }; scuttle = derive2 { name="scuttle"; version="1.4.0"; sha256="1dbdb6yc6wk01dljy1vy6f0lf44crc5rxxnc4bhjk8i4iljz8467"; depends=[beachmat BiocGenerics BiocParallel DelayedArray DelayedMatrixStats GenomicRanges Matrix Rcpp S4Vectors SingleCellExperiment SummarizedExperiment]; }; sechm = derive2 { name="sechm"; version="1.2.0"; sha256="0b6izkd276d57vxfi7iip26zkvm7dyd1sml9bh5gcfr1k50ylfiv"; depends=[circlize ComplexHeatmap randomcoloR S4Vectors seriation SummarizedExperiment]; }; @@ -1915,7 +1916,7 @@ in with self; { seqbias = derive2 { name="seqbias"; version="1.42.0"; sha256="1q608c1madij8l52ljl3w52vi3cssr6ikny84yj6n8s7yvpx5jpr"; depends=[Biostrings GenomicRanges Rhtslib]; }; seqcombo = derive2 { name="seqcombo"; version="1.16.0"; sha256="0xyrjbvgrld5sy6g6sp79f43j93jnyccwg21il65fqrzb7z4d7xk"; depends=[Biostrings cowplot dplyr ggplot2 igraph magrittr yulab_utils]; }; seqsetvis = derive2 { name="seqsetvis"; version="1.14.0"; sha256="053y3vxn7ndwx21d41k5xf6wki37kxlr4ghvfq1w2f9w7cc59yb7"; depends=[data_table eulerr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 ggplotify IRanges limma pbapply pbmcapply png RColorBrewer Rsamtools rtracklayer S4Vectors UpSetR]; }; - sesame = derive2 { name="sesame"; version="1.12.1"; sha256="0wqa0zvmnkgl0bb6x9d3vdvnpbhiis76fp0j1zzj18453zjd9kzn"; depends=[BiocParallel DNAcopy e1071 fgsea GenomicRanges ggplot2 ggrepel illuminaio IRanges KernSmooth MASS matrixStats preprocessCore randomForest reshape2 S4Vectors sesameData stringr SummarizedExperiment tibble wheatmap]; }; + sesame = derive2 { name="sesame"; version="1.12.5"; sha256="11fbl5gd9na821l6sq74n73id6q198qx1s7w445i4rf3jvvhbj6v"; depends=[BiocParallel DNAcopy e1071 fgsea GenomicRanges ggplot2 ggrepel illuminaio IRanges KernSmooth MASS matrixStats preprocessCore randomForest reshape2 S4Vectors sesameData stringr SummarizedExperiment tibble wheatmap]; }; sevenC = derive2 { name="sevenC"; version="1.14.0"; sha256="06m6479ps7896zaks8jnnak8l7c6abbsdx56k3l5ir78681g4bq1"; depends=[BiocGenerics boot data_table GenomeInfoDb GenomicRanges InteractionSet IRanges purrr readr rtracklayer S4Vectors]; }; sevenbridges = derive2 { name="sevenbridges"; version="1.24.0"; sha256="03p7p1mwa3m8zvyz5761xmqhch6cfgy42cv0swwgj0n9jr83sc23"; depends=[curl data_table docopt httr jsonlite objectProperties S4Vectors stringr uuid yaml]; }; shinyMethyl = derive2 { name="shinyMethyl"; version="1.30.0"; sha256="0ihs4l4r46qyv7j8a2g590x86y0dwki2gzllwq2a31il34jrbgq5"; depends=[BiocGenerics IlluminaHumanMethylation450kmanifest matrixStats minfi RColorBrewer shiny]; }; @@ -1991,7 +1992,7 @@ in with self; { synapsis = derive2 { name="synapsis"; version="1.0.0"; sha256="1kqapzcd2zvmyaqshcrfxkkaf6k7kwaqnd6g4dhnjcf2wqnf6fs5"; depends=[EBImage]; }; synergyfinder = derive2 { name="synergyfinder"; version="3.2.2"; sha256="0kpvp0lamchbgs4p34pbq14y3zrmgk0pgil0qhsrm3kv1pizk1w8"; depends=[dplyr drc furrr future ggforce ggplot2 ggrepel gstat kriging lattice magrittr metR mice nleqslv pbapply plotly purrr reshape2 sp SpatialExtremes stringr tidyr tidyverse vegan]; }; synlet = derive2 { name="synlet"; version="1.24.0"; sha256="1xidxlkppap0x8h9iiyl78lcx50ckpg46n8pl49vz4435vd6grp2"; depends=[doBy dplyr ggplot2 magrittr RankProd RColorBrewer reshape2]; }; - systemPipeR = derive2 { name="systemPipeR"; version="2.0.1"; sha256="1r0qc1pyff9nvjix21xjd6fmka06ywr4ipr8szm52hq41hwaiqgq"; depends=[BiocGenerics Biostrings crayon GenomicRanges ggplot2 htmlwidgets magrittr Rsamtools S4Vectors ShortRead stringr SummarizedExperiment yaml]; }; + systemPipeR = derive2 { name="systemPipeR"; version="2.0.2"; sha256="0yy95gqss9mzqbab8rv2vy14vcn32kgnhlsl0ixqs60ckpfkh0pb"; depends=[BiocGenerics Biostrings crayon GenomicRanges ggplot2 htmlwidgets magrittr Rsamtools S4Vectors ShortRead stringr SummarizedExperiment yaml]; }; systemPipeShiny = derive2 { name="systemPipeShiny"; version="1.4.0"; sha256="0h803ijajf32igfknkaivlzrc323apzligq1j8ghpf02q7f5q830"; depends=[assertthat bsplus crayon dplyr drawer DT ggplot2 glue htmltools magrittr openssl plotly R6 rlang RSQLite rstudioapi shiny shinyAce shinydashboard shinydashboardPlus shinyFiles shinyjqui shinyjs shinytoastr shinyWidgets spsComps spsUtil stringr styler tibble vroom yaml]; }; systemPipeTools = derive2 { name="systemPipeTools"; version="1.2.0"; sha256="1n53nwb00zmrhb8h1fq4lqzdd87f74c4l1z24sid4xrjssylrnwr"; depends=[ape DESeq2 dplyr DT GGally ggplot2 ggrepel ggtree glmpca magrittr pheatmap plotly Rtsne SummarizedExperiment tibble]; }; tLOH = derive2 { name="tLOH"; version="1.2.0"; sha256="0k3lqlivxbv4gaipiskhpl34rjrmrn1x4243awxnvbhhvaqq5r50"; depends=[data_table dplyr GenomicRanges ggplot2 MatrixGenerics purrr scales VariantAnnotation]; }; @@ -2023,11 +2024,11 @@ in with self; { transcriptR = derive2 { name="transcriptR"; version="1.22.0"; sha256="1p5l2z3szx3qh02x7r81ajl7yc5wqsri6q6pzw83livmalcli5yy"; depends=[BiocGenerics caret chipseq e1071 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges pROC reshape2 Rsamtools rtracklayer S4Vectors]; }; transcriptogramer = derive2 { name="transcriptogramer"; version="1.16.0"; sha256="15kb8b99bk1an4gkxc3fik0kqfvvp93rh2kb5vrw6zl5s1vqhpjk"; depends=[biomaRt data_table doSNOW foreach ggplot2 igraph limma progress RedeR snow tidyr topGO]; }; transformGamPoi = derive2 { name="transformGamPoi"; version="1.0.0"; sha256="0fxf5iin0mqmwshm9vgcp2m7832jw11jlcis33saz1b40clajr22"; depends=[DelayedArray glmGamPoi HDF5Array Matrix MatrixGenerics SummarizedExperiment]; }; - transite = derive2 { name="transite"; version="1.12.0"; sha256="1w6nn720jrch4abm1z0hvpkniklq15n3ai6c0sxg11q6nkx4j028"; depends=[BiocGenerics Biostrings dplyr GenomicRanges ggplot2 ggseqlogo gridExtra Rcpp scales TFMPvalue]; }; + transite = derive2 { name="transite"; version="1.12.1"; sha256="0ykkwrhrmqh17dav2g14ispsnppk0w1kbqwhvjc36w3q9nbacaz2"; depends=[BiocGenerics Biostrings dplyr GenomicRanges ggplot2 ggseqlogo gridExtra Rcpp scales TFMPvalue]; }; transomics2cytoscape = derive2 { name="transomics2cytoscape"; version="1.4.0"; sha256="1jbk224x4nzlzd19ydy8bly4fs6l7qx7rk07i4zd4l6h622nz78k"; depends=[dplyr KEGGREST RCy3]; }; traseR = derive2 { name="traseR"; version="1.24.0"; sha256="0ch8hamhjjdcpi95gjqybzmk8vgx2j70gnlfiswvp8bjwf15hlfp"; depends=[BSgenome_Hsapiens_UCSC_hg19 GenomicRanges IRanges]; }; traviz = derive2 { name="traviz"; version="1.0.0"; sha256="03w4jpx5vp4cf3g77cks6dp8dkl66bbjsixr4j25xc3xr26g6kw0"; depends=[Biobase ggplot2 mgcv princurve RColorBrewer rgl SingleCellExperiment slingshot SummarizedExperiment viridis]; }; - treeio = derive2 { name="treeio"; version="1.18.0"; sha256="03gz378qrp6b9fcriqanfnphibqv4bxhvz48rigzkidkzz71wfaj"; depends=[ape dplyr jsonlite magrittr rlang tibble tidytree]; }; + treeio = derive2 { name="treeio"; version="1.18.1"; sha256="19i8jhvycv57zbxhpn5gx5ymdiws64kc3nidc00xh1j9a8xkj1aq"; depends=[ape dplyr jsonlite magrittr rlang tibble tidytree]; }; treekoR = derive2 { name="treekoR"; version="1.2.0"; sha256="1xrq8j7cr6s4a9171xqm1iw3a1dzdnmgyy68knilr42nxak064nn"; depends=[ape data_table diffcyt dplyr edgeR ggiraph ggplot2 ggtree hopach lme4 multcomp patchwork SingleCellExperiment tidyr]; }; trena = derive2 { name="trena"; version="1.16.0"; sha256="1kz68z0dixiiryd62diddq352h8sx6r15flxm7h715abcniniyjn"; depends=[AnnotationDbi biomaRt Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 DBI GenomicRanges glmnet lassopv MotifDb org_Hs_eg_db randomForest RMySQL RPostgreSQL RSQLite SNPlocs_Hsapiens_dbSNP150_GRCh38 vbsr WGCNA xgboost]; }; tricycle = derive2 { name="tricycle"; version="1.2.0"; sha256="1jcvbzpd5cfyyy6n6kvi0biyrv4m86z5fdmhjkg5wm4dm61r5n9q"; depends=[AnnotationDbi circular dplyr GenomicRanges ggplot2 IRanges RColorBrewer S4Vectors scater scattermore SingleCellExperiment SummarizedExperiment]; }; @@ -2068,7 +2069,7 @@ in with self; { wiggleplotr = derive2 { name="wiggleplotr"; version="1.18.0"; sha256="01y1rbmxjza7qx3q33k0r241if69hzkx9plgmj59wyji22lm7syi"; depends=[assertthat cowplot dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges purrr rtracklayer S4Vectors]; }; wpm = derive2 { name="wpm"; version="1.4.0"; sha256="1jcidw17bhf42ivywkcqgsd0i93mq32gishnz7h9syvv25qcbrsy"; depends=[Biobase cli config dplyr DT ggplot2 golem logging RColorBrewer rlang shiny shinycustomloader shinydashboard shinyWidgets stringr SummarizedExperiment]; }; wppi = derive2 { name="wppi"; version="1.2.0"; sha256="1spwa8p6w3pyw21dvd1lrhcz1sphdsmsd408jv55ss9nbgvgrp23"; depends=[dplyr igraph logger magrittr Matrix OmnipathR progress purrr RCurl rlang tibble tidyr]; }; - xcms = derive2 { name="xcms"; version="3.16.0"; sha256="0m6w68ndf2a4k148pbb0bbbgq57akzqgi9nf7k6ngkk22j3m7m95"; depends=[Biobase BiocGenerics BiocParallel IRanges lattice MassSpecWavelet MsCoreUtils MsFeatures MSnbase mzR plyr ProtGenerics RANN RColorBrewer robustbase S4Vectors SummarizedExperiment]; }; + xcms = derive2 { name="xcms"; version="3.16.1"; sha256="19kjyi6br9qp2pnp24shgbww3iqaaqxk9791w8w8qbd6sxijd143"; depends=[Biobase BiocGenerics BiocParallel IRanges lattice MassSpecWavelet MsCoreUtils MsFeatures MSnbase mzR plyr ProtGenerics RANN RColorBrewer robustbase S4Vectors SummarizedExperiment]; }; xmapbridge = derive2 { name="xmapbridge"; version="1.52.0"; sha256="1zsqhisbq6f9qgw9f0a6ixxh635h3qm17117yfns5nnfw73ndlgi"; depends=[]; }; yamss = derive2 { name="yamss"; version="1.20.0"; sha256="141hbryifm6na5shjyrbjwwksqnl75kqp1m2zl03l9sjqm0kapab"; depends=[BiocGenerics data_table EBImage IRanges limma Matrix mzR S4Vectors SummarizedExperiment]; }; yarn = derive2 { name="yarn"; version="1.20.0"; sha256="0nk4qzrwjiv8q39lgil9x25bm3gpzrnhd37d7754kpxhs2fsmw9d"; depends=[Biobase biomaRt downloader edgeR gplots limma matrixStats preprocessCore quantro RColorBrewer readr]; }; diff --git a/pkgs/development/r-modules/cran-packages.nix b/pkgs/development/r-modules/cran-packages.nix index 8671ca039c63..071ea9d373ce 100644 --- a/pkgs/development/r-modules/cran-packages.nix +++ b/pkgs/development/r-modules/cran-packages.nix @@ -4,7 +4,7 @@ # Rscript generate-r-packages.R cran >new && mv new cran-packages.nix { self, derive }: -let derive2 = derive { snapshot = "2021-11-14"; }; +let derive2 = derive { snapshot = "2021-11-30"; }; in with self; { A3 = derive2 { name="A3"; version="1.0.0"; sha256="017hq9pjsv1h9i7cqk5cfx27as54shlhdsdvr6jkhb8jfkpdb6cw"; depends=[pbapply xtable]; }; AATtools = derive2 { name="AATtools"; version="0.0.1"; sha256="08is383xhs2lc9wfffykcwqyl8mwcxfpk3lnvlpkp96hq9m9ikbf"; depends=[doParallel dplyr foreach magrittr]; }; @@ -76,7 +76,7 @@ in with self; { ANOVAShiny = derive2 { name="ANOVAShiny"; version="0.1.0"; sha256="1z8wi8c8j3rlchfk1vx101qz1r9j2jl5lfh72y5lqsisqxl2fyyz"; depends=[DescTools dplyr HH rhandsontable rmarkdown shiny]; }; ANOVAShiny2 = derive2 { name="ANOVAShiny2"; version="0.1.0"; sha256="0bnxfg5c37wi5g53jd0zqq31yx29zvlk2m2jh6jlwki8khpp9y00"; depends=[DescTools dplyr HH rhandsontable rmarkdown shiny]; }; ANOVAreplication = derive2 { name="ANOVAreplication"; version="1.1.5"; sha256="1d2r2cwpn9rdfbmiccag487pvsq6adn7b321c5z8i7n671h2wi26"; depends=[quadprog shiny]; }; - ANTs = derive2 { name="ANTs"; version="0.0.1"; sha256="164gg9sqhc2g8zwjar5nkksvxamysfh8fidsml5q788r424a6f78"; depends=[gtools Kendall lme4 Rcpp RcppArmadillo RcppEigen]; }; + ANTs = derive2 { name="ANTs"; version="0.0.13"; sha256="01zncc9zzv32cdfy718c2cdbscy404zdhwn35vf5ha81zpz3ql3a"; depends=[gtools Kendall lme4 Rcpp RcppArmadillo RcppEigen]; }; AOV1R = derive2 { name="AOV1R"; version="0.1.0"; sha256="0dv7k0mifybkarpwqyla5j6cvw9dcch09wvdq09ra9bsf4vyk652"; depends=[cellranger data_table lazyeval purrr]; }; APAtree = derive2 { name="APAtree"; version="1.0.1"; sha256="0vhvx2xp62avyq405jqn4i3z8awlifcs1lb527brxxhybrhnk4rv"; depends=[BH FD lwgeom raster Rcpp sf units]; }; APCI = derive2 { name="APCI"; version="1.0.3"; sha256="1fdv9zpc04i39zw8mg38mirh2nb8nkyf17s12fm83jp6x0jf7vbc"; depends=[data_table dplyr gee ggplot2 ggpubr magrittr stringr survey]; }; @@ -116,6 +116,7 @@ in with self; { ATAforecasting = derive2 { name="ATAforecasting"; version="0.0.55"; sha256="0p5n3hgx3iipssn7c81xn4zb4s1sz4mbr7bhslymblj9c8hy7vwm"; depends=[forecast Rcpp RcppArmadillo Rdpack seasonal stlplus stR timeSeries TSA tseries xts]; }; ATE = derive2 { name="ATE"; version="0.2.0"; sha256="1i46ivb7q61kq11z9v1rlnwad914nsdjcz9bagqx17vjk160mc0a"; depends=[]; }; ATR = derive2 { name="ATR"; version="0.1-1"; sha256="0via7zm3byzbdgrfw351fqvx0g5cj2z31bqfwh7kr99nqgjh0dyn"; depends=[partykit]; }; + ATbounds = derive2 { name="ATbounds"; version="0.1.0"; sha256="007gc9yjxwlhkb0mibxaa394xdiilfm8z6jbbqdn6wl986p07pg3"; depends=[mgcv]; }; ATmet = derive2 { name="ATmet"; version="1.2.1"; sha256="17lzb4qnxgvlwy5zaz250mb0c4ayk509700k8mj8zf4dgv51kxa3"; depends=[DiceDesign lhs metRology msm sensitivity]; }; AUC = derive2 { name="AUC"; version="0.3.0"; sha256="0ripcib2qz0m7rgr1kiz68nx8f6p408l1ww7j78ljqik7p3g41g7"; depends=[]; }; AUCRF = derive2 { name="AUCRF"; version="1.1"; sha256="00d7jcg2dyvf7sc9w7vxxd85m7nsbcmfqsavrv236vxfpfc9yn7i"; depends=[randomForest]; }; @@ -152,7 +153,7 @@ in with self; { AeRobiology = derive2 { name="AeRobiology"; version="2.0.1"; sha256="14d5gjx53v2wfij8m4br0k7lfi6x2frc8ny1li4g8c05qv2dvnbb"; depends=[circular data_table dplyr ggplot2 ggvis lubridate plotly scales tidyr writexl zoo]; }; AggregateR = derive2 { name="AggregateR"; version="0.1.1"; sha256="1s2q888bqx6ilisv5s4g8ryja97nz6cz4ycm4sw1i63l5wjrwljc"; depends=[data_table NCmisc tibble]; }; AgreementInterval = derive2 { name="AgreementInterval"; version="0.1.1"; sha256="1bvinzylvsaipa8mq15f45b6h37znavlrdl0rbrx1pqw52r7z8kv"; depends=[psych]; }; - AgroReg = derive2 { name="AgroReg"; version="1.2.0"; sha256="1yc0vaxqj970xz8qxamlka503ikz3f8dgdy25jlyira7zn3pbbww"; depends=[boot broom car crayon dplyr drc egg ggplot2 minpack_lm rcompanion]; }; + AgroReg = derive2 { name="AgroReg"; version="1.2.1"; sha256="0pdr39vimd749h4khw9jj48k3k6ysi50ppc8jcca4sr7rmq138dc"; depends=[boot broom dplyr drc egg ggplot2 minpack_lm rcompanion]; }; AhoCorasickTrie = derive2 { name="AhoCorasickTrie"; version="0.1.2"; sha256="0zh3y5jd8m0xbj6lqr01zvwj9qd1xr3iq7vd6sgr3g3qh4kqm5pq"; depends=[Rcpp]; }; AirSensor = derive2 { name="AirSensor"; version="1.0.8"; sha256="0wpfg3mry1vdyd9v1981hasizj1mn5wy60ig9swxlqdm7j11wxan"; depends=[countrycode cowplot dplyr dygraphs geodist geosphere GGally ggmap ggplot2 gridExtra httpcode httr jsonlite leaflet lubridate magrittr MazamaCoreUtils MazamaLocationUtils MazamaSpatialUtils openair PWFSLSmoke RColorBrewer readr rlang scales seismicRoll sp stringr tibble tidyr tidyselect worldmet xts zoo]; }; Ake = derive2 { name="Ake"; version="1.0"; sha256="1dj598xfdyjqvysc39a0d5gizgk367c5lkddmwmsqa8zjmvpr15a"; depends=[]; }; @@ -228,7 +229,7 @@ in with self; { AzureCognitive = derive2 { name="AzureCognitive"; version="1.0.1"; sha256="1mn3qw5g77x24qyhybhn1p3h4s9ymdafrj35i24f32ncr5abnd2f"; depends=[AzureAuth AzureRMR httr jsonlite]; }; AzureContainers = derive2 { name="AzureContainers"; version="1.3.2"; sha256="0lykvf4kk1q7b7ln4l8jlrxgqyvrg1cfnap4ak8zkhxmrgzqpc5f"; depends=[AzureGraph AzureRMR httr openssl processx R6]; }; AzureCosmosR = derive2 { name="AzureCosmosR"; version="1.0.0"; sha256="07bpmjxfyzk1aq8r06biiqsn2ibv7ymgqccxfxkbvszpfq79nryj"; depends=[AzureRMR curl httr jsonlite openssl uuid vctrs]; }; - AzureGraph = derive2 { name="AzureGraph"; version="1.3.1"; sha256="0afh98gj2klmxqidskamw0hp4b6cwap3y8gnf660np0j8szdy67i"; depends=[AzureAuth curl httr jsonlite openssl R6]; }; + AzureGraph = derive2 { name="AzureGraph"; version="1.3.2"; sha256="19wppl05w98s711jgkxxia5dckc8k6xr5zzs52dcvnh67r4cbjq7"; depends=[AzureAuth curl httr jsonlite openssl R6]; }; AzureKeyVault = derive2 { name="AzureKeyVault"; version="1.0.5"; sha256="15x0mkgn7pq2yk05l5vwvd744gxkz28nb5azc1yz502ayr1s6hnm"; depends=[AzureAuth AzureGraph AzureRMR httr jose jsonlite openssl R6]; }; AzureKusto = derive2 { name="AzureKusto"; version="1.0.6"; sha256="02wj1nzbs9l6aapk94p89gahbffmk3gy80l57bd1l0afpw0y3jr8"; depends=[AzureAuth AzureRMR DBI dplyr httr jsonlite openssl R6 rlang tibble tidyselect]; }; AzureQstor = derive2 { name="AzureQstor"; version="1.0.1"; sha256="1z7j8kakiarpw3q2rii7gl9zc2nsb49nzs1nxg1hgfyvcdhw2fcg"; depends=[AzureRMR AzureStor httr openssl]; }; @@ -284,7 +285,7 @@ in with self; { BDP2 = derive2 { name="BDP2"; version="0.1.3"; sha256="14m85sigx6hk0qzhfgih43m2lxp9xczmp9g3z4pping6msbnbdrz"; depends=[rmarkdown shiny shinyBS]; }; BDWreg = derive2 { name="BDWreg"; version="1.2.0"; sha256="07j6dy69q1as1nwgp2790wzpzmjich2256cddhl7n3h2rs1dja74"; depends=[coda doParallel DWreg foreach MASS]; }; BDgraph = derive2 { name="BDgraph"; version="2.64"; sha256="0pnzbw09c7amsvj8l4p1jnmss4rkbr1dsmagiygh8lj5fbrklgr4"; depends=[igraph]; }; - BE = derive2 { name="BE"; version="0.1.3"; sha256="14x6x0i5j5sxqk700am8kf73iv1bx8ba9563acgrjmp0c960p5f8"; depends=[rtf]; }; + BE = derive2 { name="BE"; version="0.1.4"; sha256="11x1qr8f047ns7awhq5j6h95svxccn0knhvvr49bamv6r0rl0ys3"; depends=[rtf]; }; BEACH = derive2 { name="BEACH"; version="1.3.1"; sha256="0biq6c74k8vb8ykafzf3blyi08rp65x1vaw3bfpwdc1ihc9wrgjr"; depends=[devtools DT haven plyr rJava rtf sas7bdat shiny WriteXLS xtable]; }; BED = derive2 { name="BED"; version="1.4.4"; sha256="1hbdjxh695607ppmk39xclh26k1bq9hrysyp8nc5axhhg1drpiff"; depends=[dplyr DT htmltools miniUI neo2R readr rstudioapi shiny stringr visNetwork]; }; BEDASSLE = derive2 { name="BEDASSLE"; version="1.5"; sha256="1bz3lr0waly9vj9adwhmgs3lq7zjdkcbvm3y9rnn72qlrwmv5fbn"; depends=[emdbook MASS matrixcalc]; }; @@ -295,7 +296,7 @@ in with self; { BET = derive2 { name="BET"; version="0.4.1"; sha256="1jaqsj3gyl1jdpl9m2jm10s9zpwr25s70nxn4yg14aik5grccd6r"; depends=[Rcpp]; }; BETS = derive2 { name="BETS"; version="0.4.9"; sha256="0daixk7mqmk2jq35i7mjaslz11gxbnnjgwxfvj8x1s88vz9l74sm"; depends=[DBI digest dplyr DT dygraphs forecast foreign ggplot2 grnn htmltools httr lubridate miniUI plotly rjson rmarkdown RMySQL rstudioapi rvest seasonal shiny sqldf stringr urca webshot xml2 zoo]; }; BFS = derive2 { name="BFS"; version="0.4.1"; sha256="1crlx3v6bsd5gi0f1hhlcykydbpqn9fryfw5k0ynlcivgif0ll9z"; depends=[janitor jsonlite lifecycle magrittr pxweb rvest tibble tidyRSS xml2]; }; - BFpack = derive2 { name="BFpack"; version="0.3.2"; sha256="04rb48wdab23i20lv7s2a2dafxxyvvl9zxpl17var038v6rd02vs"; depends=[bain extraDistr lme4 MASS Matrix mvtnorm pracma]; }; + BFpack = derive2 { name="BFpack"; version="1.0.0"; sha256="1z5j6gd8zv39advb4xmpcbixbg8n516h0gpqkblb8dnb4mbh6d1s"; depends=[bain extraDistr lme4 MASS Matrix mvtnorm pracma]; }; BGData = derive2 { name="BGData"; version="2.3.0"; sha256="0j6f5dk16vj1q3h1byrbyc2fdmgq102lx4mx8vyypsqxcds99csq"; depends=[BEDMatrix bigmemory bit crochet ff LinkedMatrix symDMatrix synchronicity]; }; BGGE = derive2 { name="BGGE"; version="0.6.5"; sha256="1h76c40y45xhf2vp9g0q5j9lfwh16q9axbk5c9aqn4md008xr1j2"; depends=[]; }; BGGM = derive2 { name="BGGM"; version="2.0.4"; sha256="0676viahmid0n89jhs93ci8l7rxpam7rn75mdbshgx7f1q3wqiih"; depends=[BFpack GGally ggplot2 ggridges MASS mvnfast network Rcpp RcppArmadillo RcppDist RcppProgress Rdpack reshape sna]; }; @@ -313,7 +314,7 @@ in with self; { BICORN = derive2 { name="BICORN"; version="0.1.0"; sha256="0mqk8vgp6jdk7f0paa06yqlibkd1y3vs69pg7i9mkvxmda7p4nkq"; depends=[]; }; BIEN = derive2 { name="BIEN"; version="1.2.4"; sha256="1dagrs54ciagm2mgqrvxl6k2akahr0qk63ifxqnks7iljm0x1gw6"; depends=[ape DBI doParallel fasterize foreach raster rgdal rgeos RPostgreSQL sf sp]; }; BIFIEsurvey = derive2 { name="BIFIEsurvey"; version="3.3-12"; sha256="1kphczvj3rxyjvi93cx2j714scvmmpqv5wrg5pdyy8l891jxsr89"; depends=[miceadds Rcpp RcppArmadillo]; }; - BIGDAWG = derive2 { name="BIGDAWG"; version="2.3.6"; sha256="1mlk2b293lr2vj0ydh96p9ynbvv67jnkqm9qxz9kcxq65b2i5cv3"; depends=[haplo_stats httr XML]; }; + BIGDAWG = derive2 { name="BIGDAWG"; version="3.0.3"; sha256="1zbikvhyaksbddv2kz8nqkidjy4qsfp6a8wwyxjy5a0wcnqnwsxf"; depends=[haplo_stats httr XML]; }; BIGL = derive2 { name="BIGL"; version="1.6.5"; sha256="1ksp88nspjd2si0kicv3j6fvb8i46phgpf6mw8ihfxkn9mrjbs2v"; depends=[ggplot2 MASS minpack_lm nleqslv numDeriv progress rgl robustbase scales]; }; BINCOR = derive2 { name="BINCOR"; version="0.2.0"; sha256="0x2s82jql429shk70bhjdy9kamz8dz5ymsxj6kp8ga1711bpwyq6"; depends=[pracma]; }; BINtools = derive2 { name="BINtools"; version="0.1.0"; sha256="061g1790m3gi88kj1avgxdnpdvj6n2mg5dh17c7vx4gx5g5x2q2d"; depends=[BH combinat dplyr mvtnorm Rcpp RcppEigen RcppParallel rstan StanHeaders stringi tibble]; }; @@ -333,6 +334,7 @@ in with self; { BMA = derive2 { name="BMA"; version="3.18.15"; sha256="06ibk6akpjzwpjb77qpb56hzpfhkyrkl153ljlg660rm8cpxbq2b"; depends=[inline leaps robustbase rrcov survival]; }; BMAmevt = derive2 { name="BMAmevt"; version="1.0.4"; sha256="10241cibzmgrmxzjw7fpw64qkayc1wig5xilahyc182841k4if6w"; depends=[coda]; }; BMRBr = derive2 { name="BMRBr"; version="0.2.0"; sha256="0v2ysap5jfkq9fc5blqlfhsv2bs8rqybmp5z4q3g6y3y7qzhypjw"; depends=[rvest xml2]; }; + BMRMM = derive2 { name="BMRMM"; version="0.0.1"; sha256="1wpj5pnm9hhc4gzk5lqxhzvg3j4mbwzhdg0hx2a5gqck9rvpvzni"; depends=[fields gsubfn logOfGamma MCMCpack mhsmm multicool pracma]; }; BMRSr = derive2 { name="BMRSr"; version="1.0.3"; sha256="0snb8xs22f1khnywkgrs8pj7w6hg2mfppng0q695xyh4ci157wam"; depends=[dplyr httr purrr readr rlang stringr tibble xml2]; }; BMRV = derive2 { name="BMRV"; version="1.32"; sha256="1j1cwjk3l7f06nqdwrqdyhzm43bb8hj5wgdd14zc1grxyfc9ya95"; depends=[BH]; }; BMS = derive2 { name="BMS"; version="0.3.4"; sha256="0z3mk1xd1fphf80kdbashkn04jwsr2bghms4d7nav3pw73q41wql"; depends=[]; }; @@ -344,7 +346,7 @@ in with self; { BNPMIXcluster = derive2 { name="BNPMIXcluster"; version="1.3"; sha256="1dnylvag24zqp93acdbn0ilbdzbn250pjjp6hjdd9d1zvla2ck85"; depends=[gplots MASS matrixcalc mvtnorm plyr Rcpp RcppArmadillo truncnorm]; }; BNPTSclust = derive2 { name="BNPTSclust"; version="2.0"; sha256="1ymvklv6d9684xzwdkvaxdjd1q20xmsf6kkfibn2wphlaqs2rh2n"; depends=[MASS mvtnorm]; }; BNPdensity = derive2 { name="BNPdensity"; version="2021.5.4"; sha256="16hm81wn08fjdamikzrmhpbsz31phkqxdqhp23w0pbxczk9gll47"; depends=[coda dplyr ggplot2 gridExtra survival tidyr viridis]; }; - BNPmix = derive2 { name="BNPmix"; version="0.2.9"; sha256="11xf1sqyf62wyqhdyvmb6zcb3cl7dr6cjywmvrf1nkrfdjcgf1pk"; depends=[coda ggplot2 ggpubr Rcpp RcppArmadillo RcppDist]; }; + BNPmix = derive2 { name="BNPmix"; version="1.0.0"; sha256="1bwmps4670jjb793yf7yxm9v8zz3m99019bwwha956w2pk9q1sjz"; depends=[coda ggplot2 ggpubr Rcpp RcppArmadillo RcppDist]; }; BNSL = derive2 { name="BNSL"; version="0.1.4"; sha256="0nrlx55364kgvkdpyaimgjxwnzmmdl1gmvyv3wkm8n2jyki92xxp"; depends=[bnlearn igraph Rcpp]; }; BNSP = derive2 { name="BNSP"; version="2.1.6"; sha256="0ig531n9sj50wn5nwljc2x4wijv5i28jx73knzz2kshb56p8sl7l"; depends=[coda corrplot cubature Formula ggplot2 gridExtra label_switching mgcv plot3D plyr threejs]; }; BNrich = derive2 { name="BNrich"; version="0.1.1"; sha256="0m3cz7npc7mwq2vj68hllbd2vf5xqw00jaxv1pm3c28mq7pb459j"; depends=[bnlearn corpcor glmnet graph]; }; @@ -377,11 +379,11 @@ in with self; { BTLLasso = derive2 { name="BTLLasso"; version="0.1-11"; sha256="1nz90jg74xzcwjxi9ppp7a78bg4976h2cmvlz140ss5403pnfbsk"; depends=[Matrix psychotools Rcpp RcppArmadillo stringr TeachingDemos]; }; BTM = derive2 { name="BTM"; version="0.3.6"; sha256="0ab0wr8nbwn1w1j9hpwfz52lm1sw0qk93713y9k0hpm3pw9dq4jr"; depends=[Rcpp]; }; BTSPAS = derive2 { name="BTSPAS"; version="2021.11.2"; sha256="1as1r050qabbm9k19lbcdkyjsblc7f6hd3x7dy38rc6rxzp2iilj"; depends=[actuar coda data_table ggforce ggplot2 gridExtra plyr R2jags reshape2 scales]; }; - BTYD = derive2 { name="BTYD"; version="2.4.2"; sha256="0yccq603vxjzhssb59icmps4iz0sn52wirwajx7995rz0zkfgfvh"; depends=[dplyr hypergeo Matrix optimx]; }; + BTYD = derive2 { name="BTYD"; version="2.4.3"; sha256="1szkpcmagpig32vbs7klx71avjlmbd0cn123ljpc3i02b55lma7z"; depends=[dplyr hypergeo Matrix optimx]; }; BTYDplus = derive2 { name="BTYDplus"; version="1.2.0"; sha256="1shai7kij20g3isd6l29i696pkzymr0qq2i9gzfsxmvdb4g4pcm2"; depends=[bayesm BTYD coda data_table mvtnorm Rcpp]; }; BTdecayLasso = derive2 { name="BTdecayLasso"; version="0.1.0"; sha256="0x1s2zvv3vnapk5wp8582zwflsqvgc8khkvl5ch9i70v739jxp15"; depends=[ggplot2 optimr]; }; BUCSS = derive2 { name="BUCSS"; version="1.2.1"; sha256="1nf0xpy5r49yfd0xydzxxxrc6isj14s8lswrf5nhh7g60nkkwcxr"; depends=[]; }; - BVAR = derive2 { name="BVAR"; version="1.0.1"; sha256="0nfq5ffa600hx3cbr85jbwawdfczrnr1dvg80qqz74v6lh3k8j7x"; depends=[mvtnorm]; }; + BVAR = derive2 { name="BVAR"; version="1.0.2"; sha256="12x6jkfgmskhvr8xgyfik8i5hkb8garq27k3nyvl69ickhgwrjk3"; depends=[mvtnorm]; }; BVARverse = derive2 { name="BVARverse"; version="0.0.1"; sha256="00nghvd5bavmn5hw89pcz20x5kbpxr707r5yvvsakn77rdis37ig"; depends=[BVAR generics ggplot2 rlang tidyr]; }; BVSNLP = derive2 { name="BVSNLP"; version="1.1.9"; sha256="1k2sr9wq0q7lq2hmgp75hzxy6v688lw5npwvpma88975yqi6ghiw"; depends=[doParallel foreach Rcpp RcppArmadillo RcppEigen RcppNumerical]; }; BWGS = derive2 { name="BWGS"; version="0.2.1"; sha256="1473lvkmpf2dsgnccwl5a8wp9yvddciqdql4naba4lwghimxy39w"; depends=[BGLR brnn e1071 glmnet randomForest rrBLUP stringi]; }; @@ -419,6 +421,7 @@ in with self; { BayesDA = derive2 { name="BayesDA"; version="2012.04-1"; sha256="0fp27cmhw8dsxr4mc1flm6qh907476kph8ch2889g9p31xm1psjc"; depends=[]; }; BayesDesign = derive2 { name="BayesDesign"; version="0.1.1"; sha256="1h69a18wp2z96a002x154d2vd1imzap3zm7yfssm5dh7igha18zc"; depends=[]; }; BayesESS = derive2 { name="BayesESS"; version="0.1.19"; sha256="023r5pxqa2ll3vyfmchdlcg6ay0qixphz24078g1immqp43mlrxm"; depends=[dfcrm LaplacesDemon MASS MatrixModels MCMCpack Rcpp RcppArmadillo RcppEigen]; }; + BayesFM = derive2 { name="BayesFM"; version="0.1.5"; sha256="1x6paj5fr036mry6yr32vrxx2kfz89c8dz39ky1nc6jg1q7x5a8i"; depends=[checkmate coda ggplot2 gridExtra plyr]; }; BayesFactor = derive2 { name="BayesFactor"; version="0.9.12-4.2"; sha256="1z083v7is21gm0a458jm5ph3xfdm7mh29a6sg2r1njq82f8x3s3g"; depends=[coda gtools hypergeo Matrix MatrixModels mvtnorm pbapply Rcpp RcppEigen stringr]; }; BayesGESM = derive2 { name="BayesGESM"; version="1.4"; sha256="0qw2byb48f67461m1k8a1rqh6a0c3zq1rc4ni9xzxv8dih4wkq0f"; depends=[Formula GIGrvg normalp]; }; BayesGOF = derive2 { name="BayesGOF"; version="5.2"; sha256="17wm0228xq3db431abyi9jr0q1q86nnajsn7hmy4dwzgvrlz5s0i"; depends=[Bolstad2 nleqslv orthopolynom VGAM]; }; @@ -429,7 +432,7 @@ in with self; { BayesLogit = derive2 { name="BayesLogit"; version="2.1"; sha256="0w3bzk39sxdskwikcz5i0xwfsll4sqgkpr8vw8jvzlcy6dl3yhis"; depends=[]; }; BayesMFSurv = derive2 { name="BayesMFSurv"; version="0.1.0"; sha256="1yxxzwjh1fgfh7qkzf9dfm3x0vbgb0v4p6bf6b5w14kvm06rzhkg"; depends=[coda FastGP MCMCpack mvtnorm Rcpp RcppArmadillo]; }; BayesMRA = derive2 { name="BayesMRA"; version="1.0.0"; sha256="005pygpa8bmr153naxnag7kn876lqwq34d8pzbj954nivlxl4zaw"; depends=[fields igraph Matrix mvnfast Rcpp RcppArmadillo spam]; }; - BayesMallows = derive2 { name="BayesMallows"; version="1.0.3"; sha256="1150nwds080cq9s8g1gfry73lz6nlqp8rmzia11d1pk3j04900zv"; depends=[cowplot dplyr ggplot2 HDInterval igraph PerMallows PLMIX purrr Rcpp RcppArmadillo Rdpack relations rlang sets tidyr]; }; + BayesMallows = derive2 { name="BayesMallows"; version="1.0.4"; sha256="0djv8jb3rgd7bs0f2xp5i1pd01myiaf2dncwmzrh4f93v2v07pby"; depends=[cowplot dplyr ggplot2 HDInterval igraph PerMallows purrr Rcpp RcppArmadillo Rdpack relations rlang sets tidyr]; }; BayesMassBal = derive2 { name="BayesMassBal"; version="1.0.0"; sha256="158vwfp5wn9g28fg48zmd95lfsr6flmcdm4igfw4cmgp4w0w69lq"; depends=[coda HDInterval LaplacesDemon Matrix pracma Rdpack tmvtnorm]; }; BayesMixSurv = derive2 { name="BayesMixSurv"; version="0.9.1"; sha256="19kf39881q00pap9afwvvggk4s4w3qpz17b7065nig1mvk8dnp8r"; depends=[survival]; }; BayesNI = derive2 { name="BayesNI"; version="0.1"; sha256="0zvr6rkb5zxgl53xby69d0j3yrfnlcmac6kwkxz77q5616w9dwq0"; depends=[]; }; @@ -441,7 +444,7 @@ in with self; { BayesPiecewiseICAR = derive2 { name="BayesPiecewiseICAR"; version="0.2.1"; sha256="1qrmw7zmygdzz84p76hyh2d8dx88b8xhbbd7radqm39g35zq5wz6"; depends=[mvtnorm]; }; BayesPostEst = derive2 { name="BayesPostEst"; version="0.3.2"; sha256="0r05by4w80j6hb22v3ibj686ixxbj7lkxq499fciz5lqs4lxzf3h"; depends=[brms carData caTools coda dplyr ggplot2 ggridges HDInterval MCMCpack R2jags R2WinBUGS reshape2 rjags rlang ROCR rstanarm runjags texreg tidyr]; }; BayesProject = derive2 { name="BayesProject"; version="1.0"; sha256="0b1xqw7f9kfbmr8m6fl9d2fpwr364s4a5vdw57l6i5rm6lszyfh5"; depends=[Rcpp RcppEigen Rdpack]; }; - BayesRGMM = derive2 { name="BayesRGMM"; version="1.1"; sha256="1clm01vp0irng082ifag9pnb6g8avxdskzy0jdy4c0n57hliwg6i"; depends=[abind batchmeans MASS msm mvtnorm plyr Rcpp RcppArmadillo RcppDist Rdpack reshape]; }; + BayesRGMM = derive2 { name="BayesRGMM"; version="2.0"; sha256="13f4mppiaj5j86ng9wx6jr9djzd2pvswzs5zdw9bx2y525qbhxhg"; depends=[abind batchmeans MASS msm mvtnorm plyr Rcpp RcppArmadillo RcppDist Rdpack reshape]; }; BayesRS = derive2 { name="BayesRS"; version="0.1.3"; sha256="0fhvnckabp0z1cdsbjgv3ijnzaxwhrk83fwcflgqbhvm3a9lzr77"; depends=[coda ggplot2 metRology reshape rjags]; }; BayesReversePLLH = derive2 { name="BayesReversePLLH"; version="1.4"; sha256="1wigp9692z0vf1vm3cpbl6wcgp3zyqzfbrkd344hi88421kj1yxj"; depends=[Rcpp RcppArmadillo]; }; BayesS5 = derive2 { name="BayesS5"; version="1.41"; sha256="0vs6s50h4gpxda9lbxfgn76k9kp81l62a6bv22r7ixsjlnd4baql"; depends=[abind Matrix snowfall splines2]; }; @@ -479,7 +482,7 @@ in with self; { BenfordTests = derive2 { name="BenfordTests"; version="1.2.0"; sha256="1nnj0w0zwcmg7maqmmpixx7alvsyxva370ssc26ahg6kxy5a621w"; depends=[]; }; Bergm = derive2 { name="Bergm"; version="5.0.3"; sha256="0wi8l2xwfiw8slg37z2milck6js26iy0yaj7m6sxgfh16j3n2gwx"; depends=[coda ergm Matrix matrixcalc MCMCpack mvtnorm network statnet_common]; }; Bessel = derive2 { name="Bessel"; version="0.6-0"; sha256="0iwm08nhlivi4zwcqdi296a1l4n4lfanfxhaysh9vcsyk1kpiacf"; depends=[Rmpfr]; }; - Bestie = derive2 { name="Bestie"; version="0.1.2"; sha256="0fyr0lcdqrsfj821dpbg2nqq6v9kw5xpyggx8p9dwn8bz04l7bza"; depends=[BiDAG Rcpp]; }; + Bestie = derive2 { name="Bestie"; version="0.1.3"; sha256="08999wvz0zm55b2yg2f4qdizl83fyppsij5lk20cwr60awbqc3gx"; depends=[BiDAG mvtnorm Rcpp]; }; BetaBit = derive2 { name="BetaBit"; version="1.4"; sha256="11cvl9m20ycc0zsxbdapjflgsiaxx4dzaygjhv948adjfi5fycbn"; depends=[digest]; }; BetaPASS = derive2 { name="BetaPASS"; version="1.1-1"; sha256="17q1bfmijv38zyaj5fxlylf5zmkqry4ca9wm5km6zpksgsg2kjjq"; depends=[betareg ggplot2 pbapply]; }; BeviMed = derive2 { name="BeviMed"; version="5.8"; sha256="12ngw3b05mqsf95svvkk5s8w0fs1yfbpbfk8x9a9v2yva5n65y7a"; depends=[Matrix Rcpp]; }; @@ -515,7 +518,6 @@ in with self; { BioFTF = derive2 { name="BioFTF"; version="1.2-0"; sha256="03r6fhpc4dqrcnbl73j9kav1l7rblgfldpbkl2p367vv20xggqih"; depends=[]; }; BioInsight = derive2 { name="BioInsight"; version="0.3.1"; sha256="129w9643l01y316hm0qcsmxzh5lsdmq6xmiz4rhmdh0dcnw2s93n"; depends=[edgeR knitr limma RColorBrewer wordcloud]; }; BioMark = derive2 { name="BioMark"; version="0.4.5"; sha256="1ifc72bayy3azbilajqqzl0is6z7l1zaadchcg3n8lhmjrv5sk3m"; depends=[glmnet MASS pls st]; }; - BioMedR = derive2 { name="BioMedR"; version="1.2.1"; sha256="0l3nmnqv0gzkbby4fhajbba910zpnbyckvxwds353pn54g9pcry7"; depends=[Biostrings ChemmineR fmcsR GOSemSim MASS org_Hs_eg_db pls randomForest rcdk RCurl rjson]; }; BioPET = derive2 { name="BioPET"; version="0.2.2"; sha256="0zgq7i37d0rnjhlkcrl44x62vhz0njsv2fldm64j9r4wc02z1q9n"; depends=[ggplot2 gridExtra pROC VGAM]; }; BioPETsurv = derive2 { name="BioPETsurv"; version="0.1.0"; sha256="0svwf8pzvlmlp8aacf70hzlg2h81m6lyhh4p73ixqw5v9bnyq6m0"; depends=[ggplot2 gridExtra survival]; }; BioProbability = derive2 { name="BioProbability"; version="1.0"; sha256="051m761zf079s0p4q0ambwqc22qjz2yajxrsmnjnxvqiaadaj1q7"; depends=[]; }; @@ -596,7 +598,7 @@ in with self; { CAISEr = derive2 { name="CAISEr"; version="1.0.16"; sha256="08br6hdpgf9y2fix299diwd8r3q4gylpbzll4knpxq0vi18a3hz3"; depends=[assertthat ggplot2 gridExtra pbmcapply]; }; CALANGO = derive2 { name="CALANGO"; version="1.0.5"; sha256="1a5573k5w3ldvgv8x384857ychn089fvir9yn0ryis26xmzkfvx5"; depends=[ape assertthat BiocManager dendextend DT ggplot2 heatmaply htmltools htmlwidgets knitr nlme pbmcapply pkgdown plotly rmarkdown taxize]; }; CALF = derive2 { name="CALF"; version="1.0.16"; sha256="1y3db8yxgman6jx8ghqcqfh201zj1fykinm9rhfbgb0ixk9dq1yc"; depends=[data_table ggplot2]; }; - CALIBERrfimpute = derive2 { name="CALIBERrfimpute"; version="1.0-5"; sha256="1fq9cm8qjbg4353al1xaxyajibpznz7ymqs0302c4z6cr7g4qibb"; depends=[mice mvtnorm randomForest]; }; + CALIBERrfimpute = derive2 { name="CALIBERrfimpute"; version="1.0-6"; sha256="0ghi6pkv9ki0iz4lkli3hkrsk6xiph2ha2pij6dg4wi7mcjdhsbi"; depends=[mice mvtnorm randomForest]; }; CAMAN = derive2 { name="CAMAN"; version="0.74"; sha256="0d932fbqzlxlhn7m8zfx7wr02pc7fm8398rym1jh2cdy2fk5im08"; depends=[mvtnorm sp]; }; CANSIM2R = derive2 { name="CANSIM2R"; version="1.14.1"; sha256="1dnzbd9lyqj3w80lx12qxcsbmv8wy6hxknyi5ijp99cfv7kaq1kc"; depends=[downloader Hmisc reshape2]; }; CARBayes = derive2 { name="CARBayes"; version="5.2.5"; sha256="0lrir2qqpignndvf8xjpyiwh9fc9iw2b0bin5vlxh88krhbkyx9f"; depends=[CARBayesdata coda dplyr GGally leaflet MASS MCMCpack Rcpp rgdal sp spam spdep truncnorm]; }; @@ -659,12 +661,13 @@ in with self; { CHsharp = derive2 { name="CHsharp"; version="0.4"; sha256="19mb5zzi9x4pm2z9jbha5dz4k5f1iqjv31aisyv4qh14k5ysdz2i"; depends=[KernSmooth scatterplot3d]; }; CIAAWconsensus = derive2 { name="CIAAWconsensus"; version="1.3"; sha256="0yhay4fp5lyf0sdcf807yvys17qz9cr5f5ikim25mq336p7fp03x"; depends=[Matrix mvtnorm numDeriv stringr]; }; CICA = derive2 { name="CICA"; version="0.1.0"; sha256="0f765c1sqvcg11071008vn6gnk0v0lwmlhnqxgqy0r8cw05s2ggq"; depends=[ica NMFN]; }; + CIDER = derive2 { name="CIDER"; version="0.99.0"; sha256="1qjr2xrcxhbkjjdv7714i6fyyn5rb5r9g79h5vnbd2bmswsgdyi3"; depends=[dbscan doParallel edgeR foreach ggplot2 igraph kernlab limma pheatmap Seurat viridis]; }; CIEE = derive2 { name="CIEE"; version="0.1.1"; sha256="03kq9cp0v41y0r2l9j5imcrsail2xsvlzhhhsrw454d4s9gqdql9"; depends=[survival]; }; CIFsmry = derive2 { name="CIFsmry"; version="1.0.1.1"; sha256="1m2m2zvg9ghy3bm2sll7jp4xm2vw58kc5xaxd2c9k82771m3a4j0"; depends=[]; }; CIM = derive2 { name="CIM"; version="1.0.0"; sha256="02l8rspiiv6vj6k0q6wpiazny3f2s4dsivsm7zb9cm90qh1rv2d7"; depends=[]; }; - CIMTx = derive2 { name="CIMTx"; version="1.0.0"; sha256="1lcx5222zpffy96q2868hqdm4ynjnpgbhqnsi9b0cw3vladvc0ri"; depends=[arm BART cowplot doParallel dplyr foreach ggplot2 magrittr Matching metR mgcv nnet stringr SuperLearner tidyr tmle twang WeightIt]; }; + CIMTx = derive2 { name="CIMTx"; version="1.1.0"; sha256="0091qdh10nxvzm4xxw0vw6k5pa7pi5mdfi5b9msfqfvzq00gyjfx"; depends=[arm BART cowplot doParallel dplyr foreach ggplot2 magrittr Matching metR mgcv nnet stringr SuperLearner tidyr tmle twang WeightIt]; }; CINID = derive2 { name="CINID"; version="1.3-0"; sha256="06n5bwjr44rx0m12xradzaca26rvh01mlimbn0gr3jfzkmyj2f1g"; depends=[]; }; - CINNA = derive2 { name="CINNA"; version="1.1.54"; sha256="1fvyxgcvdi3h7cysl08n7gzs5dmv3f9rcw1ds29l8n8w9rz6j7rb"; depends=[centiserve circlize corrplot dendextend factoextra FactoMineR GGally ggplot2 igraph intergraph network pheatmap plyr qdapTools Rtsne sna viridis]; }; + CINNA = derive2 { name="CINNA"; version="1.1.55"; sha256="0xw3ndjy262ljv6mk43ysb7mf4m02kcb5kzz1gzdxdwhj3v7ylgb"; depends=[centiserve circlize corrplot dendextend factoextra FactoMineR GGally ggplot2 igraph intergraph network pheatmap plyr qdapTools Rtsne sna viridis]; }; CINmetrics = derive2 { name="CINmetrics"; version="0.1.0"; sha256="1csh22b7ap7isnrjak7yp32hasxq8x4j094i9shrnzsz6sxcmc28"; depends=[]; }; CISE = derive2 { name="CISE"; version="0.1.0"; sha256="10mbi4v8dfdc9ngnrrmxpng8fnig5m8nv7799jksbcf6pnj8yv51"; depends=[far gdata glmnet MASS Matrix rARPACK]; }; CITAN = derive2 { name="CITAN"; version="2021.11-1"; sha256="15dy0n8yms8c01wp38wnn6541a9gq8q7x4sb76ggm9y4bldj6xj3"; depends=[agop DBI hash RSQLite stringi]; }; @@ -697,7 +700,7 @@ in with self; { CNull = derive2 { name="CNull"; version="1.0"; sha256="14hy86zg18hqxi63bfzrpkz70yrzfxp2v2pva5xnrvx9dmlyz820"; depends=[ape Matrix PhyloMeasures Rcpp]; }; COBRA = derive2 { name="COBRA"; version="0.99.4"; sha256="1r1cw12d7c148pcgcg08bfsr1q1s736kfpyyss6b4d7ny7wgmqy4"; depends=[]; }; COCONUT = derive2 { name="COCONUT"; version="1.0.2"; sha256="1qjrhxn6dkxyimdca3nslaiw3hncfpk1pk4v01mcrnz550z001nz"; depends=[]; }; - COINr = derive2 { name="COINr"; version="0.5.5"; sha256="1qj6ajdmqjw3gw5yrw4537azbnhn2q1fhiqfx0s9sb1hgfzhkxg3"; depends=[Amelia corrplot dplyr e1071 ggplot2 magrittr matrixStats openxlsx plotly purrr reactable readxl reshape2 rlang rmarkdown shiny stringr tibble tidyr]; }; + COINr = derive2 { name="COINr"; version="0.6.0"; sha256="1r2bxdymdz59icyxc9cym19fjiam41dnk2ikx9mh2qsamh8g0v6v"; depends=[Amelia corrplot dplyr e1071 ggplot2 magrittr matrixStats openxlsx plotly purrr reactable readxl reshape2 rlang rmarkdown shiny stringr tibble tidyr]; }; COMBAT = derive2 { name="COMBAT"; version="0.0.4"; sha256="0m700pl33frdpc9y16y4zyh1ixpardh0r5kmz8a78jrh1acn30id"; depends=[corpcor mvtnorm]; }; COMPoissonReg = derive2 { name="COMPoissonReg"; version="0.7.0"; sha256="144vf3vfn5msc8p67q65frza8xyi9nqccjq47fnv33w5h0d9wlxj"; depends=[Rcpp]; }; CONCUR = derive2 { name="CONCUR"; version="1.3"; sha256="1xkk5mbkysgrclv7km2pf4bnnm99a9q0dkb68vllrdmzsphjmxp9"; depends=[CompQuadForm dplyr mgcv]; }; @@ -708,7 +711,7 @@ in with self; { COST = derive2 { name="COST"; version="0.1.0"; sha256="06xgnsccd621ihlrdmnnh14vh83q1r2bnp3iqi7vp5553b3y4l3w"; depends=[copula mvtnorm]; }; COUNT = derive2 { name="COUNT"; version="1.3.4"; sha256="02f7779fy0d2bql88x5v9csbxljhnyvl8wb8h83xrmwl7kaxsdpy"; depends=[MASS msme sandwich]; }; COUSCOus = derive2 { name="COUSCOus"; version="1.0.0"; sha256="1ykqi72v8v1b3g9qy6h34dvk5fynzf1rl2mby65p08axmaba5798"; depends=[bio3d matrixcalc]; }; - COVID19 = derive2 { name="COVID19"; version="2.3.2"; sha256="0ipsjmvsd2sngwgchv9mbhipxqlsysaa4vmla198bprzj1r6m424"; depends=[dplyr tidyr]; }; + COVID19 = derive2 { name="COVID19"; version="3.0.0"; sha256="1nrkrhkiznp4aqravrgipx0vqpjl8zqc5b949fq893lnfzrlpgqq"; depends=[data_table R_utils]; }; COVIDIBGE = derive2 { name="COVIDIBGE"; version="0.1.7"; sha256="18b9wxl47qk1mrqa3nkc1krhdawlfw42a4hbd5mh9dcm4ax77bgz"; depends=[dplyr httr magrittr projmgr RCurl readr readxl survey tibble timeDate]; }; CP = derive2 { name="CP"; version="1.6"; sha256="18zblf13riiz3mq3hkvg6vhiwjzpsn6mvgc2p0bqyldy98v4aisd"; depends=[survival]; }; CPAT = derive2 { name="CPAT"; version="0.1.0"; sha256="0zygncwww3cazwmx06bhzq0g41xcqfpw307azdhygc8jmcy6qj71"; depends=[purrr Rcpp RcppArmadillo Rdpack]; }; @@ -812,7 +815,7 @@ in with self; { ChemoSpec2D = derive2 { name="ChemoSpec2D"; version="0.5.0"; sha256="05k46fn2i0ipn14zignxvykr8018wxql26x2r5b479hbkg1rk5s4"; depends=[ChemoSpecUtils colorspace ggplot2 readJDX]; }; ChemoSpecUtils = derive2 { name="ChemoSpecUtils"; version="1.0.0"; sha256="15w9v4g7myw0ygd9dvalz900yzgz5j2jnmw4j3zfp04fgm3wgbfq"; depends=[ggplot2 ggrepel magrittr plotly plyr]; }; ChillModels = derive2 { name="ChillModels"; version="1.0.2"; sha256="06hgg893anh5z8an4l1xl4liz7d0m79n21h116vkdlymayccydbr"; depends=[]; }; - ChineseNames = derive2 { name="ChineseNames"; version="1.1.0"; sha256="15dqr288skbh8fbnx1ikzla4wsvlxcd20qg8bd7w84f9cdi57m9z"; depends=[bruceR data_table]; }; + ChineseNames = derive2 { name="ChineseNames"; version="1.1.1"; sha256="1vkf4573iq7fqxwig7sphsbfpa9jbx36dayywdjx3n8nx8lksdqa"; depends=[bruceR data_table]; }; ChoR = derive2 { name="ChoR"; version="0.0-4"; sha256="08mildsx542zfm0kcdakcv7c71hb4jgbcq1lhidf0fz76zj1pzk1"; depends=[commonsMath rJava]; }; ChoiceModelR = derive2 { name="ChoiceModelR"; version="1.2"; sha256="0dkp3354gvrn44010s8fjbmkpgn1hpl4xbfs5xslql8sk8rw0n2c"; depends=[]; }; CholWishart = derive2 { name="CholWishart"; version="1.1.2"; sha256="0lms6bnd0czb25ir4ls0lxv4d2ygqiq8ampnv9j7l6hj28xmqyjj"; depends=[]; }; @@ -931,7 +934,7 @@ in with self; { ConsRank = derive2 { name="ConsRank"; version="2.1.2"; sha256="0vdjp2kawnmwz5rxp1p489l6pq61byyzpbs0w9m4rbal3whn65hf"; depends=[gtools proxy rgl rlist]; }; ConsRankClass = derive2 { name="ConsRankClass"; version="1.0.1"; sha256="02n6a3affm72vfhsjz90jl8x0qrvxsimlm1ng313s4zla515h8ap"; depends=[ConsRank janitor pracma proxy rlist]; }; ConsReg = derive2 { name="ConsReg"; version="0.1.0"; sha256="0ck188ahzprzvqdh2q05bcg9b68dw3xiqqb1xirbm4rp5chyr419"; depends=[adaptMCMC data_table DEoptim dfoptim FME forecast GA GenSA ggplot2 MCMCpack Metrics nloptr Rcpp rlang Rsolnp]; }; - ContaminatedMixt = derive2 { name="ContaminatedMixt"; version="1.3.4.1"; sha256="157lnlv0idcasi8y31zk9864kdqrlcl409gza4jx5k131qlp2san"; depends=[caret mclust mixture mnormt mvtnorm]; }; + ContaminatedMixt = derive2 { name="ContaminatedMixt"; version="1.3.6"; sha256="0bkpzx6a1w4560djj3r65y2z96h6wp8s0wscrf8mas4ianijaaf3"; depends=[caret mclust mixture mnormt mvtnorm]; }; ContourFunctions = derive2 { name="ContourFunctions"; version="0.1.1"; sha256="00p5bdiq8hj95lkr86iwyh50qw0d0d4gs9hhbzcix6lwn8dwqd3s"; depends=[]; }; ConvergenceClubs = derive2 { name="ConvergenceClubs"; version="2.2.1"; sha256="0mn0lnycz5pi821q52g1njjs2pcmvv8yynr13bh237c8cashk2n3"; depends=[lmtest sandwich]; }; ConvergenceConcepts = derive2 { name="ConvergenceConcepts"; version="1.2.2"; sha256="1pvcl0bgd4anrbn6wqxsd1s23ycsc7jhrk94yzwx67xx0qs9mmrw"; depends=[lattice tkrplot]; }; @@ -940,7 +943,7 @@ in with self; { CoordinateCleaner = derive2 { name="CoordinateCleaner"; version="2.0-20"; sha256="1n1k97imcg3n8nvl9759nqbzirxs011micx4qj2sf1d0bvnlrzs1"; depends=[dplyr geosphere ggplot2 raster rgbif rgdal rgeos rnaturalearth sp tidyselect]; }; CopCTS = derive2 { name="CopCTS"; version="1.0.0"; sha256="1j0bhkjk181y9k69442diswgwax5whmh5vfqydhf3b1r5ll1wkm3"; depends=[copBasic copula msm]; }; CopernicusDEM = derive2 { name="CopernicusDEM"; version="1.0.1"; sha256="0pf3y335agfkdnxjyfcfkbrk2999p5h0by959ahc1wxyrxdghxsl"; depends=[doParallel foreach gdalUtils glue sf]; }; - Copula_Markov = derive2 { name="Copula.Markov"; version="2.8"; sha256="0wyb80jj9zgh7kn0nah7dljps72083c92hpds94dw4ccmw6cfwf6"; depends=[]; }; + Copula_Markov = derive2 { name="Copula.Markov"; version="2.9"; sha256="18krq0q5i3j211g88sl153f1fa5crdcgclvl5lqawm7zykyzblh2"; depends=[]; }; Copula_Markov_survival = derive2 { name="Copula.Markov.survival"; version="1.0.0"; sha256="1sxg0ir39f4hj4m6imija0c88j513j6fflcp7xc0599iglwsrbvs"; depends=[survival]; }; Copula_surv = derive2 { name="Copula.surv"; version="1.1"; sha256="1zs2jvb07948g2aspy8877j4hdzavd57lmv4x2yrf6gb4xzs3x3n"; depends=[]; }; CopulaCenR = derive2 { name="CopulaCenR"; version="1.1.3"; sha256="03hd6cw1mymkdcjf211g2c4m049d61hva8n4nxsrp2lpzxq3yz3s"; depends=[caret copula corpcor flexsurv icenReg magrittr plotly pracma survival]; }; @@ -1038,7 +1041,7 @@ in with self; { DDoutlier = derive2 { name="DDoutlier"; version="0.1.0"; sha256="1az5zq0l3kj959572mlpc4zl73f16iag0yrs217fa9m8xpd3c2sd"; depends=[dbscan pracma proxy]; }; DECIDE = derive2 { name="DECIDE"; version="1.2"; sha256="18kn2pm9r0ims2k1jfsfzh258wwxz0xg86rsbwgq6szh0azlq3qy"; depends=[]; }; DEEPR = derive2 { name="DEEPR"; version="0.1"; sha256="0q8970q3gpjxwxdf2bkhpnqrxpm00w27b20a9sn9vv314rn1n7s8"; depends=[dirmult]; }; - DEEVD = derive2 { name="DEEVD"; version="1.2.2"; sha256="0rvz78b0mrfppshyks8srpk5rc8sm0ilgbkz7rb6j3v0306sqk8d"; depends=[evd]; }; + DEEVD = derive2 { name="DEEVD"; version="1.2.3"; sha256="1wa3h0z5sk8zrwblzb8w7hgj9yqw56vqi3vsnpva53qynf42r2n7"; depends=[evd]; }; DELTD = derive2 { name="DELTD"; version="2.6.7"; sha256="1cghz224pmh06yk00jx956nlkk45p2ri81v1jjhx27xjagp4jzcs"; depends=[]; }; DEMOVA = derive2 { name="DEMOVA"; version="1.0"; sha256="09dqhhhihphhdnplmhdq4q5zwc0qvqhirdrxa9x6fr43vwa5zfp4"; depends=[leaps]; }; DEPONS2R = derive2 { name="DEPONS2R"; version="1.0.3"; sha256="1h7bia4l8myjnwhjp576v6wkr0p63hcgfdmqrxhiam9xwl7kp4ar"; depends=[jsonlite raster rgdal rgeos sp xml2]; }; @@ -1099,10 +1102,11 @@ in with self; { DOvalidation = derive2 { name="DOvalidation"; version="1.1.0"; sha256="1mzws3w7djpxnfqxjcqwgia7p17kb0qlnzj6qcfg2m1vamb1cn2z"; depends=[]; }; DPBBM = derive2 { name="DPBBM"; version="0.2.5"; sha256="1qypxrcm3sb727lqb09ssjf3hblixqayw3qsyql01imrxwm609i2"; depends=[CEoptim gplots tmvtnorm VGAM]; }; DPP = derive2 { name="DPP"; version="0.1.2"; sha256="1qalcm4gwh03qpy07d0p323ccq8xmk04v6z30g7wg6ic613bqg7m"; depends=[coda Rcpp]; }; - DPQ = derive2 { name="DPQ"; version="0.4-4"; sha256="1x0139g7wgbvk4a6iljn4rpyahgm727iad4zg2mvh8lm8c9avsss"; depends=[sfsmisc]; }; + DPQ = derive2 { name="DPQ"; version="0.5-0"; sha256="0hps9pfhxdgmq0gvdvycj6xj0syadbba6cfahr9hqx43wnfngxk1"; depends=[sfsmisc]; }; DPQmpfr = derive2 { name="DPQmpfr"; version="0.3-1"; sha256="0f3l6dhiqnlix5vdz65pnxic43hcd4xiz64sh3cp8xs8cbmlnqcw"; depends=[DPQ gmp Rmpfr]; }; DPWeibull = derive2 { name="DPWeibull"; version="1.7"; sha256="1z261fhx5dr3yxfy10jrnj5xpc5i8bcs169wqp9p32frwpz20ad3"; depends=[binaryLogic prodlim Rcpp RcppArmadillo survival truncdist]; }; DPtree = derive2 { name="DPtree"; version="1.0.1"; sha256="0d7zf695lwkx4gv50f08cbi3p3mjjay0qgrbmvybf9m15i4zmyd7"; depends=[MASS MCMCpack plyr Rdpack]; }; + DR_SC = derive2 { name="DR.SC"; version="2.3"; sha256="0hrp2d6frivj2q8js103gla5wrzqy814izzji6n8lc4x088dwrjg"; depends=[CompQuadForm cowplot ggplot2 GiRaF MASS Matrix mclust purrr RColorBrewer Rcpp RcppArmadillo Seurat spatstat_geom]; }; DRAYL = derive2 { name="DRAYL"; version="1.0"; sha256="0cf5pyx6nwh8srdylpnmymv3dr67fm6qqpwd1hvj1wmyfc8fznpp"; depends=[cubature pracma RConics rmutil]; }; DRDID = derive2 { name="DRDID"; version="1.0.3"; sha256="1xlz4vc43myxximzcf87bk52pd5rplcbi5655m18xk7jx2l95ksb"; depends=[BMisc trust]; }; DRDRtest = derive2 { name="DRDRtest"; version="0.1"; sha256="1vrvwr441w526a80s0r2fwqlllvn05ir8v2152jz2wxrwhnpq1s0"; depends=[KernSmooth SuperLearner]; }; @@ -1127,7 +1131,7 @@ in with self; { DSsim = derive2 { name="DSsim"; version="1.1.5"; sha256="0dr8dc91m7s5c198k9cb26a09f14wb8ihr46c0mr9cg33l2wf3nv"; depends=[fields mgcv mrds rgeos shapefiles sp splancs]; }; DStree = derive2 { name="DStree"; version="1.0"; sha256="14wba25ylmsyrndh007kl377dv4r34wr1555yxl6kyxrs4yg3jir"; depends=[Ecdat pec Rcpp rpart rpart_plot survival]; }; DSviaDRM = derive2 { name="DSviaDRM"; version="1.0"; sha256="1hj2pgnldrpgapwwz1kf4k6mvyzwdvb1i6czd7sbimsx5hafwps8"; depends=[igraph ppcor]; }; - DT = derive2 { name="DT"; version="0.19"; sha256="04rv1rprqlc56hycxpqkbmwmq4wjvmanq2lwxrflmf2s46pbv9ms"; depends=[crosstalk htmltools htmlwidgets jquerylib jsonlite magrittr promises]; }; + DT = derive2 { name="DT"; version="0.20"; sha256="17xs18i439p15agyk7z2xyyrwgrpn5pw09kd3jwxn7qhxi4pyvf6"; depends=[crosstalk htmltools htmlwidgets jquerylib jsonlite magrittr promises]; }; DTAT = derive2 { name="DTAT"; version="0.3-4"; sha256="1ddmih8cxbgc1p4m0sm8gdbnf0d3ka8z7014zd4aykz75j3pr002"; depends=[data_table dplyr Hmisc jsonlite km_ci pomp r2d3 shiny survival]; }; DTAXG = derive2 { name="DTAXG"; version="0.1.0"; sha256="1jxa0ix0z35i0xdnjl698j8iqjmp6nz8ckah9bap5ay9rkq0xd7f"; depends=[]; }; DTAplots = derive2 { name="DTAplots"; version="1.0.2.5"; sha256="1jwfh8j8ahaj2z19g2f70r652j77q4f0b7j91mggsb0dgk449342"; depends=[]; }; @@ -1169,7 +1173,7 @@ in with self; { DataSpaceR = derive2 { name="DataSpaceR"; version="0.7.5"; sha256="0n7f7092lmhac1xb7yw4a68nmnk0cad2j6lkaj2v0d1nl2q7pvam"; depends=[assertthat curl data_table digest httr jsonlite R6 Rlabkey]; }; DataVisualizations = derive2 { name="DataVisualizations"; version="1.2.2"; sha256="1fqsim2kz57f4c9isj6pivxnsabhdpj17dpyly4d4jh5bgyscqzm"; depends=[ggplot2 pracma Rcpp RcppArmadillo reshape2 sp]; }; DataViz = derive2 { name="DataViz"; version="0.2.8"; sha256="1dr5nvdzc63x9ymlysvv5i8b7zcffq13pa39q0ychdwr1s3x7vzw"; depends=[Rcpp tibble]; }; - DatabaseConnector = derive2 { name="DatabaseConnector"; version="4.0.2"; sha256="10ln53hfgkd3janlk11s3mi99r69xaaz7p9lbsi6s83yhf4kgv3r"; depends=[bit64 DBI rJava rlang SqlRender stringr urltools]; }; + DatabaseConnector = derive2 { name="DatabaseConnector"; version="5.0.0"; sha256="1gv5awdd6xm72j7w787aiq8y8zbf56xswkpr67zjynhkh8q6jrf1"; depends=[bit64 DBI readr rJava rlang SqlRender stringr urltools]; }; DatabaseConnectorJars = derive2 { name="DatabaseConnectorJars"; version="1.1.0"; sha256="18m6ynj30r5xdy51b3s39h0jcz1k2wgka888skr6ds2233lhqk2w"; depends=[rJava]; }; DatabionicSwarm = derive2 { name="DatabionicSwarm"; version="1.1.5"; sha256="1m5ydlyj54ybw38b6i78krrvqj29bp24x19xbqz9fgwpqimnv79y"; depends=[deldir GeneralizedUmatrix Rcpp RcppArmadillo]; }; DatastreamDSWS2R = derive2 { name="DatastreamDSWS2R"; version="1.8.2"; sha256="018733gm5z90qhbci6khxx27pn074si176mwnlq53bd6r722jiwm"; depends=[dplyr foreach httr jsonlite stringi stringr xts zoo]; }; @@ -1199,7 +1203,7 @@ in with self; { DepLogo = derive2 { name="DepLogo"; version="1.2"; sha256="13y3akmrj5x1mn1sgha1jryzswg4kqxwswbm3m5z92mcm2zw4r9l"; depends=[]; }; DepthProc = derive2 { name="DepthProc"; version="2.1.4"; sha256="0fa15qcga72db040rscmvp31jdi477wxyyx4c3mwmpjhf81a5978"; depends=[colorspace geometry ggplot2 lattice MASS np Rcpp RcppArmadillo rrcov sm zoo]; }; Deriv = derive2 { name="Deriv"; version="4.1.3"; sha256="130g3mv0z9sqs6y23a0a94512iiw05yr6fp378vhdxxbignzbnyv"; depends=[]; }; - DescTools = derive2 { name="DescTools"; version="0.99.43"; sha256="1zx4wwry7pph21q37r0r1vgx616pki232ych2wl9z2s2fmclwg4c"; depends=[BH boot data_table Exact expm gld MASS mvtnorm Rcpp rstudioapi]; }; + DescTools = derive2 { name="DescTools"; version="0.99.44"; sha256="04wp3sp6sahgq167465y38y13h1ia5a4zqazysacpjxd1if0578j"; depends=[BH boot data_table Exact expm gld MASS mvtnorm Rcpp rstudioapi]; }; DescToolsAddIns = derive2 { name="DescToolsAddIns"; version="1.9"; sha256="12zwhy05wkwxldjyjxqcfsww73pxyni17c5g3b0slrxk6ag13wl7"; depends=[DescTools foreign manipulate rstudioapi writexl]; }; DescrTab2 = derive2 { name="DescrTab2"; version="2.0.7"; sha256="1yknr146v7d6ahm7glarqzpk4z4nyg9mwmgnrsfszwwryzpck5ii"; depends=[cli DescTools dplyr exact2x2 flextable forcats kableExtra magrittr nlme officer rlang scales stringr tibble tidyselect]; }; DescribeDisplay = derive2 { name="DescribeDisplay"; version="0.2.7"; sha256="0241mbz0y3ala7fsb4fwjd0xigsk0wq77hfrjyvnnp97rfjfzmcv"; depends=[GGally ggplot2 plyr reshape2 scales]; }; @@ -1273,7 +1277,6 @@ in with self; { Dodge = derive2 { name="Dodge"; version="0.9-2"; sha256="0767n6hyspqrv5cgx3ghhai0qffj6haga7s86pv7mq8zvjcxjlzv"; depends=[]; }; Dominance = derive2 { name="Dominance"; version="1.2.0"; sha256="1z2gcs7myf90986gzw9g3914ph5cyg6pq6k53h4z566x883q8maz"; depends=[chron igraph]; }; DominoDataCapture = derive2 { name="DominoDataCapture"; version="0.1.1"; sha256="168nvarg58x0w7bi365rd810gl5xz1b2kv8jv0myb7qwxdw1igm4"; depends=[lgr rjson uuid]; }; - DominoPredictionLogging = derive2 { name="DominoPredictionLogging"; version="0.1.0"; sha256="1qzh8inzqk1s6cw9bsl7hazdf6cbfr11zs22723wl4xs31inp1lg"; depends=[lgr rjson uuid]; }; DoseFinding = derive2 { name="DoseFinding"; version="1.0-2"; sha256="15wpr8wiqjar9hlgcv8y2gjxv6531q3b69jxh2kq10k7bni3rshb"; depends=[lattice mvtnorm]; }; DoubleCone = derive2 { name="DoubleCone"; version="1.1"; sha256="1kbvsj93nn2306s6pgqiiznmlcn2nqsgcxinihl613ivczxhzpqg"; depends=[coneproj MASS Matrix]; }; DoubleExpSeq = derive2 { name="DoubleExpSeq"; version="1.1"; sha256="00xpj5xmpgmvp6h76imkmghrnlfk6c50ydvv0jram6m6ix3z8323"; depends=[numDeriv]; }; @@ -1495,7 +1498,7 @@ in with self; { EwR = derive2 { name="EwR"; version="1.4"; sha256="1i0cwyylr1lqilykn1q2y1ad2gawfqkw9c51g04yn061c623pkam"; depends=[]; }; ExPanDaR = derive2 { name="ExPanDaR"; version="0.5.3"; sha256="1y4ccyvlvdx9lcgpyns6k2npc0rzwk8db4bmbi3pq9xmv7ycgmcz"; depends=[corrplot dplyr DT ggplot2 kableExtra lmtest multiwayvcov openssl plm rio rlang scales shiny shinycssloaders stargazer tictoc tidyr zip]; }; ExPosition = derive2 { name="ExPosition"; version="2.8.23"; sha256="0x9400ggmgrnaish0cfgnyvw549g4ibfv9aj6vzq7j68n58vq405"; depends=[prettyGraphs]; }; - Exact = derive2 { name="Exact"; version="3.0"; sha256="0acm01njg3arlzwknv5v1sdsz5ab0bdh04sn1bmf91hcg3li8qd7"; depends=[rootSolve]; }; + Exact = derive2 { name="Exact"; version="3.1"; sha256="1kz3hw11sl142mai4ly2r85rwdbjz8q7b38ybmjym6r0n5qmqzyn"; depends=[rootSolve]; }; ExactCIdiff = derive2 { name="ExactCIdiff"; version="1.3"; sha256="1vayq8x7gk1fnr1jrlscg6rb58wncriybw4m1z0glfgzr259103y"; depends=[]; }; ExactMultinom = derive2 { name="ExactMultinom"; version="0.1.2"; sha256="1ygsiwcsmda0pbp7lzr03sb461mr9fff7hxp1lil40y9z0xgdmmb"; depends=[Rcpp]; }; ExamPAData = derive2 { name="ExamPAData"; version="0.5.0"; sha256="1wjzg5b3xcl5njk95h2c8xz4k727d62182nbf49qrvd3nbd3bscj"; depends=[]; }; @@ -1525,7 +1528,9 @@ in with self; { FAIRmaterials = derive2 { name="FAIRmaterials"; version="0.0.2"; sha256="169hcwjm0plhkqbhz3b5cqgc2nnkibn94cimrs39sn9z62radb7x"; depends=[dplyr glue stringr]; }; FAMILY = derive2 { name="FAMILY"; version="0.1.19"; sha256="1912l2zj2cmh8yx8lkg8fpgvfddn6wbi1vrr4yx04mh73gk1s5mk"; depends=[pheatmap pROC]; }; FAMT = derive2 { name="FAMT"; version="2.5"; sha256="0mn85yy9zmiklfwqjbhbhzbawwp2yqrm9pvm8jhasn9c3kw1pcp2"; depends=[impute mnormt]; }; + FAMetA = derive2 { name="FAMetA"; version="0.1.0"; sha256="12n2mwl36gd73c6f2gy075bfp14r7vb9r1zls9jmw2jp2h6szkx8"; depends=[accucor gplots gtools knitr LipidMS minpack_lm plyr rmarkdown scales tidyr]; }; FAMoS = derive2 { name="FAMoS"; version="0.3.0"; sha256="14gr9wv9bpibk0rrzzwijvdncx1fgnpbv55nqzbb4jhq7fdckmsa"; depends=[future R_utils]; }; + FAO56 = derive2 { name="FAO56"; version="0.1.0"; sha256="0dl56gdsmx3ixxakz2xqrirss5xxbz62mvp7jdrgaizrn8xd802i"; depends=[]; }; FAOSTAT = derive2 { name="FAOSTAT"; version="2.2.1"; sha256="1i1zd62qv1zrrnpkrchhk3maj9pfabvbc960gck3ry8l0ns926q9"; depends=[classInt data_table ggplot2 labeling MASS plyr RJSONIO XML]; }; FARDEEP = derive2 { name="FARDEEP"; version="1.0.1"; sha256="0blvjakcpkh9vpxryk7qyaqnija0r375ckv37kjlr34xg8pg9qnm"; depends=[nnls preprocessCore]; }; FASeg = derive2 { name="FASeg"; version="0.1.9"; sha256="0lazx8dyycyycr8467m9rkxkxhp4r2w737kpkb40y59wncmbvkik"; depends=[]; }; @@ -1568,7 +1573,6 @@ in with self; { FLLat = derive2 { name="FLLat"; version="1.2-1"; sha256="0306bpwp2az4x4m5sv88hlh7vs0y5isfby7lxrn2gjnk76gg6mw1"; depends=[gplots]; }; FLR = derive2 { name="FLR"; version="1.0"; sha256="0k50vi73qj7sjps0s6b2hq1cmpa4qr2vwkpd2wv2w1hhhrj8lm0n"; depends=[combinat]; }; FLSSS = derive2 { name="FLSSS"; version="8.6.6"; sha256="0kw28zmvgdy4zmj2vnrs84n0rg6jvqj3x8f3ihjjkzkwqrqyiia9"; depends=[Rcpp RcppParallel]; }; - FLightR = derive2 { name="FLightR"; version="0.5.1"; sha256="14188r6kk194ir0l8byaqlly4lsg8w58lw5xx2s4abyhbn35kwq8"; depends=[bit CircStats circular fields GeoLight ggmap ggplot2 ggsn maptools mgcv nlme RcppArmadillo rgdal rgeos sp truncnorm]; }; FMAdist = derive2 { name="FMAdist"; version="0.1.0"; sha256="0aa4sw93ia6cp386hrq6x448x4w0p6k198rjaqs474j25gqgxrv0"; depends=[EnvStats extraDistr fitdistrplus MASS quadprog STAR]; }; FMC = derive2 { name="FMC"; version="1.0.0"; sha256="1pfqxx7slgcmw4al7i8hy59f4han6b0b7b5az7yh1mscdnghl9bj"; depends=[minimalRSD]; }; FMCCSD = derive2 { name="FMCCSD"; version="1.0"; sha256="0c50km5ba6biq9p3mycxhy00ij2gr6y5zf3q8ycq0g1mbk8ybfb7"; depends=[numDeriv orthopolynom Rcpp RcppArmadillo splines2]; }; @@ -1591,7 +1595,7 @@ in with self; { FREEtree = derive2 { name="FREEtree"; version="0.1.0"; sha256="1i2liqbcg993snj5vq341mmafzhn1yrwljvx4f3kyzy0pa59k6rn"; depends=[glmertree MASS pre WGCNA]; }; FREQ = derive2 { name="FREQ"; version="1.0"; sha256="01nra30pbnqdd63pa87lcws3hnhhzybcjvx2jqyxjghn6khz47j0"; depends=[]; }; FRESA_CAD = derive2 { name="FRESA.CAD"; version="3.3.1"; sha256="1d8ya1pqy1zc9hxp7s211n0wa3n63jgpxh5ngysbh0dn488l8vgg"; depends=[Hmisc miscTools pROC Rcpp RcppArmadillo stringr]; }; - FRK = derive2 { name="FRK"; version="2.0.1"; sha256="17zihlck981m1ghyflxjaxzdxgir5r8njl30hsv2lrc35qfw340z"; depends=[digest dplyr ggplot2 ggpubr Hmisc Matrix plyr Rcpp RcppEigen reshape2 scales sp spacetime sparseinv statmod TMB]; }; + FRK = derive2 { name="FRK"; version="2.0.2"; sha256="0i54qq0vadxjaxh7x7k1i325cczyxrs97cm41nwzqr2zcl2nji6w"; depends=[digest dplyr ggplot2 ggpubr Hmisc Matrix plyr Rcpp RcppEigen reshape2 scales sp spacetime sparseinv statmod TMB]; }; FSA = derive2 { name="FSA"; version="0.9.1"; sha256="19acr6cwy4qh78d0zyawwrpkl6kkv88bqzyz4a40b3ajyg69cqbn"; depends=[car dplyr dunn_test lmtest plotrix sciplot withr]; }; FSAdata = derive2 { name="FSAdata"; version="0.3.8"; sha256="0i7wkz0baxcf1dv6qvc891b4ja4x65p4qicil472k6a9gcf5d4qm"; depends=[]; }; FSDAM = derive2 { name="FSDAM"; version="2020.11-18"; sha256="09l7zvmbvmbcr5pxizdhs5fn79r6cl4ic0hsz2bazdymsqv3s3nm"; depends=[kyotil reticulate]; }; @@ -1616,6 +1620,7 @@ in with self; { FactorsR = derive2 { name="FactorsR"; version="1.4"; sha256="1nw63j9bi4x09pgdvdml0w0qxfy1dda5hkxbhd3d6f7rky1z0nyf"; depends=[]; }; Factoshiny = derive2 { name="Factoshiny"; version="2.4"; sha256="0szdpdghaqrfjdx3c9klgww8i09dh69500sls2lyjz6c8gi80vcx"; depends=[colourpicker DT FactoInvestigate FactoMineR ggplot2 ggrepel missMDA shiny shinydashboard shinyjqui]; }; Fahrmeir = derive2 { name="Fahrmeir"; version="2016.5.31"; sha256="16fbc1zb9x9p04bl7y5nd375pha6bd3hfqqchlk1bqxrj4879y5g"; depends=[]; }; + FairMclus = derive2 { name="FairMclus"; version="2.2.1"; sha256="0mhccn6yyf35qb856psh3dpiwdf24l3w2lqr643lkn38lhbmyvn8"; depends=[cluster data_table doParallel dplyr foreach irr magrittr rlist tidyr]; }; FamEvent = derive2 { name="FamEvent"; version="2.1"; sha256="1bwi91z8xyb3xj8fwbshgdq7l1pik2dsy6ljzwy1ymd0xz0q7f5a"; depends=[eha kinship2 MASS pracma survival truncnorm]; }; Familias = derive2 { name="Familias"; version="2.4"; sha256="1k6ig2zfkr1a4s3s85ygixmmsrb5m8vqqab8l5ffkspgjvh4dfz2"; depends=[kinship2 paramlink Rsolnp]; }; FamilyRank = derive2 { name="FamilyRank"; version="1.0"; sha256="0v1b3a6rxbbl7xdy977j02x1ni66879x98vg6ngbaqvh7v9vl82x"; depends=[plyr Rcpp RcppArmadillo]; }; @@ -1718,11 +1723,11 @@ in with self; { FuzzyAHP = derive2 { name="FuzzyAHP"; version="0.9.5"; sha256="02sx32vlvnr0fzw8rf0f6hiikqn7xp1ibpqzxhxwv8yij2qkiyci"; depends=[MASS]; }; FuzzyLP = derive2 { name="FuzzyLP"; version="0.1-6"; sha256="0k1cqyswhzp31dq91xigirkqhw3imkx68n4vasyvrgq6fm97dl1n"; depends=[FuzzyNumbers ROI ROI_plugin_glpk]; }; FuzzyMCDM = derive2 { name="FuzzyMCDM"; version="1.1"; sha256="0ss0s65mm6j0nax4mb9g668d9n9cgl0l016mc3h9hbjxfpqrbkks"; depends=[RankAggreg]; }; - FuzzyNumbers = derive2 { name="FuzzyNumbers"; version="0.4-6"; sha256="1zba28kmzpcza099k1ck7aqn7ms2fh3ijcn05xdimvssjbhsag81"; depends=[]; }; + FuzzyNumbers = derive2 { name="FuzzyNumbers"; version="0.4-7"; sha256="12xficdsln31rzfziycw6z0912cgrq6mkvz3f1nbli9lzqrypxzl"; depends=[]; }; FuzzyNumbers_Ext_2 = derive2 { name="FuzzyNumbers.Ext.2"; version="3.2"; sha256="0gldq0bg1p1vmrn35prha44d7lyymz0jzshdyp2c5rx433mny7h5"; depends=[FuzzyNumbers]; }; FuzzyQ = derive2 { name="FuzzyQ"; version="0.1.0"; sha256="1camdw7rnzf02nqjlmkr7mqpc38dafq9nw8x7pzwi1lh5xwv5dia"; depends=[cluster]; }; FuzzyR = derive2 { name="FuzzyR"; version="2.3.2"; sha256="0d0zf8diw7m10zfx0r5zg5arhf4a90sva77h6rvfywixldwrnk7s"; depends=[plyr shiny]; }; - FuzzyResampling = derive2 { name="FuzzyResampling"; version="0.1.0"; sha256="0iziav76lflayi9ly9mgnr3fxx6r85f501w46vrhdvrbndpn43xl"; depends=[ttutils]; }; + FuzzyResampling = derive2 { name="FuzzyResampling"; version="0.3.0"; sha256="05fjixl05152linfk1y75yrzb1brr9jggja9n7bx3md1ziwqlczy"; depends=[ttutils]; }; FuzzySTs = derive2 { name="FuzzySTs"; version="0.2"; sha256="0zs1pyn9apysspxa0glqc96h6npmvvhiqvqpcm0brslz0b6xnilp"; depends=[FuzzyNumbers polynom]; }; FuzzyStatProb = derive2 { name="FuzzyStatProb"; version="2.0.4"; sha256="1jpqb8xczi1d4g306vrwpi02f9h59aki1pgnckvfmiclr306prpb"; depends=[DEoptim FuzzyNumbers MultinomialCI]; }; FuzzyStatTra = derive2 { name="FuzzyStatTra"; version="1.0"; sha256="1ijrlnlmq9d5ahgrpzba6kzkaq1zq59zqdgcizybsf9alsswcm00"; depends=[]; }; @@ -1759,7 +1764,7 @@ in with self; { GD = derive2 { name="GD"; version="1.10"; sha256="1sy77yxnwh2n48zahh498v30nl3hivrsmyp0jf3gyyzhxm8z1n5l"; depends=[badger]; }; GDAdata = derive2 { name="GDAdata"; version="0.93"; sha256="13ks97i289rc4i7gpqrifwbj0m9rx8csjhnfg8mad10qmjwz7p8b"; depends=[]; }; GDAtools = derive2 { name="GDAtools"; version="1.7"; sha256="1fsx2kxilvfvm9nccn1a9ly6kavz9l8np6az2ax9dd00rbvqjcjl"; depends=[FactoMineR GGally ggplot2 ggrepel MASS nleqslv nnet RColorBrewer rlang wdm]; }; - GDELTtools = derive2 { name="GDELTtools"; version="1.2"; sha256="1rx6kjh7kmyycqapvbizcxkcfp09qvqv7k8f25v333sxkacpz6p5"; depends=[plyr TimeWarp]; }; + GDELTtools = derive2 { name="GDELTtools"; version="1.5"; sha256="1lhsyf7kd1lnx2dgifmrd89yl95sf9k6ay19dll2p8b9h3vs7hci"; depends=[dplyr plyr TimeWarp]; }; GDINA = derive2 { name="GDINA"; version="2.8.7"; sha256="08cdjp4mqn81j3wa770v7n8zkslys9jqqb3d3c09dkfmgdk6hga4"; depends=[alabama ggplot2 MASS nloptr numDeriv Rcpp RcppArmadillo Rsolnp shiny shinydashboard]; }; GDPuc = derive2 { name="GDPuc"; version="0.5.1"; sha256="1pdhl8mccxb613994f3y59a89rvksi8kb7j2aaf7msnh67rndrrn"; depends=[cli crayon dplyr glue lifecycle magrittr rlang stringr tibble tidyselect]; }; GE = derive2 { name="GE"; version="0.2.2"; sha256="1lmldzsmnh13mp4vs3pzjfyzzam4ac4w9d749j61w5w4maawy6hc"; depends=[CGE data_tree DiagrammeR]; }; @@ -1846,6 +1851,7 @@ in with self; { GPP = derive2 { name="GPP"; version="0.1"; sha256="1qryza8mamwzwqiy31drf176w192ksw34kpsa0wc8gsp3ylkm2f9"; depends=[rstan]; }; GPRMortality = derive2 { name="GPRMortality"; version="0.1.0"; sha256="0k5pfyl7r5vsac927aqx19lz93vyk5l3ydqkazn2hwwaw1lh2wav"; depends=[rstan]; }; GPSCDF = derive2 { name="GPSCDF"; version="0.1.1"; sha256="1l50a6p81lykiqlqiwb6kix5s6wzwdi8vddqhl418dlwlsh83ybf"; depends=[dplyr MASS nbpMatching nnet survival]; }; + GPSeqClus = derive2 { name="GPSeqClus"; version="1.2.0"; sha256="1vqbbw6kcqpq6c29yanx3j1ns9x2xr7vvv5fzljw1yswqbfrny7c"; depends=[geosphere htmlwidgets leaflet leaflet_extras plotKML plyr purrr rgdal sp spacetime suncalc]; }; GPareto = derive2 { name="GPareto"; version="1.1.6"; sha256="0iss4827b96dcvhlyl6ajgvns5n5m854myx1qsb53vhq48ck93z2"; depends=[DiceDesign DiceKriging emoa KrigInv ks MASS pbivnorm pso randtoolbox Rcpp rgenoud rgl]; }; GPfit = derive2 { name="GPfit"; version="1.0-8"; sha256="05mpiyi2vxv0wqp422n1mnxa8msc4daq40cwpnpngbcwqhlgqkby"; depends=[lattice lhs]; }; GPoM = derive2 { name="GPoM"; version="1.3"; sha256="1c870dfbpswx78n4s1v6zy0l1qknrs9335af0z01v1miyrmi95gd"; depends=[deSolve float rgl]; }; @@ -1896,7 +1902,7 @@ in with self; { GWSDAT = derive2 { name="GWSDAT"; version="3.1.0"; sha256="1ka461xilsdqc4frh46bicxfnm543k95chnlxghq6j9rjgkx4k0q"; depends=[deldir digest geometry Kendall lattice lubridate MASS Matrix officer raster readxl rhandsontable sf shiny shinycssloaders shinydashboard shinyjs sm sp splancs zoo]; }; GWmodel = derive2 { name="GWmodel"; version="2.2-8"; sha256="18jd18mysf7li6c7ywd5cjkwzcvpprc93z8ycndyh0jmyzdr062v"; depends=[FNN maptools Rcpp RcppArmadillo robustbase sp spacetime spatialreg spdep]; }; GWnnegPCA = derive2 { name="GWnnegPCA"; version="0.0.4"; sha256="1yinzlp22z9z5fk9f1nm14i408yfm5kfgkn3pqnh4bkghs569ivg"; depends=[geodist nsprcomp pracma sf sp spData]; }; - GWpcor = derive2 { name="GWpcor"; version="0.1.6"; sha256="1plh7m1gj2gh3lkprj1gfqag1dggkhnvz73pr0gp6w3qqhdk0qdh"; depends=[corpcor doParallel dplyr foreach geodist pracma sf sp]; }; + GWpcor = derive2 { name="GWpcor"; version="0.1.7"; sha256="0q43673pmm2c6kss688fpz10b39y3jn1kblv13p8ky0bk82hmcvi"; depends=[corpcor doParallel dplyr foreach geodist pracma sf sp]; }; GWsignif = derive2 { name="GWsignif"; version="1.2"; sha256="0bss5s3ijnlckz44p7jj49bn2r8nwqckpzwzcv0vci915q8jfsj2"; depends=[]; }; GaDiFPT = derive2 { name="GaDiFPT"; version="1.0"; sha256="15fnj1w30h0zdj032f3js0bbb1qlyk4b54a4aclykwzicqdgalkg"; depends=[]; }; GaSP = derive2 { name="GaSP"; version="1.0.0"; sha256="0jm9fqlfxkl5pfr1ijbj8qci5xb974wk660xvh488xfwdwj02fnc"; depends=[]; }; @@ -1924,11 +1930,12 @@ in with self; { GeneClusterNet = derive2 { name="GeneClusterNet"; version="1.0.1"; sha256="1xi4c041c4m39f9wb5fklgmhi6ng78iwzzqch5xk9hx5blq6zd4m"; depends=[G1DBN igraph MASS]; }; GeneCycle = derive2 { name="GeneCycle"; version="1.1.5"; sha256="08pr8xgcznm04c4lhvzv2qnzij5vj7pjzyj9pr1pqpmc977h8dvg"; depends=[fdrtool longitudinal MASS]; }; GeneF = derive2 { name="GeneF"; version="1.0"; sha256="0bizf47944b2zv9ayxb9rhrqx0ilz2xlvkw7x5vbg7l67y2g2l4d"; depends=[]; }; - GeneNet = derive2 { name="GeneNet"; version="1.2.15"; sha256="11ba6ahsk3x9alvcw8bai2bpg84ki1m8nadrjjdhjg65svhw8njm"; depends=[corpcor fdrtool longitudinal]; }; + GeneNet = derive2 { name="GeneNet"; version="1.2.16"; sha256="1r1khga3nxxjghs4vnbymzp0cwb1q17zw2v3a94qz8fsrirq1sf1"; depends=[corpcor fdrtool longitudinal]; }; GeneralOaxaca = derive2 { name="GeneralOaxaca"; version="1.0"; sha256="19j5c5xr6mdb6pmih94wbjas4yh0dmsqfggg8clvdxkpwk0h338v"; depends=[boot]; }; GeneralisedCovarianceMeasure = derive2 { name="GeneralisedCovarianceMeasure"; version="0.1.0"; sha256="02s1wbsdp5ma4pnmcsdl5dwm156zx12d3n1ypzkc33lxg21ashzj"; depends=[CVST kernlab mgcv xgboost]; }; GeneralizedHyperbolic = derive2 { name="GeneralizedHyperbolic"; version="0.8-4"; sha256="01gqfvmzfslhxdnigzbl3rd55hk6r0kgd8fm9xjl0kb9vmb735lm"; depends=[DistributionUtils MASS]; }; GeneralizedUmatrix = derive2 { name="GeneralizedUmatrix"; version="1.2.2"; sha256="055q0rspjw5yin0kia6gcax89cfdmgvgvj1zjh4iswfs48n9xdcj"; depends=[ggplot2 Rcpp RcppArmadillo]; }; + GenericML = derive2 { name="GenericML"; version="0.1.0"; sha256="1wz81x9mxninmxiz5d1k9lmh6jcz4rqvwsh1kjh1wn9zm2yxkbs9"; depends=[ggplot2 lmtest mlr3 mlr3learners sandwich splitstackshape]; }; GeneticSubsetter = derive2 { name="GeneticSubsetter"; version="0.8"; sha256="0bd4snv3dwabc7mknmd2rjmffj67xq535x0bycajhd83d1jhjars"; depends=[]; }; GenoScan = derive2 { name="GenoScan"; version="0.1"; sha256="0p98imfvvz7l94kim3pxypyjs2pbxng4a2nagbafbady82ylr2vi"; depends=[data_table MASS Matrix seqminer SKAT]; }; GenomeAdapt = derive2 { name="GenomeAdapt"; version="1.0.0"; sha256="0jsxqhx62vbsr0hcqk9wrfsg3l3wbnx64pzxx18ps366vg7fxmii"; depends=[gdsfmt qvalue robust SNPRelate]; }; @@ -1939,7 +1946,6 @@ in with self; { GeoBoxplot = derive2 { name="GeoBoxplot"; version="1.0"; sha256="164dh49ac3fx38fdglv32lmz92ca8jdd98cbhz6mxsk8r0jcladw"; depends=[]; }; GeoDE = derive2 { name="GeoDE"; version="1.0"; sha256="0wawkzj0344pprm8g884d7by8v74iw96b109rgm7anal48fl30im"; depends=[MASS Matrix]; }; GeoFIS = derive2 { name="GeoFIS"; version="1.0.1"; sha256="09kn2sydz9fn97kbw66y7rqda78bpqyfd0pjmapxljm56hwivvlf"; depends=[BH data_tree FisPro foreach nnls R6 Rcpp Rdpack rgeos sp]; }; - GeoLight = derive2 { name="GeoLight"; version="2.0.0"; sha256="1i49hyj3f5rcw0s6j2csnfwc6mnp5zn44vxjnk05wdkpw6dpvx5i"; depends=[changepoint fields maps MASS]; }; GeoMongo = derive2 { name="GeoMongo"; version="1.0.3"; sha256="0m5nz5q81jz2v2bl2dbgdbdprrkckxr2c67qn0cg9vms0pi3fawr"; depends=[data_table geojsonR R6 reticulate]; }; GeoRange = derive2 { name="GeoRange"; version="0.1.0"; sha256="0krj9570wkhdvpaqkq3nf0maglqd44mpwn4v1bymvgpk1i1wf5p3"; depends=[moments proj4 raster sp velociraptr]; }; GeoTcgaData = derive2 { name="GeoTcgaData"; version="1.0.2"; sha256="1s3l445igzf1xirfxjkp34djcfipbpcgyd5fd3icnsy2dkfkc787"; depends=[cqn data_table magrittr plyr]; }; @@ -1958,6 +1964,7 @@ in with self; { GetoptLong = derive2 { name="GetoptLong"; version="1.0.5"; sha256="00fpm6nd3kqa2ikasxa62jzywi46fvvmx1mdavcp5yrxxn37j8wc"; depends=[crayon GlobalOptions rjson]; }; Ghat = derive2 { name="Ghat"; version="0.1.0"; sha256="1w5agphnbngc0ldb3gbgh4b8ww956lf31bfyxw2zp56crx4akcxf"; depends=[rrBLUP]; }; Ghost = derive2 { name="Ghost"; version="0.1.0"; sha256="0anrb1n3f3jnq2p0dgqzw5a0gby2slafv2bybgy5gm3f9fsj831w"; depends=[R6]; }; + GhostKnockoff = derive2 { name="GhostKnockoff"; version="0.1.0"; sha256="0vp9f8k31yclxvmcjgzkg6xl3rdv49anjmwdhcrhcxv8x9f3bdrj"; depends=[corpcor CVXR gtools Matrix Rdsdp RSpectra seqminer]; }; GiNA = derive2 { name="GiNA"; version="1.0.1"; sha256="0his7wsgnggyv9526blxzxa1ni8hwq2ws64wkmha45nvvnm3dsiw"; depends=[doParallel EBImage foreach png]; }; GiRaF = derive2 { name="GiRaF"; version="1.0.1"; sha256="1m19jxr6h485v32iqq260cizf30cgrx3pk802r73fbp3ssj7nmvh"; depends=[BH Rcpp RcppArmadillo]; }; GibbsACOV = derive2 { name="GibbsACOV"; version="1.1"; sha256="1ikcdsf72sn1zgk527zmxw3zjhx0yvkal6dv001cgkv202842kll"; depends=[MASS]; }; @@ -1991,7 +1998,7 @@ in with self; { GreedyEPL = derive2 { name="GreedyEPL"; version="1.2"; sha256="19bgrgzb7jdqpljcbhr3d98y331k1b8fbwgcipak6zkhk2vr6vqz"; depends=[Rcpp RcppArmadillo]; }; GreedyExperimentalDesign = derive2 { name="GreedyExperimentalDesign"; version="1.4"; sha256="0j2grrnd4yn4d1ly62dzqq0y7l7mh3lpnlfpf5n41a9w489m03hw"; depends=[checkmate GreedyExperimentalDesignJARs kernlab nbpMatching Rcpp rJava survey]; }; GreedyExperimentalDesignJARs = derive2 { name="GreedyExperimentalDesignJARs"; version="1.0"; sha256="14i6m5qlh1fca9xmzid01hicd3bkf6rzl139ss78gvw544zrapw7"; depends=[rJava]; }; - Greg = derive2 { name="Greg"; version="1.3.4"; sha256="1s46arnraj9xc98kxj0av64jjg0khxjrvgj1gjqz5f6bw2bxmkm3"; depends=[Epi forestplot Gmisc Hmisc htmlTable knitr magrittr nlme rms sandwich stringr]; }; + Greg = derive2 { name="Greg"; version="1.4.0"; sha256="0n5w4z4czrgp8mdbpxiw3ha41dax4nns8na5xzq2qc94nig8k97m"; depends=[Epi forestplot Gmisc Hmisc htmlTable knitr magrittr nlme rms sandwich stringr]; }; GreyModel = derive2 { name="GreyModel"; version="0.1.0"; sha256="0vxl4kgihcyl96qiz6sz5icznaa1jpsqqbn1irwmzyngwsh1qvzw"; depends=[]; }; GridOnClusters = derive2 { name="GridOnClusters"; version="0.0.8"; sha256="16wr7zssiy6y0hvg2s7vhy30qxq5ja8yplv8xncn6iz8giy1wdww"; depends=[cluster dqrng fossil plotrix Rcpp Rdpack]; }; GrimR = derive2 { name="GrimR"; version="0.5"; sha256="005ywc31yn1cs54kjlkrryw0s7zm8dqqfjkdlkm4s1sbc9r3mssz"; depends=[car]; }; @@ -2071,7 +2078,7 @@ in with self; { HPbayes = derive2 { name="HPbayes"; version="0.1"; sha256="1kpqnv7ymf95sgb0ik7npc4qfkzc1zb483vwnjpba4f42jhf508y"; depends=[boot corpcor MASS mvtnorm numDeriv]; }; HRM = derive2 { name="HRM"; version="1.2.1"; sha256="0qsxwi0v61k1waw21nrz86jazd5wgq2drhan3w8pmb35q2z20s35"; depends=[data_table doBy ggplot2 MASS matrixcalc mvtnorm plyr pseudorank Rcpp reshape2 xtable]; }; HRM_curve = derive2 { name="HRM.curve"; version="0.0.1"; sha256="0p3kvldpz347c0cdjkrdm0x2nfj85hm5cp59lirqhq77hf1zfnd5"; depends=[]; }; - HRW = derive2 { name="HRW"; version="1.0-4"; sha256="0bjx8rg132m782cqy744ylbigvbj48ywcgws1jwmh0ry60hyqxav"; depends=[KernSmooth]; }; + HRW = derive2 { name="HRW"; version="1.0-5"; sha256="08fh9504cck1ffrwim27nkrm9y1in6jl1s7zs8h8x3ik54p9jb0k"; depends=[KernSmooth]; }; HS = derive2 { name="HS"; version="1.1"; sha256="1vhbchc446j49jj7jgmy4l59n8ahk5l8jp1rl5xwsmn9iqir62mp"; depends=[data_table ggplot2 ggpubr partitions reshape2 tidyr zoo]; }; HSAR = derive2 { name="HSAR"; version="0.5.1"; sha256="03ryscvgiiwjcqk6gy3251nqqk43x508kz3ibw35hi84m2s7fsxj"; depends=[Rcpp RcppArmadillo spatialreg spdep]; }; HSAUR = derive2 { name="HSAUR"; version="1.3-9"; sha256="0b2hyn59lr2pma87fcj7mli3qmrbnfhgd8fv02fa317rj52399qz"; depends=[]; }; @@ -2096,7 +2103,7 @@ in with self; { Hapi = derive2 { name="Hapi"; version="0.0.3"; sha256="0jqjhfq38k161kqff5cx0vxpsmjm2y5ca7049mvqiwqwvi4fp08m"; depends=[ggplot2 HMM]; }; Haplin = derive2 { name="Haplin"; version="7.2.3"; sha256="1s1jlyr0gwvigfndqjbxb8zib6hkmn341khsnv87f82vzakmhi80"; depends=[ff MASS mgcv rlang]; }; HaploSim = derive2 { name="HaploSim"; version="1.8.4"; sha256="0794f76hc9qvjmay7c61cmzycqafljs0g0hliq9xfrw4f23gq3sa"; depends=[]; }; - HardyWeinberg = derive2 { name="HardyWeinberg"; version="1.7.2"; sha256="0g10jh71yp0pcag44z409xqb6d941l7y887a632962bk5rgn6q5p"; depends=[mice Rcpp Rsolnp]; }; + HardyWeinberg = derive2 { name="HardyWeinberg"; version="1.7.4"; sha256="11y3zg8aqxk5xdzsv7i3bgqkky6a0wgf2n8saa3a4adq75k328ib"; depends=[mice nnet Rcpp Rsolnp]; }; HarmonicRegression = derive2 { name="HarmonicRegression"; version="1.0"; sha256="0inz3l610wl0ibqjyrhfbmwmcfzcmcfhixai4lpkbfsyx93z2i4d"; depends=[]; }; Harvest_Tree = derive2 { name="Harvest.Tree"; version="1.1"; sha256="021zmppy7p2iakaxirfjdb5jzakg1ijma9d25ly2ni0nx0p1mh6z"; depends=[rpart]; }; HeckmanEM = derive2 { name="HeckmanEM"; version="0.1.2"; sha256="1q9sad19ccq30ggvcj1byhka4dwa94k6z31ig56vi3031nx2424n"; depends=[MomTrunc mvtnorm PerformanceAnalytics sampleSelection]; }; @@ -2159,7 +2166,7 @@ in with self; { ICAMS = derive2 { name="ICAMS"; version="2.3.10"; sha256="0kkxn45addgl7mg8w4ybna7xaj11dgrwax06l0ml3bnk8h0nrgi5"; depends=[Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicRanges IRanges RColorBrewer stringi zip]; }; ICAOD = derive2 { name="ICAOD"; version="1.0.1"; sha256="07fxh60vsndlvjijjsh1a9l2qkp78sb9nkg5x5mslh209lpjjhw1"; depends=[cubature mnormt mvQuad nloptr Rcpp RcppEigen sn]; }; ICBayes = derive2 { name="ICBayes"; version="1.2"; sha256="1hdh7g4nk6yy0xz9564vpvh1blrw30lvyw2wc5mmgn78kwjqla34"; depends=[coda HI survival]; }; - ICBioMark = derive2 { name="ICBioMark"; version="0.1.2"; sha256="01bmh2kx1w3h7aqvm6nkmbdv576r3la3f2973jzak4j662yyk9sj"; depends=[dplyr gglasso ggplot2 glmnet latex2exp Matrix matrixStats PRROC purrr]; }; + ICBioMark = derive2 { name="ICBioMark"; version="0.1.4"; sha256="1bvlbczlkjdql98ds5wgmg3j2dxbfm5i4yzq98pdkzaiccg8sx2v"; depends=[dplyr gglasso ggplot2 glmnet latex2exp Matrix matrixStats PRROC purrr]; }; ICC = derive2 { name="ICC"; version="2.3.0"; sha256="0y8zh9715cp9bglxpygqwgigrarq37sj845lk1xl0ydwinl0a6kk"; depends=[]; }; ICC_Sample_Size = derive2 { name="ICC.Sample.Size"; version="1.0"; sha256="1w6v1jp8bfvf6c49ikswkc5527gdx5cyqnw95x00pgmm6riwlsp9"; depends=[]; }; ICCbin = derive2 { name="ICCbin"; version="1.1.1"; sha256="1pzlaj7w98pgrlg3zvpmdv0dpgi5gih0j73qv86ak75fkxvrnzzw"; depends=[]; }; @@ -2173,7 +2180,7 @@ in with self; { ICODS = derive2 { name="ICODS"; version="1.0"; sha256="13wi4mqdwdrjfjh42sjifc6vlkj6jlm4z0x6680xdzkwq8byipi9"; depends=[MASS]; }; ICRanks = derive2 { name="ICRanks"; version="3.1"; sha256="1vwzqkjg7i5hm96s8frp72n6xqadlsawzr1wby1fhsxl2m5f1797"; depends=[gmp multcomp Rcpp]; }; ICS = derive2 { name="ICS"; version="1.3-1"; sha256="0x3cwhvzcibgyb8gqy6dc6lgnvbf6x8425zai57g8yn5i6zzc1li"; depends=[mvtnorm survey]; }; - ICSKAT = derive2 { name="ICSKAT"; version="0.1.0"; sha256="148sw8yg1ww39sdn5r77gx70nz40igz2rw9fwfj2nyq92j1l020k"; depends=[CompQuadForm dplyr magrittr Rcpp RcppEigen rje survival tidyr zoo]; }; + ICSKAT = derive2 { name="ICSKAT"; version="0.2.0"; sha256="13cx2480kyzcwxp9b57p3rq4fs6x1fd4wpwm7iwiqjh17v4vb54l"; depends=[CompQuadForm dplyr magrittr Rcpp RcppEigen rje survival zoo]; }; ICSNP = derive2 { name="ICSNP"; version="1.1-1"; sha256="1zf0k1kwdmjjqsbiiy3r2l47vjsrg09fj65p6zfld3j4gjbp17fd"; depends=[ICS mvtnorm]; }; ICSOutlier = derive2 { name="ICSOutlier"; version="0.3-0"; sha256="1vj1y4zw8pkghkg4qnmx0yk1yw4zzl9075n5czrna9ckk2p29fmh"; depends=[ICS moments mvtnorm]; }; ICSS = derive2 { name="ICSS"; version="1.1"; sha256="0kmsw8347ka5n0qncx7hqgs153ihkmxbl0wc5kqlb2l42sl6rp8x"; depends=[rstack]; }; @@ -2224,7 +2231,6 @@ in with self; { INTRIGUE = derive2 { name="INTRIGUE"; version="0.1.0"; sha256="1l1vfl0m4iqniwp4bp1bfjpqhwahg341fpyxhryr0j8lypqaw7si"; depends=[dplyr rlist SQUAREM]; }; IOHanalyzer = derive2 { name="IOHanalyzer"; version="0.1.6.1"; sha256="0iipdksj9bxcf3k2acm6ay1sjk9hcp860kqf7dflvcmf3i271rfc"; depends=[bsplus colorRamps colorspace colourpicker data_table dplyr DT ggplot2 httr kableExtra knitr magrittr markdown plotly RColorBrewer Rcpp reshape2 shiny shinydashboard shinyjs stringi]; }; IOHexperimenter = derive2 { name="IOHexperimenter"; version="0.1.4"; sha256="0aacliznncl488rjsnx02pfj1mchhcyb36v816g959ll38pvc6bk"; depends=[assertthat BH magrittr Rcpp]; }; - IP = derive2 { name="IP"; version="0.1"; sha256="0ranpsacsl2nm8swc3saw6xh6cdsfdyq58jlpki04kk3hsqbr9p0"; depends=[stringi]; }; IPCAPS = derive2 { name="IPCAPS"; version="1.1.8"; sha256="17ifkgjjnvvcc8dp065ng4ad9lr85lcdcb401vi84yy8m2llbypw"; depends=[apcluster expm fpc KRIS LPCM MASS Matrix Rmixmod]; }; IPCWK = derive2 { name="IPCWK"; version="1.0"; sha256="0hah1xl6zli0346jh57rjc5x8vynhaysj0l481rmvznsghv6im23"; depends=[MASS survival]; }; IPDFileCheck = derive2 { name="IPDFileCheck"; version="0.7.2"; sha256="1xz020w2cx83wcadnjsqlpfyir2apj7bsjpka77pwyg2h2fqc76m"; depends=[dplyr eeptools effsize gtsummary hash kableExtra lubridate stringr testthat tidyverse]; }; @@ -2238,7 +2244,6 @@ in with self; { IPWboxplot = derive2 { name="IPWboxplot"; version="0.1.0"; sha256="0lyqcjnbissick5hzwrx21pykq4pww9j0i03j0gy43awl1cq5qq8"; depends=[isotone]; }; IPWpn = derive2 { name="IPWpn"; version="0.1.0"; sha256="0glw8sb8jadnvznfj31l6lal0vqnmsmk96byinw7wy8avkz455fn"; depends=[dplyr MplusAutomation mvtnorm tibble tidyr tidyverse]; }; IQCC = derive2 { name="IQCC"; version="0.7"; sha256="1zalpmyywkrnci0jd8irakjhiqmr52zhj1sbxf9pz5c7wks2rdbc"; depends=[MASS miscTools qcc]; }; - IRATER = derive2 { name="IRATER"; version="0.0.1"; sha256="0jxdvjmnmangbqy3ibb5qrj9jz3wrzs0wa1r2gjk4v8vsbk0ipcf"; depends=[coda lattice plyr R2admb]; }; IRCcheck = derive2 { name="IRCcheck"; version="1.0.0"; sha256="035sx36qf5hdnc51h8251qwxfm30r8h2v2qs2x161ip4cqghw019"; depends=[corpcor GGMncv glmnet MASS Rdpack]; }; IRISMustangMetrics = derive2 { name="IRISMustangMetrics"; version="2.4.4"; sha256="0pnqmzzzbyqdg5hy4jjmlw38cpi81gsphfs4bqwbhmx77dp7ib06"; depends=[dplyr IRISSeismic pracma RCurl seismicRoll signal stringr XML]; }; IRISSeismic = derive2 { name="IRISSeismic"; version="1.6.3"; sha256="0krq0xxxwl59cp8mn82f9xlincvl6l8r6cq5axfmk99nrzcfdy5g"; depends=[pracma RCurl seismicRoll signal stringr XML]; }; @@ -2296,7 +2301,7 @@ in with self; { Infusion = derive2 { name="Infusion"; version="1.5.1"; sha256="02rlzil1qzgyxrf87mdvxdm0mgjnljk211j9c7hh72h0mq5rlg0d"; depends=[blackbox foreach mvtnorm numDeriv pbapply proxy spaMM viridis]; }; InjurySeverityScore = derive2 { name="InjurySeverityScore"; version="0.0.0.2"; sha256="0g52cksa774in18ykrym61l3my9zm343bgsq5mg7mki9x65xd35z"; depends=[dplyr rlang tidyr]; }; InspectChangepoint = derive2 { name="InspectChangepoint"; version="1.1"; sha256="0zrfyzz3l9jff7044dhrjv8rp8f258fz993ycyxyd29nd7x9n9nj"; depends=[MASS]; }; - IntCal = derive2 { name="IntCal"; version="0.2.3"; sha256="0x2dlkgsw1nwqqy9582znqds6pxvv8pwk2ky4q0qwcrx1v8akn3d"; depends=[]; }; + IntCal = derive2 { name="IntCal"; version="0.3.0"; sha256="1sf25dkrnww0nqqhciadhak08n27l39ipczkjsbi7z3sn2npj50b"; depends=[]; }; IntLik = derive2 { name="IntLik"; version="1.0"; sha256="13ww5bsbf1vnpaip0w53rw99a8hxzziibj7j66cm31jmi8l6fznf"; depends=[maxLik]; }; IntNMF = derive2 { name="IntNMF"; version="1.2.0"; sha256="09qzyvv7d4wr68qrlhcd4ivr65is3mypv1vaxpswwcjmcmyr4gzp"; depends=[cluster InterSIM MASS mclust NMF]; }; IntegrateBs = derive2 { name="IntegrateBs"; version="0.1.0"; sha256="1pkx4wpahd1sabzx55law3710x3vbh9yi6kii8gs2xfq3cb1llmq"; depends=[]; }; @@ -2364,14 +2369,14 @@ in with self; { JoF = derive2 { name="JoF"; version="0.1.0"; sha256="1my6fc4awrc822ibsvx3hiz4l49vp8dx0j05v56r7d27xizy8j0j"; depends=[]; }; JoSAE = derive2 { name="JoSAE"; version="0.3.0"; sha256="1vjxzbfs8a7kpmn2lb9dca67d4njmzjr3pl16s0r9ihmmxxwwili"; depends=[nlme]; }; Johnson = derive2 { name="Johnson"; version="1.4"; sha256="12ajcfz5mwxvimv8nq683a2x3590gz0gnyviviyzf5x066a4q0lj"; depends=[]; }; - JointAI = derive2 { name="JointAI"; version="1.0.2"; sha256="0rfnfswb35yym174mc0r59c0pxx0l4szvzcg8n99nr0rdl0vhr8z"; depends=[coda foreach future MASS mathjaxr mcmcse rjags rlang survival]; }; + JointAI = derive2 { name="JointAI"; version="1.0.3"; sha256="1dg685lpqxs1a2mf584a0l0a6zz6bkp06n3ydvgnvngrclhv18zj"; depends=[coda foreach future MASS mathjaxr mcmcse rjags rlang survival]; }; JointModel = derive2 { name="JointModel"; version="1.0"; sha256="1zgs5c7saqyqxvxmhw5sxy5w67abq344aid6igw1da05bfy2az6h"; depends=[lme4 statmod survival]; }; JointNets = derive2 { name="JointNets"; version="2.0.1"; sha256="18n9dsy0w0nh7dznp6gw6g5fhhjhf5y589nb49hri0721kq1h3rb"; depends=[brainR igraph JGL lpSolve MASS misc3d oro_nifti pcaPP rgl shiny]; }; Julia = derive2 { name="Julia"; version="1.1"; sha256="0i1n150d89pkds7qyr0xycz6h07zikb2y07d5fcpaqs4446a8prg"; depends=[]; }; JuliaCall = derive2 { name="JuliaCall"; version="0.17.4"; sha256="0ys2sm8yf41zqkvwz9cavkqk8br338w93wq0h8lggfq4q0l85n21"; depends=[knitr Rcpp]; }; JuliaConnectoR = derive2 { name="JuliaConnectoR"; version="1.1.0"; sha256="0dqgrhnfcwx7gprvxm8kqcmmrgs5zpi23b8aiy46s9i9b59y8kmw"; depends=[]; }; JumpTest = derive2 { name="JumpTest"; version="1.1"; sha256="0y375m5477nq0ybnjmfnd8hi45d8jmdnprqvw5f70llpd7bcghh0"; depends=[MASS Rcpp RcppEigen]; }; - JumpeR = derive2 { name="JumpeR"; version="0.1.4"; sha256="1c1i1m46ccjph4hnlr66pdch7ld4k5fv95fcgk8amlig8hcqiq7c"; depends=[dplyr magrittr pdftools purrr rvest stringr SwimmeR xml2]; }; + JumpeR = derive2 { name="JumpeR"; version="0.3.0"; sha256="1bh2448462xgiv4k19qgm3dc4wa00ad8v3l6v22pg0l5kpmlx5i2"; depends=[dplyr magrittr pdftools purrr rvest stringr SwimmeR xml2]; }; JustifyAlpha = derive2 { name="JustifyAlpha"; version="0.1.1"; sha256="0bd7sn4sn95kal5q2x1q78fsk1mhakr5fax3z6ny2yda2h266af9"; depends=[BayesFactor ggplot2 pwr qpdf shiny shinydashboard stringr Superpower]; }; KANT = derive2 { name="KANT"; version="2.0"; sha256="169j72pmdkcj6hv8qgmc02aps0ppvvl1vnr1hzrb1gsf7zj7bs3y"; depends=[affy Biobase]; }; KCSKNNShiny = derive2 { name="KCSKNNShiny"; version="0.1.0"; sha256="13gzqf3g7vj8cc0xm5902q7lad2way8d0ri1fs01dnv97wmwbxvn"; depends=[caret dplyr FNN rhandsontable shiny]; }; @@ -2416,7 +2421,7 @@ in with self; { KingCountyHouses = derive2 { name="KingCountyHouses"; version="0.1.0"; sha256="17l415v290lm99rsifpk6324mm1sk79ns4cvjkyh9ibj8n7l44c1"; depends=[]; }; KnapsackSampling = derive2 { name="KnapsackSampling"; version="0.1.0"; sha256="17yzmd11k1n5iy54vbcvpzvkm8ypbl6n1kfi931wwrrcq9y7hg22"; depends=[lpSolve]; }; KneeArrower = derive2 { name="KneeArrower"; version="1.0.0"; sha256="1blmim4l7375psa9c3wbpksywj5nfbawly4001n6311wcv4dybl5"; depends=[signal]; }; - KnockoffScreen = derive2 { name="KnockoffScreen"; version="0.2.0"; sha256="1gc47ahvw9sdjbaxg3xl8r6pw9mkn85wdy6gwlksscnl49krrikg"; depends=[CompQuadForm data_table Matrix seqminer SPAtest]; }; + KnockoffScreen = derive2 { name="KnockoffScreen"; version="0.3.0"; sha256="01r04d9ha9l5pkz3lwdcb5x5qqwk8vil9avnbnfn76wg63mdfhbk"; depends=[bigmemory CompQuadForm data_table irlba Matrix seqminer SPAtest]; }; Knoema = derive2 { name="Knoema"; version="0.1.19"; sha256="16izh1viaqxvhgfxy2g6b9hhvm1n6nbjsj2xd45qwdibl3ly8d0f"; depends=[base64enc digest httr jsonlite lubridate xts zoo]; }; KnowBR = derive2 { name="KnowBR"; version="2.0"; sha256="0i934gff8ldg0lm5cfcf3ip7abnparaaviq8avs7cbnacs6nw8i1"; depends=[fossil mgcv plotrix sp vegan]; }; KnowGRRF = derive2 { name="KnowGRRF"; version="1.0"; sha256="0nk0baibd184rsg23jx1wg4c2fcaqf8ww7822xrs3w5ym6vwd0rs"; depends=[MASS PRROC randomForest RRF]; }; @@ -2429,7 +2434,7 @@ in with self; { L1mstate = derive2 { name="L1mstate"; version="1.0.1"; sha256="1nkx2h1fl32h0sx03f23x3sfxj5mnarbnpy0wmjji90chff7m2vz"; depends=[colorspace MASS Matrix mstate Rcpp RcppEigen]; }; L1pack = derive2 { name="L1pack"; version="0.38.196"; sha256="1cayk11wp6f2vpyz14j7my8wpd8hny2mxpjsdsw4wlz0mmwml70l"; depends=[fastmatrix]; }; L2DensityGoFtest = derive2 { name="L2DensityGoFtest"; version="0.2.0"; sha256="0658rxk25wg0r6rp6xzh6xhw9g39cnp05z9fay5k60mapifiz9vb"; depends=[fGarch kedd nor1mix]; }; - LA = derive2 { name="LA"; version="0.1.2"; sha256="14fl7hj7az6p4h36gmxq068srj8aw46mdld8idy7yzplgxrzn4kw"; depends=[LHD]; }; + LA = derive2 { name="LA"; version="0.1.3"; sha256="0yvgrm64g910h4zgavinj6ri5gvy5yjd3ydr9gqm7qdj05dsgz66"; depends=[LHD]; }; LAGOSNE = derive2 { name="LAGOSNE"; version="2.0.2"; sha256="0fhy590mnkypknxk34c7vrhwrgsjrkf1f0yvfbjy1kvzvla0hjkl"; depends=[curl dplyr lazyeval magrittr memoise progress purrr qs rappdirs rlang sf stringr tibble tidyr]; }; LAM = derive2 { name="LAM"; version="0.5-15"; sha256="18p8w2n2k4788vpxhdxnmcafwj7a5bvihk530fiynkra3xrn1cr4"; depends=[CDM Rcpp RcppArmadillo sirt]; }; LANDD = derive2 { name="LANDD"; version="1.1.0"; sha256="13szkww9nw8zywfrqd8mwgj9csgragm0bx8ia52rcpakpc3hv3hx"; depends=[BH doParallel fdrtool foreach GGally ggplot2 GOSemSim GOstats igraph intergraph Matrix modeest mvtnorm pROC Rcpp]; }; @@ -2437,6 +2442,7 @@ in with self; { LARGB = derive2 { name="LARGB"; version="0.1.0"; sha256="0ksyagp4wy1rm7kll6rgdx2735k6ywlaf08d6yys9cv090rpc8l3"; depends=[dplyr imager]; }; LARisk = derive2 { name="LARisk"; version="0.1.0"; sha256="05pszgm53dndq114qqb3kcddbvc16a9mgalxjsyh56aa2a4wh7q6"; depends=[Rcpp]; }; LAWBL = derive2 { name="LAWBL"; version="1.4.0"; sha256="13drqwyg6avmsn3s2d521x1cvlqg85qv999lwnvnyszvz8grahcr"; depends=[coda MASS]; }; + LBC = derive2 { name="LBC"; version="1.0"; sha256="027q5dk771a5v7g0il7kcczfyf6cqfb4vb3y0j7gwr02bq4360wm"; depends=[]; }; LBSPR = derive2 { name="LBSPR"; version="0.1.6"; sha256="075wcjhvp90fj37ihrplnrc0vy8wpav5qivkw1rgv00fa8xj7pw0"; depends=[dplyr ggplot2 gridExtra plotrix RColorBrewer Rcpp shiny tidyr]; }; LCA = derive2 { name="LCA"; version="0.1.1"; sha256="014kih33y8b9nls0pcigw68jbz7vgnq8w1xbwm2d37g1m5y6xlyw"; depends=[]; }; LCAextend = derive2 { name="LCAextend"; version="1.3"; sha256="1l75y3vkbsmsm3pjd5pwy0hlv6gz5ryxs4pkx9aiyhxz2y9wnhpb"; depends=[boot kinship2 mvtnorm rms]; }; @@ -2475,7 +2481,7 @@ in with self; { LIM = derive2 { name="LIM"; version="1.4.6"; sha256="03x1gnm06bw1wrzc01110bjzd2mvjdzbc2mbrazh22jrmb32w5d8"; depends=[diagram limSolve]; }; LINselect = derive2 { name="LINselect"; version="1.1.3"; sha256="1qxqwph5ja2kf1s4ggsv8w6hjgf9mr53a0gahhjix2v78309z42g"; depends=[elasticnet gtools MASS mvtnorm pls randomForest]; }; LIStest = derive2 { name="LIStest"; version="2.1"; sha256="1gk253v3f1jcr4z5ps8nrqf1n7isjhbynxsi9jq729w7h725806a"; depends=[]; }; - LKT = derive2 { name="LKT"; version="1.0"; sha256="1bpiszm88kx44mc8262x29idmmhhh7k39d213mi5vnap1744yb7i"; depends=[caret data_table glmnet glmnetUtils knitr LiblineaR lme4 Matrix pROC SparseM]; }; + LKT = derive2 { name="LKT"; version="1.0.1"; sha256="1a3mpjzl04gp7688gaknp8la84ljsj49id06b5y6r51kyiqip6dv"; depends=[data_table glmnet glmnetUtils LiblineaR lme4 Matrix SparseM]; }; LLM = derive2 { name="LLM"; version="1.1.0"; sha256="0kxppzaim7cmjawg5rjih4dsz8adq0asairgq3vx5lyjppb2cybx"; depends=[partykit reghelper RWeka scales stringr survey]; }; LLSR = derive2 { name="LLSR"; version="0.0.3.1"; sha256="0nci8p3gw35a3ifwrq7r2jih718p2iwmmh3495qnh0fk304y7kbi"; depends=[crayon digest dplyr ggplot2 minpack_lm nleqslv openxlsx rootSolve svDialogs svglite]; }; LMERConvenienceFunctions = derive2 { name="LMERConvenienceFunctions"; version="3.0"; sha256="0jg889qh5a9wdi01yiw6z7kivs9dzh5dcq39f4zifdpqzglhshzb"; depends=[fields LCFdata lme4 Matrix mgcv]; }; @@ -2533,6 +2539,7 @@ in with self; { LWFBrook90R = derive2 { name="LWFBrook90R"; version="0.4.4"; sha256="1jvyfk52gcq3dl8fws652ffwdp0gadrkmcd0n6b0z4r1flrfmaph"; depends=[data_table doFuture foreach future iterators progressr vegperiod]; }; LZeroSpikeInference = derive2 { name="LZeroSpikeInference"; version="1.0.3"; sha256="15x29afaq13iwlj66h97k3kczg9rfgp6i9d76rji58hfgh8i8by6"; depends=[]; }; LaF = derive2 { name="LaF"; version="0.8.4"; sha256="1mj010bl4ql0hm33vl0dd08s9dab11y9fa32nsqs6kbb22gjzk6p"; depends=[Rcpp]; }; + LabApplStat = derive2 { name="LabApplStat"; version="1.4.3"; sha256="12brjwd0hazc3s69wjybmfvapslcx87npa647hlrcfjxzg46x9ar"; depends=[emmeans ggplot2 ggraph]; }; LabRS = derive2 { name="LabRS"; version="0.1.0"; sha256="1a9qafimia83qldsif5wfqx273mvqbx22p5i0hg8n4jvj4vzpy2w"; depends=[knitr]; }; LabourMarketAreas = derive2 { name="LabourMarketAreas"; version="3.2.5"; sha256="1fhr677mp7dp18q9yvqycsmyqvqh007y3pc8r500n2axiczjzkqg"; depends=[data_table maptools rgdal rgeos sp spdep]; }; LadR = derive2 { name="LadR"; version="1.0.6"; sha256="14n58y1p14wwxwwrbdqv2kkplma8ficpqx8nd22qp931idijpsji"; depends=[L1pack]; }; @@ -2607,7 +2614,7 @@ in with self; { LowRankQP = derive2 { name="LowRankQP"; version="1.0.4"; sha256="0cg8f42s15vphnifw6gnrhxaj6j5hmgbq8xki5mkwjsizd0ch5na"; depends=[]; }; LowWAFOMNX = derive2 { name="LowWAFOMNX"; version="1.1.1"; sha256="0f75qsv6pisgvk39yagzfxscnyfsgh63rmhp4gpybpl0pqmjp48x"; depends=[Rcpp RSQLite]; }; LowWAFOMSobol = derive2 { name="LowWAFOMSobol"; version="1.1.1"; sha256="1ym3i2m1am356di9lcp5nfmxq0np3c4bwsv6bbmf7hg02j7dhwi4"; depends=[Rcpp RSQLite]; }; - Luminescence = derive2 { name="Luminescence"; version="0.9.15"; sha256="0mjzrq5qpkyswvgjf3bw24vjhqw94d06blc3c1fhr8pq8vglms6q"; depends=[bbmle data_table DEoptim httr lamW matrixStats minpack_lm plotrix raster Rcpp RcppArmadillo readxl shape XML zoo]; }; + Luminescence = derive2 { name="Luminescence"; version="0.9.16"; sha256="0ia88l8p601fq01qfjwypwynvij07bysmk6bglis7h6cvkbxbkip"; depends=[bbmle data_table DEoptim httr lamW matrixStats mclust minpack_lm plotrix raster Rcpp RcppArmadillo readxl shape XML zoo]; }; M2SMF = derive2 { name="M2SMF"; version="2.0"; sha256="160qjrb3mxybvr4z6zra6rzf6scyrb9mplw36gqlfxj418ndnmm1"; depends=[dplyr MASS]; }; M2SMJF = derive2 { name="M2SMJF"; version="1.0"; sha256="0v4sg5h3h2pjp996jspv206c8cymjpn1fg38ivaw12s7bmx8j409"; depends=[dplyr MASS]; }; M3 = derive2 { name="M3"; version="0.3"; sha256="1l40alk166lshckqp72k5zmsgm7s5mgyzxlp11l64mgncjwkw2r3"; depends=[mapdata maps ncdf4 rgdal]; }; @@ -2615,7 +2622,7 @@ in with self; { MABOUST = derive2 { name="MABOUST"; version="1.0.1"; sha256="044k29nibl5zc32zz2696kbhrz5dafgaikgmjqznsq25p48si453"; depends=[Rcpp RcppArmadillo]; }; MACER = derive2 { name="MACER"; version="0.1.1"; sha256="006f15s75hnyacc31ni4gf1r4j32hlv5bqmnnl9fkcgf9jxs9hw4"; depends=[ape httr rentrez]; }; MADPop = derive2 { name="MADPop"; version="1.1.2"; sha256="0hwnkjrc3w9x3gha0y70fidfc587b6gfdhzwzdzrfvxrhsdy05yd"; depends=[BH Rcpp RcppEigen rstan StanHeaders]; }; - MAGEE = derive2 { name="MAGEE"; version="1.0.0"; sha256="1zrvkbqv1pzcm78xn7wdqw480iwd2vb2kidh2siqny2ahfab6440"; depends=[CompQuadForm foreach GMMAT MASS Matrix Rcpp RcppArmadillo SeqArray SeqVarTools]; }; + MAGEE = derive2 { name="MAGEE"; version="1.0.1"; sha256="09csg35kmq8i5hg8vpnjsss1h007kznkysb38jkhzcps5j9hxccx"; depends=[CompQuadForm foreach GMMAT MASS Matrix Rcpp RcppArmadillo SeqArray SeqVarTools]; }; MAGNAMWAR = derive2 { name="MAGNAMWAR"; version="2.0.4"; sha256="1asr18byrgy6bkpxpmnkczgr3dam6ymf30lw6izq112krc891bg4"; depends=[ape coxme doParallel dplyr foreach iterators lme4 multcomp plyr qqman seqinr survival]; }; MAINT_Data = derive2 { name="MAINT.Data"; version="2.6.2"; sha256="0c2llzjhrv1jn5zna654bjgyq5q0hqwzfv9kda9mfjf20pfc34my"; depends=[GGally ggplot2 MASS mclust miscTools pcaPP Rcpp RcppArmadillo robustbase rrcov sn withr]; }; MALDIquant = derive2 { name="MALDIquant"; version="1.20"; sha256="1h9i158czlzwbn5zakkqd2ggc9g90r73vdspmp6kgfcmy9frvwzz"; depends=[]; }; @@ -2734,6 +2741,7 @@ in with self; { MIIPW = derive2 { name="MIIPW"; version="0.1.0"; sha256="05l75pr81fv7b7w24mhvww5c49211bnxvksvy7kiwypc592zwjqk"; depends=[matlib R2jags]; }; MIIVsem = derive2 { name="MIIVsem"; version="0.5.8"; sha256="1qb1xrxhgj6b0l24spbp80f0rm8v41bqsdachqjhsacq2lgga259"; depends=[boot car lavaan Matrix numDeriv]; }; MILC = derive2 { name="MILC"; version="1.0"; sha256="14xsiw5al6kixwvf3ph0dlm8s13gsbqvzb92da6ng3x4iiyb1g0w"; depends=[]; }; + MIMSunit = derive2 { name="MIMSunit"; version="0.11.1"; sha256="12jxdcahja9p84ym1zbhgjz3yh1nclbnvnjg7ns2gmipsa73yhxp"; depends=[caTools dplyr dygraphs ggplot2 lubridate magrittr matlab plyr R_utils RColorBrewer readr shiny signal stringr tibble xts]; }; MINTplates = derive2 { name="MINTplates"; version="1.0.1"; sha256="1jj51314p2ni3f3ncpd8gp7pgshhsp97ic123d732sc9xr0h5rnr"; depends=[]; }; MIPHENO = derive2 { name="MIPHENO"; version="1.2"; sha256="0hcaq66biv4izszdhqkgxgz91mgkjk1yrwq27fx07a2zmzj44sfv"; depends=[doBy gdata]; }; MIRES = derive2 { name="MIRES"; version="0.1.0"; sha256="17k6f73qx85klhhn247nr6h7sinpabq9crlc5ag7qm6z7k6mr370"; depends=[BH cubature dirichletprocess Formula HDInterval logspline mvtnorm nlme pracma Rcpp RcppEigen rstan rstantools StanHeaders truncnorm]; }; @@ -2742,6 +2750,7 @@ in with self; { MImix = derive2 { name="MImix"; version="1.0"; sha256="033gxr0z2xba0pgckiigblb1xa94wrfmpgv3j122cdynjch44j4r"; depends=[]; }; MInt = derive2 { name="MInt"; version="1.0.1"; sha256="1nk02baainxk7z083yyajxrnadg2y1dnhr51fianibvph1pjjkl6"; depends=[glasso MASS testthat trust]; }; MKLE = derive2 { name="MKLE"; version="0.05"; sha256="00hcihjn3xfkzy0lvb70hl2acjkwk6s3y7l4gprix24shnblvxzi"; depends=[]; }; + MKMeans = derive2 { name="MKMeans"; version="1.0"; sha256="1i0p2mvgvdk37y7sidmshg8214z859i5fy6ly0p92shzdg8q5m9l"; depends=[]; }; MKclass = derive2 { name="MKclass"; version="0.3"; sha256="0sw0h99k24418iqvvq247kg5558y9mgashr5amay7gbf2va79v6j"; depends=[]; }; MKdescr = derive2 { name="MKdescr"; version="0.7"; sha256="056gp5fig8l4wgv3hzphr5q81z1zi6x88abc4kzgg8f1ljpn37xf"; depends=[ggplot2 scales]; }; MKinfer = derive2 { name="MKinfer"; version="0.6"; sha256="13ga5pwlnlm28dm6nxg4ccc7br51jg7wvwp61sx31yvzgr5m45ld"; depends=[arrangements boot ggplot2 MKdescr nlme]; }; @@ -2835,7 +2844,7 @@ in with self; { MSCMT = derive2 { name="MSCMT"; version="1.3.4"; sha256="1vh0i9nxqiy3qdnb7z7cn5kpp2jahdmaqpnv7q5650pkswhwmfpc"; depends=[ggplot2 lpSolve lpSolveAPI Rdpack Rglpk]; }; MSCquartets = derive2 { name="MSCquartets"; version="1.1.0"; sha256="1rik3ma537qkj63j5v0gcf6g3qi68z49w21z96mm88b7nq15xpjh"; depends=[ape doParallel foreach phangorn RandomFieldsUtils Rdpack zipfR]; }; MSCsimtester = derive2 { name="MSCsimtester"; version="0.0.9"; sha256="02zlyb3lzi4w4dqnzhdiivqsqrm4z1l4ziy2vs13vxygm2g0mn1k"; depends=[ape kSamples Rdpack]; }; - MSEtool = derive2 { name="MSEtool"; version="3.2.0"; sha256="0xlbq5c32dhv610van59w3kdk7vhpsc8g6s8xsv0pjglz7z4j1hv"; depends=[abind dplyr ggplot2 Rcpp RcppArmadillo snowfall]; }; + MSEtool = derive2 { name="MSEtool"; version="3.3.0"; sha256="0sgiwfjc24c49w4vblasy84clgwjgzcgii1fi4jkc940k6vcz4kf"; depends=[abind dplyr ggplot2 Rcpp RcppArmadillo snowfall]; }; MSG = derive2 { name="MSG"; version="0.8"; sha256="178209p30fmh3c03w8iakz306h2xswcj4ffxg1s9s8md156rbj7s"; depends=[RColorBrewer]; }; MSGARCH = derive2 { name="MSGARCH"; version="2.42"; sha256="1n5fvj6yx8sfi1vizw89410hc0d37w8mpqfsksdv01pgnfdcs11a"; depends=[coda expm fanplot MASS numDeriv Rcpp RcppArmadillo zoo]; }; MSGARCHelm = derive2 { name="MSGARCHelm"; version="0.1.0"; sha256="172xpvs98b9ay44ffb8bp9k4zsjzhy92pp7bv3d1j186pqhl13ib"; depends=[forecast MSGARCH nnfor]; }; @@ -2889,6 +2898,7 @@ in with self; { ManyTests = derive2 { name="ManyTests"; version="1.2"; sha256="1mi7wvnkcd95126f1h8vl8skn397yd2zqvcswprqar54p161wgyi"; depends=[]; }; Map2NCBI = derive2 { name="Map2NCBI"; version="1.4"; sha256="1ssqnm9g5p0nnhdyp9dqbbsz3hw8jzdwy0rv3csp8fxm0f1bi1kb"; depends=[rentrez]; }; MapGAM = derive2 { name="MapGAM"; version="1.2-5"; sha256="0ardqsa7smx0syh1l591bm6a1rb7kvcyw3rlb3hkfk8rk4k60qmr"; depends=[colorspace gam maptools sp survival]; }; + MapeBay = derive2 { name="MapeBay"; version="0.1.0"; sha256="1w1lpnm8fd5gmv4ggrlmkaaj45wyx3yclx3fb2mdrp7iyg4rx34c"; depends=[BH broom car dplyr DT heplots highcharter htmltools MANOVA_RM moments MultBiplotR MVN mvnormtest nortest purrr Rcpp RcppEigen RcppParallel reshape rstan rstantools shiny shinycssloaders shinydashboard shinydashboardPlus StanHeaders stringr tibble vegan waiter]; }; Mapinguari = derive2 { name="Mapinguari"; version="1.0.0"; sha256="1jfqinfr6wkpmkp4jm9ixgawcywm3n1ni03h6zngvx74saz7kd3g"; depends=[dplyr magrittr raster rgdal rlang stringr testthat]; }; MareyMap = derive2 { name="MareyMap"; version="1.3.6"; sha256="0zbg72vck9p14zk1924407n5ap84qiisqhbq1vr715sw67fwdcxi"; depends=[]; }; MargCond = derive2 { name="MargCond"; version="1.0.0"; sha256="07qh1lgy8ds11cwlb4rxkl6aiph91zq29sy27b8wwxalycdgjrg8"; depends=[gee lme4 MASS Matrix]; }; @@ -2902,7 +2912,7 @@ in with self; { MatManlyMix = derive2 { name="MatManlyMix"; version="1.1.1"; sha256="1d2vd5b9lirdybjclxh0nn4mghq64qjj4l8vnj95cni5pfa18a2c"; depends=[]; }; MatSkew = derive2 { name="MatSkew"; version="0.1.5"; sha256="019v2b1r0bvw84xs50smjb3jdz7gd2adz5d84xd8zq43lnml96d1"; depends=[]; }; MatTransMix = derive2 { name="MatTransMix"; version="0.1.15"; sha256="1s2wmhiqn024x9l217xak3wp3dbd3mfrih70xc5mc1b4555f2fbm"; depends=[mvtnorm]; }; - MatchIt = derive2 { name="MatchIt"; version="4.3.1"; sha256="1pzfaab8ny4gb5gnj5fd6fgqi826i6m2krjafsmdc91265904ks0"; depends=[backports Rcpp RcppProgress]; }; + MatchIt = derive2 { name="MatchIt"; version="4.3.2"; sha256="1fw1lb3w27652bvy612f9c09dzb02w3nrjzr1gn3svkldsaic4bg"; depends=[backports Rcpp RcppProgress]; }; MatchLinReg = derive2 { name="MatchLinReg"; version="0.7.3"; sha256="1si0zn6vlgyj08841hfjx8an96a8ipnawl4zbalabmpy7r5bfwx8"; depends=[Hmisc Matching]; }; MatchThem = derive2 { name="MatchThem"; version="1.0.1"; sha256="1g3vzbxrbmgmxlnn6i2i1wdk949i547ywgxcw05na71kc1nvwvfd"; depends=[MatchIt mice rlang survey WeightIt]; }; Matching = derive2 { name="Matching"; version="4.9-11"; sha256="123np8gwjrbmkl65kj7qfa52i9msnkjyhvj4pwwqh5mkca2clw8w"; depends=[MASS]; }; @@ -2920,7 +2930,7 @@ in with self; { MaxentVariableSelection = derive2 { name="MaxentVariableSelection"; version="1.0-3"; sha256="1cmxfdkm5k85b4ivlfy5521hkfj0gq2pb1qlxxklh0fprw87kp9c"; depends=[ggplot2 raster]; }; MaximinInfer = derive2 { name="MaximinInfer"; version="1.0.0"; sha256="1m6xb4blpahgm7b4h96rdg2qakgn893sfjk45flxnvn8gipbwlrh"; depends=[CVXR glmnet intervals MASS SIHR]; }; MazamaCoreUtils = derive2 { name="MazamaCoreUtils"; version="0.4.10"; sha256="0085miwwda387k33hf6l8p3f0pp8714nq0whzmf89l3yn932ai33"; depends=[devtools digest dplyr futile_logger lubridate magrittr purrr rlang rvest stringr tibble xml2]; }; - MazamaLocationUtils = derive2 { name="MazamaLocationUtils"; version="0.2.0"; sha256="00gzwmz0jvkf2khwjha4n6xylwl2iqbz7a4wm06mhqj179sf9v6q"; depends=[digest dplyr geodist httr jsonlite leaflet lubridate magrittr MazamaCoreUtils MazamaSpatialUtils readr rlang sp stringr]; }; + MazamaLocationUtils = derive2 { name="MazamaLocationUtils"; version="0.2.7"; sha256="12ghd0h9127isbxkaapnl94r2snfpa8dcmp9j9h51knfqjaj6qmw"; depends=[digest dplyr geodist httr jsonlite leaflet lubridate magrittr MazamaCoreUtils MazamaSpatialUtils readr rlang stringr]; }; MazamaRollUtils = derive2 { name="MazamaRollUtils"; version="0.1.3"; sha256="1433xy64n3wpxg9d0jlwdfp8hlvmq0ndg3fv6kfxq3pasm600jgc"; depends=[Rcpp]; }; MazamaSpatialPlots = derive2 { name="MazamaSpatialPlots"; version="0.1.2"; sha256="1gkxq6lnvdv24nvc34fmxz4qilzljxcls1lq29a5ag67dffz7kcj"; depends=[dplyr magrittr MazamaCoreUtils MazamaSpatialUtils rlang sf sp tmap]; }; MazamaSpatialUtils = derive2 { name="MazamaSpatialUtils"; version="0.7.6"; sha256="07qr6cwa29brsp567vjhfv8pkqijxhhz98bxvagrpjj5gbx1179s"; depends=[cleangeo countrycode dplyr magrittr MazamaCoreUtils rgdal rgeos rlang rmapshaper sp stringr]; }; @@ -2963,7 +2973,7 @@ in with self; { Metatron = derive2 { name="Metatron"; version="0.1-1"; sha256="0apz2k3za19px1bcg4ls0axaljrpxnqhs86b6s862c370sspc1x8"; depends=[lme4 Matrix mpt]; }; Meth27QC = derive2 { name="Meth27QC"; version="1.1"; sha256="0ad30svs2kjzmmyvcm0jmv64iyq7slp1x1xl35h2rv1b6zbd4658"; depends=[gplots]; }; MethComp = derive2 { name="MethComp"; version="1.30.0"; sha256="1vmwb4zw4gm2x0j2nzm2vjfj7x19ws8njr6dcglzjpbbha7nxjp6"; depends=[coda nlme rjags]; }; - MethodCompare = derive2 { name="MethodCompare"; version="0.1.0"; sha256="0zl20v8k8bhn3skbpzdiglywrqghwf0r42q2jn8zmq4x0drvjzpl"; depends=[nlme]; }; + MethodCompare = derive2 { name="MethodCompare"; version="0.1.1"; sha256="1akp4azjnia142bdjjdfaj55jipmrcbwcy3jx27l765biaqws97c"; depends=[nlme]; }; Methplot = derive2 { name="Methplot"; version="1.0"; sha256="0aaqss9zfn55qi45jffxkksnkw510npjnkygafx49vl77bkagqh5"; depends=[ggplot2 reshape]; }; MethylCapSig = derive2 { name="MethylCapSig"; version="1.0.1"; sha256="16ch9aldr6a9jn42h387n7qvnzs0yx28f2yj6xq0kp476q7rf4ql"; depends=[geepack]; }; Metrics = derive2 { name="Metrics"; version="0.1.4"; sha256="0fh8qbjlwzagh272lgwr4bxcqcjb1qpz53mgs8rzlvncax6nk5bk"; depends=[]; }; @@ -2980,6 +2990,7 @@ in with self; { MicroMacroMultilevel = derive2 { name="MicroMacroMultilevel"; version="0.4.0"; sha256="1q5cyqr4hdl1wp2isk6p4p084i83kg6hd406wdp1nj9lv5i0xvgw"; depends=[]; }; MicroNiche = derive2 { name="MicroNiche"; version="1.0.0"; sha256="166ci4crkwnnh05rhs5hyrljgm4cdf7gp0ff8kjxjmd60byw80mz"; depends=[ggplot2 reshape2]; }; MicroSEC = derive2 { name="MicroSEC"; version="1.1.3"; sha256="1imdxm15f792xw5kc9lhry5jsw739j6y3f2fs64abj22hqxfwypi"; depends=[BiocGenerics Biostrings data_table dplyr GenomeInfoDb GenomicAlignments gtools magrittr openxlsx R_utils Rsamtools stringr tidyr]; }; + MicrobiomeStat = derive2 { name="MicrobiomeStat"; version="1.0"; sha256="1pi1lvy6lqdm3niw69p6j86z1nbix4bc1846rz06qfss0s5yas0q"; depends=[foreach ggplot2 ggrepel lmerTest MASS Matrix matrixStats modeest statmod]; }; Microsoft365R = derive2 { name="Microsoft365R"; version="2.3.2"; sha256="1qc4716mvkfvxwkzjihf00my6y4va3day3lnh5iwpb5k9kgrnhgm"; depends=[AzureAuth AzureGraph curl httr jsonlite mime R6 vctrs]; }; MinBAR = derive2 { name="MinBAR"; version="1.1.2"; sha256="099afazil0gfs5yq92clc7ahis5azyvlql4zs7fhp82v9m6b80qj"; depends=[dismo ecospat geosphere lattice latticeExtra maxnet raster rgdal sp]; }; MinEDfind = derive2 { name="MinEDfind"; version="0.1.3"; sha256="1y0iv92mp7hf14vrj54qd0yvmjrv52jv3vg25kc5q7pml63njkqa"; depends=[ggplot2 gridExtra Iso]; }; @@ -2991,7 +3002,7 @@ in with self; { MixAll = derive2 { name="MixAll"; version="1.5.1"; sha256="1jsh29ygy1n7lbz93ks725li9hnvfa0kp1qik13m72nmgw7g7q5a"; depends=[Rcpp rtkore]; }; MixGHD = derive2 { name="MixGHD"; version="2.3.6"; sha256="0vx32ay7r8d22j53fsi6ff8l2zg97524dy7ir59ldafjfn15nc7k"; depends=[Bessel cluster e1071 ghyp MASS mixture mvtnorm numDeriv]; }; MixMAP = derive2 { name="MixMAP"; version="1.3.4"; sha256="0gxghym5ghbyxf589hda2fhv5l3x5jvm6i40x5xdwx4hadcn8k9a"; depends=[lme4]; }; - MixMatrix = derive2 { name="MixMatrix"; version="0.2.4"; sha256="1bmd99p98brp8nzqhf442py2hmdj2vnzn15qwhrdskh6i0gzaqc4"; depends=[CholWishart Rcpp RcppArmadillo]; }; + MixMatrix = derive2 { name="MixMatrix"; version="0.2.6"; sha256="007vx59v5h3pfawg6slqgbs3b8dvbhcfh4cvasfydidiiyaggjdc"; depends=[CholWishart Rcpp RcppArmadillo]; }; MixOptim = derive2 { name="MixOptim"; version="0.1.2"; sha256="14blyb1dqbdb14rby4nrggpqdx6b43lbb2xwi3059biq9mrj3a2x"; depends=[desirability ggplot2 patchwork rlang]; }; MixRF = derive2 { name="MixRF"; version="1.0"; sha256="1av1wx7wmfc3z8a4bc6g3i3b807nc28n3s2rs3yh0rcwq1pfl0ir"; depends=[doParallel foreach lme4 randomForest]; }; MixSAL = derive2 { name="MixSAL"; version="1.0"; sha256="15dymyzfs3bwskaf6xndj291g6nhw7k1q93y1cba55a6fdjh5qz9"; depends=[MASS]; }; @@ -3034,6 +3045,7 @@ in with self; { MonteCarlo = derive2 { name="MonteCarlo"; version="1.0.6"; sha256="1jwq3by8zfy6sbzahcj5l0vicqn7yyqpb7xhfsaymfspm7xyq6pj"; depends=[abind codetools reshape rlecuyer snow snowfall]; }; MonteCarloSEM = derive2 { name="MonteCarloSEM"; version="0.0.3"; sha256="1kamhwqw3px5l4pz50zksfsfhjv03wc31xi8v6fl6h9xxmvw52gd"; depends=[lavaan Matrix]; }; Morpho = derive2 { name="Morpho"; version="2.9"; sha256="1gsns3ab9x24czl53p15cja9vw881iwnhc0ix50i8vzkx184wsib"; depends=[bezier colorRamps doParallel foreach jsonlite MASS Matrix Rcpp RcppArmadillo rgl Rvcg]; }; + MorphoTools2 = derive2 { name="MorphoTools2"; version="0.9.0"; sha256="0y7vhqa272bjqy5fbdy0cgawgghvds7czz8v790nkg8hkra557wl"; depends=[ade4 candisc car class ellipse fpc heplots MASS plot3D StatMatch vegan]; }; MorseGen = derive2 { name="MorseGen"; version="1.2"; sha256="1kq35n00ky70zmxb20g4mwx0hn8c5g1hw3csmd5n6892mbrri8s9"; depends=[]; }; MortCast = derive2 { name="MortCast"; version="2.6-1"; sha256="0w7fd5n3wafix4l29svnja0l675pdpj64vgh113mzsn08h3kpwid"; depends=[wpp2017]; }; MortalityGaps = derive2 { name="MortalityGaps"; version="1.0.0"; sha256="0nfm8xa7gnshrl8hsvmvr3za8nbppp7f7i5h4ni204w7xwvh8jxc"; depends=[crch forecast MASS pbapply]; }; @@ -3076,7 +3088,9 @@ in with self; { MultiVarMI = derive2 { name="MultiVarMI"; version="1.0"; sha256="1mlaprg3cfmfwrq7wh64fmyv1wpdnil7wpcrcg3921qydk65py6z"; depends=[BinOrdNonNor corpcor CorrToolBox Matrix moments norm PoisNonNor]; }; MultiVarSel = derive2 { name="MultiVarSel"; version="1.1.3"; sha256="18wcw80m5knv6hbzczjsx3lf7sn9n84z12zz844agp6234im163p"; depends=[glmnet Matrix]; }; MultinomialCI = derive2 { name="MultinomialCI"; version="1.2"; sha256="0cd6yxszbxdgpvfkfx5d3w3f0157lxljpkwlnijb99i911rbyflp"; depends=[]; }; + MultipleBreakpoints = derive2 { name="MultipleBreakpoints"; version="0.1.0"; sha256="1vzz5dj2jml03pxdp3is3vg0gc6fwy08m1jx9qmiv6rhfzsdmfpk"; depends=[Rdpack]; }; MultipleBubbles = derive2 { name="MultipleBubbles"; version="0.2.0"; sha256="047a1pql3jf500gwlap6ws5z7mx0sqmdq6jbql24nl5iypi9jqpf"; depends=[foreach MASS]; }; + MultipleRegression = derive2 { name="MultipleRegression"; version="0.1.0"; sha256="1l9rn6zc60ih7lyydrsy1ih94ksim14yd7kiapiga58mr7abi45h"; depends=[crayon]; }; MultiplierDEA = derive2 { name="MultiplierDEA"; version="0.1.18"; sha256="1d7cqa44yayyhwkl5wkp68b7vxakfnlwkprs811z8c2fmfm8vk5r"; depends=[lpSolveAPI]; }; MultisiteMediation = derive2 { name="MultisiteMediation"; version="0.0.4"; sha256="0kkw6zxw29qmgd9nlgqjlyh99icxzkkqnpzzanxx8pn7m2ww0wkf"; depends=[ggplot2 lme4 MASS psych statmod]; }; MultivariateAnalysis = derive2 { name="MultivariateAnalysis"; version="0.4.4"; sha256="0vpk7iplmb0cyrqal90m1y4ym8wng2b8k9ydh26xaga4r974qd2p"; depends=[ape biotools candisc corrplot crayon PCAmixdata]; }; @@ -3084,7 +3098,7 @@ in with self; { MultiwayRegression = derive2 { name="MultiwayRegression"; version="1.2"; sha256="1w0yd3nwrqpk5nhnrcrd06fbdhg4kizx2p8mpspqnw8qcn970pfl"; depends=[MASS]; }; MvBinary = derive2 { name="MvBinary"; version="1.1"; sha256="1lrrxvphxv4gmlazx67q4bck9373nqylqgkwcjzwb52291a3zyiv"; depends=[mgcv]; }; My_stepwise = derive2 { name="My.stepwise"; version="0.1.0"; sha256="10wka6kzk8krwdsyjfnn78dfqflq4zg3vjkk0i2ywjm5vap6aqa5"; depends=[car lmtest survival]; }; - N2R = derive2 { name="N2R"; version="0.1.1"; sha256="1wjz145d5v1ml2zyvw2znvv550sn6cm7c3rdshg450f7c4j7qyp8"; depends=[Matrix Rcpp RcppEigen RcppSpdlog]; }; + N2R = derive2 { name="N2R"; version="1.0.0"; sha256="1pxxj8s0ybydsm1x9s4841arqwhxvi1b6nyd8j7gs4b08b9n6yxm"; depends=[Matrix Rcpp RcppEigen RcppSpdlog]; }; NACHO = derive2 { name="NACHO"; version="1.1.0"; sha256="0ji9kcfbnsrn6h4p0y0ly5nwyfwh3y01wm80a7syg4mjj0nd4z0g"; depends=[cli crayon dplyr ggbeeswarm ggforce ggplot2 ggrepel knitr magrittr purrr rlang rmarkdown rstudioapi scales sessioninfo shiny shinyWidgets tibble tidyr]; }; NADA = derive2 { name="NADA"; version="1.6-1.1"; sha256="0jp4mqr77cx7q5lff84s6wb0dwjy9mi0jyhbjc5fsx50bdczc3v7"; depends=[survival]; }; NADA2 = derive2 { name="NADA2"; version="1.0.1"; sha256="01x3ylrp3kizq9aa0wyaj4jbyr4si2vi8rc3b8r0bllnsl2ia2ix"; depends=[cenGAM coin EnvStats fitdistrplus Kendall mgcv multcomp NADA perm survival survminer vegan]; }; @@ -3111,7 +3125,7 @@ in with self; { NCmisc = derive2 { name="NCmisc"; version="1.1.6"; sha256="0ycc7b7z26a922hdjq8p4hjljjh09il24h3023k248pcsnbmka1a"; depends=[proftools]; }; NCutYX = derive2 { name="NCutYX"; version="0.1.0"; sha256="0r2ghnvrbya3p1d8rb5bsnz5v852vvc6rq65yafn2xzr7886wrg2"; depends=[fields glmnet MASS mvtnorm Rcpp RcppEigen]; }; NDP = derive2 { name="NDP"; version="0.1.0"; sha256="0wmld7g4w3d7d8lyj4132h3jpr8ng8kpy4ssqjp8r0lqwif2i86b"; depends=[rmarkdown shiny]; }; - NEONiso = derive2 { name="NEONiso"; version="0.5.1"; sha256="1sb74ilj5vwrs5fm4lfba19vgls33af8lfqc2jdl7rs1ijpvki7v"; depends=[data_table dplyr httr lifecycle lubridate magrittr neonUtilities R_utils rhdf5 rlang tidyselect zoo]; }; + NEONiso = derive2 { name="NEONiso"; version="0.5.2"; sha256="1sbfsng5kp27ng2j1v7g4b8y48fkp6c71q5cj3z13vr06nmxp16z"; depends=[data_table downloader dplyr httr jsonlite lifecycle lubridate magrittr neonUtilities R_utils rhdf5 rlang tidyselect zoo]; }; NEff = derive2 { name="NEff"; version="1.1"; sha256="16ys1fi28kbzg3am9vz1c5pc9x0ac47pl6za04h63lspk99yplzk"; depends=[bit msm]; }; NEpiC = derive2 { name="NEpiC"; version="1.0.1"; sha256="11zf112xcsg3k93vks2fnsflw2v2d56a0bsjpd460d21k3gipfz8"; depends=[igraph PairedData]; }; NFCP = derive2 { name="NFCP"; version="1.2.0"; sha256="1dav6h0bk4c787g5wskpsfqdbsgalq0xpbzq6nk1sg54g6wd76q2"; depends=[curl FKF_SP LSMRealOptions MASS mathjaxr numDeriv Rdpack rgenoud]; }; @@ -3150,7 +3164,7 @@ in with self; { NMdata = derive2 { name="NMdata"; version="0.0.9"; sha256="0ldab8brzhxpjgswh9fgla9xb2k703vf8syd5im3ixjz6ngmkn2m"; depends=[data_table]; }; NMproject = derive2 { name="NMproject"; version="0.6.7"; sha256="0sri85n5i5w56bmbcg3yca3r5lh9j59gwwjidwhvxvxbg6czw6n7"; depends=[crayon diffobj dplyr DT dygraphs git2r htmltools lifecycle magrittr miniUI reshape2 rlang rmarkdown rprojroot rstudioapi shiny stringr tidyr usethis]; }; NNMIS = derive2 { name="NNMIS"; version="1.0.1"; sha256="1w2i4xlx249p589yqdgbx1ra406ycxw729vbk1lqadbn71m6blaz"; depends=[survival]; }; - NNS = derive2 { name="NNS"; version="0.8.2"; sha256="0ipn6zrqr83wabdb66s663v8nasj48p48ah4arha4slfmsrnhbkl"; depends=[caret data_table doParallel dtw dynlm meboot Quandl Rfast rgl stringr tdigest zoo]; }; + NNS = derive2 { name="NNS"; version="0.8.3"; sha256="0pg848qdf2sg6qldym3wxxi60bngwb63gagx0xw4wlwr15p0i02h"; depends=[caret data_table doParallel dtw dynlm meboot Quandl Rfast rgl stringr tdigest tseries zoo]; }; NNTbiomarker = derive2 { name="NNTbiomarker"; version="0.29.11"; sha256="0sqlf7vzhpmq2g98c2qlrcqn3ba4ycfxbczgcjiqqhqsvgkpacc1"; depends=[magrittr mvbutils shiny stringr xtable]; }; NNbenchmark = derive2 { name="NNbenchmark"; version="3.2.0"; sha256="086smk3xy6p6ianw41h3gx806q7h28v1dg9d3khsrwyyf9gn8xyp"; depends=[pkgload R6]; }; NO_PING_PONG = derive2 { name="NO.PING.PONG"; version="0.1.4"; sha256="10q5h9kafni3wlnn1gdsgd9a90km5snrjz1nr0ilafmdvw9vg6v1"; depends=[MASS MCMCglmm metafor]; }; @@ -3167,7 +3181,7 @@ in with self; { NPMLEmix = derive2 { name="NPMLEmix"; version="1.2"; sha256="056jb3kz34lajryfbzkhq0g372iib6h8mr74mq18xkarp5blgmsl"; depends=[CAMAN dplyr FDRreg Hmisc latexpdf Matrix mosaic pbapply pracma progress R_utils Rcpp REBayes Rmosek spatstat]; }; NPMVCP = derive2 { name="NPMVCP"; version="1.1"; sha256="13jpm46abwziq8859jhl6hg1znk3ws1q7g4vlr2jyri3qa6h22dd"; depends=[]; }; NPP = derive2 { name="NPP"; version="0.4.0"; sha256="1891s5j39i728vqs6xz1bywnvgalsbiknn3yqsg71zlhj3h8ikll"; depends=[]; }; - NPRED = derive2 { name="NPRED"; version="1.0.5"; sha256="0klzca0j9hswr586bp27r67s09n548yvgclfs5b64qdlhng7sf13"; depends=[]; }; + NPRED = derive2 { name="NPRED"; version="1.0.6"; sha256="1mdnjfh100hckyqkyq4651ymi6lzbgfy6dy4xjxbal2q5rn6swvl"; depends=[]; }; NPS = derive2 { name="NPS"; version="1.1"; sha256="02idja149a2sj97sks4lhsaflpifyxi6n0rjlcq9993f84szfgsi"; depends=[]; }; NPflow = derive2 { name="NPflow"; version="0.13.3"; sha256="1bgdkm82pmzjv46pkxpvh5ffffmc6q68x5jjl7k330w9vwgx2kf0"; depends=[ellipse fastcluster ggplot2 pheatmap Rcpp RcppArmadillo reshape2 truncnorm]; }; NRejections = derive2 { name="NRejections"; version="1.2.0"; sha256="0lzj7kyn4s8l306a6xwkgkv1z4dlfsr61i902lvdxv4ln4m6a5kq"; depends=[doParallel foreach matrixcalc mvtnorm StepwiseTest]; }; @@ -3189,6 +3203,7 @@ in with self; { NetCluster = derive2 { name="NetCluster"; version="0.2"; sha256="0aby8kfniw07jap795cwk69z83p45q5rap73zp1qbmkm3qcb31g4"; depends=[sna]; }; NetComp = derive2 { name="NetComp"; version="1.6"; sha256="11rxpdihn575diqfvc7yvxhlr2c19fig4v4a5c6jhqyfdsd60fsv"; depends=[gdata]; }; NetData = derive2 { name="NetData"; version="0.3"; sha256="1jf05zwy0c6gmm7kvxlwvai61bz4wpsw7cl0h4i21ipzn1rqxmqj"; depends=[]; }; + NetExplorer = derive2 { name="NetExplorer"; version="0.0.1"; sha256="11vsw0pmivypffrjll4vz9xy3hnhk5cym30f0b85jpjjp40qcp1p"; depends=[]; }; NetFACS = derive2 { name="NetFACS"; version="0.2.0"; sha256="0fz2whkhdz48knj31pgsq85n4n9zl52vnjmhg6ky34an3a2q459c"; depends=[arrangements doParallel ggplot2 ggraph igraph picante Rfast rlang]; }; NetIndices = derive2 { name="NetIndices"; version="1.4.4"; sha256="0ydivbri8l8zkxi18ghj9h66915scyhca8i9mcyq4b06mjfigss8"; depends=[MASS]; }; NetLogoR = derive2 { name="NetLogoR"; version="0.3.9"; sha256="035nsxgzh7dg9bjcwqbf5228ph90ff629di4ff3pdvr40jki60f1"; depends=[abind car CircStats data_table Hmisc matrixStats plyr quickPlot raster rgeos sp SpaDES_tools]; }; @@ -3237,7 +3252,7 @@ in with self; { NostalgiR = derive2 { name="NostalgiR"; version="1.0.2"; sha256="0rpvwi815sdhaxqpji1y6g0vy8mkn5k6wci0a4jf54pkywwkwrwp"; depends=[txtplot]; }; Nozzle_R1 = derive2 { name="Nozzle.R1"; version="1.1-1"; sha256="05sjip4sz12mwd3jcbvk342p83kdmrd4l2jrh17p18w4l7w4nn0z"; depends=[]; }; Numero = derive2 { name="Numero"; version="1.8.4"; sha256="0kkska60ilk3lqf5w6z21pjldipg4pky0qgzpbsl69ial62z8xsy"; depends=[Rcpp]; }; - NutrienTrackeR = derive2 { name="NutrienTrackeR"; version="1.1.0"; sha256="1xik2q229vkh34q211b6a1pij9fvcs0wik0ypl4j1jlfvl673rz8"; depends=[ggplot2 shiny]; }; + NutrienTrackeR = derive2 { name="NutrienTrackeR"; version="1.2.0"; sha256="0n54kgxcj8w3r3iqdr13kia49b9zgxiki64h90yygpbg32hqdn8b"; depends=[ggplot2 shiny]; }; OAIHarvester = derive2 { name="OAIHarvester"; version="0.3-3"; sha256="00j5f6kw67qr83cmds9y5rzwiv2sb2b2bfbr5cclpr3wcsw278fs"; depends=[curl xml2]; }; OBASpatial = derive2 { name="OBASpatial"; version="1.8"; sha256="1xc4qz3i5pphgf17asyiafdnlhv5k88rw0fwkwfh8cz767wip1hw"; depends=[cubature HDInterval invgamma LaplacesDemon modeest mvtnorm truncdist]; }; OBMbpkg = derive2 { name="OBMbpkg"; version="1.0.0"; sha256="01wch8wwij3fd0jambk0hpkhlnp4ryrq8qnnr2w1iad9zssjyii5"; depends=[]; }; @@ -3277,6 +3292,7 @@ in with self; { OSDR = derive2 { name="OSDR"; version="1.1.3"; sha256="059sj003zsrabmjfhwvvpi599ssrckcqpiw2b3vz405ljnhjmlap"; depends=[]; }; OSMscale = derive2 { name="OSMscale"; version="0.5.1"; sha256="0rjhyhh1iafgd9h1pbd2clyg2sh0gg7y1aqmiislqyn6h6jrvgqn"; depends=[berryFunctions OpenStreetMap sp]; }; OSNMTF = derive2 { name="OSNMTF"; version="0.1.0"; sha256="0g83wqh97iz3g4ganj2dy3biyn8cmb0v8zz6rydald1hfszj8aa2"; depends=[dplyr MASS]; }; + OSTE = derive2 { name="OSTE"; version="1.0"; sha256="0l8whr883g3jp5ckgxr4zf9vj055jrjb7pfraacd15smnrbl0v5d"; depends=[pec prodlim ranger survival]; }; OTE = derive2 { name="OTE"; version="1.0.1"; sha256="0jvvrrfhpc5kibbxrd5r4dj97jp5m072fxnkpcyz11gi65db3z4g"; depends=[randomForest]; }; OTRselect = derive2 { name="OTRselect"; version="1.0"; sha256="1bh14228yz552ngywjf1qyh1isqj4cgiy7n7d4zg8dpqwxr04ykp"; depends=[lars survival]; }; OTUtable = derive2 { name="OTUtable"; version="1.1.2"; sha256="1sm037ihm12xyp7ns5f0c1psflvm1aj3xnsj5nzh2rsjn35hvd6h"; depends=[]; }; @@ -3341,8 +3357,7 @@ in with self; { OrgMassSpecR = derive2 { name="OrgMassSpecR"; version="0.5-3"; sha256="1dx9d8rb1dfqyhyc26zhfnxiv3rz2ikvs2mwqnsrq3lsjs9dvyc8"; depends=[]; }; OrthoPanels = derive2 { name="OrthoPanels"; version="1.1-4"; sha256="112dvc1scv299rw1w30fw2jj4gz74b7sidcdzcba3mhn3k7aw0ja"; depends=[MASS]; }; OscillatorGenerator = derive2 { name="OscillatorGenerator"; version="0.1.0"; sha256="0zqw8l955msxkdviw5vd493749zwc22qby9mfmyqnqqmq0pyjw4w"; depends=[]; }; - Ostats = derive2 { name="Ostats"; version="0.1.0"; sha256="12gcw9rv43i61hciv4x2imhs216sdw8ln9pgh60j0ybfcgv87w0b"; depends=[circular ggplot2 gridExtra hypervolume MASS matrixStats sfsmisc viridis]; }; - OutlierDC = derive2 { name="OutlierDC"; version="0.3-0"; sha256="1vm3zx4qmj9l0ddfqbksm1qyqzzqrxf93gh4kj52h68zlsfxwv41"; depends=[Formula quantreg survival]; }; + Ostats = derive2 { name="Ostats"; version="0.1.1"; sha256="0jsxlxwf0fcqlbr12hyixfpp819g4sf0d2dnsx5jn6w81wwsdfiv"; depends=[circular ggplot2 gridExtra hypervolume MASS matrixStats sfsmisc viridis]; }; OutlierDM = derive2 { name="OutlierDM"; version="1.1.1"; sha256="0n8iq464ryc3v4wms7cdka39870w5pg29z9v8gmdsp4d9cfsx9v4"; depends=[MatrixModels outliers pcaPP quantreg]; }; OutliersO3 = derive2 { name="OutliersO3"; version="0.6.3"; sha256="165v572w9bnvay9f0xyxzbhgj1i86ndia4rzqy98i48dfdbdb990"; depends=[cellWise dplyr FastPCS forcats GGally ggplot2 HDoutliers memisc rlist robustbase robustX tidyr]; }; OutrankingTools = derive2 { name="OutrankingTools"; version="1.0"; sha256="0z7pslkkinn7flc4xwjg0bsfswf8ad4jv9rmglaj3fmjcx9b6wgj"; depends=[igraph]; }; @@ -3358,7 +3373,6 @@ in with self; { PAMhm = derive2 { name="PAMhm"; version="0.1.2"; sha256="0k0n3ni0ypcizri39v76x1vv7hlxlmbpfi7w81yxy9inz7zz4zfw"; depends=[cluster heatmapFlex plyr R_utils RColorBrewer readmoRe readxl robustHD]; }; PAMmisc = derive2 { name="PAMmisc"; version="1.7.0"; sha256="1ghhipx42g7s3aplk6c9qwsvr78dzl88czrmhavxfvv5vmdm9n02"; depends=[dplyr geosphere ggplot2 hoardr httr lubridate magrittr ncdf4 PamBinaries purrr RcppRoll rerddap RSQLite seewave stringr tuneR viridis viridisLite xml2]; }; PAMpal = derive2 { name="PAMpal"; version="0.14.4"; sha256="01fxypdsgshv1bkyqqkd68xnmyz3mcv2hhy2nzfvddfyly7ixys8"; depends=[data_table dplyr gam ggplot2 knitr lubridate magrittr manipulate PamBinaries PAMmisc purrr readr reticulate rjson rlang RSQLite rstudioapi seewave signal stringr tidyr tuneR xml2]; }; - PANDA = derive2 { name="PANDA"; version="0.9.9"; sha256="1sf3c49v4mb3mz2imqlqdbh1iab7bc2pxpi8bmgj2jld133555ip"; depends=[cluster GO_db]; }; PAS = derive2 { name="PAS"; version="1.2.5"; sha256="175p3bnpnhknfsc29hri0l2ipz1x6qcxs2bq7awns8lccam466r2"; depends=[glmnet]; }; PASSED = derive2 { name="PASSED"; version="1.1-1"; sha256="06dr5q14lyam6ywn6bg6vfkb68jqb6hw2phd10jcpdzcjvhsbz0r"; depends=[betareg rootSolve]; }; PASWR = derive2 { name="PASWR"; version="1.1"; sha256="1rxymnqvflypc6m62f5vw65l8x1m2yah7r11hhpmzdq2l2sg8fci"; depends=[e1071 lattice MASS]; }; @@ -3389,14 +3403,14 @@ in with self; { PCLassoReg = derive2 { name="PCLassoReg"; version="1.0.0"; sha256="1m79aiij4dglfz5qhm5h76hxpgszrpzfw37nvx2y6gcq6dya8krl"; depends=[grpreg survival]; }; PCMBase = derive2 { name="PCMBase"; version="1.2.12"; sha256="0p18g660yax8mmnhq1pd4nax4saf8syqj7c1xpspjbfkr78kh15q"; depends=[ape data_table expm ggplot2 mvtnorm xtable]; }; PCMBaseCpp = derive2 { name="PCMBaseCpp"; version="0.1.9"; sha256="0k40mxs8w1vk7qwpkv8gnq6cq3kpj7wvf0i6f1qn1wmm2vvz1kfy"; depends=[abind data_table PCMBase Rcpp RcppArmadillo]; }; - PCMRS = derive2 { name="PCMRS"; version="0.1-2"; sha256="1zr2kzwxgr7rifkkmgz9vhq5i9ky6lqrss742vybwl0nx78mad3p"; depends=[cubature ltm mvtnorm Rcpp RcppArmadillo statmod]; }; + PCMRS = derive2 { name="PCMRS"; version="0.1-3"; sha256="02dkszfaqkwksyf0wics4lldyqlwviw2mpc8kb04nhxnwh50vy1g"; depends=[cubature ltm mvtnorm Rcpp RcppArmadillo statmod]; }; PCPS = derive2 { name="PCPS"; version="1.0.7"; sha256="0gxymz0yws1q1bxkpxi0lmbv57xx62h3dl7z3i2cnbagswkax3zh"; depends=[ape nlme phylobase picante RcppArmadillo SYNCSA vegan]; }; PCRedux = derive2 { name="PCRedux"; version="1.1"; sha256="0714q5afki3i8vja3qakzjx7r082m99zhsimzlsqjhq4fa3jb8q2"; depends=[bcp changepoint chipPCR ecp fda_usc MBmca pbapply pracma qpcR robustbase segmented shiny zoo]; }; PCS = derive2 { name="PCS"; version="1.2"; sha256="0488h6s1yz6fwiqf88z2vgckn6i0kwls8cazmpw3wspnaqvl2n4s"; depends=[multtest statmod]; }; PCSinR = derive2 { name="PCSinR"; version="0.1.0"; sha256="1z8yjryw3c43vc6fxcwiindmyq6r63pc1zr3aybwmys6mv697bb4"; depends=[]; }; PCovR = derive2 { name="PCovR"; version="2.7.1"; sha256="1lvj3kf4pnvbr7lk3kzvh72akga49zx25b3w7nq24925s129sqx1"; depends=[GPArotation MASS Matrix ThreeWay]; }; PDE = derive2 { name="PDE"; version="1.3.0"; sha256="1nz0xrhs2iin2grqvxhp99775q8wrjp7isyr1i415vi936jabs0i"; depends=[tcltk2]; }; - PDFEstimator = derive2 { name="PDFEstimator"; version="3.0"; sha256="0qkxnvbxvl7hfr08r9mj0hqqd0fr099h3gf1kf4czn98h1s2lc0y"; depends=[]; }; + PDFEstimator = derive2 { name="PDFEstimator"; version="3.1"; sha256="0l9iq7jr266f44laxbhj23ngp5m4fimhxmr4nszajr0j3w14wmrl"; depends=[]; }; PDM = derive2 { name="PDM"; version="0.1"; sha256="1pbdy13ji9c6krgh2r1qgrzmf4hdmrdzylsr71n3hh5jq4n9xg8x"; depends=[jpeg]; }; PDN = derive2 { name="PDN"; version="0.1.0"; sha256="082ydvwcjc2rs7hlakrkgbbm9c419m408a14a9dgfdwm16yif3jd"; depends=[ggplot2 glmnet network survival]; }; PDQutils = derive2 { name="PDQutils"; version="0.1.6"; sha256="0mmfi0ifwbkjm0274sddpwkj27cvdkwngnka8vdmfm4b2nn7vgsp"; depends=[moments orthopolynom]; }; @@ -3408,6 +3422,7 @@ in with self; { PELVIS = derive2 { name="PELVIS"; version="2.0.3"; sha256="1sym6lbspzqcmg0k0r07kv65pswq39fxx5xdyiv6pm2r3v49p8jq"; depends=[DT htmlwidgets MASS shiny]; }; PEMM = derive2 { name="PEMM"; version="1.0"; sha256="18dd9hsbdrnhrrff7gpdqrw2jv44j8lg0v3lkcdpbd4pppcaq84h"; depends=[]; }; PERMANOVA = derive2 { name="PERMANOVA"; version="0.2.0"; sha256="1lmnp1g1i1kqa30cvakkl8g2m2h5jl73qx8dy37kv62mv0knlg5m"; depends=[deldir MASS Matrix scales xtable]; }; + PEkit = derive2 { name="PEkit"; version="1.0.0.1000"; sha256="023k4swypw8l4hglqxysd53c5f4fq9v3ibha9jm5kvyg3piw3a4p"; depends=[]; }; PGEE = derive2 { name="PGEE"; version="1.5"; sha256="1qcxbqnbpplnfjy83nm9fj9y4abzgbxnsggzx7ix3vb9qs18cdwh"; depends=[MASS mvtnorm]; }; PGM2 = derive2 { name="PGM2"; version="1.0-1"; sha256="03282pcq7gw47awc2mxjsbz6w3zpqjhqd7fzg8la4p00cd0vvmr4"; depends=[]; }; PGRdup = derive2 { name="PGRdup"; version="0.2.3.7"; sha256="0zm0cm98nps2bfr66mb4j7a0v3s407zqrl2l2nvzg9yyqlaznzc3"; depends=[data_table ggplot2 gridExtra igraph stringdist stringi]; }; @@ -3429,7 +3444,7 @@ in with self; { PKPDmodels = derive2 { name="PKPDmodels"; version="0.3.2"; sha256="1h893civ77ahbgjnc6kq3l7rszmqmx9dlxwavldigpq3r79vd86k"; depends=[]; }; PKconverter = derive2 { name="PKconverter"; version="1.5"; sha256="1zk2sjrjhq7n2k2p29r2qc6qdghr3riyjvvawz0g74lidg7hm1ly"; depends=[shiny shinydashboard shinythemes]; }; PKreport = derive2 { name="PKreport"; version="1.5"; sha256="16hss9migbxpnw5f9gcw1nlvb81iyji00ylx5wd6kdwhz0ids9wj"; depends=[ggplot2 lattice]; }; - PL94171 = derive2 { name="PL94171"; version="0.3.2"; sha256="07mskfg3a6h60abhiayk88qjlw3ixfa8fmmgamwax42y82hy8dci"; depends=[dplyr httr readr sf stringr tigris withr]; }; + PL94171 = derive2 { name="PL94171"; version="1.0.1"; sha256="0x7lymy8fg5r3w21an6ihrnrhsicnl4q382gx7pij9vlb82cy763"; depends=[dplyr httr readr sf stringr tigris withr]; }; PLFD = derive2 { name="PLFD"; version="0.1.1"; sha256="0zzvrhjv7jxil326sqp0xmna0lc708wx1wv33qf0jf1ggr4hhqqm"; depends=[mathjaxr Rcpp RcppArmadillo]; }; PLIS = derive2 { name="PLIS"; version="1.1"; sha256="0b81s7677wglqvv1b5lx8k2iaks09kz0wrl07245a7j2pk9nxv7p"; depends=[]; }; PLMIX = derive2 { name="PLMIX"; version="2.1.1"; sha256="05mnzsi7y71cvg50qx8hp4m31gqslldl34k41r1f8npyb6ldpdca"; depends=[abind coda foreach ggmcmc ggplot2 gridExtra gtools label_switching MCMCpack PlackettLuce pmr prefmod radarchart rankdist rcdd Rcpp reshape2 StatRank]; }; @@ -3452,7 +3467,7 @@ in with self; { POINT = derive2 { name="POINT"; version="1.1"; sha256="0bkrsvcmm7927d7c56wr804a2wv5c1dn8y8zhf76433ckj45068x"; depends=[CompQuadForm Matrix rARPACK]; }; POMaSPU = derive2 { name="POMaSPU"; version="1.0.0"; sha256="0jz3jgzdykv0xvfw3ix0hbs32as6dp7p5v8bj5nddknx10d0siya"; depends=[MASS matrixStats Rcpp RcppArmadillo]; }; POSTm = derive2 { name="POSTm"; version="1.1"; sha256="0ax0ky2xbaymw4fdipxvy1gh5wfnnm8hwxcg6hksasaz366widhm"; depends=[ape CompQuadForm]; }; - POSetR = derive2 { name="POSetR"; version="1.0.3"; sha256="19r73q7g8jxlq05lrc1mhd0qb1cw7hppsnz6f3410p5wwmvvvaxp"; depends=[igraph Rcpp Rdpack]; }; + POSetR = derive2 { name="POSetR"; version="1.0.4"; sha256="1fxs741rb4x9b92c1x5i1ngxwaa0r5j2x1x5i4k3y71x67pklmf8"; depends=[igraph Rcpp Rdpack]; }; POT = derive2 { name="POT"; version="1.1-7"; sha256="1xxm293lmj22dsiaimivpd90xpwnrr36xa371zg6k6w05q4jjfn3"; depends=[]; }; POUMM = derive2 { name="POUMM"; version="2.1.7"; sha256="0pwa97sffb571nfqnbc35dj9lr8z07wjsjnwibj9dhj2dr5b2cfp"; depends=[adaptMCMC ape coda data_table foreach ggplot2 lamW Rcpp]; }; POV = derive2 { name="POV"; version="0.1.4"; sha256="0mqhi410rwpgr6x5h57wqg0f5k01vva0c280zlfpmf8php121x7j"; depends=[broom formula_tools]; }; @@ -3482,7 +3497,7 @@ in with self; { PROreg = derive2 { name="PROreg"; version="1.1"; sha256="0jws41hgrpcih5ispp6f627f81sjbdygzgjbw4gawf31n5z8pi5a"; depends=[car fmsb Matrix matrixcalc numDeriv RColorBrewer rootSolve]; }; PROscorer = derive2 { name="PROscorer"; version="0.0.1"; sha256="0mgj0mi0vzdk0agimsx4k9i4bss0j5lqiayzhldr1hrqrx2a4f3d"; depends=[PROscorerTools]; }; PROscorerTools = derive2 { name="PROscorerTools"; version="0.0.1"; sha256="1vliffkfqdn5l96bncfgayv19i20kmawlxi8q853wamj6npdpv5r"; depends=[]; }; - PROsetta = derive2 { name="PROsetta"; version="0.3.2"; sha256="148kylibzzqcryrrfxkybpyb4bpywdjdg9lvxar7b2qhwfb5ff1b"; depends=[equate lavaan mirt mvnfast plink psych]; }; + PROsetta = derive2 { name="PROsetta"; version="0.3.4"; sha256="00wrb92hcsp27jmidp0r3m6kh110wsabbjxi3hs9zr70kydjjwrf"; depends=[equate lavaan mirt mvnfast plink psych]; }; PRROC = derive2 { name="PRROC"; version="1.3.1"; sha256="1m28h8pcd78049lz2qixhkcr9h5b3jik3maqzfbvq9y58z71i4a7"; depends=[]; }; PRSim = derive2 { name="PRSim"; version="1.3-1"; sha256="1iq81vdxwd504cqjn243hs8x8ph7yvf06gj4amf7cgg1j6862d35"; depends=[goftest homtest lmomco mev splus2R wavScalogram]; }; PReMiuM = derive2 { name="PReMiuM"; version="3.2.7"; sha256="108ijvhs48i0sphqvpkxa3bwcsak7098irz5x82zja42h9bz5hwf"; depends=[BH cluster data_table gamlss_dist ggplot2 plotrix Rcpp RcppEigen rgdal spdep]; }; @@ -3510,7 +3525,7 @@ in with self; { PVplr = derive2 { name="PVplr"; version="0.1.0"; sha256="1ssmdhq2qczk6n50f8jj4j3nym7jj9bshfc1f29lccvmp7wxdp9a"; depends=[broom cluster dplyr ggplot2 magrittr minpack_lm purrr rlang segmented stlplus tidyr]; }; PWD = derive2 { name="PWD"; version="1.0"; sha256="0ksr3biaqd4p5a4lv28i4cwk1fn9822ndq2161mgvc1c344p06fj"; depends=[Rcpp RcppArmadillo]; }; PWEALL = derive2 { name="PWEALL"; version="1.3.0"; sha256="0nb0v6wvj9ay90qcbrr9drg2g84fb7a9m78pzb69wp8789i8ixhk"; depends=[survival]; }; - PWFSLSmoke = derive2 { name="PWFSLSmoke"; version="1.2.111"; sha256="0gry7nq8gqxfspihsc05pcwn25fciw41hjy9bnd1bsqqk5f520d0"; depends=[cluster curl dplyr dygraphs geosphere ggmap glue httr jsonlite leaflet lubridate magrittr mapproj maps maptools MazamaCoreUtils MazamaSpatialUtils openair png purrr raster RColorBrewer readr reshape2 rgdal RgoogleMaps rlang sf slippymath sp stringr tibble tidyr xts]; }; + PWFSLSmoke = derive2 { name="PWFSLSmoke"; version="1.2.117"; sha256="0140j2bg6mqxsg86ndq3c0ls1kdvd33r2qrwih2cjgmnfq31adkj"; depends=[cluster curl dplyr dygraphs geosphere ggmap glue httr jsonlite leaflet lubridate magrittr mapproj maps maptools MazamaCoreUtils MazamaSpatialUtils openair png purrr raster RColorBrewer readr reshape2 rgdal RgoogleMaps rlang sf slippymath sp stringr tibble tidyr xts]; }; PabonLasso = derive2 { name="PabonLasso"; version="1.0"; sha256="158xg9i13nqy1bnpch8r6a7yas01hsdidmcypgccmyh7d7l52mr1"; depends=[]; }; Pade = derive2 { name="Pade"; version="1.0.3"; sha256="0q4pk2qk7v9wn5sdlvrwn9ir01jxy9nlzygnwkjzhq5vfa720d1k"; depends=[]; }; PairViz = derive2 { name="PairViz"; version="1.3.4"; sha256="1jd99b4bc2yiv91z7szhrgqhrbh6h6qwacvwf1cl6r8nrv5kqd13"; depends=[graph gtools TSP]; }; @@ -3648,7 +3663,7 @@ in with self; { PosteriorBootstrap = derive2 { name="PosteriorBootstrap"; version="0.1.1"; sha256="12ial0bcrh3k3z5927zh0bvd413jrz606b07jgbym87kb3n1fxbi"; depends=[dplyr e1071 ggplot2 gridExtra MASS Rcpp rstan StanHeaders tibble]; }; PottsUtils = derive2 { name="PottsUtils"; version="0.3-3"; sha256="165k4sjh3kqkb8bzi68wx00yl77yfbgs70fcbpzmsmcw4g4hdpzn"; depends=[miscF]; }; PoweR = derive2 { name="PoweR"; version="1.0.7"; sha256="040wc7hxa8y6bm1rs7ip2skdxmmwksxkyb6xzqgdjp8m7a25fppb"; depends=[Rcpp RcppArmadillo]; }; - Power2Stage = derive2 { name="Power2Stage"; version="0.5-3"; sha256="0fs6hkpfivc98dxnlmxqaxsr3bxvfqawjnwyw0qvans8m4wcq1kx"; depends=[cubature mvtnorm PowerTOST]; }; + Power2Stage = derive2 { name="Power2Stage"; version="0.5-4"; sha256="1g4zrprbd5q1dn4jfq5c9ayss4p0ljhbsfr3h8h9sjbmcg62rsal"; depends=[cubature mvtnorm PowerTOST]; }; PowerNormal = derive2 { name="PowerNormal"; version="1.2.0"; sha256="1kryqcjvgwk0l4z3gqxdiz47mha3jw5583jlb9z7ml6v7cam06sm"; depends=[]; }; PowerTOST = derive2 { name="PowerTOST"; version="1.5-3"; sha256="0473vm267hsq7s8ggm4m01jig067qcpm30cza0j1kx9cw6ghq68d"; depends=[cubature mvtnorm TeachingDemos]; }; PowerUpR = derive2 { name="PowerUpR"; version="1.1.0"; sha256="0bnkngdqhzhsbkzp4cxhgm8rzn83q4vm3fj2gkp7z4qznp37lh3j"; depends=[]; }; @@ -3665,7 +3680,7 @@ in with self; { PresenceAbsence = derive2 { name="PresenceAbsence"; version="1.1.9"; sha256="17qn4ggkr5aqml45nkihj1j35y479ywkm1xcfkb2g8ky66jb0c0s"; depends=[]; }; PressPurt = derive2 { name="PressPurt"; version="1.0.2"; sha256="05kca0rlhlvhgnw3r3p4sh42zwvhrhcjdwz65ykp14jxybfhc8in"; depends=[data_table ggplot2 gridExtra reticulate]; }; PrevMap = derive2 { name="PrevMap"; version="1.5.4"; sha256="12cw4dmbsnx9c4y5l5k0paqn1wwbxy9ciw46r254n5rd275fhksh"; depends=[lme4 Matrix maxLik numDeriv pdist raster splancs truncnorm]; }; - PriceIndices = derive2 { name="PriceIndices"; version="0.0.5"; sha256="0ymvdcn7ijw015rb4ljx6q608fzk87z38k8qqgc30839i79vy7wi"; depends=[caret dplyr ggplot2 lubridate reclin reshape strex stringr xgboost]; }; + PriceIndices = derive2 { name="PriceIndices"; version="0.0.6"; sha256="18ci20z07xx7q1mr007hwn2sx65fmvli9w23brgvbpa1wyhh3lhg"; depends=[caret dplyr ggplot2 lubridate reclin reshape strex stringr xgboost]; }; PriorCD = derive2 { name="PriorCD"; version="0.1.0"; sha256="1mb50w2i8sfxjzqd5xnfysn3jnzkkyv6l8algxnp0xpyhcq41pfs"; depends=[dplyr igraph ROCR visNetwork]; }; PriorGen = derive2 { name="PriorGen"; version="1.1.2"; sha256="0qvdqqdy7wdwwcq95mkgfyf7xf6xlpwdfs3gq299yyv2ba57flnm"; depends=[rootSolve]; }; PrivateLR = derive2 { name="PrivateLR"; version="1.2-22"; sha256="0d142fa3wk7yadvs8jszajs6hq9m03p0j6h5r4pbw7j0d1l72hgc"; depends=[]; }; @@ -3751,6 +3766,7 @@ in with self; { QTLRel = derive2 { name="QTLRel"; version="1.6"; sha256="1198qrrl7samm4jzliy5i8wfvladz6wpm48l1g2x6ackm1asiw75"; depends=[gdata lattice]; }; QTOCen = derive2 { name="QTOCen"; version="0.1.1"; sha256="0wlbxk1rd56k02jf3pfzbx6xx5mmf6sb7gvds0067cvb7m42ghcr"; depends=[MatrixModels quantreg Rdpack rgenoud survival]; }; QUALYPSO = derive2 { name="QUALYPSO"; version="1.2"; sha256="0hp99hhlv7rijn34ncshpvbnmhbx3f5km7bzr0z7yr7l3j1vx3sc"; depends=[doParallel expm foreach MASS Rfast]; }; + QWDAP = derive2 { name="QWDAP"; version="1.1.7"; sha256="19dvdfchk19mm41910g2m34xn3agbxymcsa8gjc4fxc5pikyc8rf"; depends=[CORElearn MTS pls progress StepReg]; }; Qapprox = derive2 { name="Qapprox"; version="0.2.0"; sha256="0mv3xfy847lqh95mpccjiw5jjbml7dwrna7i16532sdqcxaq4m02"; depends=[]; }; Qtools = derive2 { name="Qtools"; version="1.5.5"; sha256="0kmd5cd299gjw5qbk8yhlzxcwa3ykrr36zcpk773mykyz57q46hb"; depends=[boot glmx gtools MASS Matrix np numDeriv quantreg Rcpp RcppArmadillo]; }; QuACN = derive2 { name="QuACN"; version="1.8.0"; sha256="1597blp8gqc5djvbgpfzi8wamvy0x50wh5amxj9cy99qa0jlglxi"; depends=[combinat graph igraph RBGL]; }; @@ -3818,19 +3834,20 @@ in with self; { RAP = derive2 { name="RAP"; version="1.1"; sha256="18dclijs72p6gxawpg8hk7n512ah4by5jfg2jnrp8mz79ajmdgir"; depends=[]; }; RAPIDR = derive2 { name="RAPIDR"; version="0.1.1"; sha256="14cnw4jjs5anb55zlg1yj6qc9yr51rsamigq2q7h8ypj2ggnna1d"; depends=[Biostrings data_table GenomicAlignments GenomicRanges PropCIs Rsamtools]; }; RAPTOR = derive2 { name="RAPTOR"; version="1.0.1"; sha256="1bj3xsl83mb8zwap8icywrfdld382fram79b0n14jbk1l87rj9r4"; depends=[mgcv]; }; - RAQSAPI = derive2 { name="RAQSAPI"; version="2.0.1"; sha256="0dz81fkxjk85n9c9kabibyr0c7bg6widamnnvld135q3w1nridfc"; depends=[dplyr glue gtools httr jsonlite lifecycle lubridate magrittr purrr rlang stringr tibble]; }; + RAQSAPI = derive2 { name="RAQSAPI"; version="2.0.2"; sha256="0325s4b62a1kpq8r4bcxa0njbih71aywbvpzxf0w0qsrbrk4wdq7"; depends=[dplyr glue gtools httr jsonlite lifecycle lubridate magrittr purrr rlang stringr tibble]; }; RATest = derive2 { name="RATest"; version="0.1.9"; sha256="02673wbss90c192rxbzxfsbnirl63k7d8fq989chmjc5z2xjzajj"; depends=[ggplot2 gridExtra quantreg]; }; RAdwords = derive2 { name="RAdwords"; version="0.1.18"; sha256="1c3m2j2cf1s51p783rdng5ns913bv7rbjc1vpmrmsxg2kf5f6qyq"; depends=[RCurl rjson]; }; RApiDatetime = derive2 { name="RApiDatetime"; version="0.0.6"; sha256="15j6vb6rm4ykwjachqyyfvjshiilyjqnpj8x6qc93savk04rf279"; depends=[]; }; RApiSerialize = derive2 { name="RApiSerialize"; version="0.1.0"; sha256="0gm2j8kh40imhncwwx1sx9kmraaxcxycvgwls53lcyy2ap344k9j"; depends=[]; }; RAppArmor = derive2 { name="RAppArmor"; version="3.2.2"; sha256="0l0f4k666nh00db94sjxz60anr4l9vm0259pcc2a4whk2pmjcq5n"; depends=[unix]; }; - RAthena = derive2 { name="RAthena"; version="2.3.0"; sha256="1yfh40g9i6974a4zma94k8d3q4gbjfxr6h0agxd4zk5bs5ld50ja"; depends=[data_table DBI reticulate uuid]; }; + RAthena = derive2 { name="RAthena"; version="2.4.0"; sha256="10zg9df5n9il6w7088l6kkzd4g9clvc98l5cppci41vn6smsswr4"; depends=[data_table DBI reticulate uuid]; }; RBF = derive2 { name="RBF"; version="2.1.0"; sha256="0062ckvrjfkkl5lfrshrr2cynrxsrp4zpdpl8nij06hm00i3gfs5"; depends=[]; }; RBMRB = derive2 { name="RBMRB"; version="2.1.7"; sha256="09x7zaigflc0d3pbdrvfv1kdklrlzgd4v2ma3dcr96l36n1iqqns"; depends=[data_table ggplot2 httr plotly rjson]; }; RBNZ = derive2 { name="RBNZ"; version="1.1.0"; sha256="11fdnc2pmw5nq3lswid078l307ln6853a3b9d383msvrkz6yms26"; depends=[httr lubridate readxl rvest xml2]; }; RBPcurve = derive2 { name="RBPcurve"; version="1.2"; sha256="0zkfvnhm780vid4qqdrx9mnc6jxxrmrnq47pqvk35rm3m4l96782"; depends=[BBmisc checkmate mlr shape TeachingDemos]; }; RBaseX = derive2 { name="RBaseX"; version="0.3.0"; sha256="15hn04ijvqbza8brca7g06yi621hyf3gjgkfvf1wp4jgzysgd8ww"; depends=[data_table dplyr magrittr openssl R6 RCurl stringr tibble]; }; - RBesT = derive2 { name="RBesT"; version="1.6-2"; sha256="1iyw87hp37l67zi4bv9npyp431358d3j5m6j4gxyz1j3k9l9g4x9"; depends=[assertthat bayesplot BH checkmate dplyr Formula ggplot2 mvtnorm Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; + RBesT = derive2 { name="RBesT"; version="1.6-3"; sha256="0nbqkxsi6di4sd26l9c212sjs2lsvnabwbnf0cx00hmxrxzy0lhl"; depends=[assertthat bayesplot BH checkmate dplyr Formula ggplot2 mvtnorm Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; + RBestMatch = derive2 { name="RBestMatch"; version="0.1.0"; sha256="1jjap8xh71vx0jjpq0hl3m70adipq8jlsvhk078ajpxa2qhif7gi"; depends=[DiPs mvnfast plyr]; }; RBitmoji = derive2 { name="RBitmoji"; version="0.0.2"; sha256="1v9qj3vmqsvnccsy735nbflmd81183h2flm0f1ckd4kl08r2fr3f"; depends=[getPass httr jsonlite png RCurl]; }; RBtest = derive2 { name="RBtest"; version="1.1"; sha256="09da721zfj6cw4i9gifn5f0sv3nj0qfjb96c5w9g9gzx55ihssnk"; depends=[mice nnet psych]; }; RCA = derive2 { name="RCA"; version="2.0"; sha256="0pidb5czrf0dc3ywy6cwm5akgsc62pvf94kfyxibzmd1favykx1h"; depends=[gplots igraph]; }; @@ -3844,7 +3861,6 @@ in with self; { RCPmod = derive2 { name="RCPmod"; version="2.190"; sha256="1r24g8fcizyqzgp0da90sxpwalgcsgz2b168j2smpylxraiqb037"; depends=[fishMod glmnet gtools MASS]; }; RCRnorm = derive2 { name="RCRnorm"; version="0.0.2"; sha256="1mz1jb7mc9c47hbk9flnddny4zir6r2k5qis30iynwqny521l6ln"; depends=[truncnorm]; }; RCSF = derive2 { name="RCSF"; version="1.0.2"; sha256="1hjl7qsdgcddn3nh2likndhfhnw9gj3453xqq96gddgb1y0m3bh1"; depends=[Rcpp]; }; - RCSL = derive2 { name="RCSL"; version="0.99.95"; sha256="1ngzbhrc74ljhidsf7a17k4hyx0igv2srgbf822gm2wawzsmp0y2"; depends=[ggplot2 igraph mclust NbClust pracma RcppAnnoy Rtsne SingleCellExperiment umap]; }; RCT = derive2 { name="RCT"; version="1.1.1"; sha256="01ir440zgxjvzwn5vazxib0w14nqy7lk7glwvba39xqghb3xw85z"; depends=[broom dplyr forcats ggplot2 glue lfe magrittr MASS pracma purrr rlang stringr tidyr tidyselect]; }; RCarb = derive2 { name="RCarb"; version="0.1.4"; sha256="0mlas45ypwdkk6gr35fhsrjgn8am06ikh123drmky1yj1kkg6p76"; depends=[interp matrixStats]; }; RCassandra = derive2 { name="RCassandra"; version="0.1-3"; sha256="0xa241s81cyw6lfjb522f2mlyrd0gav9yz3z5jab9hpdpgg9ri38"; depends=[]; }; @@ -3860,7 +3876,6 @@ in with self; { RCriteo = derive2 { name="RCriteo"; version="1.0.2"; sha256="1vyhnblw9zr5h6c25lf76p9vn95k8vr0hpq1sjkccdwl9yvsyhfy"; depends=[httr plyr RCurl XML]; }; RCurl = derive2 { name="RCurl"; version="1.98-1.5"; sha256="13b9vlvknxlcmqgaaxb33srvyshsh59zmdsz4pfgz24i0fd7q63k"; depends=[bitops]; }; RCytoGPS = derive2 { name="RCytoGPS"; version="1.2.1"; sha256="1ppxyrm9h09kk6lnr6yg3n3xl08l9zp4rqliz92k5h42hmgj6f02"; depends=[rjson]; }; - RCzechia = derive2 { name="RCzechia"; version="1.8.3"; sha256="025fv6dh1q6g13wmi2q7czgm30d6j9v56ihp8cvag6yqxq60l08x"; depends=[curl httr jsonlite magrittr sf]; }; RDIDQ = derive2 { name="RDIDQ"; version="1.0"; sha256="09gincmxv20srh4h82ld1ifwncaibic9b30i56zhy0w35353pxm2"; depends=[]; }; RDML = derive2 { name="RDML"; version="1.0"; sha256="13ly1p42njbcygwvkyii8sjqbsywjy5w5g1kd7m8kswi5dsk3qqv"; depends=[checkmate data_table lubridate pipeR R6 readxl rlist stringr xml2]; }; RDP = derive2 { name="RDP"; version="0.2.0"; sha256="045jkjzhwsbml95l3spwd2f187pl1rgkaig74v3z97f75mg6ga3d"; depends=[Rcpp]; }; @@ -3891,7 +3906,7 @@ in with self; { REddyProc = derive2 { name="REddyProc"; version="1.3.0"; sha256="0n2izw1lq6wbygzv0rqc36yqb53hgspiz66wbn9b6f6c81vkbqhw"; depends=[bigleaf dplyr magrittr mlegp purrr Rcpp readr rlang solartime tibble]; }; REddyProcNCDF = derive2 { name="REddyProcNCDF"; version="1.1.4"; sha256="099f4mzqj7pjlrs8rdjg44mjm0058x3pj2imrfvk892hmlk4r53p"; depends=[REddyProc]; }; REndo = derive2 { name="REndo"; version="2.4.3"; sha256="1h7ycxwklb9dbb8q0g9cagjl93jhbjc86l25s1imdp1rqfsv8i6c"; depends=[AER corpcor data_table Formula lme4 lmtest Matrix mvtnorm optimx Rcpp RcppEigen]; }; - RFCCA = derive2 { name="RFCCA"; version="1.0.6"; sha256="1sh5dabcdjjb3a7h35q080abrw3cpav9jd6l28kn2xdr1f2qssnc"; depends=[CCA PMA]; }; + RFCCA = derive2 { name="RFCCA"; version="1.0.7"; sha256="0v0himz0zz6f52vvc5h33qiij0101zgihzwak8cw5193xzsfmr4g"; depends=[CCA PMA]; }; RFGLS = derive2 { name="RFGLS"; version="1.1"; sha256="13ggxj74h5b2hfhjyc50ndxznkvlg18j80m78hkzwh25d3948fsk"; depends=[bdsmatrix Matrix]; }; RFLPtools = derive2 { name="RFLPtools"; version="1.9"; sha256="0vcxlvfhm6sksjs7zx45jss31310fvglzaj948j49xhf08rik0iz"; depends=[RColorBrewer]; }; RFOC = derive2 { name="RFOC"; version="3.4-6"; sha256="0cs5wmpvrlag9aisbfiwkvwcb3skv5z4sawl30krmsq49mzj7yhd"; depends=[GEOmap MASS RPMG RSEIS splancs]; }; @@ -3955,7 +3970,7 @@ in with self; { RKEAjars = derive2 { name="RKEAjars"; version="5.0-4"; sha256="1j4643xc8k3zy4rv0h8dd154jafihnjr43wzz3d93j11g2w9xhq3"; depends=[rJava]; }; RKEEL = derive2 { name="RKEEL"; version="1.3.3"; sha256="1m9jxi7nwkjaq172rx28fk73i144bny2h4aliqkvg2ffsdjyi685"; depends=[arules doParallel foreach gdata Matrix pmml R6 rJava RKEELdata RKEELjars XML]; }; RKEELdata = derive2 { name="RKEELdata"; version="1.0.5"; sha256="1swzqw6j006ya48ahg6n1g8faxhqiv9v5q1zrnihpzj6868lf7y3"; depends=[]; }; - RKEELjars = derive2 { name="RKEELjars"; version="1.0.19"; sha256="1a879b0xq5jk7r2pf4n41nm0c4himl4yqw083xh2ha4qdhab5kq0"; depends=[downloader]; }; + RKEELjars = derive2 { name="RKEELjars"; version="1.0.20"; sha256="1wsxn9l7xdmm9q3z9lbbkdcnwsfmcrayg08m4mkbwynii5z9x548"; depends=[downloader]; }; RKHSMetaMod = derive2 { name="RKHSMetaMod"; version="1.1"; sha256="1h8gqqfmlrzyj4n997yn13vqpaw2kwzl45gscy3fdhskzmyg0ss3"; depends=[Rcpp RcppEigen RcppGSL]; }; RKUM = derive2 { name="RKUM"; version="0.1.1"; sha256="1w0v6l61dm7xixnyywsc7xziixz7k9r1ja26zcy77nry5kn6v60q"; depends=[]; }; RKelly = derive2 { name="RKelly"; version="1.0"; sha256="0mkpc95j67rg2gcj2fc4w8kv4v31cpiyvh660y8kc2fjr5q4aj3l"; depends=[]; }; @@ -4015,7 +4030,7 @@ in with self; { ROCaggregator = derive2 { name="ROCaggregator"; version="1.0.1"; sha256="1l53z1xz5ww0bdd3pcmscmm4ypg0fdl4a03vv8ya2jk0zzlndlnq"; depends=[magrittr]; }; ROCit = derive2 { name="ROCit"; version="2.1.1"; sha256="0sd6ckh7k8aqwhzzp3qff6g7d03klbr0mbp403pib3823c8pqa55"; depends=[]; }; ROCket = derive2 { name="ROCket"; version="1.0.1"; sha256="1p5b1408fdq8z64b7ihwcdxprg5rfiq4z5annxzvmizzr6qwn8qa"; depends=[data_table]; }; - ROCnReg = derive2 { name="ROCnReg"; version="1.0-5"; sha256="1j8q2za0mia8z1f3n71f9k4q2c1pkjqss5279ryawfzq6zy347k0"; depends=[lattice MASS Matrix moments nor1mix np pbivnorm spatstat spatstat_geom]; }; + ROCnReg = derive2 { name="ROCnReg"; version="1.0-6"; sha256="0qsyx65db626fig5sdj2qch8cyx5h1d1kl81y5zfpfc1407gq4pz"; depends=[lattice MASS Matrix moments nor1mix np pbivnorm spatstat spatstat_geom]; }; ROCpsych = derive2 { name="ROCpsych"; version="1.3"; sha256="0fcrhhxmvrrchbswb94liahbgz5pfhs86fbj0vby7vnakrhngh7v"; depends=[pROC reportROC]; }; RODBC = derive2 { name="RODBC"; version="1.3-19"; sha256="1zjf5mfv906kxy4cn2l10z35l7m5878aqjx9yj6pr2ydfxlbvz1s"; depends=[]; }; RODBCDBI = derive2 { name="RODBCDBI"; version="0.1.1"; sha256="0jkcc1lm8drsx1pkfj5h6rlbr98cgpvbf9ndzdwr048f3s8gd26i"; depends=[DBI RODBC]; }; @@ -4119,7 +4134,7 @@ in with self; { RSeed = derive2 { name="RSeed"; version="0.1.60"; sha256="0rvb6w4z5c2wcdgx5w6vv7c8il8d0096pgv3fyvw21ag25z605jc"; depends=[graph RBGL sybil]; }; RSelenium = derive2 { name="RSelenium"; version="1.7.7"; sha256="1xn5fdbzmq7b1f5fc9ls23g177bmnd8bn4p4d8aafr6z3jwkmfir"; depends=[binman caTools httr openssl wdman XML]; }; RSentiment = derive2 { name="RSentiment"; version="2.2.2"; sha256="15d1llzxg1apkwykpb7pic2d5lfj9i9a55hab067wrz2yq5jsyfa"; depends=[NLP openNLP plyr stringr]; }; - RSiena = derive2 { name="RSiena"; version="1.3.0"; sha256="1iar7dsy0qwscvb28yrzj864sjbqjn74s4byw1di1qh01iag4f60"; depends=[lattice MASS Matrix xtable]; }; + RSiena = derive2 { name="RSiena"; version="1.3.0.1"; sha256="0l6jh0nfsjrrqwrcrzsdl6adf485jf47bgly9smrvk1658z04m05"; depends=[lattice MASS Matrix xtable]; }; RSiteCatalyst = derive2 { name="RSiteCatalyst"; version="1.4.16"; sha256="1plcmxj6sahdy3vvcmxry8cbq1j23bqzhnhn593bkwmzczka24cy"; depends=[base64enc digest httr jsonlite plyr stringr]; }; RSizeBiased = derive2 { name="RSizeBiased"; version="0.1.0"; sha256="0qh1f9998c62cph590mszbwh12mpbvcnvffmxw4mib6wd4dgl723"; depends=[pracma]; }; RSmallTelescopes = derive2 { name="RSmallTelescopes"; version="1.0.4"; sha256="16c0pfq9qp0c9b7aljp753iilk3dys14h77anwps8xg7j2lizvbh"; depends=[]; }; @@ -4164,7 +4179,7 @@ in with self; { RWBP = derive2 { name="RWBP"; version="1.0"; sha256="104vr2cdk185hh4zn3vmqvb14p1q8ifk11wdgvk7fli1m1zxxwdd"; depends=[igraph lsa RANN SnowballC]; }; RWDataPlyr = derive2 { name="RWDataPlyr"; version="0.6.4"; sha256="1jjra885339n6kpqz28rn9byy4md4s0k47m6ll4a6srd4hsf3ni3"; depends=[data_table dplyr feather Rcpp tibble tidyr xts zoo]; }; RWebLogo = derive2 { name="RWebLogo"; version="1.0.3"; sha256="1n65mlnr163ywjnyyngnigbj0wpgkr38c3nx8hw5r8mwjnf3d617"; depends=[findpython]; }; - RWeka = derive2 { name="RWeka"; version="0.4-43"; sha256="16hp8vkigk7wqwz51f68g5sp65hbs2yp7srh7k881wfg6mcpl8lc"; depends=[rJava RWekajars]; }; + RWeka = derive2 { name="RWeka"; version="0.4-44"; sha256="1j3v9hlwc4w4kinm62yy8rmqi0f21dlgjdg2ghxla0gbmqvr88zk"; depends=[rJava RWekajars]; }; RWekajars = derive2 { name="RWekajars"; version="3.9.3-2"; sha256="06nsylv65z9hxym1b6qnwllh306bq5phsgr0qn4nyr5im8cv1rhn"; depends=[rJava]; }; RWiener = derive2 { name="RWiener"; version="1.3-3"; sha256="0afrgflyfjv4jqm04had74zz4cs934zwvyxaan1r4qpg383kibpq"; depends=[]; }; RWildbook = derive2 { name="RWildbook"; version="0.9.3"; sha256="1pznzmv8n33hhj61h07fha1gzafcx705n8323cnz3mx6ziijfh28"; depends=[data_table jsonlite marked]; }; @@ -4200,7 +4215,7 @@ in with self; { RandVar = derive2 { name="RandVar"; version="1.2.1"; sha256="17c6bx644n604zpggmwx1z3krgd9v7c88il45cf5yhp7zf7cc718"; depends=[distr distrEx startupmsg]; }; RandomCoefficients = derive2 { name="RandomCoefficients"; version="0.0.2"; sha256="04l0aczrlbkjk0687w2gxs85ia71yy69mgankwkl37ksznh6y81m"; depends=[fourierin ks orthopolynom polynom RCEIM rdetools robustbase sfsmisc snowfall statmod tmvtnorm VGAM]; }; RandomFields = derive2 { name="RandomFields"; version="3.3.13"; sha256="0j9z7m4i6kc5v6xn6806735srxsqvmf3ghk56sss37577652my6v"; depends=[RandomFieldsUtils sp]; }; - RandomFieldsUtils = derive2 { name="RandomFieldsUtils"; version="0.5.6"; sha256="17hwdiq4xx0yn6kali8ydh1i4nnszvyhjp4ksryr0856dihl83pj"; depends=[]; }; + RandomFieldsUtils = derive2 { name="RandomFieldsUtils"; version="1.0.11"; sha256="0m7d46kp7r70v399lk9gf60m0qn548fhdsmnq8kjqmp8dw52s8dz"; depends=[]; }; RandomForestsGLS = derive2 { name="RandomForestsGLS"; version="0.1.3"; sha256="1xqzpfgs6hdkaf99xgrxc4m5k73vpvkhpgb4bw01rhhay08zzv4g"; depends=[BRISC matrixStats pbapply randomForest]; }; Randomuseragent = derive2 { name="Randomuseragent"; version="0.0.1"; sha256="1ym272z5a2wnprz59db8knszzqglmrdmk77r7cfyzy5jwcqzy4jn"; depends=[]; }; RanglaPunjab = derive2 { name="RanglaPunjab"; version="2.3.4"; sha256="01j3gww9kil02d44jwlkz6j7lwn2him830bnshkly0s7mgh22pgr"; depends=[jpeg shiny tidyverse]; }; @@ -4222,7 +4237,7 @@ in with self; { Ravages = derive2 { name="Ravages"; version="1.0.0"; sha256="1967s8hp6nd1a1d385rx6sp4hd01h0gcd7hvdakc2lh7xbdnlj8i"; depends=[bedr BH curl dfidx Formula gaston mlogit Rcpp RcppEigen RcppParallel]; }; RavenR = derive2 { name="RavenR"; version="2.1.4"; sha256="09gz4n1rvzzrmc1wszkyxa1zs6mj6sg9b997yiszlk89nvcbyr2v"; depends=[colorspace cowplot DiagrammeR dplyr dygraphs gdata ggplot2 igraph lubridate magrittr purrr Rcpp RCurl scales stringr tidyr xts zoo]; }; RawHummus = derive2 { name="RawHummus"; version="0.2.0"; sha256="0zbbmkvbd5zgfpzvgcs2zjl2mych0zyfw4my34jq970ax58d4frj"; depends=[data_table dplyr kableExtra plotly purrr RaMS RColorBrewer rmarkdown shiny shinycustomloader shinydashboard shinydashboardPlus shinyFiles shinyMatrix shinyvalidate]; }; - Rbeast = derive2 { name="Rbeast"; version="0.2.2"; sha256="12i6jm7x1hwkj6skva9sli02rm4krzb2gmzny68d9cjhdcan5baq"; depends=[]; }; + Rbeast = derive2 { name="Rbeast"; version="0.9.1"; sha256="0avgd3kl85gw1cd3k6jw800r4a7d8qcmcakk6vjgg56friddx3c5"; depends=[]; }; Rbent = derive2 { name="Rbent"; version="0.1.0"; sha256="0xkb57dhhfd3342rv0xwbhbhn4zp5fbfch84fbh0sickm09l9vrj"; depends=[Rfit]; }; Rbgs = derive2 { name="Rbgs"; version="0.2"; sha256="1q0dnbcpgx7x9klr6z33z6g2p9p8mrmhnsqjy6qw15ch720rrgn3"; depends=[imager magrittr rJava]; }; Rbitcoin = derive2 { name="Rbitcoin"; version="0.9.2"; sha256="0ndq4kg1jq6h0jxwhpdp8sw1n5shg53lwa1x0bi7rifmy0gnh66f"; depends=[data_table digest RCurl RJSONIO]; }; @@ -4285,7 +4300,7 @@ in with self; { RcmdrPlugin_temis = derive2 { name="RcmdrPlugin.temis"; version="0.7.10"; sha256="02rs5xdj6g57frndc87fly0ans16584j4d0rfpy1h72655cz66ab"; depends=[ca lattice latticeExtra NLP R2HTML Rcmdr RColorBrewer slam stringi tcltk2 tm zoo]; }; Rcolombos = derive2 { name="Rcolombos"; version="2.0.2"; sha256="0l92icjqqm5fxafqwd09lnmv5x6kvjdg8cphlm37q86nslwr5rkk"; depends=[httr]; }; Rcompadre = derive2 { name="Rcompadre"; version="1.1.0"; sha256="025r6dq5qs3ri5nkg4mr76jzps2p9y56i8514m97amq8lzrxl8h4"; depends=[popdemo tibble]; }; - Rcplex = derive2 { name="Rcplex"; version="0.3-3"; sha256="0abmrqphrpdlc831hwbwx15z4vdgn385kxhnqlbb9v0sjmfyszsl"; depends=[slam]; }; + Rcplex = derive2 { name="Rcplex"; version="0.3-4"; sha256="04xc5qzzwb4v44nwvc7y79kfhdyrm21ff92243a0q9fwnl684vjn"; depends=[slam]; }; Rcpp = derive2 { name="Rcpp"; version="1.0.7"; sha256="07fwlgmx0ib4nziqbrylla2dlakw04vzny9w4qbfvnhn49rs9r8m"; depends=[]; }; Rcpp11 = derive2 { name="Rcpp11"; version="3.1.2.0.1"; sha256="0vw41plcl7hbi0af3la0sb4x8zqnhxjpjslx8r8cllfamy9dixki"; depends=[]; }; RcppAPT = derive2 { name="RcppAPT"; version="0.0.7"; sha256="00p4nciy6rv9plzk13sxfvdsr6m9ackjmg647pha9s8nbhlbdjf4"; depends=[Rcpp]; }; @@ -4308,7 +4323,7 @@ in with self; { RcppDynProg = derive2 { name="RcppDynProg"; version="0.2.0"; sha256="10nc0sx3n83kg8rddbajifr9q8iyjmm59z5xcpqfmmfi345i26al"; depends=[Rcpp RcppArmadillo wrapr]; }; RcppEigen = derive2 { name="RcppEigen"; version="0.3.3.9.1"; sha256="0qp9gypar280lm84pc8w0fxw4jgwqygwi3qnl5sl52kpkcj8c14a"; depends=[Matrix Rcpp]; }; RcppEigenAD = derive2 { name="RcppEigenAD"; version="1.0.0"; sha256="18zm9hsfqwiicxsdm87ix3qc261ljxxn2s736p6aayx82b6vwkz6"; depends=[BH functional memoise Rcpp RcppEigen Rdpack readr]; }; - RcppEnsmallen = derive2 { name="RcppEnsmallen"; version="0.2.18.0.1"; sha256="0n59wh9sz723i9c3p7j6ca0ay20fxra1215xczzwgk492iqravyi"; depends=[Rcpp RcppArmadillo]; }; + RcppEnsmallen = derive2 { name="RcppEnsmallen"; version="0.2.18.1.1"; sha256="1xbxyxsx2vczf003b9kj3xyph3bkawp3h4lvxblxmklxpd1s8lfb"; depends=[Rcpp RcppArmadillo]; }; RcppExamples = derive2 { name="RcppExamples"; version="0.1.9"; sha256="0568zipgjxgmx086mlfpp5n7v8kf50gwrylvhl1bgvzb2vvr9dhj"; depends=[Rcpp]; }; RcppFaddeeva = derive2 { name="RcppFaddeeva"; version="0.1.0"; sha256="1rah18sdfmbcxy83i7vc9scrwyr34kn9xljkv9pa31js68gn2jrl"; depends=[knitr Rcpp]; }; RcppFarmHash = derive2 { name="RcppFarmHash"; version="0.0.2"; sha256="0nkismq7hmp1ahwv4z438zrcj7mqsfmas2yd6av6k2cmkgklqkbk"; depends=[Rcpp]; }; @@ -4350,7 +4365,7 @@ in with self; { Rd2md = derive2 { name="Rd2md"; version="0.0.5"; sha256="1kqni87jg3avpcir1ls2kkf6qafkkdkcv51d9azsbqmji5168vlf"; depends=[knitr]; }; Rd2roxygen = derive2 { name="Rd2roxygen"; version="1.12"; sha256="0ajbi1v2hgfal5phrgdp172qkl0n1x67pqi0srbclk1ymjnlnrjh"; depends=[formatR roxygen2 xfun]; }; Rdca = derive2 { name="Rdca"; version="0.1.0"; sha256="06s4n5xpla937q9f55xmsickvdiwiapxmwqvn6k0zsacisscaagl"; depends=[dplyr magrittr minpack_lm Rcpp RcppArmadillo Rdpack]; }; - Rdiagnosislist = derive2 { name="Rdiagnosislist"; version="0.2"; sha256="0x08c5093kqjaw5hw7y2xhyshp25rlfmh3q7508cj1xk41msygx8"; depends=[bit64 data_table]; }; + Rdiagnosislist = derive2 { name="Rdiagnosislist"; version="1.0"; sha256="0f7dikc23z7gyhi29dg2l4l1q178d16nad98xvmdbygah8k1b377"; depends=[bit64 data_table]; }; Rdice = derive2 { name="Rdice"; version="1.0.0"; sha256="1xibvm690808p2g3jch7rh1825yrpgln2hjfclgxjwn822qvs4xr"; depends=[data_table]; }; Rdimtools = derive2 { name="Rdimtools"; version="1.0.8"; sha256="0hzr8yiiwjik0ppr7lak864nngr9i68ib01x9v4g86ixmgakha0w"; depends=[CVXR maotai MASS mclustcomp RANN Rcpp RcppArmadillo RcppDE RcppDist Rcsdp Rdpack RSpectra]; }; Rdistance = derive2 { name="Rdistance"; version="2.1.3"; sha256="03wh6y9h5jgfc6xdncpgyz0v7lqavikp3pf5wwfmm2rqfj7yjr8c"; depends=[]; }; @@ -4461,7 +4476,7 @@ in with self; { RmarineHeatWaves = derive2 { name="RmarineHeatWaves"; version="0.17.0"; sha256="09lrrxnkkfnbidnmag1czx2xzssdl09348nkc6pqgq6xz36a3mqc"; depends=[dplyr ggplot2 lazyeval lubridate plyr raster rlang tibble tidyr zoo]; }; RmecabKo = derive2 { name="RmecabKo"; version="0.1.6.2"; sha256="1i08wlfd14wmvwrsvjyhgzxkwzfp4jiwbzymw8m25pvyjxgi7jmy"; depends=[Rcpp stringr]; }; Rmisc = derive2 { name="Rmisc"; version="1.5"; sha256="1ijjhfy3v91fspid77rrkc5dkcb2lav37wc3f4k5lwrn24wzy5y8"; depends=[lattice plyr]; }; - Rmixmod = derive2 { name="Rmixmod"; version="2.1.5"; sha256="0cl0bl7554abjwz2as8gqvrzqswlw5727dac5302p7ksy3id9a1j"; depends=[Rcpp RcppEigen]; }; + Rmixmod = derive2 { name="Rmixmod"; version="2.1.6"; sha256="0vrpqyckjsscgdh5yny4d1jkq16w3kd8nl97ycdc2vmz1q6y1a6s"; depends=[Rcpp RcppEigen]; }; RmixmodCombi = derive2 { name="RmixmodCombi"; version="1.0"; sha256="0cwcyclq143938wby0aj265xyib6gbca1br3x09ijliaj3pjgdqi"; depends=[Rcpp Rmixmod]; }; Rmosek = derive2 { name="Rmosek"; version="1.3.5"; sha256="18q39n2p3gms9zqrl8g15rjjk4v64365v0rm8r7zvvivh1hy5xa0"; depends=[]; }; Rmpfr = derive2 { name="Rmpfr"; version="0.8-7"; sha256="1ljpbxvm4agbxnab5dfffbpw5k964hy3gw57dzydq1gpbxwdphlk"; depends=[gmp]; }; @@ -4488,7 +4503,7 @@ in with self; { RobinHood = derive2 { name="RobinHood"; version="1.6"; sha256="1513z92kk7p1d25zlm597yfswdx4x2w880366cs06j7nfg32izir"; depends=[dplyr httr jsonlite lubridate magrittr profvis uuid]; }; Robocoap = derive2 { name="Robocoap"; version="0.1-1"; sha256="0aj6iv85a1zfaknjhrzf6lnf0qn726dvnj4dywg9nii1kkqrkq2w"; depends=[data_table igraph markovchain tm]; }; RobustAFT = derive2 { name="RobustAFT"; version="1.4-5"; sha256="1i119qqlavfj7k0srb8fbbyy2nhsjv9rgrni854liizr9m51cgac"; depends=[robustbase survival]; }; - RobustBF = derive2 { name="RobustBF"; version="0.1.0"; sha256="0wi0k1cjalj1bg5fkzp69mlxl3nlc26xj229gbr9i168bri03sf7"; depends=[]; }; + RobustBF = derive2 { name="RobustBF"; version="0.2.0"; sha256="137lsk72sx29lhkc1s698k015vvbmdzb23i8pnlk5204bjfqzch8"; depends=[]; }; RobustBayesianCopas = derive2 { name="RobustBayesianCopas"; version="2.0"; sha256="0cbibfp4y45cc1disp2r37v0jln0cd9gy3d77z3k9ybj1gg8wa88"; depends=[rjags statip]; }; RobustCalibration = derive2 { name="RobustCalibration"; version="0.5.1"; sha256="0wsnvryvrl37acljrda2dm1d8aynqiy66yd2i857m035whixfpqa"; depends=[Rcpp RcppEigen RobustGaSP]; }; RobustGaSP = derive2 { name="RobustGaSP"; version="0.6.3"; sha256="14frbm41f75664ik520724psnh6h24qhp09fbwbcm6waqavs3q12"; depends=[nloptr Rcpp RcppEigen]; }; @@ -4508,6 +4523,7 @@ in with self; { RoughSets = derive2 { name="RoughSets"; version="1.3-7"; sha256="0g6nx0cak6619hxv1fq3b30xv0bdwxb776qkdj6ihig6nhkm2hkj"; depends=[Rcpp]; }; RoundAndRound = derive2 { name="RoundAndRound"; version="0.0.1"; sha256="1q3xb6y9ip8csivd0qijifxsm3h7zkwz8lxfi4ffdcgrvbl03v8q"; depends=[geometry rgl]; }; Routliers = derive2 { name="Routliers"; version="0.0.0.3"; sha256="1yrzl3gqh7xkclqdqjwy4yn7qawixpb9mzw31a6wxnrr09hzv989"; depends=[ggplot2 MASS]; }; + Rpadrino = derive2 { name="Rpadrino"; version="0.0.2"; sha256="02vzw19gl4x3xm92v5sfxiw5b9mzrzdl6drc6gy444f55is2dzqb"; depends=[ggplot2 ipmr magrittr mvtnorm purrr rlang rmarkdown truncdist]; }; Rpdb = derive2 { name="Rpdb"; version="2.3"; sha256="0zy5f7bli6ppc9giwf8845mzjcv54r2sqb8hxwgbn9k6rjlszgi8"; depends=[rgl]; }; RpeakChrom = derive2 { name="RpeakChrom"; version="1.1.0"; sha256="1r8f6knpz83arz2kabizx5yyh1myg0h310qlwh8rmy88cdxi1ps9"; depends=[ggplot2 minpack_lm pracma ptw]; }; Rphylip = derive2 { name="Rphylip"; version="0.1-23"; sha256="0kpqmik4bhr74ib8yvaavr10z4v4w3li5vibdhz7lvz35jfirg9r"; depends=[ape]; }; @@ -4526,7 +4542,7 @@ in with self; { Rsagacmd = derive2 { name="Rsagacmd"; version="0.1.1"; sha256="1x9bsl1gn16cld50a8xdzpvb1y0b5ma2jdald91hpsygp7kf25nm"; depends=[foreign processx raster rgdal rlang sf stars stringr terra tibble XML]; }; Rsampling = derive2 { name="Rsampling"; version="0.1.1"; sha256="14rp3j7iaii4rc3jkbijmbgvlagxxqjkz3vvfwwpxix43rsi8zsk"; depends=[]; }; Rsconctdply = derive2 { name="Rsconctdply"; version="0.1.3"; sha256="12xc1laxgivv4szp8341pvhmxnzzzzc2s4jhnqsqrbx71lbd9szg"; depends=[dplyr rjson rsconnect]; }; - Rserve = derive2 { name="Rserve"; version="1.8-9"; sha256="102sirdbiwjnh5rh5njpc7mafvz4c90naxgqccpalama3a0mvmbw"; depends=[]; }; + Rserve = derive2 { name="Rserve"; version="1.8-10"; sha256="0b2x6kqrc23xah6bg7c6ncmq8wkj4z898r2qjwjyinsq965a4qxg"; depends=[]; }; Rsfar = derive2 { name="Rsfar"; version="0.0.1"; sha256="1xskvvvavkdyjhb99qlii9qc0q1m36mxx6g0ybgwbq26lq4ypq7l"; depends=[fda]; }; Rsgf = derive2 { name="Rsgf"; version="1.0.0"; sha256="1d2bk20ixnfkzbimvsj56arf7brgkwlyrs80snfn5cnvmwic0h8i"; depends=[ggplot2 png stringi stringr]; }; RsimMosaic = derive2 { name="RsimMosaic"; version="1.0.3"; sha256="0jlzrs9xxlpazvq3iw8znk0bd00bzlry7bgxsxq7xl23akizj0ji"; depends=[fields jpeg RANN]; }; @@ -4537,7 +4553,7 @@ in with self; { RsqMed = derive2 { name="RsqMed"; version="0.1.7.1"; sha256="18r78svwbnri5283s5nxg4vrp29r6xx13h0n6w634jdpwaiw56gk"; depends=[GMMAT SIS]; }; Rssa = derive2 { name="Rssa"; version="1.0.4"; sha256="19q87g1z242hm2n4jb93qyplliqsj99bvfwm4vq54bbqyqbba5a1"; depends=[forecast lattice svd]; }; RstoxData = derive2 { name="RstoxData"; version="1.2.1"; sha256="0xfznv0nl7xymlxbd7g0lbxqw1zcyc9mm4mx0nwpw896vz7dvyvw"; depends=[data_table Rcpp stringi units xml2 xslt]; }; - Rsurrogate = derive2 { name="Rsurrogate"; version="3.0"; sha256="1xfz3m5d17sj8f8swvxrx42cpgvn8h7840wg55gdacybw7ng2dw0"; depends=[Matrix survival]; }; + Rsurrogate = derive2 { name="Rsurrogate"; version="3.1"; sha256="1l80xl7q6w97m80wj2639rhbqvxyl87r9lisk8cjf2bvcmf0spmb"; depends=[Matrix survival]; }; Rsymphony = derive2 { name="Rsymphony"; version="0.1-31"; sha256="1acvxh2y9gvcv9cz13ahvsz89w39h35hmjxj2vf0ik3finbi50r8"; depends=[]; }; RtD3 = derive2 { name="RtD3"; version="0.0.1"; sha256="0zbm9pf1z8xl99aj64xy8q3hly98c2rzy34fzkbjyndysvxf9032"; depends=[data_table geojsonsf htmlwidgets jsonlite purrr]; }; Rtauchen = derive2 { name="Rtauchen"; version="1.0"; sha256="09282k6qsjxgm26682npfjymmbx5g8flcc44awmkjl2k4fa1q9ha"; depends=[]; }; @@ -4583,7 +4599,7 @@ in with self; { SAMTx = derive2 { name="SAMTx"; version="0.3.0"; sha256="18r03w74fcra3c0xa76jnkkms9pjirdmgb2k1dnz7symqf9cvc5l"; depends=[BART]; }; SAMUR = derive2 { name="SAMUR"; version="0.6"; sha256="0iyv7ljjrgakgdmpylcxk3m3xbm2xwc6lbjvl7sk1pmxvpx3hhhc"; depends=[Matching]; }; SAMURAI = derive2 { name="SAMURAI"; version="1.2.1"; sha256="02fipbjcsbp2b2957x6183z20icv1yly2pd1747nyww9bmpa7ycm"; depends=[metafor]; }; - SAMtool = derive2 { name="SAMtool"; version="1.2.2"; sha256="0mpky23njv2svmph0flw029iv3dxsw43q4j5if0zadlnqpz7qvnz"; depends=[corpcor dplyr gplots MSEtool RcppEigen rmarkdown snowfall TMB vars]; }; + SAMtool = derive2 { name="SAMtool"; version="1.2.3"; sha256="0kkwqpzvzg5kkxdznkxr3a0bl4kb2fi8wfyhx8ihwvdira3fp75r"; depends=[corpcor dplyr gplots MSEtool RcppEigen rmarkdown snowfall TMB vars]; }; SAPP = derive2 { name="SAPP"; version="1.0.8"; sha256="1lb148s8rdx1phmx8ihncgb45iqxzracxznys7zyzs8qcf6hm5wq"; depends=[]; }; SAR = derive2 { name="SAR"; version="1.0.3"; sha256="1cnf0hsq82lzssvz5xs2abvnrjxda0g6mjx70a1j223zdwjqmw64"; depends=[AzureRMR AzureStor dplyr httr jsonlite Matrix R6 Rcpp RcppArmadillo RcppParallel]; }; SARP_compo = derive2 { name="SARP.compo"; version="0.1.5"; sha256="17pvgc7alv59lxnrz1rj5gdl2lg90jxfwkyn8j802n22r3bmzcsm"; depends=[car igraph]; }; @@ -4602,7 +4618,7 @@ in with self; { SBRect = derive2 { name="SBRect"; version="0.26"; sha256="16g0ciy9q9irypsl8x36i0lavl41j3af13r2si0by8q6wj56pxi4"; depends=[rJava]; }; SBSA = derive2 { name="SBSA"; version="0.2.3"; sha256="1v23lzzziyjlvgn5p2n1qcq2zv9hsyz2w15lbnfi5wvinxhlg8sc"; depends=[Rcpp RcppArmadillo]; }; SBSDiff = derive2 { name="SBSDiff"; version="0.1.0"; sha256="0mw1646dmhxw6zz4pq7j0g3mf9bjn72g43sq7m72r8ma8ciqj7r2"; depends=[]; }; - SBdecomp = derive2 { name="SBdecomp"; version="1.1"; sha256="0i7nkmaix2w0kxjaxhkkizpicvm18838qa6n39azxsjqph04ykmd"; depends=[survey twang]; }; + SBdecomp = derive2 { name="SBdecomp"; version="1.2"; sha256="0p3f028c674j6bl82sgmbwlim2hljxm38qiff78pzn5yx34y3r0b"; depends=[survey twang]; }; SBmedian = derive2 { name="SBmedian"; version="0.1.1"; sha256="1pxwsp6z1qvhmzprhr8f8i1id5zy4ppq7dxbd6ny2h1r1zvy16xm"; depends=[expm Rcpp RcppArmadillo Rdpack]; }; SC_MEB = derive2 { name="SC.MEB"; version="1.1"; sha256="04vv1ckirfmjvb3hfk3ldma96j4c6ykjgf77f13n550cvp2bhp3w"; depends=[BiocSingular ggplot2 Matrix mclust purrr Rcpp RcppArmadillo S4Vectors scater scran SingleCellExperiment SummarizedExperiment]; }; SC2API = derive2 { name="SC2API"; version="1.0.0"; sha256="1z3rch5238qih5054ial8vjcpj1cdmzgc7cga9agnp58y19a1lcj"; depends=[data_table httr jsonlite]; }; @@ -4625,6 +4641,7 @@ in with self; { SCORPIUS = derive2 { name="SCORPIUS"; version="1.0.8"; sha256="0a9gl5fk3v1nmh5vd228pp2six9r6qy296w5xzhcc5by706r5xq7"; depends=[dplyr dynutils dynwrap ggplot2 lmds MASS Matrix mclust pbapply pheatmap princurve purrr ranger RANN RColorBrewer reshape2 tidyr TSP]; }; SCOUTer = derive2 { name="SCOUTer"; version="1.0.0"; sha256="1s0mmzfz0zhr5v4wagcjwdba8a5f57xr26vwml92dnw6lai37pj4"; depends=[ggplot2 ggpubr]; }; SCPME = derive2 { name="SCPME"; version="1.0"; sha256="0yhsaaa349wbrswcvp7w8c52wzp7rs3528rs4wqa8b3r3fh983mh"; depends=[doParallel dplyr foreach ggplot2 Rcpp RcppArmadillo RcppProgress]; }; + SCRIP = derive2 { name="SCRIP"; version="1.0.0"; sha256="1cv8443y2s67q3krsyj7r2d1vqv01w8xr0iz8dz4kijmhksyg7ng"; depends=[BiocGenerics BiocManager checkmate crayon edgeR fitdistrplus knitr mgcv S4Vectors Seurat SingleCellExperiment splatter SummarizedExperiment]; }; SCRSELECT = derive2 { name="SCRSELECT"; version="1.3-3"; sha256="118vwnd5gggvdhq7fbs0553l84vh5mhiag41q4svprd7p0pqd9hd"; depends=[mvtnorm]; }; SCRT = derive2 { name="SCRT"; version="1.3.1"; sha256="0wkxc22hv08riivjl09lhxvffqxxdy4xnvdmc2y69gssyinkbln1"; depends=[]; }; SCVA = derive2 { name="SCVA"; version="1.3.1"; sha256="1gdicpnbr8bdgrbwwslpwpzw2adpp94p8nhsrkdx0bjlpfhd4g9h"; depends=[ggExtra ggplot2 plotly scales]; }; @@ -4642,7 +4659,6 @@ in with self; { SDMtune = derive2 { name="SDMtune"; version="1.1.5"; sha256="1nfxm1g7kyvn7j7zkjwsn6bi5xz77bjna1dcbak9k8xnk627kxjw"; depends=[dismo gbm ggplot2 jsonlite maxnet nnet progress randomForest raster Rcpp rlang rstudioapi stringr whisker]; }; SDT = derive2 { name="SDT"; version="1.0.0"; sha256="1jwpfd1pnzy9wcl90qv5bgwi19shsw9064dvml9zwbif8yw8dzjj"; depends=[quadprog]; }; SDaA = derive2 { name="SDaA"; version="0.1-3"; sha256="0z10ba4s9r850fjhnrirj2jgnfj931vwzi3kw9502r5k7941lsx0"; depends=[]; }; - SDraw = derive2 { name="SDraw"; version="2.1.13"; sha256="1kx8kfga3zspfdgf9vq2lclszrhf3bfwkfhwqri64kn8fdr34jsq"; depends=[covr deldir rgeos sp spsurvey]; }; SE_EQ = derive2 { name="SE.EQ"; version="1.0"; sha256="09fqx2rcqpiv072l6gqgfz9pdhas98q4kkkm7m4y28k13q2gicgl"; depends=[MASS]; }; SEA = derive2 { name="SEA"; version="2.0"; sha256="1pw1509qjjqz63a8biwakdxqgln7kjviacqrjvp1323vf55bi4fs"; depends=[data_table doParallel foreach kolmim KScorrect MASS shiny]; }; SEAGLE = derive2 { name="SEAGLE"; version="1.0.1"; sha256="1j5wjjw7fl2m4h9brg8dyahf1vmn9wgc7jaajaz6z1xqm6fc0d9k"; depends=[CompQuadForm Matrix]; }; @@ -4655,7 +4671,7 @@ in with self; { SELF = derive2 { name="SELF"; version="0.1.1"; sha256="1yafjhxwsanr33dqy7w9x61ghldr29s8k6h68idq6nnfb77ghjyx"; depends=[bnlearn CompareCausalNetworks data_table Rcpp xgboost]; }; SEMID = derive2 { name="SEMID"; version="0.3.2"; sha256="0v1zrx5xxramsg2zzk7b2fyv6kky7xb1q1cg8vi6zg6ln9vgm2dk"; depends=[igraph R_methodsS3 R_oo R_utils]; }; SEMModComp = derive2 { name="SEMModComp"; version="1.0"; sha256="1za67470f13z8jsy3z588c7iiiz993d3vjqrb8v9fann2r6sf1md"; depends=[mvtnorm]; }; - SEMgraph = derive2 { name="SEMgraph"; version="1.0.3"; sha256="1w4bvg6qk88xbicqw0bncdnkdkbgs9brymxxj0xlpfgi1kr211mx"; depends=[boot cate corpcor dagitty diffusr flip gdata ggm GGMncv glmnet graph igraph lavaan Matrix pbapply protoclust RcppEigen Rgraphviz]; }; + SEMgraph = derive2 { name="SEMgraph"; version="1.0.4"; sha256="1v5zd16rgvwyylrvja8lwsljjg50l0k9y3d1rwgycs44sib30zqb"; depends=[boot cate corpcor dagitty diffusr flip gdata ggm GGMncv glmnet graph igraph lavaan Matrix pbapply protoclust RcppEigen Rgraphviz]; }; SEMrushR = derive2 { name="SEMrushR"; version="0.1.0"; sha256="19prwbh429ra69nz3nx4vzqmb46xssci74rk9mhpnzbi52ycg5gd"; depends=[]; }; SEMsens = derive2 { name="SEMsens"; version="1.0.2"; sha256="18qcwhn1j9ci6338spwgym9g8590p5nc5sdvnpby3xrs9wv76nqs"; depends=[lavaan]; }; SETPath = derive2 { name="SETPath"; version="1.0"; sha256="1dpgmki0dhph13h1fd3mbf308746wccgfz5g5gdm7bwbjnmjzd98"; depends=[]; }; @@ -4687,12 +4703,14 @@ in with self; { SIN = derive2 { name="SIN"; version="0.6"; sha256="0vq80m3vl8spdnlkwvwy0gk3ziyybqzjp3scnfdcpn942ds7sgg9"; depends=[]; }; SIPDIBGE = derive2 { name="SIPDIBGE"; version="0.1.5"; sha256="18gx00y8vnbx1d3z7ak3g17zwg6mv93dhm9a1c8i4nj4ih64csi6"; depends=[cli COVIDIBGE PNADcIBGE png PNSIBGE POFIBGE purrr rstudioapi tibble]; }; SIRE = derive2 { name="SIRE"; version="1.1.0"; sha256="0f624j087k7krg73bqn2qxdgzq66jyhvzz8n024vz3h4hwagxs5n"; depends=[dplyr igraph magrittr MASS Matrix matrixcalc numDeriv psych Rsolnp stringr systemfit]; }; + SIRmcmc = derive2 { name="SIRmcmc"; version="1.1"; sha256="1dqcp0mrddw0zl3zx0z077vd1x0p3q1j5cv8hxln9blmiv1lggx1"; depends=[Rcpp]; }; SIS = derive2 { name="SIS"; version="0.8-8"; sha256="1f5czwcgpmmn8habm24p3xh4w7jn2faais2x2gmaiq4dpjfnv6h8"; depends=[glmnet ncvreg survival]; }; SISIR = derive2 { name="SISIR"; version="0.1-2"; sha256="1bhvgkcnv27av2z5pifs76j4dwpkhzwg7c3jxpc8pwac1s9jiz53"; depends=[doParallel expm foreach glmnet Matrix RSpectra]; }; SITH = derive2 { name="SITH"; version="1.1.0"; sha256="1626nsbnz4fh49wymxm1cqb0nrfyxhmh9fmdxr62dzj5b53amknc"; depends=[Rcpp scatterplot3d]; }; SIfEK = derive2 { name="SIfEK"; version="0.1.0"; sha256="037ps6yfy7w6i8vm0b78c8w9kdmw312dl5nc2qz86rfk8kjg7w27"; depends=[MASS numDeriv ramcmc smfsb]; }; SK = derive2 { name="SK"; version="1.1"; sha256="19yg7yc2k4zz29bh42lw2jpjvkdj33f26xkfs8vz8lpp98yjf2vx"; depends=[FitAR GD MASS RColorBrewer rgeos rtop sp]; }; SKAT = derive2 { name="SKAT"; version="2.0.1"; sha256="1iz8s2r295w36m44s2frrz00q4zm78fyzx7kprmnz4kbg3spqqy8"; depends=[Matrix SPAtest]; }; + SKNN = derive2 { name="SKNN"; version="2.0"; sha256="021mc20mp1p87l48fy1v4lji0qg2cx5mzirv8c77q1x6378zjcfw"; depends=[]; }; SLBDD = derive2 { name="SLBDD"; version="0.0.2"; sha256="1ixynzrj6vdxn406zcisrkhf9yr172s80k70dishrainkpw2dk58"; depends=[cluster corpcor fGarch forecast glmnet gsarima imputeTS MASS Matrix matrixcalc MTS rnn TSclust tsoutliers]; }; SLC = derive2 { name="SLC"; version="0.3"; sha256="0l0y1sjj0glsb7vwla99ijclcgaq2y85bgz1wqm348n4shsmm2rs"; depends=[]; }; SLDAssay = derive2 { name="SLDAssay"; version="1.8"; sha256="04ykj7s9kpvg5bmf7x16154kfpdy45b7y7hhyh31sxlscv7c5bbp"; depends=[]; }; @@ -4893,7 +4911,7 @@ in with self; { SetRank = derive2 { name="SetRank"; version="1.1.0"; sha256="0p7vwsw05s5hfw1mfh3fbm9nfzsymnxzrdjin7k21dx7asb618wy"; depends=[data_table igraph XML]; }; SetTest = derive2 { name="SetTest"; version="0.2.0"; sha256="08wc6cbnannmwkncqhpcw6l0y7c1v7z3awk5j7fd853nszfmpbk0"; depends=[]; }; Seurat = derive2 { name="Seurat"; version="4.0.5"; sha256="18svlpfbgs5vdzw2jyg99kj0jacag6dwwhjdg1zpmrh0fm0praxg"; depends=[cluster cowplot fitdistrplus future future_apply ggplot2 ggrepel ggridges httr ica igraph irlba jsonlite KernSmooth leiden lmtest MASS Matrix matrixStats miniUI patchwork pbapply plotly png RANN RColorBrewer Rcpp RcppAnnoy RcppEigen RcppProgress reticulate rlang ROCR Rtsne scales scattermore sctransform SeuratObject shiny spatstat_core spatstat_geom tibble uwot]; }; - SeuratObject = derive2 { name="SeuratObject"; version="4.0.3"; sha256="06gch6416hmwpfxa7bidw5izfp4yvkdka7mvxp6grmldnj5iqm6g"; depends=[Matrix Rcpp RcppEigen rlang]; }; + SeuratObject = derive2 { name="SeuratObject"; version="4.0.4"; sha256="1308hjbs8br3gp9vwm65awgp6vimwgi2jyl1ryn96l84savn2ljq"; depends=[Matrix Rcpp RcppEigen rlang]; }; ShapeChange = derive2 { name="ShapeChange"; version="1.4"; sha256="1ch7avx8mxjk8vrp17inaihmbsv968wflyk1n4fbjvacbl24vn2b"; depends=[coneproj quadprog]; }; ShapePattern = derive2 { name="ShapePattern"; version="2.1.0"; sha256="10lqapjw2vypz1rrwgr7maw79g5j7g3gfp38g88w1sxlxasmx7by"; depends=[igraph landscapemetrics raster rgdal rgeos sp]; }; ShapeRotator = derive2 { name="ShapeRotator"; version="0.1.0"; sha256="1pg2m1wh7fbchm8gp3mngfnf5g2rbhvzim1bpzqyvxqpx6ynicsa"; depends=[plot3D]; }; @@ -4916,7 +4934,7 @@ in with self; { SigTree = derive2 { name="SigTree"; version="1.10.6"; sha256="18gh7azjr979ijc2y4yyskj24ay697rw3j7znc5p4a63s4vpxr9w"; depends=[ape MASS phyext2 phylobase phyloseq RColorBrewer vegan]; }; SightabilityModel = derive2 { name="SightabilityModel"; version="1.4.2"; sha256="0hll6cfl0zkxvdbfs7cdmqazinyyrg9vk4px2gb9s1dqix7cyvv5"; depends=[formula_tools Matrix msm plyr survey]; }; Signac = derive2 { name="Signac"; version="1.4.0"; sha256="0ca9ls5j6cgwkyzmxim9lb57zp9nsn2xrqm3w0wbhw5kar0i4yz0"; depends=[BiocGenerics data_table dplyr fastmatch future future_apply GenomeInfoDb GenomicRanges ggforce ggplot2 ggrepel ggseqlogo IRanges irlba lsa Matrix patchwork pbapply qlcMatrix Rcpp RcppRoll Rsamtools S4Vectors scales Seurat SeuratObject stringi tidyr]; }; - SignacX = derive2 { name="SignacX"; version="2.2.4"; sha256="1qm0slmmfn7rwr2mdsa6d3h575i4c243iffh6791iklbs3jw6n73"; depends=[igraph jsonlite lme4 Matrix neuralnet pbmcapply RColorBrewer RJSONIO Seurat]; }; + SignacX = derive2 { name="SignacX"; version="2.2.5"; sha256="0b38k3lxca985mqwvbbdczkjnn2x79kga05yw995gb6d20cjh96v"; depends=[igraph jsonlite lme4 Matrix neuralnet pbmcapply RColorBrewer RJSONIO Seurat]; }; SignifReg = derive2 { name="SignifReg"; version="4.2"; sha256="0bgw6dkn15rlpcqfpbar3nxvcvwd0afa3lss4idnb65kvcyzzljk"; depends=[car]; }; Sim_DiffProc = derive2 { name="Sim.DiffProc"; version="4.8"; sha256="16pzcs1g5ihza9a2glnkgd5pxi77l6w34vkn0vxcb78gc6syhbrd"; depends=[Deriv MASS]; }; Sim_PLFN = derive2 { name="Sim.PLFN"; version="1.0"; sha256="1jmsydhpfv2z9cr99hfy8cairhkkxpwk4wnz1adixwxazkn7qfah"; depends=[DISTRIB FuzzyNumbers]; }; @@ -4975,7 +4993,7 @@ in with self; { SmarterPoland = derive2 { name="SmarterPoland"; version="1.8"; sha256="19pxr1zch2bm5jw676dp0p2crvmdmvzyxz07vhx926axpb4i0xbp"; depends=[ggplot2 htmltools httr jsonlite rjson]; }; SmithWilsonYieldCurve = derive2 { name="SmithWilsonYieldCurve"; version="1.0.1"; sha256="0qvhd1dn2wm9gzyp6k7iq057xqpkngkb4cfmvmjqmf0vhysp371w"; depends=[]; }; SmoothHazard = derive2 { name="SmoothHazard"; version="1.4.1"; sha256="147wjxgxnijpmixrfyl8kd4scz2w1xb8dcwvpr60zg32nv22g17r"; depends=[lava mvtnorm prodlim]; }; - SmoothTensor = derive2 { name="SmoothTensor"; version="0.1.0"; sha256="0x9gk5yan034nbr0yxdgs4c9lhxfh8dy33jlfhrg2fapzg0n0b0m"; depends=[Matrix rTensor]; }; + SmoothTensor = derive2 { name="SmoothTensor"; version="0.1.1"; sha256="19mbxsbp656i4qdkr2wplil542pxxb3xfznh3vv2nxi23phr01gy"; depends=[Matrix rTensor]; }; SmoothWin = derive2 { name="SmoothWin"; version="3.0.0"; sha256="0zq2sq0w4rs3hrra24wgbbzv88d1hx6m8q8gmc5h6nbs1172hs66"; depends=[nlme Rfast]; }; Snake = derive2 { name="Snake"; version="1.0"; sha256="10i1bqsva70lzavfqvc56ga70ddjfwf0hqpspj8fqwa0jw86jmbh"; depends=[]; }; SnakesAndLaddersAnalysis = derive2 { name="SnakesAndLaddersAnalysis"; version="2.1.0"; sha256="0h3664h6d32q201qfyv9y2gg4fhg3azdpwpmx4qfbc10hsc1ghl9"; depends=[]; }; @@ -5002,7 +5020,7 @@ in with self; { SoupX = derive2 { name="SoupX"; version="1.5.2"; sha256="1zhd2vx4g3kpxpfq996h909k4lybzb79nw1kvhx7073aniq042c3"; depends=[ggplot2 Matrix Seurat]; }; SourceSet = derive2 { name="SourceSet"; version="0.1.3"; sha256="159kg4pna24yihkghxc2k5f56dqk8aypxcmj1whgnajmgab29ry1"; depends=[graph gRbase gtools igraph plyr progress reshape2 scales]; }; SoyNAM = derive2 { name="SoyNAM"; version="1.6.1"; sha256="1dgphlryw1810v93aq80p2c92aq6ccc25kabkgw4h1xinrpn263i"; depends=[lme4 NAM reshape2]; }; - SpATS = derive2 { name="SpATS"; version="1.0-15"; sha256="1gcvn2c56hphrfffb8aw8611jai0mk88khj5vr7i5a4p5glsc8dx"; depends=[data_table fields plot3Drgl spam]; }; + SpATS = derive2 { name="SpATS"; version="1.0-16"; sha256="1smnxawbxyy0kmg05rdxkym71civnvx83pjag97avvqsqlmzfbwk"; depends=[data_table fields plot3Drgl spam]; }; SpNMF = derive2 { name="SpNMF"; version="0.1.1"; sha256="1xybxx47i3ww5d7chwl38xc48fbsclgyxcki8h85c6dkm49dxy8i"; depends=[NMF]; }; SpNetPrep = derive2 { name="SpNetPrep"; version="1.2"; sha256="1jhjyrb0k5z21vn9bc444rxax3lxsyzyhggrcy7zl9ps7p4ra990"; depends=[leaflet maptools prodlim raster rgdal shiny shinythemes sp spatstat spatstat_core spatstat_geom spatstat_linnet]; }; SpaCCr = derive2 { name="SpaCCr"; version="0.1.0"; sha256="0qm1fr6nnax3i1i77fi73x1z8db557avh6kivs0nskb1dfj8ri4m"; depends=[abind dplyr ggplot2 Rcpp RcppArmadillo tidyr]; }; @@ -5025,7 +5043,7 @@ in with self; { SpatialAcc = derive2 { name="SpatialAcc"; version="0.1-4"; sha256="09rkzfzg6nh4n7dizkqrz651kp617l2557c9qpxacspl3ngbm82i"; depends=[sp]; }; SpatialBSS = derive2 { name="SpatialBSS"; version="0.12-0"; sha256="173zr8r0wp7zcg4ziqagfzzlwf5gjcywj5nqvsnnpwbgjagpfla1"; depends=[JADE Rcpp RcppArmadillo sp]; }; SpatialBall = derive2 { name="SpatialBall"; version="0.1.0"; sha256="09iy1smfqnb0rd2s9a1wqgscb1plwcwwph6a8215l4zrs6svszv2"; depends=[dplyr ggplot2 hexbin lubridate RColorBrewer]; }; - SpatialEpi = derive2 { name="SpatialEpi"; version="1.2.6"; sha256="053im9w1s5q388dd11lxplwf8vk83k3raqi93d9f475zfm221s49"; depends=[maptools MASS Rcpp RcppArmadillo sp spdep]; }; + SpatialEpi = derive2 { name="SpatialEpi"; version="1.2.7"; sha256="0hfspksv9dgi98kcjwa291x8dglskfl4d1cjkd2hqxlf73havpzx"; depends=[maptools MASS Rcpp RcppArmadillo sp spdep]; }; SpatialExtremes = derive2 { name="SpatialExtremes"; version="2.0-9"; sha256="1mhn1c8n3bmgf0fjyac3wji4790zswzkqliqcv3n8kv9806crb0y"; depends=[fields maps]; }; SpatialFloor = derive2 { name="SpatialFloor"; version="1.1.0"; sha256="07mwgcvkkq478l6wxvrdjs9d578x0kgs5xy86lgy5my0xqfcv6y8"; depends=[blocksdesign fields reshape2 taRifx]; }; SpatialGraph = derive2 { name="SpatialGraph"; version="1.0-2"; sha256="0cwswa5g3a6ng8qkwi04jz9pma4i0c16m7jpq6z3djzjin0znyk2"; depends=[igraph rgeos shape sp splancs]; }; @@ -5080,7 +5098,7 @@ in with self; { StatMeasures = derive2 { name="StatMeasures"; version="1.0"; sha256="1bnbz803xx8kqhy1cx545b35si6f10za0mp5z82qfvd4kv9a9izz"; depends=[data_table]; }; StatPerMeCo = derive2 { name="StatPerMeCo"; version="0.1.0"; sha256="1nm6brlj6h7jx8nqagrfk294ay3pfmkiizabwlb87qfnsfwchpk3"; depends=[]; }; StatRank = derive2 { name="StatRank"; version="0.0.6"; sha256="14d8v3bp8vgksi6q0mxajwd9s8zi6lns3qwi1vcr5xp9rjp4n6iy"; depends=[ggplot2 plyr truncdist]; }; - Statsomat = derive2 { name="Statsomat"; version="1.0"; sha256="02kqacq0zwapngbw42yqksrkjj0im55id3vx8j27j2wi62mmhpz8"; depends=[car corrplot data_table DDoutlier energy ggplot2 gridExtra kableExtra knitr readr reshape2 rmarkdown shiny shinydisconnect]; }; + Statsomat = derive2 { name="Statsomat"; version="1.1.0"; sha256="1lfgbbf1pcfbih5nfb6rbiq2h0hlxg1fzmcf4330yc48r998q4x6"; depends=[car corrplot data_table DDoutlier energy ggplot2 gridExtra kableExtra knitr readr reshape2 rmarkdown shiny shinydisconnect]; }; SteinIV = derive2 { name="SteinIV"; version="0.1-1"; sha256="1bm4lc7g9h9jkb1dpzb84289bwxcywp0a8vylv6ipvhiqbqk5d95"; depends=[]; }; SteinerNet = derive2 { name="SteinerNet"; version="3.1.0"; sha256="03wr746dkwp8vg91y986q0xvgz1y9b5q25g0kig2sx6m75li3yif"; depends=[igraph]; }; Stem = derive2 { name="Stem"; version="1.0"; sha256="1fr02mi5qyxbqavdh2hg8ggw4nfjh3vs7g0vh834h6y0v53l71r5"; depends=[MASS mvtnorm]; }; @@ -5130,9 +5148,9 @@ in with self; { SuppDists = derive2 { name="SuppDists"; version="1.1-9.5"; sha256="1i3iq12a5x5k49ac01mikzcrrq9gc148xq3m08h4xm07bha6f2v8"; depends=[]; }; SurfaceTortoise = derive2 { name="SurfaceTortoise"; version="1.0.2"; sha256="1l586x9np5rclqdrnv8b72ixlppzlnsq4yf99ny6aq5a9lwzmcgm"; depends=[gstat raster rgeos sp]; }; Surrogate = derive2 { name="Surrogate"; version="2.0"; sha256="0jpg20cd0m9xaay9y4fkrdvz5hsr54q2n4jv0n66xjral24gxyb1"; depends=[extraDistr ks lattice latticeExtra lme4 logistf MASS mixtools msm nlme OrdinalLogisticBiplot pbapply rms rootSolve survival]; }; - SurrogateOutcome = derive2 { name="SurrogateOutcome"; version="1.0"; sha256="0x91bmr4n9zn9cc72s91fzzsqhzhrkfpcbcla00gcsfmbjqz3997"; depends=[survival]; }; + SurrogateOutcome = derive2 { name="SurrogateOutcome"; version="1.1"; sha256="1wiqn9gfvj225dvmp49fyybp77np507s04f28a9wa9jiyvqf7m97"; depends=[survival]; }; SurrogateRegression = derive2 { name="SurrogateRegression"; version="0.5.0"; sha256="06xdkg75fs1ymq5x20k5wnv6rji13rk049pm11b686wjvwycrsg7"; depends=[mvnfast plyr Rcpp RcppArmadillo]; }; - SurrogateTest = derive2 { name="SurrogateTest"; version="1.2"; sha256="0wkyz9qkmvsrhvdga6w0qkbgqr7kr0yh04kkc19824sqnx452dc5"; depends=[survival]; }; + SurrogateTest = derive2 { name="SurrogateTest"; version="1.3"; sha256="0vs1ii3l6i6cmswyv6xjbya5filfixppyzmnw099g9s4x8kn0kq7"; depends=[survival]; }; SurvCorr = derive2 { name="SurvCorr"; version="1.0"; sha256="01rqdl503q1qnkn49iqnsjzis6azdsfi6s2hjky5k2zd6c9g18k5"; depends=[fields survival]; }; SurvDisc = derive2 { name="SurvDisc"; version="0.1.1"; sha256="0ajvnm0a4krbm0m584bg58hd7dzl0f2rz5as1zsajx8agywb5qmv"; depends=[cubature MASS mvtnorm nlme simex survival]; }; SurvGSD = derive2 { name="SurvGSD"; version="1.0.0"; sha256="0aa5zaf9akkqkxs8iqwnm93sfwakhhhs3qfafbk0vrwmb5yvzzm1"; depends=[flexsurv ldbounds mnormt]; }; @@ -5150,6 +5168,7 @@ in with self; { SwissAir = derive2 { name="SwissAir"; version="1.1.5"; sha256="0lh69924vhyilgn562jqn8m7z4dq3xmdj09501sbs7hbxfaiiyly"; depends=[]; }; SyNet = derive2 { name="SyNet"; version="2.0"; sha256="0mb9dscddkvmkf7l3bbcy4dlfmrvvy588vxdqy5dr783bpa5dkiw"; depends=[tkrplot]; }; SyScSelection = derive2 { name="SyScSelection"; version="1.0.2"; sha256="16zx507hlzhdxbh6gzndbgmzpyp6vc59h441l4gv8lx58zi9kyjd"; depends=[pracma]; }; + SymTS = derive2 { name="SymTS"; version="1.0-1"; sha256="1g1kjcba25g3nphbndkzvkipvihiqb6lvijsicqr7qh57g94gqpl"; depends=[]; }; SymbolicDeterminants = derive2 { name="SymbolicDeterminants"; version="2.0.0"; sha256="0hf9b9g2vgpyqbxgi5rkkls2b8vw1zrwl8lymwvwb6y1vwfl9pym"; depends=[arrangements fs]; }; SyncMove = derive2 { name="SyncMove"; version="0.1-0"; sha256="1jlnsj5v8y5pijfkww7ng7nkwvj93naw29wcxxj130ww5qk7qk1z"; depends=[]; }; SyncRNG = derive2 { name="SyncRNG"; version="1.3.0"; sha256="0sywfmmy6mq6qsxkxjc67665snn1jds01j3h7ni1200igja139g2"; depends=[]; }; @@ -5336,13 +5355,13 @@ in with self; { TideTables = derive2 { name="TideTables"; version="0.0.3"; sha256="0xfwikz9f58pw1j5vp45wp44lbr8b8ijlac474nzahq46d411afp"; depends=[chron data_table]; }; Tides = derive2 { name="Tides"; version="2.1"; sha256="0da3z010ali83qf8mf1znicqv8vvsa5r93mc40ax60ln2w33nlrm"; depends=[]; }; TidyConsultant = derive2 { name="TidyConsultant"; version="0.1.0"; sha256="1ipv0nx0xmba62c7qjgadpjsr850d9dl0z5zjkh1rj6kfxdgiis2"; depends=[autostats badger framecleaner pacman presenter tidybins validata]; }; - TidyMultiqc = derive2 { name="TidyMultiqc"; version="0.1.0"; sha256="0m2f22glndia57vbr4j7xzr6m8xnwyq3qr624x1wl33a13izfzl8"; depends=[assertthat dplyr HistDat jsonlite magrittr purrr rlang stringr tibble]; }; + TidyMultiqc = derive2 { name="TidyMultiqc"; version="1.0.0"; sha256="1dbkn6vgzkmp3vs528f1vf10hk4ph381z6bq8nshim5ggmvl4wvy"; depends=[assertthat dplyr jsonlite magrittr purrr rlang stringr tibble]; }; TileManager = derive2 { name="TileManager"; version="0.4.0"; sha256="0kc3wgk5n8cxg901c19fjfzq7na46jq0x3gy22fi4jccjb0vgv0v"; depends=[APfun raster rgeos sp XML]; }; TimeProjection = derive2 { name="TimeProjection"; version="0.2.0"; sha256="04yr4cg2khkw9n3y3qk0ni1327k4pxm09zz2xg8mpjdvgi4p9yi3"; depends=[lubridate Matrix timeDate]; }; TimeSeries_OBeu = derive2 { name="TimeSeries.OBeu"; version="1.2.4"; sha256="0ihigrbdkfbqqjxqfx3y5q8ii8n60301s7190jr50a88l1xzgmh8"; depends=[forecast jsonlite locfit trend tseries]; }; TimeVTree = derive2 { name="TimeVTree"; version="0.3.1"; sha256="124kg9zcq4b2j4qvg9f6gykbmzf69qjnnw54nv213ip2h4rdkv32"; depends=[survival]; }; TimeWarp = derive2 { name="TimeWarp"; version="1.0.15"; sha256="1v6f6d1h9dc8npdy0ph5hhc4jjkzh8kac48lz4ahgngi9n0xwql9"; depends=[]; }; - Tinflex = derive2 { name="Tinflex"; version="1.7"; sha256="0cr65jhdk69lcrivazkr95krzmzmjkc7cxgdn1waw0lmp278dr4w"; depends=[]; }; + Tinflex = derive2 { name="Tinflex"; version="1.8"; sha256="053w4l5j499brlbbh1bc41nj01j1533ixd9vggmvpkzk7zgdsasy"; depends=[]; }; TipDatingBeast = derive2 { name="TipDatingBeast"; version="1.1-0"; sha256="07lw6jnr76qrxwrwv90hi5ih2xf6g4sz4hfapk5vf1y3ayfskkl0"; depends=[DescTools mclust TeachingDemos]; }; TmCalculator = derive2 { name="TmCalculator"; version="1.0.1"; sha256="1h1dk4kq6zi3a9wi6bxsqz3b9jk740811dp65sb6lqc668xy5mps"; depends=[]; }; Tmisc = derive2 { name="Tmisc"; version="1.0.0"; sha256="1zs7zxawl13pils9hff0i5aplxy32ccp27jcmjdh39lgf083s3v3"; depends=[dplyr magrittr rstudioapi tibble]; }; @@ -5365,7 +5384,7 @@ in with self; { TransModel = derive2 { name="TransModel"; version="2.1"; sha256="0brlr4w5k8xsgbrizm7ha0cmq0kqzd2fcjpszq7gym844jj93csi"; depends=[MASS survival]; }; TransP = derive2 { name="TransP"; version="0.1"; sha256="0p6pfcp8qjdah0lfhx0a396nxjzp3ckpda9hl3snpppx79iyww55"; depends=[]; }; TransPhylo = derive2 { name="TransPhylo"; version="1.4.5"; sha256="0g92kwi1nlmpc8m4pc9kv9xhczryr2kn9icfr3js7da7vy8g50xy"; depends=[ape Rcpp]; }; - Tratamentos_ad = derive2 { name="Tratamentos.ad"; version="0.2.1"; sha256="1zrw0cdjh4h01rsxff9jplf0x2g41fy04sisrbz9fl5g7flx9bai"; depends=[crayon]; }; + Tratamentos_ad = derive2 { name="Tratamentos.ad"; version="0.2.2"; sha256="0w8bgkinnawdp3h6nhqypc7xg93y4nnk5hczijys713a4bv26gb2"; depends=[crayon]; }; TreatmentSelection = derive2 { name="TreatmentSelection"; version="2.1.1"; sha256="1pw64hx697jg2f1r2zd8y98g3ivj2gm8fnixcjfn4drsd0xixb4p"; depends=[binom ggplot2 survival]; }; TreeBUGS = derive2 { name="TreeBUGS"; version="1.4.7"; sha256="0cwhgphdk0zndnqx0qcq42zajhwvgs9myg9dmm6dnp0ik0g5syqa"; depends=[coda hypergeo logspline MASS Rcpp RcppArmadillo rjags runjags]; }; TreeDep = derive2 { name="TreeDep"; version="0.1.3"; sha256="0ja2hp9sxzybac6dqdsns5q1rj12swl240znsnsffg9mkvzhq6rl"; depends=[ggplot2 lubridate]; }; @@ -5404,7 +5423,7 @@ in with self; { UBCRM = derive2 { name="UBCRM"; version="1.0.1"; sha256="1h9f8wlxdgb67qqqnfhd9gfs4l2cq84vajhcb0psva0gwdd1yf6i"; depends=[]; }; UBL = derive2 { name="UBL"; version="0.0.7"; sha256="1zppc8mgmj4ymxfdvhqiirlf80wh65y58wqm92fgjdn7s06v5skf"; depends=[automap gstat MBA randomForest sp]; }; UCR_ColumnNames = derive2 { name="UCR.ColumnNames"; version="0.1.0"; sha256="1nwwq93f60r9aik51l7mzckg81f81nz5kgzynyzp5sm4y2wmpzwn"; depends=[]; }; - UCSCXenaShiny = derive2 { name="UCSCXenaShiny"; version="1.1.1"; sha256="0hjivd6d91j94nl2wd9y2dfzlf5dai4f66a85nxxmjzyvip3dj3w"; depends=[dplyr ezcox forcats ggplot2 ggpubr magrittr ppcor psych purrr shiny stringr tibble tidyr UCSCXenaTools]; }; + UCSCXenaShiny = derive2 { name="UCSCXenaShiny"; version="1.1.3"; sha256="04xbvc4f1w1xv9n75abrqbian01hn0wz4chaahdbz9ciikbx3pbx"; depends=[dplyr ezcox forcats ggplot2 ggpubr magrittr ppcor psych purrr shiny stringr tibble tidyr UCSCXenaTools]; }; UCSCXenaTools = derive2 { name="UCSCXenaTools"; version="1.4.7"; sha256="1s3x9vmvnb0g3fmrgjw636g3nhshbgkv0g2dyrk347bv7bdj52zg"; depends=[digest dplyr httr jsonlite magrittr readr rlang]; }; UComp = derive2 { name="UComp"; version="2.2.2"; sha256="024fmarngqmj8db7rkah2cnsix3m0zqz153j5585caij302v8rkl"; depends=[Rcpp RcppArmadillo]; }; UKFE = derive2 { name="UKFE"; version="0.2.0"; sha256="1v54qmqr05z64ls3vih0iinxax76vz3cas2b0sbgqxf0mgif07s9"; depends=[]; }; @@ -5480,7 +5499,6 @@ in with self; { VLF = derive2 { name="VLF"; version="1.0"; sha256="1il8zhm80mc22zj16dpsy4s6s9arj21l9ik0vccyrpnlr8ws3d3l"; depends=[]; }; VLMC = derive2 { name="VLMC"; version="1.4-3-1"; sha256="0cwfpxcj8g68j9z9fl66i0amj8ypf199iv3yyxzsmniqv4w5x4ar"; depends=[MASS]; }; VLTimeCausality = derive2 { name="VLTimeCausality"; version="0.1.3"; sha256="1a5v2yp2pmnx0h0k2kvpw0cpn1bwz3c68vwdj7sz8r85c7mw326d"; depends=[dtw ggplot2 RTransferEntropy tseries]; }; - VNM = derive2 { name="VNM"; version="7.1"; sha256="19qglcibb7r6jjz0n0piklwfv3hi4jphd6vmyfbm0ccjjkmn5nin"; depends=[Rcpp]; }; VOSONDash = derive2 { name="VOSONDash"; version="0.5.7"; sha256="1qivx5ddl9jsn6q6ic2w8jrczxlx23z087k5arfz2rixgj7rndyg"; depends=[data_table httpuv httr igraph lattice magrittr RColorBrewer shiny SnowballC systemfonts syuzhet textutils tm vosonSML wordcloud]; }; VSURF = derive2 { name="VSURF"; version="1.1.0"; sha256="1azfd4sb89mp27l86k293qj81x94gfiy1ihwnb6c558p8h69xsgf"; depends=[doParallel foreach randomForest ranger Rborist rpart]; }; VSdecomp = derive2 { name="VSdecomp"; version="0.1.1"; sha256="1vx68rhsxvi3kkrwr98hqhivhdmb9dm9rnmgspx74dskhkysjwbg"; depends=[ggplot2 Hmisc lfe reshape rlang]; }; @@ -5510,6 +5528,7 @@ in with self; { ViSiElse = derive2 { name="ViSiElse"; version="1.2.2"; sha256="1ay09dahlqnfrgf4gl4s45a4ahrk2xliagxqz5h826w2vzsawqcc"; depends=[chron colorspace ggplot2 Matrix reshape2 stringr]; }; VicmapR = derive2 { name="VicmapR"; version="0.1.8"; sha256="0lnpbbspsl1q4z2i4jmz7j3idqwdxrngpcavnppp68ajyz4i5xkr"; depends=[cli curl DBI dbplyr dplyr glue httr lubridate magrittr purrr rlang rvest sf xml2]; }; VineCopula = derive2 { name="VineCopula"; version="2.4.3"; sha256="05zajfncr9iyzpv98zw3ph2drxbnfjwjw8l244j49das6jkplwj2"; depends=[ADGofTest lattice MASS mvtnorm]; }; + VisitorCounts = derive2 { name="VisitorCounts"; version="1.0.0"; sha256="1i2msvr2mlwwlwp5zmr4i16svrbfix65ga9rsvc43gv7rg4ip7rd"; depends=[ggplot2 ggthemes Rssa tibble]; }; Visualize_CRAN_Downloads = derive2 { name="Visualize.CRAN.Downloads"; version="1.0.1"; sha256="0z2v2izn4aj3i6f5gh8r7pkrqpbb82bv9v4s4vqxgm066a51m4p2"; depends=[cranlogs htmlwidgets plotly]; }; VorteksExport = derive2 { name="VorteksExport"; version="0.1.8"; sha256="0r9wmd9bdarjkqmpwp85xz27nbyhjkcpxm8qb8bqjmxq4nds6nxx"; depends=[]; }; Voss = derive2 { name="Voss"; version="0.1-4"; sha256="056izh1j26vqjhjh01fr7nwiz1l6vwr5z4fll87w99nc5wc4a467"; depends=[fields]; }; @@ -5517,6 +5536,7 @@ in with self; { VulnToolkit = derive2 { name="VulnToolkit"; version="1.1.4"; sha256="01m8spmd4na7mxgnplnnq3n4pab9349z2dk44b455vcadll0fsdi"; depends=[plyr XML]; }; W2CWM2C = derive2 { name="W2CWM2C"; version="2.2"; sha256="0544wnyyv8glv4ljldmaqgynpshd5bvsqwsz9q1071dfshhxki1v"; depends=[colorspace wavemulcor waveslim]; }; W3CMarkupValidator = derive2 { name="W3CMarkupValidator"; version="0.1-6"; sha256="0nfay5nqss3zlw4nikj8h3zzlnjfxjch4pm3qky15qrcigrybrbl"; depends=[curl xml2]; }; + WA = derive2 { name="WA"; version="1.0"; sha256="0i6hkajfalwpvxmmzfl7nhk4x6hhrf0xqpgny8b1gk1hw05yv03m"; depends=[]; }; WACS = derive2 { name="WACS"; version="1.1.0"; sha256="09fmdlpb99q9dw17lwp0bwpklgvgiqq7bfs9ryx5r54m0niklr9d"; depends=[mclust mnormt mvtnorm tmvtnorm]; }; WARN = derive2 { name="WARN"; version="1.2-4"; sha256="18gfk9vqcqarj7j5i240wqv2dclg3csng4mih5izj40xaaxaf6q5"; depends=[MASS]; }; WASP = derive2 { name="WASP"; version="1.4.1"; sha256="1af2qqsq811bvcwns4i0kvy36xxi9pkdawwq2n75yd9dhpv5whav"; depends=[ggplot2 sp tidyr waveslim]; }; @@ -5535,7 +5555,7 @@ in with self; { WMWssp = derive2 { name="WMWssp"; version="0.4.0"; sha256="16m4hvjqdcpkvswvqwgm0pq9nm7vjrlqldzi4i69izlwccp37v47"; depends=[]; }; WPC = derive2 { name="WPC"; version="1.0"; sha256="0li502hwa4n945yfnilslyvl12ls66kazbfmxb4kkjbaf500mjp9"; depends=[msm survival]; }; WPKDE = derive2 { name="WPKDE"; version="0.1"; sha256="100vla11fbw16x5n4w4kbslz4n725v4x6j0hrxzrk99ryl0crmf6"; depends=[]; }; - WR = derive2 { name="WR"; version="0.1.1"; sha256="153f64b2zsykl5f8iwxlcqby96ag1an4w8lhs7dxx72gy5k4vs6c"; depends=[survival]; }; + WR = derive2 { name="WR"; version="1.0"; sha256="10813dzq3pn354g5x7hczi6aq61kmfrl8y4wc005bsxj0ipz0a06"; depends=[cubature gumbel survival]; }; WRI = derive2 { name="WRI"; version="0.1.0"; sha256="09klq35q1b9c0v86mhx1klqv41jx0saivhh7a8pq7b3b9f8678zb"; depends=[CVXR expm fdadensity fdapace ggplot2 gridExtra locfit locpol modeest mvtnorm Rcpp RcppArmadillo Rfast rlang]; }; WRS2 = derive2 { name="WRS2"; version="1.1-3"; sha256="0nnx0hzdijh9kdh69z72720z30ih0fbmn3kqycgbqxlk99wddakh"; depends=[MASS mc2d plyr reshape]; }; WRSS = derive2 { name="WRSS"; version="3.0"; sha256="16a7i6glgl5cshsn3w7gxviybmka06ylw5znz94gigyx0vhgv97p"; depends=[GGally ggplot2 Hmisc network nloptr]; }; @@ -5552,7 +5572,7 @@ in with self; { WaveletComp = derive2 { name="WaveletComp"; version="1.1"; sha256="07w2aa0jiflvxyqhgh48705hg8hjspd103jd00i2pcw2v42hwmf8"; depends=[]; }; WaveletGARCH = derive2 { name="WaveletGARCH"; version="0.1.1"; sha256="0dj5bmvzfhj1cpn8qi2ax3iipr7jlq0f9vk4b1idqgh5dmdi8lh6"; depends=[FinTS forecast fracdiff rugarch wavelets]; }; WaverR = derive2 { name="WaverR"; version="1.0"; sha256="084fhzggzm075w6wp2lqd3j0an21idhw8z5l8ynz4y96mpmn204a"; depends=[kimisc MASS]; }; - WeMix = derive2 { name="WeMix"; version="3.1.9"; sha256="0d9l0225nzx96xvc0n0mjkhnj7dkk1j69glxxpxn393b5afllyln"; depends=[lme4 Matrix minqa NPflow numDeriv Rmpfr statmod]; }; + WeMix = derive2 { name="WeMix"; version="3.2.0"; sha256="1wcfk566w4jc39db5yz8ib2qai6dfpm21ywqvlcp97viwdmnkqfr"; depends=[lme4 Matrix minqa NPflow numDeriv Rmpfr statmod]; }; WebGestaltR = derive2 { name="WebGestaltR"; version="0.4.4"; sha256="1rgf9s80hk35baiknrwgnqnhxssrcxdansgpvpyhqv07bqd472nn"; depends=[apcluster doParallel doRNG dplyr foreach httr igraph jsonlite Rcpp readr rlang svglite whisker]; }; WebPower = derive2 { name="WebPower"; version="0.6"; sha256="1gw6191v9sgycis3vyjznaaiyhmp0j23h9k8g8adchpyss7017ab"; depends=[lavaan lme4 MASS PearsonDS]; }; WeibullFit = derive2 { name="WeibullFit"; version="0.1.0"; sha256="1a80gcqbmvb1rz2dr2syy16wn6ixjn6l40gayys9zy8302hky9ir"; depends=[e1071 FAdist glue kSamples mixdist optimx R_methodsS3 R_oo sqldf xtable]; }; @@ -5566,9 +5586,9 @@ in with self; { WgtEff = derive2 { name="WgtEff"; version="0.1.2"; sha256="1z8pndv43ssgmzldwaq0088lmf1g2mkmrbmzyaismcpngn9fqxsk"; depends=[]; }; WhatIf = derive2 { name="WhatIf"; version="1.5-10"; sha256="19w5qw123iahrx96379lrx8i7v3x2ck5dhklf58iw0dmj4pfy2kg"; depends=[lpSolve pbmcapply]; }; WhiteStripe = derive2 { name="WhiteStripe"; version="2.4.0"; sha256="08lywd8jwx6cw7dqm7zxj291gifacymlk8ikjad9aw2f9jm6kap0"; depends=[mgcv neurobase oro_nifti]; }; - WienR = derive2 { name="WienR"; version="0.2-2"; sha256="0478fbhh8h175wkz6bigxccdrq2lv5kx7zfkgkk80rwj36zm7882"; depends=[]; }; + WienR = derive2 { name="WienR"; version="0.3-0"; sha256="1lhjcyn8qh23iq0v18m0hbq94nqrx12lsd49shj6wf3x220vf0d2"; depends=[]; }; WikidataQueryServiceR = derive2 { name="WikidataQueryServiceR"; version="1.0.0"; sha256="1bl1nbhbmss8cj9ni7plsjs996n4rwqv6h8bh1zj4whs8z4fw50f"; depends=[dplyr httr jsonlite purrr ratelimitr readr rex WikipediR]; }; - WikidataR = derive2 { name="WikidataR"; version="2.3.1"; sha256="1nmj1qi2v1a9mg74k9603i4dva9fcby6wczs7sgaw2qw1hb9sd6x"; depends=[crayon dplyr Hmisc httr jsonlite pbapply progress readr stringr tibble WikidataQueryServiceR WikipediR]; }; + WikidataR = derive2 { name="WikidataR"; version="2.3.3"; sha256="120833b7zyq1rhmn9c8iv0j6br60af7gbn5lc4dil55qhh2lp9rx"; depends=[crayon dplyr Hmisc httr jsonlite pbapply progress readr stringr tibble WikidataQueryServiceR WikipediR]; }; WikipediR = derive2 { name="WikipediR"; version="1.5.0"; sha256="1w4ggq42vlq7zbrz3v9ripz9yscbd8m8as60q7cplpxn9zqfdl7q"; depends=[httr jsonlite]; }; WikipediaR = derive2 { name="WikipediaR"; version="1.1"; sha256="0fxk247jb82g0f3nmwraa4kvdpjxy5s4dcyzj9vkjw2lq8by3l0h"; depends=[httr XML]; }; WilcoxCV = derive2 { name="WilcoxCV"; version="1.0-2"; sha256="1kbb7ikgnlxybmvqrbn4cd8xnqrkwipk4xd6yja1xsi39a109xzl"; depends=[]; }; @@ -5612,7 +5632,7 @@ in with self; { ZIBBSeqDiscovery = derive2 { name="ZIBBSeqDiscovery"; version="1.0"; sha256="12g9rga9z6318ni6x6q9hdqlgl93y2xn8vf3gc6sm97fz8pliswx"; depends=[mcc]; }; ZIBseq = derive2 { name="ZIBseq"; version="1.2"; sha256="13rjy4jl9wil6hhpra4qmdis0iyqxchzsf9l7q6r0dz1f7dpd2nq"; depends=[gamlss gamlss_dist nlme]; }; ZIM = derive2 { name="ZIM"; version="1.1.0"; sha256="0scyfjn4ilsvha3x41c3b8bcfi31hlhwm77wn2a8hj5dsvnnmzig"; depends=[MASS]; }; - ZIPBayes = derive2 { name="ZIPBayes"; version="1.0.1"; sha256="1azpxqvphcwcvvxh81124bc6crqlvxi81xddnrc9rvmbirwnxss4"; depends=[MASS Rcpp]; }; + ZIPBayes = derive2 { name="ZIPBayes"; version="1.0.2"; sha256="0j56smgf44fki70jc6aypksbl70pyppc6s3xv82yrq5rndym077k"; depends=[MASS Rcpp]; }; ZIPFA = derive2 { name="ZIPFA"; version="0.8.1"; sha256="134pkdn4slhiv27rdkkmh2z7xch30ns0jhzxgd7r05bky0z1iri1"; depends=[doParallel foreach Matrix optimx trustOptim]; }; ZIprop = derive2 { name="ZIprop"; version="0.1.1"; sha256="1gvf6z7mx543a0hiqcknwhkplqa3mfmw3swi8n9vma10bqmgysx7"; depends=[data_table purrr rgenoud]; }; ZRA = derive2 { name="ZRA"; version="0.2"; sha256="1sx1q5yf68hhlb5j1hicpj594rmgajqr25llg7ax416j0m2rnagi"; depends=[dygraphs forecast]; }; @@ -5625,11 +5645,11 @@ in with self; { aCRM = derive2 { name="aCRM"; version="0.1.1"; sha256="0kzp568hd9c9a9qgniia5s5gv0q5f89xfvvwpzb197gqhs3x092v"; depends=[ada dummies kernelFactory randomForest]; }; aGE = derive2 { name="aGE"; version="0.0.9"; sha256="17niwni6sd2mdvhskq6vfwplynh67hwq9ijrlgjvhkcslpb2ilp3"; depends=[MASS nlme survey]; }; aLFQ = derive2 { name="aLFQ"; version="1.3.6"; sha256="0kphpvhz36859f5l0k8mbf59g9871mynbs4ybdi0h5nm2cdjy9vx"; depends=[bio3d caret data_table lattice plyr randomForest reshape2 ROCR seqinr]; }; - aMNLFA = derive2 { name="aMNLFA"; version="1.0.0"; sha256="1wjv4ka683asj5j4amymgbc56qn136nkyjfbb7szs0gfp1jf1qig"; depends=[devtools dplyr ggplot2 gridExtra MplusAutomation plyr reshape2 stringr]; }; + aMNLFA = derive2 { name="aMNLFA"; version="1.1.0"; sha256="00agirwpz0rw4wfqgng97ikyz97sgmvdymr7m4c69ik3b9a6sfxl"; depends=[devtools dplyr ggplot2 gridExtra MplusAutomation plyr reshape2 stringi stringr]; }; aPCoA = derive2 { name="aPCoA"; version="1.2"; sha256="0b5fqxay918if5pfd6xgbzir5myivc3jar2p2is8azrykrr1v2cr"; depends=[ape car cluster randomcoloR vegan]; }; aRchi = derive2 { name="aRchi"; version="1.0.5"; sha256="1sn321d2qh7vvwfbr62lg3c5ggg8df0w0q6mwcg5pr3jqhiif076"; depends=[circular data_table DiceKriging dplyr FNN gtools lidR pkgcond plyr progress rgl stringr]; }; aRpsDCA = derive2 { name="aRpsDCA"; version="1.1.1"; sha256="0ghg43rd6bnv4jp8pkpd1ixp5l6kq5pr0mxq61q24s24g0m3s64p"; depends=[]; }; - aRtsy = derive2 { name="aRtsy"; version="0.1.4"; sha256="0b7wg4jhykxra602g49rqx4mppnfjy2iannhi38idlz9h7f3wbl4"; depends=[dplyr e1071 ggplot2 kknn randomForest Rcpp RcppArmadillo]; }; + aRtsy = derive2 { name="aRtsy"; version="0.1.5"; sha256="1acip7437jj86rkdnx8f4cl6flqzbfb31xhwjskc17p30awz9518"; depends=[e1071 ggplot2 kknn randomForest Rcpp RcppArmadillo]; }; aRxiv = derive2 { name="aRxiv"; version="0.5.19"; sha256="0rik0jkh1xi9fizzw46xmcw139g6nla072p7f8jgvzbhp7k58ba2"; depends=[httr XML]; }; aSPC = derive2 { name="aSPC"; version="0.1.2"; sha256="1q301rw7dax5v58srg4jlcam1qq2igkaj7kg8wlnlml0hsck4c4a"; depends=[energy mvtnorm]; }; aSPU = derive2 { name="aSPU"; version="1.50"; sha256="0rh21dj5913nxhdndqfhxvm6mvwnacraf7l3bac09awm7cfhk511"; depends=[fields gee MASS matrixStats mvtnorm]; }; @@ -5655,15 +5675,15 @@ in with self; { abnormality = derive2 { name="abnormality"; version="0.1.0"; sha256="1fzfskl9akl06nliy8hkv2a0pznpj8pwcypg3gj5r2nzvr3kan9v"; depends=[MASS Matrix]; }; abodOutlier = derive2 { name="abodOutlier"; version="0.1"; sha256="1pvhgxmh23br84r0fbmv7g53z2427birdja96a67vqgz18r3fdvj"; depends=[cluster]; }; abstractr = derive2 { name="abstractr"; version="0.1.0"; sha256="1ymwp7syrynwd4i8aj2x5n8jdi9d96fjzl6jb09n0bnr5fgl7vig"; depends=[colourpicker emojifont ggplot2 gridExtra rintrojs shiny shinythemes]; }; - abtest = derive2 { name="abtest"; version="0.2.2"; sha256="1ak0m4jd1grriwg4pn3aqf1468qma6rjn5kqjh8izx7zl29jd07v"; depends=[Matrix mvtnorm plotrix qgam RColorBrewer Rcpp sn truncnorm]; }; - academictwitteR = derive2 { name="academictwitteR"; version="0.2.1"; sha256="1xwkzspb1j87i8zy1r7gjg22cb8ay87v3l15nnvapzc9sg0dk1vp"; depends=[dplyr httr jsonlite lubridate magrittr purrr rlang tibble tidyr tidyselect usethis]; }; + abtest = derive2 { name="abtest"; version="1.0.1"; sha256="0jz2ry5364p8h8xlk5a5sycn8xlpxd1iasfg99bcr4jqzd92jfqg"; depends=[Matrix mvtnorm plotrix qgam RColorBrewer Rcpp sn truncnorm]; }; + academictwitteR = derive2 { name="academictwitteR"; version="0.3.0"; sha256="07fmkrh90ji04qkcad6f3xk4ndin38w1w5ywygv588in1psqfjci"; depends=[dplyr httr jsonlite lubridate magrittr purrr rlang tibble tidyr tidyselect usethis]; }; acc = derive2 { name="acc"; version="1.3.3"; sha256="1ii2vm47djxbixa75h690q1s2f9m9x6i8nkygik93j6dayr6kr1m"; depends=[circlize DBI ggplot2 iterators mhsmm nleqslv PhysicalActivity plyr R_utils Rcpp RcppArmadillo RSQLite zoo]; }; accSDA = derive2 { name="accSDA"; version="1.0.0"; sha256="0sgxy5y8kkc1n35657kifwfjsba7y5m1vbr7rkk5lmbpkzahqm61"; depends=[ggplot2 ggthemes gridExtra MASS rARPACK sparseLDA]; }; accelerometry = derive2 { name="accelerometry"; version="3.1.2"; sha256="13xzrwhr4i1nj9c8vrmfdg2rmrc8n446iihcyxmy99sm99hpzyip"; depends=[dvmisc Rcpp]; }; accelmissing = derive2 { name="accelmissing"; version="1.4"; sha256="1nql9inx6azdzi3z4sfm2vdml2mms6krl8wzlf1dn1c97ahn57fy"; depends=[mice pscl]; }; accept = derive2 { name="accept"; version="0.8.3"; sha256="0qn4lm6bk0z2iijwsfbymx1c9y39988fw124ncgmlrgw5kv80b7x"; depends=[dplyr reldist]; }; accrual = derive2 { name="accrual"; version="1.3"; sha256="11clm9s5c5518nmp6hd6pjnp0s28y92b2i2x0xgj4j5g816p4j3z"; depends=[fgui SMPracticals tcltk2]; }; - accucor = derive2 { name="accucor"; version="0.2.4"; sha256="1vyppzskd5bw4mb0z8ilzh0j7jf00jr5wk5mykv7iwibwlscm5xx"; depends=[CHNOSZ dplyr gsubfn nnls readr readxl rlang stringr tibble writexl]; }; + accucor = derive2 { name="accucor"; version="0.3.0"; sha256="1byhfh9lskgpi8sx6kb7prh88a2jglrjpq206rmh98hqd3r23n5j"; depends=[CHNOSZ dplyr nnls readr readxl rlang stringr tibble writexl]; }; ace2fastq = derive2 { name="ace2fastq"; version="0.6.0"; sha256="09kk3yyqnr2xp820g0p3aai9a21figigjr9lxkr3zjq2d8gzwfic"; depends=[stringr]; }; aceEditor = derive2 { name="aceEditor"; version="1.0.1"; sha256="1qdxs20si1smjn24dlgq46x6qwjdwsa0f5lzh1vrbgv4kk9j1rfb"; depends=[htmltools htmlwidgets reactR rstudioapi]; }; acebayes = derive2 { name="acebayes"; version="1.10"; sha256="11bffz430gdfdaxjx3simig66vhynmx6l1ylac4q2shcmj52nx73"; depends=[compare lhs randtoolbox Rcpp RcppArmadillo]; }; @@ -5705,6 +5725,7 @@ in with self; { adaptiveGPCA = derive2 { name="adaptiveGPCA"; version="0.1.2"; sha256="0bb6hw77dfa66b12xyazlp992gwjb1plylixlmq4cv4yjhnl9n5z"; depends=[ape ggplot2 phyloseq shiny]; }; adaptivetau = derive2 { name="adaptivetau"; version="2.2-3"; sha256="1jficl4yidix35q8yqs3pcv813wq3pg4hpw4ah4dprvg95bl7wwx"; depends=[]; }; adaptsmoFMRI = derive2 { name="adaptsmoFMRI"; version="1.1"; sha256="1h79gh1bd6s2xhwf4whh72wf2cz4di2p8dnlf6192mfg108qc6nw"; depends=[coda Matrix MCMCpack mvtnorm spatstat]; }; + adass = derive2 { name="adass"; version="1.0.0"; sha256="1g702pg335q9jwgdygb7n364ibad6z27fcd9yfim8gi4fcpjwlkq"; depends=[fda matrixcalc mvtnorm plot3D Rfast SparseM]; }; add2ggplot = derive2 { name="add2ggplot"; version="0.3.0"; sha256="0c94i1cfp2pvplvxmfvvz2fyj026r1jnax05mrzrc7ppnqzy25y0"; depends=[ggplot2 magick magrittr RColorBrewer zeallot]; }; addScales = derive2 { name="addScales"; version="1.0-1"; sha256="1bw4ljyyswdhqyir9i6lj0mg9lm6ry4zpqp2h6w2bpk37rvs1w38"; depends=[lattice]; }; addhaz = derive2 { name="addhaz"; version="0.5"; sha256="1709jq9rp5lhqk0qpk8zkdwzhcv1bcach8mm7yiz7hzcc1mgxb12"; depends=[boot MASS Matrix]; }; @@ -5739,7 +5760,7 @@ in with self; { adjustedcranlogs = derive2 { name="adjustedcranlogs"; version="0.1.0"; sha256="08apfvpqvnnalx230p4qf5ckrwm1sgzras4zfrysgym5d4map9ci"; depends=[cranlogs dplyr lubridate rvest xml2]; }; adklakedata = derive2 { name="adklakedata"; version="0.6.1"; sha256="1lzj3ib4bgfkq5lq12n47pwc52h7k35xbbwj6brwsgx1gd4fx3x6"; depends=[httr rappdirs]; }; adlift = derive2 { name="adlift"; version="1.4-1"; sha256="14q7fnhlqvxdhnfjhdhfmadz241srplbm069a7ybbsql21cphpf3"; depends=[EbayesThresh]; }; - admisc = derive2 { name="admisc"; version="0.19"; sha256="0gyk0yazdg5gb3m5ln9m6mv9pv2klb2in79gnc2vzq8ld7cc82vw"; depends=[]; }; + admisc = derive2 { name="admisc"; version="0.20"; sha256="1ycarp95msxlcnidblvrkqhwhjpxlqwd8qvll9zdlxcqg1n117lf"; depends=[]; }; admix = derive2 { name="admix"; version="0.3.2"; sha256="0si2avjqw6rmv2ndsj1ppmqkafnsjx06m2h4jxfrwf2kxfp2rrn1"; depends=[fdrtool Iso latex2exp MASS orthopolynom pracma Rcpp]; }; admixr = derive2 { name="admixr"; version="0.9.1"; sha256="0wszpzs53cbnha13g2ldpq6z5ndw2v2xgrzadqkjm3hsp6akv4bl"; depends=[dplyr magrittr readr rlang stringr tibble]; }; admmDensestSubmatrix = derive2 { name="admmDensestSubmatrix"; version="0.1.0"; sha256="1a5lfm10aj6wdjibdnmffn75zvy6x69w8nqcx2i23gxg6v0xlqcl"; depends=[Rdpack]; }; @@ -5774,10 +5795,10 @@ in with self; { agricolaeplotr = derive2 { name="agricolaeplotr"; version="0.2.2"; sha256="1xrsn9afdqzczaqam0aygm19vpgbq9aqh5b5qr9awj747sihpxjp"; depends=[agricolae ggplot2 rmarkdown]; }; agridat = derive2 { name="agridat"; version="1.18"; sha256="0r3806inanb49snnliq1k2li40f3yl73h37apngfhk0fw2d46fq1"; depends=[]; }; agriwater = derive2 { name="agriwater"; version="1.0.1"; sha256="1mssd0nxj8ayc3b2qcc7qzx93cnwnlxrnhn3rdknxc8iixkf40l8"; depends=[raster rgdal sp]; }; - agrmt = derive2 { name="agrmt"; version="1.42.7"; sha256="00vhwlz6vf2p3x51arxngd0vzgw8mb9fi8dq0b2lvqbpqqv6d071"; depends=[]; }; + agrmt = derive2 { name="agrmt"; version="1.42.8"; sha256="1czxcyqrmcpjh4h77p9c6gb63aj0mi1b8cdxp3q6r0k7dy8db7ad"; depends=[]; }; agrostab = derive2 { name="agrostab"; version="0.1.0"; sha256="0mcskv3144j594wqljzn5pwbhkxh6sb76b1c2wabzjvi61zrapiv"; depends=[dplyr ggplot2 rlang]; }; agsemisc = derive2 { name="agsemisc"; version="1.3-1"; sha256="1905q35jgjhghlawql43yh296kbpysp927x3hj750yshz5zayzyr"; depends=[lattice MASS]; }; - agtboost = derive2 { name="agtboost"; version="0.9.2"; sha256="1zprx5w658c16g2c2mi1mr3nf030yghzjgmxcafjkzx601yrn8if"; depends=[Rcpp RcppEigen]; }; + agtboost = derive2 { name="agtboost"; version="0.9.3"; sha256="1z2ys4cn859vas3q1if50k46cryn7wwy1pjqbc8n9dhdn5zxn3sk"; depends=[Rcpp RcppEigen]; }; ahMLE = derive2 { name="ahMLE"; version="1.18"; sha256="1yf8v2im13lsa6qadxws9cxvqf0fq17s27ran9lr1bbmxh84prpr"; depends=[invGauss Matrix Rcpp RcppArmadillo survival]; }; ahaz = derive2 { name="ahaz"; version="1.14"; sha256="1z7w5rxd5cya7kxhgxqvn72k87y33ginxra9g7j9wrfs5jgx6kvx"; depends=[Matrix survival]; }; ahnr = derive2 { name="ahnr"; version="0.3.1"; sha256="1g8m3q108ricfyn4fjjaihpr93xz7fm2sfzg3i0fz1n1i703jwm8"; depends=[ggplot2 magrittr matrixcalc pdist pracma purrr visNetwork]; }; @@ -5885,14 +5906,15 @@ in with self; { antaresEditObject = derive2 { name="antaresEditObject"; version="0.3.0"; sha256="04rdq3kbliac1iaxqflf3qhh58qgl9pxb2qh44wkknb91ga0845x"; depends=[antaresRead assertthat data_table doParallel pbapply whisker]; }; antaresProcessing = derive2 { name="antaresProcessing"; version="0.18.1"; sha256="1dlq850xqh9534ws88ma3vv5r79cbabn6r6a2jmicxx116s7wjrz"; depends=[antaresRead data_table]; }; antaresRead = derive2 { name="antaresRead"; version="2.2.9"; sha256="1g91fm614q3v5i5v6smp70fipya9rlcdshqixcsjniqcwvpvb01c"; depends=[bit64 data_table doParallel httr jsonlite lubridate pbapply plyr shiny stringr]; }; - antaresViz = derive2 { name="antaresViz"; version="0.16"; sha256="0iczcawyj2rf0vxirkbprcsl43y62dhavw7ky50b6c2s5pi3mjzw"; depends=[antaresProcessing antaresRead assertthat data_table dygraphs geojsonio htmltools htmlwidgets leaflet leaflet_minicharts lubridate manipulateWidget plotly rAmCharts raster rgeos shiny sp spMaps webshot]; }; - anthro = derive2 { name="anthro"; version="0.9.4"; sha256="0blsfz3ckizkg4r4i3ib6b4yh40krcy8133v32f3yc220g2g2za9"; depends=[survey]; }; + antaresViz = derive2 { name="antaresViz"; version="0.17"; sha256="18f398qvy88w9rlkd08h5gvk7vwh349cjxi4pa59s5fs4ihhmdd2"; depends=[antaresProcessing antaresRead assertthat data_table dygraphs geojsonio htmltools htmlwidgets leaflet leaflet_minicharts lubridate manipulateWidget plotly rAmCharts raster rgeos shiny sp spMaps webshot]; }; + anthro = derive2 { name="anthro"; version="1.0.0"; sha256="169h2vhdd2kxh4228lx1ab3fipixvka4686ngx6h8g15li9828s9"; depends=[survey]; }; + anthroplus = derive2 { name="anthroplus"; version="0.9.0"; sha256="1wnj2idgdnh2gdw34x40adijf2sxp3k72j45pqqxg4aqc1wrvvv1"; depends=[anthro]; }; anticlust = derive2 { name="anticlust"; version="0.5.6"; sha256="1f5z05p5fwfgcj4vzg6kg9vihamcdha74yyn9c04m4kydyngnm85"; depends=[Matrix RANN]; }; antitrust = derive2 { name="antitrust"; version="0.99.25"; sha256="0f4alzr4nmjhxwk3c6mi5vrs2i20dambpc9zfkxf04rxbcw2znvy"; depends=[BB numDeriv]; }; antiword = derive2 { name="antiword"; version="1.3"; sha256="034znb0g9wwb8gi1r3z75v3sbb4mh83qrc4y8mbfx5lbgh8zhj6j"; depends=[sys]; }; anyLib = derive2 { name="anyLib"; version="1.0.5"; sha256="1x9x58hhkkwdskmgdjv94ynh811n9w0752hh4214adl1qpn576vm"; depends=[BiocManager curl devtools httr withr]; }; anybadger = derive2 { name="anybadger"; version="0.1.0"; sha256="1aa09v5k5nlvhlir8saa5gnrq7cb1djbdc8y85cjgb3skay94hzv"; depends=[config glue magrittr purrr R6]; }; - anyflights = derive2 { name="anyflights"; version="0.3.1"; sha256="08x4412xbmiisizdiby6b9xkhrlsag9hrmj681wpm6fm2bpk0q6y"; depends=[curl dplyr glue httr lubridate progress purrr readr roxygen2 stringr usethis vroom]; }; + anyflights = derive2 { name="anyflights"; version="0.3.2"; sha256="0531cqamk8sqb2df3brwyak2rs65mc5r3vsywc6xrr1nlaw62zd6"; depends=[curl dplyr glue httr lubridate progress purrr readr roxygen2 stringr usethis vroom]; }; anytime = derive2 { name="anytime"; version="0.3.9"; sha256="0jjpqynai5nd7mfy1smb44356f3d5bmpxhs1i9x9jw5c959c35hh"; depends=[BH Rcpp]; }; ao = derive2 { name="ao"; version="0.1.4"; sha256="0phlnvh05qr5rig40virypl1k2inl0c4c9mmkfbbw2089ryc9gq0"; depends=[]; }; aod = derive2 { name="aod"; version="1.3.1"; sha256="1g03ajhs6bid80i83xn3917abhymzgrydqx86wxxpkqga018hb85"; depends=[]; }; @@ -5906,7 +5928,7 @@ in with self; { apa = derive2 { name="apa"; version="0.3.3"; sha256="1nvhl5fqramsdrkpl1nmgr1vmki5c1lkdi1kkx7ihf0cz35f7c2a"; depends=[dplyr magrittr MBESS purrr rmarkdown stringr tibble]; }; apaTables = derive2 { name="apaTables"; version="2.0.8"; sha256="0jy6x0z9ivqqkjihqhyg3fxyghqa9gs6q2bpxzjdnbcb3kq151vd"; depends=[boot broom car dplyr MBESS tibble]; }; apaText = derive2 { name="apaText"; version="0.1.1"; sha256="1r217k60w027i63nbj24b1rm37m4qf7a6iirc941s945babkxcmb"; depends=[dplyr]; }; - apache_sedona = derive2 { name="apache.sedona"; version="1.1.0"; sha256="09g4h9fpymh3kckclhmhp359346pi7dbva8p2zpvnbgy818nil77"; depends=[DBI dbplyr dplyr rlang sparklyr]; }; + apache_sedona = derive2 { name="apache.sedona"; version="1.1.1"; sha256="1bsxyb1303s907w5h7m7wacgsjjgb1y35zvkpmn1ymz0zsfbad4p"; depends=[DBI dbplyr dplyr rlang sparklyr]; }; apc = derive2 { name="apc"; version="2.0.0"; sha256="0vh6iyxm46k8sfa1xgz0y6m619snnm8s072kml5qgiiw5s7bqnpq"; depends=[AER car ChainLadder ggplot2 ISLR lattice lmtest plm plyr reshape survey]; }; apcf = derive2 { name="apcf"; version="0.1.7"; sha256="071gax2w9b0l74vls59y6syg2swiagz5xkab1x2wmmxk16y49l1s"; depends=[Rcpp]; }; apcluster = derive2 { name="apcluster"; version="1.4.8"; sha256="0lzf2jqm56i74wif6x5sw3j0w2qc4sni49zq2fgbl89b7lwkvchj"; depends=[Matrix Rcpp]; }; @@ -5965,7 +5987,7 @@ in with self; { argonDash = derive2 { name="argonDash"; version="0.2.0"; sha256="1wykr7y5375g1nb18ynybccxmd948xrr0gdwxxqsfjf782vlgd2d"; depends=[argonR htmltools shiny]; }; argonR = derive2 { name="argonR"; version="0.2.0"; sha256="15hlvansqnky9bnq4r7xza3hb1hzylmhz8117wxz9lxa1wiky2is"; depends=[htmltools rstudioapi]; }; argosfilter = derive2 { name="argosfilter"; version="0.63"; sha256="0rrc2f28hla0azw90a5gk3zj72vxhm1b6yy8ani7r78yyfhgm9ig"; depends=[]; }; - argparse = derive2 { name="argparse"; version="2.1.2"; sha256="1cz5qlxw3v8smd5vb00wlzy02mx5i0infm5hnq55hnakffd3b5wr"; depends=[findpython jsonlite R6]; }; + argparse = derive2 { name="argparse"; version="2.1.3"; sha256="0vm6nrzl6rsq2qw3km3i4s92kq9phs3cbxzv3i8hlyld9ajk3nmf"; depends=[findpython jsonlite R6]; }; argparser = derive2 { name="argparser"; version="0.7.1"; sha256="0xcl0ivsbc4iw8s7027q4cx68j6s5lihbby0xa9pmlv4wjmcvdr6"; depends=[]; }; ari = derive2 { name="ari"; version="0.3.5"; sha256="03w99c918jp23d0kl26vx4m7xjicpgwl5rhn9d0fsm4kvv7j87li"; depends=[hms progress purrr rmarkdown rvest text2speech tuneR webshot xml2]; }; ariExtra = derive2 { name="ariExtra"; version="0.3.1"; sha256="1j8x2m9799i5kxrvsf2cjrffb5p6r4zjrr0khsy4i22xn7kyl8nf"; depends=[ari docxtractr httr jsonlite magrittr mime pdftools rmarkdown rvest text2speech tuneR xml2 yaml]; }; @@ -5984,16 +6006,16 @@ in with self; { arrApply = derive2 { name="arrApply"; version="2.1"; sha256="0qy7iwi580rrf3sycsbv6qgxsqcdy9pdbnkdrx81j68qni9iw737"; depends=[Rcpp RcppArmadillo]; }; arrangements = derive2 { name="arrangements"; version="1.1.9"; sha256="0nrlyxgn6667l2rb1q5rvps1anld9aq88qqr3ch2i6zchnqxrdg9"; depends=[gmp R6]; }; arrayhelpers = derive2 { name="arrayhelpers"; version="1.1-0"; sha256="02rl530qxi1idiqpmzg5wr9vl5c7phizhpj64k5pn8xq9zfxbpaz"; depends=[svUnit]; }; - arrow = derive2 { name="arrow"; version="6.0.0.2"; sha256="110ixq59wgiwwp7ziqhw124qcsdl7la2nlx9gvzk7jhyhn98d03n"; depends=[assertthat bit64 purrr R6 rlang tidyselect vctrs]; }; + arrow = derive2 { name="arrow"; version="6.0.1"; sha256="14fghz9xijcrck0c65crvfidgyhgzy9b2apwmg7qrgn2sy09xm0p"; depends=[assertthat bit64 purrr R6 rlang tidyselect vctrs]; }; ars = derive2 { name="ars"; version="0.6"; sha256="0zs1rk3i7pc9wcvxrvjcls194mfbvmkz7cb6pwd1cm3fzjwsyxsp"; depends=[]; }; arse = derive2 { name="arse"; version="1.0.0"; sha256="0ssaalc058m09gfcr1n0s729rx2plia3zkhlynj67drclyvhyb0i"; depends=[dplyr pracma]; }; arsenal = derive2 { name="arsenal"; version="3.6.3"; sha256="0qvs3ld28djnjnggdhqjwq8sbv8zz322qahlvf7dnx35yqf6xkms"; depends=[knitr]; }; artfima = derive2 { name="artfima"; version="1.5"; sha256="1nqsq9fsqk9kag9n7i2r9yvf578nkdfrkkv7qy8650prka0jca2p"; depends=[gsl ltsa]; }; - arules = derive2 { name="arules"; version="1.7-0"; sha256="0l7bjaqq0r9qcp1widsw8bvmy673rs4bij1difdphr8xs9yijswz"; depends=[generics Matrix]; }; - arulesCBA = derive2 { name="arulesCBA"; version="1.2.0"; sha256="1d72lrfbyr2g7n6r04vyaqs3pvs3jhkfr4yfgn2fj690q3ff0qr3"; depends=[arules discretization glmnet Matrix]; }; + arules = derive2 { name="arules"; version="1.7-1"; sha256="0zzwr1mg92ha5l6razdb04da8ik3z3k74rm0rah44l1j2a6d30sk"; depends=[generics Matrix]; }; + arulesCBA = derive2 { name="arulesCBA"; version="1.2.1"; sha256="1lsy1h37rb3jinh26d668z1v04rh5m1gkfhl3wfkg546hbpq4644"; depends=[arules discretization glmnet Matrix]; }; arulesNBMiner = derive2 { name="arulesNBMiner"; version="0.1-8"; sha256="0kqvi7dzq3mrn6cq22gwxh4p54mgfn9s1sd2cfnbw1f9zp078lsn"; depends=[arules rJava]; }; arulesSequences = derive2 { name="arulesSequences"; version="0.2-25"; sha256="0vd5fgi1b45kgfm5yi9ygaxm0sb8qarz5lsknwh5gla3h0k7l66b"; depends=[arules]; }; - arulesViz = derive2 { name="arulesViz"; version="1.5-0"; sha256="188zbmvhvq0cllgbhi16ic93ka9mk96ssdc8x24kmxqvq5zdmdh4"; depends=[arules colorspace dplyr DT ggnetwork ggplot2 igraph plotly scatterplot3d seriation tibble tidyr vcd visNetwork]; }; + arulesViz = derive2 { name="arulesViz"; version="1.5-1"; sha256="06mqdqg5amcrb75lf77wilb9v8c7f50b54p0pk76q0jvirycqrzc"; depends=[arules dplyr DT ggplot2 ggraph igraph plotly scatterplot3d seriation tibble tidyr vcd visNetwork]; }; asVPC = derive2 { name="asVPC"; version="1.0.2"; sha256="07nfwr0lsfpwgfdgzcdn1svw8dnjfni5ga9q77yjd1bj0wf76ci2"; depends=[ggplot2 plyr]; }; asaur = derive2 { name="asaur"; version="0.50"; sha256="0c1rgic76w3i2xhna7i52lyc0p01s5b1mxyn55gqw6i19v9mq0b3"; depends=[]; }; asbio = derive2 { name="asbio"; version="1.7"; sha256="0kchcpjv4hk66svr52x5d95gqrs5m64np65hjdlqclhjj7h3sjr1"; depends=[combinat deSolve gWidgets2 gWidgets2tcltk lattice multcompView mvtnorm pixmap plotrix scatterplot3d]; }; @@ -6062,7 +6084,7 @@ in with self; { atmcmc = derive2 { name="atmcmc"; version="1.0"; sha256="05k69b5wlysz3kh0yiqvshgvr0nyz34zkvn6bjs30cwz7s9j21pn"; depends=[]; }; atmopt = derive2 { name="atmopt"; version="0.1.0"; sha256="1h79ngq1236gz4w29fs3nj46a3m1x8a28z3xnhc6wn3a46cf8zzi"; depends=[DoE_base gtools hierNet]; }; atsd = derive2 { name="atsd"; version="1.2.0"; sha256="0jan8r5f2r3l2xpdf9rrv4smkr2l645rfdgdfjb1xa54jd3pqvqs"; depends=[httr RCurl]; }; - attachment = derive2 { name="attachment"; version="0.2.3"; sha256="00asswxj37gj635ninkdqm70ks7ydkiqm7fffbk2hm2qjs0wsxb1"; depends=[desc glue knitr magrittr rmarkdown roxygen2 stringr]; }; + attachment = derive2 { name="attachment"; version="0.2.4"; sha256="1nvq94l544rgddx5jcvwhap7qz8h292pphvb97ip6jljgjc1dlqw"; depends=[desc glue knitr magrittr rmarkdown roxygen2 stringr]; }; attempt = derive2 { name="attempt"; version="0.3.1"; sha256="1ylgg7jcp8wqmxgf1mydnvh26k0mr8jyjla4hw06730r40yrs58m"; depends=[rlang]; }; attenuation = derive2 { name="attenuation"; version="1.0.0"; sha256="0ys4psvkvimmym4qj9cmhq8y7x10kv0x6bsvpjkrsc3l8p2g3474"; depends=[]; }; attrib = derive2 { name="attrib"; version="2021.1.2"; sha256="17s3hjp8zdl28y4h9iv854y1hli5yg1h0kqhj8v5hms1lhx7c1qq"; depends=[arm data_table dlnm ggplot2 glue lme4 lubridate magrittr mvmeta pbs progress stringr tibble tsModel]; }; @@ -6070,7 +6092,7 @@ in with self; { aucm = derive2 { name="aucm"; version="2019.12-1"; sha256="1vjb5jiq2iz6c8nhfcbqg21nms7nf485xlrgd7mdkbzvqxxl43h6"; depends=[kyotil]; }; auctestr = derive2 { name="auctestr"; version="1.0.0"; sha256="15b1x0c9yhl91gir7jmivp8vxzc8q7wvb0mgam9454avc6l29x4y"; depends=[dplyr tidyr]; }; auctionr = derive2 { name="auctionr"; version="0.1.0"; sha256="0kfx81irqr9mfp4n86z7q5nclcci8vlpvq9zid7miyw3rci7dfvi"; depends=[numDeriv]; }; - audio = derive2 { name="audio"; version="0.1-8"; sha256="1d2vkgbp64xlh9qccxvair00n8z1cwxmj37061ggpl9ylsy7h70s"; depends=[]; }; + audio = derive2 { name="audio"; version="0.1-10"; sha256="1pf4mwqar15v7y6sq8wkfqnr6rgpq9ywwsahzr76n6klijl33iw2"; depends=[]; }; audiolyzR = derive2 { name="audiolyzR"; version="0.4-9"; sha256="09jsrjy15vcn6da0kgk06ghayyrf3s853gqv8qdawg745ky2hbgi"; depends=[hexbin plotrix RJSONIO]; }; audiometry = derive2 { name="audiometry"; version="0.3.0"; sha256="0v6lhkm298xgdny0fhpldfwj8s4ljr21w6y6sv3vvyl87qjgwx8i"; depends=[ggplot2]; }; audit = derive2 { name="audit"; version="0.1-2"; sha256="0c8b94a5am196sbvmjxya7cg4aq6fcxr8c958fxx3jmy9r4hn6s2"; depends=[]; }; @@ -6080,6 +6102,7 @@ in with self; { augmentedRCBD = derive2 { name="augmentedRCBD"; version="0.1.5"; sha256="1bfb1jqakghf1nb3zwzf69cywwxwr1whzvyig8g3qa8ciq5f1h3i"; depends=[dplyr emmeans flextable ggplot2 mathjaxr moments multcomp multcompView officer Rdpack reshape2 stringi]; }; auk = derive2 { name="auk"; version="0.5.1"; sha256="0mf2rwf7sihmk6mla87gznh0s1rqxpijcjjv035iq3id6c81h03l"; depends=[assertthat countrycode dplyr httr magrittr readr rlang stringi stringr tidyr]; }; aurelius = derive2 { name="aurelius"; version="0.8.4"; sha256="00bpf9sggvnajpmg3zsdgfjinkb6wbrcf1ris7qfhh1rp5rz4m4m"; depends=[gbm glmnet jsonlite]; }; + ausplotsR = derive2 { name="ausplotsR"; version="1.2.7"; sha256="0vlldbdbgplk6a9n2xkac8i5nxf0y2p4zbrw5q9a3qc71zfl33yj"; depends=[betapart curl ggplot2 gtools httr jose jsonlite mapdata maps maptools plyr R_utils sp vegan]; }; auth0 = derive2 { name="auth0"; version="0.2.1"; sha256="077nqh28q3b9jb25fy0157l06zpx3x0rg4z5dz2dqsh88xy4nhqj"; depends=[htmltools httr shiny shinyjs yaml]; }; auto_pca = derive2 { name="auto.pca"; version="0.3"; sha256="01m2ldpcxzj7fhgmr9wp4ha3gqdyh7l5bkrnw83smcbq5229hsyy"; depends=[plyr psych]; }; autoBagging = derive2 { name="autoBagging"; version="0.1.0"; sha256="01k44rgkpbbr3m2x360aq0fz2qi7nz036g5dsh2y3jy94rmddbyy"; depends=[abind caret cluster CORElearn e1071 entropy infotheo lsr MASS minerva party rpart xgboost]; }; @@ -6099,12 +6122,11 @@ in with self; { automagic = derive2 { name="automagic"; version="0.5.1"; sha256="1mmm6kj6mxrn3s4v8ryszkxr9z7bh9cvhin7xjq111fkwly7wjkq"; depends=[dplyr formatR knitr magrittr purrr remotes yaml]; }; automap = derive2 { name="automap"; version="1.0-14"; sha256="1190kbmp0x80x0hyifdbblb4ijq79kvrfn9rkp5k6diig4v30n0w"; depends=[gstat lattice reshape sp]; }; automl = derive2 { name="automl"; version="1.3.2"; sha256="1nrg8q3y6rv69nmnsylg8rps4b4prx46j5a8ljlr24yc34504ck3"; depends=[]; }; - automultinomial = derive2 { name="automultinomial"; version="2.0.0"; sha256="04rjg3xjlhnkchzvdxqm762z5abm81s5b9czgzmli30zh07bf3fd"; depends=[igraph Matrix numDeriv]; }; autoplotly = derive2 { name="autoplotly"; version="0.1.4"; sha256="1z577jvadgiz028z7x0786d3qhlkrvv9i34xmllizvg94kxv3bl1"; depends=[ggfortify ggplot2 plotly]; }; autoshiny = derive2 { name="autoshiny"; version="0.0.2"; sha256="0s06ynnirgsh19x8qq4020piirkhvjqpvz372syygvlal062y6cn"; depends=[shiny]; }; autostats = derive2 { name="autostats"; version="0.1.0"; sha256="0yia8hli3d8pafr82a8syzq35jq2jdjsl4w7dahnfaq6bjzkdzx2"; depends=[BBmisc broom broom_mixed Ckmeans_1d_dp dials dplyr flextable framecleaner ggeasy ggplot2 ggstance ggthemes glmnet gtools janitor jtools lubridate magrittr Matrix nnet parsnip party patchwork presenter purrr readr recipes rlang rlist rsample stringr tibble tidyr tidyselect tune workflows xgboost yardstick]; }; autostsm = derive2 { name="autostsm"; version="2.0"; sha256="0xqvisad2rl4cjdijnjk3qvl52rrz7ddvykwpqxy185nl3iblpk7"; depends=[data_table doSNOW foreach forecast ggplot2 ggrepel gridExtra lmtest lubridate maxLik progress Rcpp RcppArmadillo sandwich strucchange]; }; - autothresholdr = derive2 { name="autothresholdr"; version="1.3.11"; sha256="1w0lxi9bbnffx0gjmll98ki4zh7i6v8wbjd0ziwzca1qwq3z4a9i"; depends=[checkmate ijtiff magrittr purrr Rcpp rlang strex stringr]; }; + autothresholdr = derive2 { name="autothresholdr"; version="1.3.12"; sha256="0gjv3yfslm5fvmr3h0df41pxb5j14pzsi31fi0hbjgv6lharh147"; depends=[checkmate ijtiff magrittr purrr Rcpp rlang strex stringr]; }; av = derive2 { name="av"; version="0.6.0"; sha256="0g6815y24h4la714a5bkj7nj4n39jycfynkli6y3jlijql96j2il"; depends=[]; }; available = derive2 { name="available"; version="1.0.4"; sha256="18dqm10dicbvjd5wli4nkv4fip0fgh2b9h9gm5511ayfsdg8lc8l"; depends=[cli clisymbols crayon desc glue jsonlite memoise SnowballC stringdist tibble tidytext udapi yesno]; }; avar = derive2 { name="avar"; version="0.1.1"; sha256="1i0bk3y0ca58ihwn4di8rpkp5vs2j5b80rcvaf72n9h2hp8i2ncz"; depends=[Rcpp RcppArmadillo simts]; }; @@ -6147,7 +6169,7 @@ in with self; { backShift = derive2 { name="backShift"; version="0.1.4.3"; sha256="1dhmq51w07vcqlngsb04ip0wqbgqq2xdfdm1w82r082f07ywqb16"; depends=[clue ggplot2 igraph MASS matrixcalc reshape2]; }; backbone = derive2 { name="backbone"; version="1.5.1"; sha256="06awrjcs78h7i632v5dyfqj0gldnww4xkn4j0rffimf3aiwxm7l9"; depends=[igraph Matrix network PoissonBinomial]; }; backpipe = derive2 { name="backpipe"; version="0.2.3"; sha256="12k2cv9x8h0b002m9c8g4vj5a7chp4b8jqz377ia0diqw89dydpm"; depends=[]; }; - backports = derive2 { name="backports"; version="1.3.0"; sha256="0bc14x4gyw4gnvm4hrvg5cmmrq449kfza3l14wdgp642ra8iw8sg"; depends=[]; }; + backports = derive2 { name="backports"; version="1.4.0"; sha256="1gxbimp6iv3viklsv2qlv8diq4nrgb3afyc5n3c2m1aas9jiaqg7"; depends=[]; }; backtest = derive2 { name="backtest"; version="0.3-4"; sha256="1s0mf247dz2vvyf4m3sp9xiqhv7xcs4rphyg9gdcy73060sah2ad"; depends=[lattice]; }; bacondecomp = derive2 { name="bacondecomp"; version="0.1.1"; sha256="1sd6pbhmx8vxz5c2cvvadbjy7p15y91gzs3n0ish7h5br1vq8fpm"; depends=[]; }; bacr = derive2 { name="bacr"; version="1.0.1"; sha256="14zr1v4rihx0ra3x0vsb81vsz0g8gzskkdxkg7nhiz835hp2fiy8"; depends=[MCMCpack]; }; @@ -6159,11 +6181,11 @@ in with self; { baggr = derive2 { name="baggr"; version="0.6.9"; sha256="19k47v5zqrfgj40msp5f06xh74bdplvw57capjc3xs9dbmvxb31i"; depends=[bayesplot BH crayon forestplot ggplot2 gridExtra quantreg Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders testthat]; }; baguette = derive2 { name="baguette"; version="0.1.1"; sha256="0srvvnyhi22r3l8j996zpq8mm140imdrijc0xhb8j9qgkqaia1b7"; depends=[butcher C50 dials dplyr earth furrr generics hardhat magrittr parsnip purrr rlang rpart rsample tibble tidyr withr]; }; bahc = derive2 { name="bahc"; version="0.3.0"; sha256="0yz0v33fhm38ivhr7bvajk9v7wdmhg9qg7ac8r2qr00rns82m6y3"; depends=[fastcluster matrixStats]; }; - bain = derive2 { name="bain"; version="0.2.6"; sha256="1zlza0qx8634z0nm2dcba3q7kw36ry2crxjy8snapybhafl6v7l4"; depends=[lavaan]; }; + bain = derive2 { name="bain"; version="0.2.7"; sha256="1k05npgiv11izm37fgbds8lc9yvfgklkdh099najxzbs4c13768z"; depends=[lavaan]; }; bama = derive2 { name="bama"; version="1.2"; sha256="1amxls4jl2ys5wkn600xmx0y3d9zhkz2s96vn7h8fnrrv35212yp"; depends=[BH Rcpp RcppArmadillo RcppDist]; }; bamboo = derive2 { name="bamboo"; version="0.9.25"; sha256="1il8sn8ck36b1m9hazhf6gmr58iqi2hjn0rrpcv1laij0lybrcws"; depends=[rscala]; }; bamdit = derive2 { name="bamdit"; version="3.3.2"; sha256="11v9hy8ijbcqhwim0s3y69dz11jvys4vjvfnshj4p5qdz38sji6l"; depends=[ggExtra ggplot2 gridExtra MASS R2jags rjags]; }; - bamlss = derive2 { name="bamlss"; version="1.1-5"; sha256="0g1cji85b5708n9zgwvl2d006zhax0039x8yzmzf9s0xdhvd4lk5"; depends=[coda colorspace Formula Matrix MBA mgcv mvtnorm sp survival]; }; + bamlss = derive2 { name="bamlss"; version="1.1-6"; sha256="0p3hx01209yjgw8cd8s1ns1n502f5dyvi650d58195w88xycvr7c"; depends=[coda colorspace Formula Matrix MBA mgcv mvtnorm sp survival]; }; bamp = derive2 { name="bamp"; version="2.1.0"; sha256="0d72s0vzy32zcd9sw1zlxc0whh5dpvlk7r9680b9smpzb58ijgfi"; depends=[abind coda]; }; bandit = derive2 { name="bandit"; version="0.5.0"; sha256="03mv4vbn9g4mqikd9map33gmw2fl9xvb62p7gpxs1240w5r4w3fp"; depends=[boot gam]; }; bang = derive2 { name="bang"; version="1.0.1"; sha256="0m7p9gzspkyp40ir842ff4b1827w9rh7x49kpp3y4dpi83krqy5a"; depends=[bayesplot rust]; }; @@ -6178,7 +6200,7 @@ in with self; { bartCause = derive2 { name="bartCause"; version="1.0-4"; sha256="1a1g4376l31pswxmmipm0xm3zazm1kfm3iwknjx6pchjavjhin9y"; depends=[dbarts]; }; bartMachine = derive2 { name="bartMachine"; version="1.2.6"; sha256="0zw42ffgyx08skl00a428f7gylby2rm8i0jpv6b1md557l1w06jy"; depends=[bartMachineJARs missForest randomForest rJava]; }; bartMachineJARs = derive2 { name="bartMachineJARs"; version="1.1"; sha256="1wpfzrb6mrx3xmxy4rgnwygmpqq2l4ki2xqr4m51g1bl9nwirhzj"; depends=[rJava]; }; - basad = derive2 { name="basad"; version="0.2.0"; sha256="1qc2amkrjrgdqys275p82lmbpjszm5rzjdpri7hqc9d8b8q1vc9q"; depends=[Rcpp RcppEigen rmutil]; }; + basad = derive2 { name="basad"; version="0.3.0"; sha256="0g8zfphwbvxq1ydvsaj0dvidsikrriyi80cam9i3syhx0v20vnir"; depends=[Rcpp RcppEigen rmutil]; }; base_rms = derive2 { name="base.rms"; version="1.0"; sha256="0lsbbcvmq5n3dpqic9qkyr8wdbmagaw32qfdnl0ck5b6ijh2wz0a"; depends=[do rms survival]; }; base64 = derive2 { name="base64"; version="2.0"; sha256="1labh0ycdm2xcjssj8bhnyjvbk44mcdsi0rb2p8rfqa428mrq9cf"; depends=[openssl]; }; base64enc = derive2 { name="base64enc"; version="0.1-3"; sha256="13b89fhg1nx7zds82a0biz847ixphg9byf5zl2cw9kab6s56v1bd"; depends=[]; }; @@ -6212,14 +6234,14 @@ in with self; { bayes4psy = derive2 { name="bayes4psy"; version="1.2.8"; sha256="0fmp88mrnmx4langd014l6jf06zmvwhclw4k0aw88v996hzv76bx"; depends=[BH circular cowplot dplyr emg ggplot2 mcmcse metRology Rcpp RcppEigen reshape rstan rstantools scales StanHeaders]; }; bayesAB = derive2 { name="bayesAB"; version="1.1.3"; sha256="1mwwbkd8mqm22mkbgrp5mq7i52qqjr9if09fnhb3ybdpqq3sdg73"; depends=[ggplot2 Rcpp rlang]; }; bayesCT = derive2 { name="bayesCT"; version="0.99.3"; sha256="0ragig1x34syhsnbnd58l2s7g23j7fb0cl9wkasvxq8cicw5hqgn"; depends=[bayesDP dplyr magrittr purrr survival]; }; - bayesDP = derive2 { name="bayesDP"; version="1.3.4"; sha256="1xhqkymgn2h3ar4iwbdzpcw154adszcgx81sdx0wq3s033sx0cpk"; depends=[ggplot2 MCMCpack Rcpp RcppArmadillo survival]; }; + bayesDP = derive2 { name="bayesDP"; version="1.3.5"; sha256="13wd83qwv7qi8v6nb7sn18hdcb11cpd2qr6js6kzsx65p08cmz2a"; depends=[ggplot2 MCMCpack Rcpp RcppArmadillo survival]; }; bayesDccGarch = derive2 { name="bayesDccGarch"; version="3.0.3"; sha256="0qgcy70sp3mlcpdkkg3nvxrvwgwy698r19yg31s3qjak17jnp8qn"; depends=[coda numDeriv]; }; bayesGAM = derive2 { name="bayesGAM"; version="0.0.1"; sha256="072q3kybnxjwc4s6qlww492cg43cr4zk6midyp5av7y3hnxbmqm8"; depends=[bayesplot BH boot cluster corrplot geometry ggplot2 gridExtra loo MASS mlbench Rcpp RcppEigen RcppParallel rstan rstantools SemiPar StanHeaders]; }; bayesGARCH = derive2 { name="bayesGARCH"; version="2.1.10"; sha256="1jb7jfyxp210pc8myv9lnwb55hy19d39m10kkhs5lyjwc2lv0401"; depends=[coda mvtnorm]; }; bayesImageS = derive2 { name="bayesImageS"; version="0.6-1"; sha256="0hz6ynvrhsxp097zswdlascza5n27cq4hfaqdc3r8b7crmh7lrim"; depends=[Rcpp RcppArmadillo]; }; bayesLife = derive2 { name="bayesLife"; version="5.0-3"; sha256="1dlaqp6qd6qi8p8ni3z7adjrsn44njzvngyga4a97crp3jfqpx7k"; depends=[bayesTFR car coda data_table hett wpp2019]; }; bayesPO = derive2 { name="bayesPO"; version="0.3.1"; sha256="1n9m89lhdj0ng3570x23kcjyjv85bky0hqrs1sl7qxjdzxacsisl"; depends=[coda Rcpp RcppEigen RcppProgress]; }; - bayesPop = derive2 { name="bayesPop"; version="8.1-3"; sha256="018nwm6nmg0cpgkmiiqijry59f1adx103wy5dgz8a64f9hj4nqdi"; depends=[abind bayesLife bayesTFR data_table fields googleVis MortCast plyr reshape2 rworldmap wpp2012 wpp2019]; }; + bayesPop = derive2 { name="bayesPop"; version="9.0-1"; sha256="15lisc0wvijmdjgw7n5fadbz4g702v9rp748h5xp5r6qk32g3njx"; depends=[abind bayesLife bayesTFR data_table fields googleVis MortCast plyr reshape2 rworldmap wpp2012 wpp2019]; }; bayesQR = derive2 { name="bayesQR"; version="2.3"; sha256="1c6y7r9h9626ghp68pl5k1g0l95fwd6dp0jfznmhy53qza0ny8z4"; depends=[]; }; bayesSurv = derive2 { name="bayesSurv"; version="3.3"; sha256="00brysldz0zbjbjs0qnd2mbpc3ipyz7224bnbwlf8d3b6ivw8iwv"; depends=[coda smoothSurv survival]; }; bayesTFR = derive2 { name="bayesTFR"; version="7.1-1"; sha256="0grkrcgn1x1qaajyamzlp7csmsmmslbjbmajk42m5g7cxxljvylr"; depends=[coda data_table lifecycle MASS mvtnorm wpp2019]; }; @@ -6262,7 +6284,7 @@ in with self; { bbdetection = derive2 { name="bbdetection"; version="1.0"; sha256="1j6xcbfsrg3wcr1rpddj7ia33szn5bs0wk4mzq42d761clsr5qq8"; depends=[ggplot2 Rcpp xtable zoo]; }; bbefkr = derive2 { name="bbefkr"; version="4.2"; sha256="1wjx652w3p41sq71a2zdzmb7frjxm6xvcgrc2ark2spwb0lbjjw6"; depends=[]; }; bbemkr = derive2 { name="bbemkr"; version="2.0"; sha256="015c57s8mpimm82nddnh382wlkisxgdmc2hvp7k38pcnqxc5gb5q"; depends=[MASS]; }; - bbl = derive2 { name="bbl"; version="0.4.0"; sha256="1xipzyz8gw0cnwwy0hspsbb6dby01rfyzafg5qvbg9a9f0j543f0"; depends=[pROC RColorBrewer Rcpp]; }; + bbl = derive2 { name="bbl"; version="0.4.1"; sha256="1iwljhs7mn6l6pvfrksdiq29f3d4cmhm079nbf4zpv5yq2rksdyq"; depends=[pROC RColorBrewer Rcpp]; }; bbmle = derive2 { name="bbmle"; version="1.0.24"; sha256="1bck8rmink4wsk8pcbnj4d60svxymp29pxbzwj8p9gzsg42c1v81"; depends=[bdsmatrix lattice MASS Matrix mvtnorm numDeriv]; }; bbo = derive2 { name="bbo"; version="0.2"; sha256="19xrbla3bb3csg3gjjrpkgyr379zfwyh293bcrcd6j8rnm6g4i01"; depends=[]; }; bbotk = derive2 { name="bbotk"; version="0.4.0"; sha256="09cw6z397laszsg5wsgpjh7jda74amqrcl2p25bgjg33ina2nvg7"; depends=[checkmate data_table lgr mlr3misc paradox R6]; }; @@ -6377,7 +6399,7 @@ in with self; { biClassify = derive2 { name="biClassify"; version="1.2"; sha256="05w22cv8w733xp79ciywih5cbv3fl6kzkbwwmrf44l1vdcnv3dsn"; depends=[DAAG expm fields MASS Matrix mvtnorm Rcpp RcppArmadillo]; }; biasbetareg = derive2 { name="biasbetareg"; version="1.0"; sha256="1562zdin0y5mrp36ih11ir3h9cv49cx1l98chxd89fkj8x3c1fbg"; depends=[betareg]; }; bib2df = derive2 { name="bib2df"; version="1.1.1"; sha256="0d57883df774qqwpssmly3f1gci32yc5sgwc3x8f2rjih23s1nf6"; depends=[dplyr httr humaniformat stringr]; }; - biblio = derive2 { name="biblio"; version="0.0.4"; sha256="03kwbv1pk29jhx27924fhlqa2dwl9w62x40pngs7ib86lr4bbwgy"; depends=[stringr yamlme]; }; + biblio = derive2 { name="biblio"; version="0.0.5"; sha256="13mbw95533iqi0mqa1frhljn0kzhzxrd70vhk0l0jfqdhms0sqw7"; depends=[stringr yamlme]; }; bibliometrix = derive2 { name="bibliometrix"; version="3.1.4"; sha256="14s1mn0j9120m1nh46380qbffy6d4zcx9ii3axbcwmhry0yr2ndw"; depends=[bibliometrixData dimensionsR dplyr DT factoextra FactoMineR forcats ggplot2 ggrepel igraph Matrix openxlsx plotly pubmedR RColorBrewer readr readxl rscopus shiny SnowballC stringdist stringr tidyr tidytext]; }; bibliometrixData = derive2 { name="bibliometrixData"; version="0.1.0"; sha256="0fdfgqsfiq3iacj4vb3bvx98waqzqxdsn2ds8wq86a30lm055d7n"; depends=[]; }; biblionetwork = derive2 { name="biblionetwork"; version="0.1.0"; sha256="0nhx9bk7r5l0bvj98clnmwf53ihghf48zai4nj6pcgr2rb69fvjj"; depends=[data_table Rdpack]; }; @@ -6390,7 +6412,7 @@ in with self; { bifurcatingr = derive2 { name="bifurcatingr"; version="1.0.0"; sha256="0msbdr2m4xmvnd00yklk2b8c8qwr11d5gc1x22sqd16fgj9y0qvf"; depends=[igraph MASS]; }; bigGP = derive2 { name="bigGP"; version="0.1-7"; sha256="0slg87g6lrdlzlcqxmcyxcwzrnmiz6ps0n14p27zcv0n687xifid"; depends=[Rmpi]; }; bigMap = derive2 { name="bigMap"; version="2.3.1"; sha256="08c9s5sk672j70d6pnva7z52i4s3knkby06lva9al9n8a3jiwsvz"; depends=[BH bigmemory colorspace RColorBrewer Rcpp RcppArmadillo]; }; - bigQF = derive2 { name="bigQF"; version="1.5"; sha256="118qijc2088lqmkz87f6p97a74in2132kmcfvrldwzh6kwf301dj"; depends=[CompQuadForm coxme Matrix svd]; }; + bigQF = derive2 { name="bigQF"; version="1.6"; sha256="01qr1cw5v330kkddmgwk4fdlm6msnqcbx1kfzw390yfwq5pr84sy"; depends=[CompQuadForm coxme Matrix svd]; }; bigQueryR = derive2 { name="bigQueryR"; version="0.5.0"; sha256="051c8rkj77dm78237dzhf3lcdawv0xv72pwfiim9bi89z9mp6f9m"; depends=[assertthat googleAuthR googleCloudStorageR httr jsonlite]; }; bigReg = derive2 { name="bigReg"; version="0.1.2"; sha256="1hmvh5j40zpzz6c88hmikphps8rb741yvkg60dxmkfl8gxqsrp3w"; depends=[MASS Rcpp RcppArmadillo uuid]; }; bigSurvSGD = derive2 { name="bigSurvSGD"; version="0.0.1"; sha256="08i6hwfr4rpvmxfa0vx8bi2dsa63iasj049ndwfn6zgvai6qaz0s"; depends=[bigmemory doParallel foreach Rcpp survival]; }; @@ -6433,10 +6455,11 @@ in with self; { binGroup = derive2 { name="binGroup"; version="2.2-1"; sha256="0cb7j6b0s3y56mv1967awwri0kv0rf3sr3vwf9gc2zbjggxi9ffp"; depends=[partitions Rdpack]; }; binGroup2 = derive2 { name="binGroup2"; version="1.1.0"; sha256="1hgz1w0bxbd82rx96s6b63wjczsb1x2l6j526wcnwix36kibv3p3"; depends=[ggplot2 partitions rBeta2009 Rcpp RcppArmadillo Rdpack scales]; }; binMto = derive2 { name="binMto"; version="0.0-7"; sha256="0rg9rsdy14jx7zjv60krcz1vh0sxqimsai0wynhx2sx0kydw4ngy"; depends=[mvtnorm]; }; + binancer = derive2 { name="binancer"; version="1.2.0"; sha256="1diy0g3mvzxs0jxybpk42m3ccs5qk1ynw116aaxsn5k9ch7crj3l"; depends=[data_table digest httr jsonlite logger snakecase]; }; binaryGP = derive2 { name="binaryGP"; version="0.2"; sha256="0i4xi0gxk0lamjdygyx0azdp3kfqmva1g20nl3p65w4yx77m88d6"; depends=[GPfit lhs logitnorm nloptr Rcpp RcppArmadillo]; }; binaryLogic = derive2 { name="binaryLogic"; version="0.3.9"; sha256="19ig9qgjjnivfihjy41pc13qlrb95679mmk4zks5lbbri8qi4qxj"; depends=[]; }; binb = derive2 { name="binb"; version="0.0.6"; sha256="0j9iyawkn1mqvf52q1abp0k00r5239rkvvmvl3cmp4jlffxd4xd7"; depends=[knitr rmarkdown]; }; - binda = derive2 { name="binda"; version="1.0.3"; sha256="15rhxnlif7agblzd09gyllkqkf5d8cc75b4vmp7grx8a6y7w47g0"; depends=[entropy]; }; + binda = derive2 { name="binda"; version="1.0.4"; sha256="0fgdpdjbw95rwv7l0acfb9cf7s57q5ld2vgdvrv1pxwkyi902nh4"; depends=[entropy]; }; bindata = derive2 { name="bindata"; version="0.9-20"; sha256="0smym431w755azsawwsdk6412dfj7bz3bdc3mqzam50xard4s94l"; depends=[e1071 mvtnorm]; }; bindr = derive2 { name="bindr"; version="0.1.1"; sha256="1l05fpk2yql3jka321c0bdgx6mqq9pvfrg2844lbjfpbgjkmqy3w"; depends=[]; }; bindrcpp = derive2 { name="bindrcpp"; version="0.2.2"; sha256="0rz4ibjdjsxl99ff3ha79z7cnjmilx4rx58fk9kk7ld9xc4hf4s8"; depends=[bindr plogr Rcpp]; }; @@ -6522,7 +6545,7 @@ in with self; { blaster = derive2 { name="blaster"; version="1.0.4"; sha256="0y2vdksmy1xngqvf7wxy5yf58830sm0bi82vn02yba1x6345ghjr"; depends=[Rcpp]; }; blastula = derive2 { name="blastula"; version="0.3.2"; sha256="084mk6xb8ivqrp8anvisfk8rvwi7qfrp5kmy66vpihmjmqh7dkyc"; depends=[base64enc commonmark curl digest dplyr fs getPass here htmltools httr jsonlite magrittr mime rlang rmarkdown stringr uuid]; }; blatent = derive2 { name="blatent"; version="0.1.1"; sha256="1jnf3i7s3mn99ff8yzygxys0w8qf6vrfk16iqgxh7jbivbrczysk"; depends=[coda Matrix mnormt R6 Rcpp RcppArmadillo truncnorm]; }; - blavaan = derive2 { name="blavaan"; version="0.3-17"; sha256="1rgi4wfwa6sh78vs7w1mpdfxi663840xg4kkqlgz28jscv64z8dd"; depends=[bayesplot BH coda future_apply lavaan loo Matrix MCMCpack mnormt nonnest2 Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; + blavaan = derive2 { name="blavaan"; version="0.3-18"; sha256="0rg86gsgi3kp2krhw8rabwpidcnlq6chsbmdw9jwfhf75yi60f9p"; depends=[bayesplot BH coda future_apply lavaan loo Matrix MCMCpack mnormt nonnest2 Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; blendedLink = derive2 { name="blendedLink"; version="1.0"; sha256="19d1pnjag89jjvkl5a6wx531qjqp4cv5jk95md6jby27yr52r8vp"; depends=[]; }; blender = derive2 { name="blender"; version="0.1.2"; sha256="1qqkfgf7fzwcz88a43cqr8bw86qda33f18dg3rv1k77gpjqr999c"; depends=[vegan]; }; blin = derive2 { name="blin"; version="0.0.1"; sha256="1h94azm7gli9i4v3li5c1p36p3rkcj2p5j6rqzlzf0pcqs0bsc09"; depends=[abind glmnet MASS Matrix mvtnorm]; }; @@ -6552,7 +6575,6 @@ in with self; { bmabasket = derive2 { name="bmabasket"; version="0.1.1"; sha256="1hgbl1x38snhzbh5j1qz81azkdwzmm4idacyyyrn895vl71ypfrn"; depends=[partitions Rcpp RcppArmadillo]; }; bmass = derive2 { name="bmass"; version="1.0.3"; sha256="0dafixd996lamn5kfbqpiawblalhyw1gi394j46n2sij2r209d76"; depends=[]; }; bmem = derive2 { name="bmem"; version="1.8"; sha256="1nhybz8aarzlqjx4443hsflflgy2jcprz5dv6mwxacnyspm93vlq"; depends=[Amelia lavaan MASS sem snowfall]; }; - bmeta = derive2 { name="bmeta"; version="0.1.2"; sha256="19pm60xpmlanngq4nbibp0n5m98xw24b2xghz92ly31i3mkg2n68"; depends=[forestplot R2jags]; }; bmgarch = derive2 { name="bmgarch"; version="1.0.1"; sha256="1jvfrzkjblzvm97wfwbwzz73sbhjkfkqg84rhgb2154vf2sdp139"; depends=[BH forecast ggplot2 loo MASS Rcpp RcppEigen Rdpack rstan rstantools StanHeaders]; }; bmggum = derive2 { name="bmggum"; version="0.1.0"; sha256="1r0j5gklmknyan68nc3vfn96ck414v75547486ic70v2pdr3xnpf"; depends=[BH edstan ggplot2 GGUM loo Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; bmixture = derive2 { name="bmixture"; version="1.7"; sha256="09ahs2dwrbqhk4aki9291v5lr5fa9mvi087zrqjmv2057ypyv2n5"; depends=[BDgraph]; }; @@ -6571,7 +6593,6 @@ in with self; { bnnSurvival = derive2 { name="bnnSurvival"; version="0.1.5"; sha256="1d9jmfx0id4lmw122zga7hb52vlfdfqn4amhzpsmhyck99rv92j4"; depends=[pec prodlim Rcpp]; }; bnormnlr = derive2 { name="bnormnlr"; version="1.0"; sha256="0l2r7vqikak47nr6spdzgjzhvmkr9dc61lfnxybmajvcyy6ymqs9"; depends=[mvtnorm numDeriv]; }; bnpa = derive2 { name="bnpa"; version="0.3.0"; sha256="0qsxk47i7q4d8hbs2xj5k5sf8bqyzhq7rbj4y7w8ljprznlydgl9"; depends=[bnlearn fastDummies lavaan Rgraphviz semPlot xlsx]; }; - bnpmr = derive2 { name="bnpmr"; version="1.2"; sha256="0vpqhs1h2mphn9w5yngb7lxvmzrhn7mkj7ca6hykhhg48s2ra98g"; depends=[]; }; bnpsd = derive2 { name="bnpsd"; version="1.3.13"; sha256="0wnbsz5c52pglycykzkd5lsnxfkjqva0xhwnb4kz7x1zd8vbd1sl"; depends=[ape nnls]; }; bnspatial = derive2 { name="bnspatial"; version="1.1.1"; sha256="1drm9ia4lr80wahbbn9xrw658ppmgxm4iadwv77jz1x786dda2n1"; depends=[doParallel foreach gRain gRbase raster rgdal sf]; }; bnstruct = derive2 { name="bnstruct"; version="1.0.11"; sha256="0vlmaz75mnbj4js3h5j11rs7q7yx5agwi1y7hq16nb8x81arhwai"; depends=[bitops igraph]; }; @@ -6586,7 +6607,7 @@ in with self; { boostmtree = derive2 { name="boostmtree"; version="1.5.0"; sha256="18w5h8m6g4aszffyn0ixhzn2bgbrwrrcq2k54b70vbw00xqxmg1q"; depends=[nlme randomForestSRC]; }; boot = derive2 { name="boot"; version="1.3-28"; sha256="0cjafhqv1c1mrjjcasqr767vs96wjcc6am9r1icryr8l4zymhwcz"; depends=[]; }; boot_heterogeneity = derive2 { name="boot.heterogeneity"; version="1.1.5"; sha256="0g4zkvx8krqh54xvjh1a0ybwl3v5bg3l670ycgnps8kkw32w5p1f"; depends=[HSAUR3 knitr metafor pbmcapply rmarkdown]; }; - boot_pval = derive2 { name="boot.pval"; version="0.3"; sha256="0pmp1wd12gzkpl2ank7yw7gd160aa5n07dxdy812vki6kjp3qd19"; depends=[boot car lme4 Rdpack survival]; }; + boot_pval = derive2 { name="boot.pval"; version="0.4"; sha256="05gxpky92f9jhvhv4faj49ql8a9mrfqdgk802i0hdw4lmnn90k7j"; depends=[boot car lme4 Rdpack survival]; }; bootComb = derive2 { name="bootComb"; version="1.0.2"; sha256="1vnkn1xa8qz58srgk1i5m3m3skghw5klvp0q53ab45a420j49spj"; depends=[]; }; bootES = derive2 { name="bootES"; version="1.2.1"; sha256="16b14bycy3ds09hsxnk738k2xq9qmwcy3kzdqd6rw9w4j7167kf0"; depends=[boot]; }; bootGOF = derive2 { name="bootGOF"; version="0.1.0"; sha256="11nn4lc9wdx1z35mfpc3zkk1xr0pvvjyvjzpjlq3z4gm0hmniifz"; depends=[checkmate R6]; }; @@ -6595,7 +6616,7 @@ in with self; { bootPLS = derive2 { name="bootPLS"; version="0.9.9"; sha256="1i0bzykwjimyswb0z23sqbhm98b9lxifnkby682khva7yfk7k8qr"; depends=[bipartite boot doParallel foreach mvtnorm pls plsRglm spls]; }; bootSVD = derive2 { name="bootSVD"; version="1.1"; sha256="16d3qv8vzhfvl9vbfglkb3csmc4npb29jcq9apv89hj7bkcapvi9"; depends=[ff]; }; bootStepAIC = derive2 { name="bootStepAIC"; version="1.2-0"; sha256="0p6v4zjsaj1p6c678010fazdh40lpv0rvhczd1halj8aic98avdx"; depends=[MASS]; }; - bootUR = derive2 { name="bootUR"; version="0.4.1"; sha256="0h5k73i5ps9sn81lm1kmyz3by6jjqm8zpbbli1h8vkkx49ybg4nq"; depends=[parallelly Rcpp RcppArmadillo RcppParallel RcppThread urca]; }; + bootUR = derive2 { name="bootUR"; version="0.4.2"; sha256="1vf6qynakcil8sz161c8jvkg7c5b5qmkzmsgd5vhp3yrjf1wbhf7"; depends=[parallelly Rcpp RcppArmadillo RcppParallel RcppThread urca]; }; bootcluster = derive2 { name="bootcluster"; version="0.2.5"; sha256="0jhq0f8a3lajhqksvxd3k703b50vzll43q9w4iaqv4ylsg9l6pyr"; depends=[cluster doParallel dplyr flexclust foreach fpc GGally ggplot2 gridExtra igraph intergraph mclust network plyr sna]; }; bootf2 = derive2 { name="bootf2"; version="0.4.1"; sha256="17wrl678x9mb5pny2vwrr6sdl2hsqr1nbjzsizp2q6l3w5m6s152"; depends=[ggplot2 MASS minpack_lm readxl]; }; bootnet = derive2 { name="bootnet"; version="1.5"; sha256="13pfmr259yikkb3y9438xz4bjn6kx5w5d2jhx441a00rvv1kb3hi"; depends=[abind corpcor dplyr ggplot2 gtools igraph IsingFit IsingSampler Matrix mgm mvtnorm NetworkToolbox networktools pbapply qgraph rlang snow tibble tidyr]; }; @@ -6627,7 +6648,7 @@ in with self; { bpnreg = derive2 { name="bpnreg"; version="2.0.2"; sha256="1acf7smlcg8b29ga47wpb23zpfb90iz19fjc5v0zppc8q20lgggl"; depends=[BH haven Rcpp RcppArmadillo]; }; bpp = derive2 { name="bpp"; version="1.0.2"; sha256="0an4lmml0jhx4lbbwiaa63jnqv8fx0nhb04vpsqgv8d0g9phqx3a"; depends=[mvtnorm]; }; bpr = derive2 { name="bpr"; version="1.0.4"; sha256="1pi5p0av40lhyc5vskrkkclx30amzry484g91s63cmffbfn08jsc"; depends=[BH coda MASS Rcpp RcppArmadillo]; }; - bqror = derive2 { name="bqror"; version="1.2.0"; sha256="0vyx3np42gm06rsqy4f7496hvp3ivx5f3axqlgb0pqvpqsi5m5a3"; depends=[GIGrvg invgamma MASS NPflow pracma truncnorm]; }; + bqror = derive2 { name="bqror"; version="1.3.0"; sha256="1qwng7hxbw7ilqjvw2nv38im1axq56sw04d75sygs9lg1jcgh4lv"; depends=[GIGrvg invgamma MASS NPflow pracma truncnorm]; }; bqtl = derive2 { name="bqtl"; version="1.0-33"; sha256="1sbzpi9z94f010lw2y1gmifjrvpmiqs4m26za7vr1xz72azrqvs9"; depends=[]; }; bracer = derive2 { name="bracer"; version="1.2.1"; sha256="0q47p43957nlaqsz0hhbica2hlar95c2i8avgq024yhccik5nx6f"; depends=[stringr]; }; braggR = derive2 { name="braggR"; version="0.1.1"; sha256="1sq7knrnz3nqprlvsj24f9gj1i0viawq3wcv2b97dmbwa7rd5qfz"; depends=[Rcpp]; }; @@ -6648,7 +6669,7 @@ in with self; { breathteststan = derive2 { name="breathteststan"; version="0.8.0"; sha256="1h05yqpsa1r6p0iybwh7rap0n10vr2wj2driq7qyq6wk6y14m8hc"; depends=[BH dplyr purrr Rcpp RcppEigen rstan rstantools StanHeaders stringr tibble tidyr]; }; brew = derive2 { name="brew"; version="1.0-6"; sha256="1vghazbcha8gvkwwcdagjvzx6yl8zm7kgr0i9wxr4jng06d1l3fp"; depends=[]; }; brglm = derive2 { name="brglm"; version="0.7.2"; sha256="08shcz0j1npdn7xkhsvlzs3z4rdwq3g4rk6a4xx8wirqw8n8s2an"; depends=[profileModel]; }; - brglm2 = derive2 { name="brglm2"; version="0.8.1"; sha256="1zqbvf79wf3l9lc7s2sf67bn3cbd5wv858f8gi4cf05z1cr34mgw"; depends=[enrichwith lpSolveAPI MASS Matrix nnet numDeriv]; }; + brglm2 = derive2 { name="brglm2"; version="0.8.2"; sha256="065ldmbagarhipl6hl25rlpcnp7c3h1adadyq2wgx0g09hq5ibjf"; depends=[enrichwith MASS Matrix nnet numDeriv]; }; briKmeans = derive2 { name="briKmeans"; version="0.1"; sha256="026wga5lqr8i6zxi8jnw466d40r9qf1blb7l331h9vaj2j169iax"; depends=[boot cluster depthTools]; }; brickr = derive2 { name="brickr"; version="0.3.5"; sha256="1a6yxhq2zly3i3gs4dd19xhyrin1qaxdr7x3a887j7zbcj0j4z9q"; depends=[colorspace dplyr farver ggplot2 magrittr purrr rgl scales tidyr]; }; bridgedist = derive2 { name="bridgedist"; version="0.1.0"; sha256="0hqkpwpi3nv6mfhljl65zcflf4wy72ag36hdam6s7kynfj41qz6w"; depends=[]; }; @@ -6658,10 +6679,10 @@ in with self; { brinton = derive2 { name="brinton"; version="0.2.5"; sha256="0jiw14glfhh13dkwn2x36q92gfhadna0fq4vs0f83nq8sqnx4s4m"; depends=[forcats GGally ggplot2 glue gridExtra lubridate pander RColorBrewer rmarkdown sm tibble]; }; brio = derive2 { name="brio"; version="1.1.2"; sha256="1vviykwx1z71yhk1xl87riaygj8sq0sj7ixyig1irqsi66aydpa2"; depends=[]; }; briqr = derive2 { name="briqr"; version="0.1.0"; sha256="073pdk1094ng4kggzdjvihl791r2qlja1j2w3pfmh2027kn520r8"; depends=[dplyr httr jsonlite magrittr tibble]; }; - briskaR = derive2 { name="briskaR"; version="1.0.2"; sha256="1m5ck90wc90wr5gbgzl3b9inxxng1sbaz5kdvy9s3jnyxspz97jn"; depends=[deldir deSolve fasterize fftwtools MASS mvtnorm raster Rcpp RcppArmadillo rgdal rgeos sf sp testthat]; }; + briskaR = derive2 { name="briskaR"; version="1.0.3"; sha256="1qnf7x7m5mm9pv8m47gj5jrbn4f7q24ks8zbn6vninj9r72smhs0"; depends=[deldir deSolve fasterize fftwtools MASS mvtnorm raster Rcpp RcppArmadillo rgdal rgeos sf sp testthat]; }; brlrmr = derive2 { name="brlrmr"; version="0.1.7"; sha256="0s47qz8y416x0gz91pzdpr97pmlvddwkvll454vnlafxxk9p5lds"; depends=[boot brglm MASS profileModel Rcpp]; }; brm = derive2 { name="brm"; version="1.1.1"; sha256="0kyr8mxz5g3w41kp08d47f29cff8fqrfbm1ri7hgfg2lgr1151xy"; depends=[]; }; - brms = derive2 { name="brms"; version="2.16.1"; sha256="1i0vkkfziac29vncw4igja5m7a6rhw9rqwifrw3y47q6zgczp7kl"; depends=[abind backports bayesplot bridgesampling coda future ggplot2 glue loo Matrix matrixStats mgcv nleqslv nlme posterior projpred Rcpp rstan rstantools shinystan]; }; + brms = derive2 { name="brms"; version="2.16.3"; sha256="1q93z4cf3iy4rs6pgvph6z7hc8q05iwif76hcg8p4kr6nl82nc38"; depends=[abind backports bayesplot bridgesampling coda future ggplot2 glue loo Matrix matrixStats mgcv nleqslv nlme posterior Rcpp rstan rstantools shinystan]; }; brnn = derive2 { name="brnn"; version="0.9"; sha256="0gyjvrakwd6nbgv94hbxvynsl52w0zswzp8fxl88rppycpgn81j6"; depends=[Formula truncnorm]; }; brokenstick = derive2 { name="brokenstick"; version="2.0.0"; sha256="0si4chi6fcp6n8wwvx6mrj9xlrldwhvcrx1kv7xbfd0p7kaz89qh"; depends=[coda dplyr lme4 matrixsampling rlang tidyr]; }; brolgar = derive2 { name="brolgar"; version="0.1.2"; sha256="0xhv76z75zsrvcy606cv8qvz14w5g02gcs2744kv1kflaaics7dx"; depends=[dplyr fabletools ggplot2 glue magrittr purrr rlang tibble tidyr tsibble vctrs]; }; @@ -6673,7 +6694,7 @@ in with self; { brotli = derive2 { name="brotli"; version="1.2"; sha256="07rgdgxh9bvn0qavpclxmkglwyl6ndqasxcs6j12if698dkn976b"; depends=[]; }; brr = derive2 { name="brr"; version="1.0.0"; sha256="050ivnqcaxiyypd1sxfpy6ianhzzmvs6c77ga40g3440cvfigkgw"; depends=[gsl hypergeo pander stringr SuppDists TeachingDemos]; }; brranching = derive2 { name="brranching"; version="0.7.0"; sha256="06jy3qhbr0v4m1j4j8a7fb7ic59sx4zhlsm1yb3g6rdwc00d67wj"; depends=[ape conditionz crul curl phylocomr phytools taxize]; }; - bruceR = derive2 { name="bruceR"; version="0.7.3"; sha256="1x3fm01vphcwqdwmav6nx7g94m9ll8xrxx9dmrg7awrjrc5zda0b"; depends=[cowplot crayon ggplot2 ggtext glue jmv pacman performance see]; }; + bruceR = derive2 { name="bruceR"; version="0.8.0"; sha256="0s9l4mdj77ys1cimrvc9hd5cvl02q8wsk46s4zfhk4p735slz1az"; depends=[cowplot data_table dplyr effectsize emmeans forcats ggplot2 ggtext performance psych see stringr tidyr]; }; brunnermunzel = derive2 { name="brunnermunzel"; version="1.4.1"; sha256="1lba5cpiray65zg1pv3xv6yl1xg78rqlwxkcmhgizlh1rhpd430p"; depends=[]; }; brxx = derive2 { name="brxx"; version="0.1.2"; sha256="08qlfnf84k3yjcvr1wm6gd96mk26xf2gz59ychb3m981228hbbs6"; depends=[blavaan blme GPArotation MASS MCMCpack rstan TeachingDemos]; }; bs4Dash = derive2 { name="bs4Dash"; version="2.0.3"; sha256="17vpng0s0sr3bnaqq3d545s72zd5a7isdbvzh01148lzq0va710g"; depends=[bslib fresh htmltools httpuv httr jsonlite lifecycle shiny waiter]; }; @@ -6690,7 +6711,8 @@ in with self; { bsplus = derive2 { name="bsplus"; version="0.1.3"; sha256="1grn2i2xxq5fhkqb7lqsfhbfckr6i3ddy7mikgxz6lifk4rc4mxx"; depends=[glue htmltools jsonlite lubridate magrittr purrr rmarkdown stringr]; }; bspm = derive2 { name="bspm"; version="0.3.8"; sha256="0ds841271jnslb5h1681kzp04h3jj6nya94xx1kr7abbc0sg23d4"; depends=[]; }; bspmma = derive2 { name="bspmma"; version="0.1-2"; sha256="1a3p1h7bks5yrxv791wfa680v4a6q10p59iz6wvfifhf3ndlaw49"; depends=[]; }; - bssm = derive2 { name="bssm"; version="1.1.7-1"; sha256="0vwhnpzvnx16a51sssnakydxv6jim3a16apfjd87ismwdycvkvlz"; depends=[checkmate coda diagis ramcmc Rcpp RcppArmadillo sitmo]; }; + bsreg = derive2 { name="bsreg"; version="0.0.1"; sha256="06kabvchg9jk9x6rgjlphnggpbfppzghqj7pw2nx1wizi2dw0sal"; depends=[Matrix R6]; }; + bssm = derive2 { name="bssm"; version="2.0.0"; sha256="10gk0b235c3szll3g48w9r2iryc0hfx6chh9bvxhm5r0qsfigmla"; depends=[checkmate coda diagis dplyr magrittr posterior ramcmc Rcpp RcppArmadillo rlang sitmo tidyr]; }; bssn = derive2 { name="bssn"; version="1.0"; sha256="1brxbvcvqy8n9xpvp5kz47x5ps8hdqgnh6s49051qaylp95qm432"; depends=[ClusterR mvtnorm sn ssmn]; }; bst = derive2 { name="bst"; version="0.3-23"; sha256="1wx039cl8s1j1dwjg50ivn39fckkf8mzgrm953bg02w0p0fpz5bh"; depends=[doParallel foreach gbm rpart]; }; bsts = derive2 { name="bsts"; version="0.9.7"; sha256="00iz1rwi7z02hipmmifzzgflf16b1va3pybxgi8xk3rdwxxvjpal"; depends=[Boom BoomSpikeSlab xts zoo]; }; @@ -6726,7 +6748,7 @@ in with self; { bwimage = derive2 { name="bwimage"; version="1.3"; sha256="1r5l7z90q2qs92dzp78jj4gf1kg1gc85g6y5rn2z8vxjbvbc5vma"; depends=[jpeg png]; }; bwsTools = derive2 { name="bwsTools"; version="1.2.0"; sha256="181pm9pr0ykyd3mikn6z4z5m7jkv72sisixmilijh6q3393g9pqw"; depends=[crossdes dplyr igraph magrittr rlang tidyr]; }; bysykkel = derive2 { name="bysykkel"; version="0.3.1"; sha256="1lvqbax7dvli4265856f9667ckp9g5l4radz2cp0yk0slsjgsdpg"; depends=[glue httr jsonlite lubridate tibble]; }; - bytescircle = derive2 { name="bytescircle"; version="1.1"; sha256="0c83d37kijcvr00pc4qqdci14cpbg6988izyjfjk1yliavyc6mwf"; depends=[]; }; + bytescircle = derive2 { name="bytescircle"; version="1.1.1"; sha256="0wlm41mhd3hbjc6lvdymng5fqfmlwfzj0pq7bgg47n5j5269qd06"; depends=[]; }; bzinb = derive2 { name="bzinb"; version="1.0.4"; sha256="1424lwsm2ra124h0ahbl42szbx500fqkf9ccw9k1688iwxnfg7f2"; depends=[BH Rcpp]; }; c060 = derive2 { name="c060"; version="0.2-8"; sha256="1lazxvlgj340bvnx9h1ihnnrjm9rrq8j9qv6glpyvaw1dzb1a60m"; depends=[glmnet lattice mlegp penalizedSVM peperr survival tgp]; }; c212 = derive2 { name="c212"; version="0.98"; sha256="0pzg239602iq56nhxfdvlk26z58lz6vvlbwsdpwhmich0by4gx4x"; depends=[coda]; }; @@ -6773,13 +6795,14 @@ in with self; { campfin = derive2 { name="campfin"; version="1.0.8"; sha256="06shr4p4g3cwxs1iszpvpk83k2mss6za68fqkv5pjiz44pc89v80"; depends=[dplyr fs ggplot2 glue httr lubridate magrittr purrr readr rlang scales stringdist stringr tibble]; }; camsRad = derive2 { name="camsRad"; version="0.3.0"; sha256="06gar6qan1ka01ngjvbpcv649yvfga697mplwn1x6qnfr4ngb7cs"; depends=[httr xml2]; }; camtrapR = derive2 { name="camtrapR"; version="2.0.3"; sha256="13zg8kx28il7rbyr2p3c1xdxx84b7shpcmgavzjqzh6wjm5bh5mh"; depends=[data_table overlap secr sp]; }; + canadamaps = derive2 { name="canadamaps"; version="0.1"; sha256="1i3yjhr5p06k6id3gws5dzdhf4jy143brbfhi2z4srq67xlz5agl"; depends=[dplyr magrittr rlang rmapshaper sf]; }; cancensus = derive2 { name="cancensus"; version="0.4.8"; sha256="0j4q00av0wssd0nwhgkdsyrcvicc4lial66ibfh5pyzih5i0dhpg"; depends=[digest dplyr httr jsonlite rlang]; }; cancerGI = derive2 { name="cancerGI"; version="1.0.0"; sha256="1chkcyf9m98gbn6b3vmb1baw7kii4g5vxvg2xfi7i6wwdn8sqr65"; depends=[igraph qvalue reshape2 survival systemfit]; }; cancerTiming = derive2 { name="cancerTiming"; version="3.1.8"; sha256="1sfi8q2f5ag7iak0sf9pmqncb89w3gnxdiwjwpivkwhr28ais4mq"; depends=[gplots LearnBayes]; }; candisc = derive2 { name="candisc"; version="0.8-6"; sha256="17bhh3jgaq5hrlwaapwpsgk7f8a3sg2cmrjd1hgfxxx0z30a6icn"; depends=[car heplots]; }; canprot = derive2 { name="canprot"; version="1.1.0"; sha256="0y6azzs603bf7rrz8hfql754xsdywl35846hj70f6sn1dj5wbzlk"; depends=[MASS rmarkdown xtable]; }; cansim = derive2 { name="cansim"; version="0.3.10"; sha256="0cg6fjw7mbzhlbc83s0wv313hhvm2jc9phs6m97nigi5yy05faa2"; depends=[DBI digest dplyr httr jsonlite purrr readr rlang RSQLite rvest stringr tibble xml2]; }; - canvasXpress = derive2 { name="canvasXpress"; version="1.35.0"; sha256="0ls5kqm233g0drlm5p0byk8k38s7h95wysg4rl9bj579cz67w4wq"; depends=[htmlwidgets httr]; }; + canvasXpress = derive2 { name="canvasXpress"; version="1.37.0"; sha256="0c87lansdyvvwrh4mqs0hmzk1j4j1p76hx0nnvvchcma59hc4bns"; depends=[htmltools htmlwidgets httr jsonlite]; }; canvasXpress_data = derive2 { name="canvasXpress.data"; version="1.34.2"; sha256="10fdlb1yp5x9533jdammncfrrlxzpcz9as8i0209pwzjywvxby3s"; depends=[]; }; cap = derive2 { name="cap"; version="1.0"; sha256="1pv8hskxjbp589dn7rx80yaa1ld76x1w37bss2fyrys1p3qr78aa"; depends=[MASS multigroup]; }; cape = derive2 { name="cape"; version="3.1.0"; sha256="0r20c5z28jyc5djymwkfzczyi3rlnj20p00jhc4dsywjcp68fx6n"; depends=[abind caTools corpcor doParallel evd foreach here igraph Matrix pheatmap propagate qtl qtl2 qtl2convert R6 RColorBrewer regress shape stringr yaml]; }; @@ -6801,7 +6824,7 @@ in with self; { carcass = derive2 { name="carcass"; version="1.6"; sha256="0nhp35nxjqqmy15rf9vc0qyymy7d0v8mc84570b9nc62g5xac8xy"; depends=[arm expm lme4 MASS survival]; }; card = derive2 { name="card"; version="0.1.0"; sha256="1api0j06fp5av5a48vnnm1wvwdcskynf0xsj9pb41njxdh9v8daf"; depends=[broom data_table dplyr generics ggplot2 ggrepel hardhat Hmisc lubridate lutz magrittr purrr readr recipes rlang sf stringr survival tibble tidyr]; }; cardidates = derive2 { name="cardidates"; version="0.4.8"; sha256="1mfd5sgzswhs9rln2bgxx8c54z69xp8l5dfmx7jfh8jl43qkzpjf"; depends=[boot lattice pastecs]; }; - care = derive2 { name="care"; version="1.1.10"; sha256="00h36by40v60mqzbf615a99sdfz0i42i57wybxrcm7y1y2la0da8"; depends=[corpcor]; }; + care = derive2 { name="care"; version="1.1.11"; sha256="0897v6acxf1myncd507by8zp7aga77pschyix1m4fzgpc6z35vlm"; depends=[corpcor]; }; careless = derive2 { name="careless"; version="1.2.1"; sha256="1zlkzrc9fw926knj6w7flv4q0w29k4aichawvprk94rk1bnrvdz5"; depends=[psych]; }; caret = derive2 { name="caret"; version="6.0-90"; sha256="1g36m06hp2fxxwv155bwbqlf97xhcia1lmg3axg6d74kgpns8lg8"; depends=[e1071 foreach ggplot2 lattice ModelMetrics nlme plyr pROC recipes reshape2 withr]; }; caretEnsemble = derive2 { name="caretEnsemble"; version="2.0.1"; sha256="127gqd23xjis62irqviihzk80zydrdplwh65zcmd7ng29ih5wnby"; depends=[caret data_table digest ggplot2 gridExtra lattice pbapply plyr]; }; @@ -6813,7 +6836,7 @@ in with self; { carrier = derive2 { name="carrier"; version="0.1.0"; sha256="0bqnwnnjqjk9q0lxq6kkz9s75ss10lfyyywyyi24m8wppxpw1vqc"; depends=[pryr rlang]; }; cartograflow = derive2 { name="cartograflow"; version="1.0.3"; sha256="09n3pgm70frrx9li1djrwkf4lzcq9c1xjs037vmsb1as0xvd19a1"; depends=[dplyr ggplot2 igraph maptools plotly reshape2 rgeos rlang sf sp]; }; cartogram = derive2 { name="cartogram"; version="0.2.2"; sha256="0kz8hwdr5n8llkylwaixnb66f4pzaxxniz57spxhqizmi6qay7yd"; depends=[packcircles sf]; }; - cartogramR = derive2 { name="cartogramR"; version="1.0-3"; sha256="1b3ig060jaaif882wm3qg70y8yl590aws5lcd90fzmryllc9xvgd"; depends=[data_table sf]; }; + cartogramR = derive2 { name="cartogramR"; version="1.0-5"; sha256="0rw7501p8hrgml3ih4vaqm5rcyzml2anxz0i4kjch20i2wcbl82c"; depends=[data_table sf]; }; cartography = derive2 { name="cartography"; version="3.0.1"; sha256="1ginq160ag0sv5xfiqc5a5vizsqvl3maw61yskwhfnjb2lcgk2yg"; depends=[classInt curl png raster Rcpp rgeos sf slippymath sp]; }; cartools = derive2 { name="cartools"; version="0.1.0"; sha256="0gc5502373f0c2m2rh6awvyfqrg1wx1f341dm2byk9znba887lgs"; depends=[animation devtools dplyr gapminder ggplot2 knitr rlist rmarkdown roxygen2 sde shiny tidyverse usethis]; }; carx = derive2 { name="carx"; version="0.7.1"; sha256="1qyqsj6pfzzqyaj6076zvgcimhl4cll6sxfb6aigm02rwfkq5gvh"; depends=[matrixStats mvtnorm nlme tmvtnorm xts zoo]; }; @@ -6885,7 +6908,7 @@ in with self; { cchs = derive2 { name="cchs"; version="0.4.2"; sha256="18zk50g7rw8cb09fczpcdgzjl1b06rgf6lwy99sg7nq4scnzgzm8"; depends=[survival]; }; cchsflow = derive2 { name="cchsflow"; version="2.0.0"; sha256="1r8m072f6idmmirwgr71llcka6f254jzhcs53yx6fxzncp5l2g6n"; depends=[dplyr haven magrittr sjlabelled stringr]; }; ccid = derive2 { name="ccid"; version="1.0.0"; sha256="1wzz8bydcy9x7rnrvvircd8lkrgx0p7x2q5hihxslz3siy1jjgaj"; depends=[gdata GeneNet hdbinseg IDetect]; }; - cclust = derive2 { name="cclust"; version="0.6-22"; sha256="1wyiwq16zyvc0vqbap1y4zfkvlgzwzjrx4vmrjhzlqxci8jryjbs"; depends=[]; }; + cclust = derive2 { name="cclust"; version="0.6-23"; sha256="00p4f558117p48jmkr2wh9smp58qkk4cx2gc19lm5krskm52nh71"; depends=[]; }; ccmEstimator = derive2 { name="ccmEstimator"; version="1.0.0"; sha256="1z53i7d2x1g93zskcyj93hxjyrvc9sjqmq887zaflwf22ikxvm6p"; depends=[]; }; ccmReportR = derive2 { name="ccmReportR"; version="0.1.0"; sha256="0jxxz26f0azp9xafqilvbbfhzn4ys8q4pf4c8bbnmwwbckmjajxm"; depends=[dplyr httr jsonlite keyring lubridate purrr rlang tibble]; }; ccmm = derive2 { name="ccmm"; version="1.0"; sha256="0855nr74xxpy7in2vrw15g8pv7nm1374irc1c5hikr5hadk5pf8v"; depends=[MASS]; }; @@ -6908,6 +6931,7 @@ in with self; { cdmTools = derive2 { name="cdmTools"; version="1.0.0"; sha256="1f131ix3b9np3g81yn172giglrahg9k67c3l7i5kpscfp4qp844z"; depends=[combinat GDINA ggplot2 GPArotation psych sirt]; }; cdom = derive2 { name="cdom"; version="0.1.0"; sha256="00xqqqhskjlkz8ii7kqyabxk8995w7g9jiz1isyqjpwg8nsa3x28"; depends=[broom ggplot2 minpack_lm tidyr]; }; cdparcoord = derive2 { name="cdparcoord"; version="1.0.1"; sha256="0ym2ypw4bsvmx9q4vskrq4pdd92y47vs8pay8san40rgzwqr2agb"; depends=[data_table freqparcoord partools plotly]; }; + cdrcR = derive2 { name="cdrcR"; version="0.0.1"; sha256="1z6z27rnqg07i5j09q0xwy9bvwci1vc2vijp6r733diivyhcraiv"; depends=[dplyr httr jsonlite magrittr purrr rjson rlang rlist sf tidyr tidyselect urltools]; }; cds = derive2 { name="cds"; version="1.0.3"; sha256="1h34k96h7ajkaqsw4dlqri63hrbnshaqwrdl74wlgycdlbvrqj05"; depends=[clue colorspace copula limSolve MASS]; }; ceRtainty = derive2 { name="ceRtainty"; version="1.0.0"; sha256="01wgvjpxqwhgh6vx9vbmiv4d88bps790l6ij3gw5w69hbrrd9ixi"; depends=[dplyr RColorBrewer tidyr]; }; cec2013 = derive2 { name="cec2013"; version="0.1-5"; sha256="07i2vp1x3qaw5di5vr5z70d47hh9174pjckjlhgv0f2w97slwc1i"; depends=[]; }; @@ -6942,6 +6966,7 @@ in with self; { cepreader = derive2 { name="cepreader"; version="1.2-0"; sha256="0ip1xxs0frcg08fnfxsxr39ldqgb2hmdrzh1lzdrbmr5ja4igf0x"; depends=[Matrix]; }; ceramic = derive2 { name="ceramic"; version="0.6.0"; sha256="0n0l1b7gb05kqjrh696faq868q3nbwlg34y6wgr0w205kdq6qs17"; depends=[curl dplyr fs glue jpeg magrittr png purrr rappdirs raster reproj rlang slippymath sp spex tibble]; }; cernn = derive2 { name="cernn"; version="0.1"; sha256="0gz2x20pgsiq85hwkkpg4s1cdlw9plygx0446djc7qsymp469p2w"; depends=[]; }; + cesR = derive2 { name="cesR"; version="0.1.0"; sha256="1sw5is461mrylmd8f9qzps368wilrgy41k6cmig445261zzqkikr"; depends=[dplyr haven labelled readr tidyr]; }; ceser = derive2 { name="ceser"; version="1.0.0"; sha256="1k2k2gykyajlahl7xvpxdla0ghapdxl24yi575pgq2421fpxq2i4"; depends=[dplyr lmtest magrittr purrr tibble]; }; cetcolor = derive2 { name="cetcolor"; version="0.2.0"; sha256="0kygdcr9ldanr0z4qpygwh0padki7s2ad0j6myky601g4228z79q"; depends=[]; }; ceterisParibus = derive2 { name="ceterisParibus"; version="0.4.2"; sha256="0hxklydsqb69y5sv2hanp5ja9k0063swf5si1j6gcj15lp7phpif"; depends=[DALEX ggplot2 gower knitr]; }; @@ -6966,6 +6991,7 @@ in with self; { cgmanalysis = derive2 { name="cgmanalysis"; version="2.7.2"; sha256="0rjs86qyqsz9x84h4lvv9kwam8aapcfhjkbsr8c3d5faddnh5vh6"; depends=[ggplot2 lubridate pastecs pracma readr readxl XML zoo]; }; cgmquantify = derive2 { name="cgmquantify"; version="0.1.0"; sha256="11pw1layzx9a8qy7n06nyc59mi5r07krhxw6hhybbqkdglzp511w"; depends=[dplyr ggplot2 hms magrittr tidyverse]; }; cgraph = derive2 { name="cgraph"; version="6.0.1"; sha256="0hmp07iz7ya3j8jaghm4pa0b84lsinc48rsibbh47sd3i6pkxfik"; depends=[]; }; + cgrcusum = derive2 { name="cgrcusum"; version="0.1.0"; sha256="1pmni0bw7yp8alqyd88ysl858jkp926my2c5g6z31izzyih29s0z"; depends=[ggplot2 survival]; }; cgwtools = derive2 { name="cgwtools"; version="3.3"; sha256="1dl9ghwfzjrl5pd6izy4c5qyfq2s8ywnqh97y1bhwmcw2qwb4ci6"; depends=[gmp]; }; ch = derive2 { name="ch"; version="0.1.0.2"; sha256="1ryh2xr1ix4qznq1svi4gdr4qy6v6rg597z2zl6zw32s2xq6ssx6"; depends=[clipr crayon ggplot2 magrittr MASS polynom pracma Ryacas]; }; chameleon = derive2 { name="chameleon"; version="0.2-0"; sha256="1q631l40gdknbv7dzvzgfdi0mx7rs4hlfkimhvf6li6ajmmh3sa5"; depends=[clue ggplot2 umap]; }; @@ -7045,7 +7071,7 @@ in with self; { cicerone = derive2 { name="cicerone"; version="1.0.4"; sha256="1z3i720970kmczg01wxwbyqwd9zby69lchw3pgqwpn2bjr66jimh"; depends=[assertthat R6 shiny]; }; cif = derive2 { name="cif"; version="0.0.9"; sha256="1rs44di1qjf6j89xg2x0a3s3lsnqxwnz0wcnys8xp68q198gipb6"; depends=[lubridate]; }; cifti = derive2 { name="cifti"; version="0.4.5"; sha256="092334lcpkzv52bg53hzx64dnrwq67f3p9fzwchmafx1l46xrqx9"; depends=[gifti oro_nifti R_utils xml2]; }; - ciftiTools = derive2 { name="ciftiTools"; version="0.6.1"; sha256="15r7h1z4ik0qp3rcssnpm66q5sgb35pjhimyq22447r6a51cz6c2"; depends=[fields gifti oro_nifti RColorBrewer rgl RNifti viridisLite xml2]; }; + ciftiTools = derive2 { name="ciftiTools"; version="0.7.0"; sha256="1i3wbbd20vaa4p0xqyxpz8ayacn88a9b7cfr4m6ckxmdbz2jwlsj"; depends=[fields gifti oro_nifti RColorBrewer rgl RNifti viridisLite xml2]; }; cimir = derive2 { name="cimir"; version="0.4-1"; sha256="0r8fmvqcihxsj0w1g2xm02wwqcgrwadbl5n1dzksw8zpcjfw7fkn"; depends=[curl dplyr glue jsonlite purrr rlang stringr tidyr]; }; cin = derive2 { name="cin"; version="0.1"; sha256="1pwvy5nh5nrnysfqrzllb9fcrpddqg02c7iw3w9fij2h8s2v6kq5"; depends=[]; }; cinaR = derive2 { name="cinaR"; version="0.2.1"; sha256="0i0fkh5j494fy9zy0p67ashqsa7vw3jhf092sw3nfyvmb7k4spnj"; depends=[ChIPseeker DESeq2 dplyr edgeR fgsea GenomicRanges ggplot2 ggrepel limma pheatmap preprocessCore RColorBrewer sva TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene writexl]; }; @@ -7053,7 +7079,6 @@ in with self; { cinterpolate = derive2 { name="cinterpolate"; version="1.0.0"; sha256="1aw6hs41xin2hhgmi4pr5510v4sn6x735lachpc5gpbxch5h3f82"; depends=[]; }; cir = derive2 { name="cir"; version="2.2.0"; sha256="0wfv7iv1z9xcp0icjr9agrl7j6z2z3d1wp85sd5dyzp9gbfjsinm"; depends=[]; }; circacompare = derive2 { name="circacompare"; version="0.1.1"; sha256="15vpnh20wni2wmp86xql9737kbxbi28s9a4pi3rihr1w5mcgqfaj"; depends=[ggplot2]; }; - circglmbayes = derive2 { name="circglmbayes"; version="1.3.0"; sha256="0i5aacr7vqznm3rhlznc02xjzjkjliadxhhvsmf8wb2cvivz0wir"; depends=[BH coda ggplot2 Rcpp RcppArmadillo reshape2 shiny]; }; circle = derive2 { name="circle"; version="0.7.1"; sha256="04gb3575sdlhh5z6bkam8sj2wg9npgq0b9572qm2dlrspmjqvcd4"; depends=[cli httr jsonlite]; }; circletyper = derive2 { name="circletyper"; version="1.0.1"; sha256="11jqcz0faxd7g50nmxa58c3gyaysvzcrgh6yalpxapz06md17wq5"; depends=[shiny]; }; circlize = derive2 { name="circlize"; version="0.4.13"; sha256="16rnqlkgzhnm69y70k9fiz8vvwlm5dyng04hlxqvvaxix3wdpfkc"; depends=[colorspace GlobalOptions shape]; }; @@ -7065,6 +7090,7 @@ in with self; { citbcmst = derive2 { name="citbcmst"; version="1.0.4"; sha256="1zkd117h9nahwbg5z6byw2grg5n3l0kyvv2ifrkww7ar30a2yikl"; depends=[]; }; citccmst = derive2 { name="citccmst"; version="1.0.2"; sha256="1b7awn1hjckxisfdi4ck697hwd4a5sqklwi7xzh6kgqhk9pv7vjn"; depends=[]; }; citecorp = derive2 { name="citecorp"; version="0.3.0"; sha256="0lqxa6qfysrk3rpg9fnsxhrfsd0qsbfxhc3b43090fhlxq9gk3wm"; depends=[crul data_table fauxpas jsonlite]; }; + citrus = derive2 { name="citrus"; version="1.0.1"; sha256="0ca91qff280k3vc837za3670plgrlfxqy6l7y8hhiknb68ja5yiy"; depends=[clustMixType dplyr GGally ggplot2 RColorBrewer rlang rpart rpart_plot rpart_utils stringr tibble treeClust]; }; ciu = derive2 { name="ciu"; version="0.5.0"; sha256="01fg5awbf35qparry0z3kl60kww8rbaqgi2b81vmbl77bls0my7l"; depends=[crayon ggplot2 Rcpp]; }; ciuupi = derive2 { name="ciuupi"; version="1.1.0"; sha256="0czfmmf62p1vml24s87pdwv52spqycchpkqzwk8vyd4n1z27r5s2"; depends=[functional nloptr pracma statmod]; }; ciuupi2 = derive2 { name="ciuupi2"; version="1.0.1"; sha256="04x02qmqqyrc4h4z4mpl4zn5vr9y28k6j6n30fbr9q238zd543db"; depends=[functional nloptr pracma PreciseSums statmod]; }; @@ -7095,7 +7121,7 @@ in with self; { cleaner = derive2 { name="cleaner"; version="1.5.3"; sha256="0glrymsfqh3lq9n0xr202i30jm6lqwgcj0r8czy0a3066qh7hjbm"; depends=[backports crayon knitr pillar rlang vctrs]; }; cleanerR = derive2 { name="cleanerR"; version="0.1.1"; sha256="0rghn8rx7dj5clmc1dqvqwfm9kiva04k9gxsjjga3109l4jcpg63"; depends=[data_table plyr]; }; cleangeo = derive2 { name="cleangeo"; version="0.2-4"; sha256="0yynf5d2lbz6329brzcnjm91rg6is60h2xlavz73lfxx3v549dy3"; depends=[maptools rgeos sp]; }; - cleanr = derive2 { name="cleanr"; version="1.3.3"; sha256="1vd50zb12s1379ln2zpg9acz50vw6xdhi11sy2zff3vpxdxly22f"; depends=[checkmate fritools pkgload rprojroot]; }; + cleanr = derive2 { name="cleanr"; version="1.3.4"; sha256="0fdf8rsr2krkshsnzwszsrxrqif7v1gpj1dpydynpyx1szdgz4li"; depends=[checkmate fritools pkgload rprojroot]; }; clere = derive2 { name="clere"; version="1.2.0"; sha256="0qc26ycycxphrbksk7jb1m6vh66a2zsnw8k4jnazs23sqdg24im9"; depends=[Rcpp RcppEigen]; }; clespr = derive2 { name="clespr"; version="1.1.2"; sha256="1993kd70w48a110im47vcpll0c6nfrm7m33r6l8rzgwnpsmcls8g"; depends=[AER clordr doParallel foreach magic MASS pbivnorm survival]; }; clevr = derive2 { name="clevr"; version="0.1.1"; sha256="077qhqfzcy1ciar70df7q98ms003b9mnqgji1nxkx5ncw9hdkzd4"; depends=[BH Matrix Rcpp]; }; @@ -7105,7 +7131,7 @@ in with self; { clickR = derive2 { name="clickR"; version="0.8.0"; sha256="0j8hl5cgdm4j4h3x3h7fp6w3xr8p350icvmf123z56f6fkj6c22z"; depends=[beeswarm stringdist]; }; clickstream = derive2 { name="clickstream"; version="1.3.1"; sha256="0z1yy5lr9m5x9ybimjy3f6kn490abdi038xi0qw7ny80f1ca6ry7"; depends=[arules ClickClust data_table ggplot2 igraph linprog MASS plyr reshape2 Rsolnp]; }; cliff = derive2 { name="cliff"; version="0.1.2"; sha256="0d7aswvsqlyai3rxxbfy08cs4qbi9fjjls62y1p95bmnhq1b3bwf"; depends=[ellipsis processx rlang]; }; - clifford = derive2 { name="clifford"; version="1.0-2"; sha256="17br7p4zj1cjf1nbwbk0a2jjxj589qgvlnzi6yp4dqlf2g0w01z6"; depends=[BH Rcpp]; }; + clifford = derive2 { name="clifford"; version="1.0-5"; sha256="1n7wra4z73nxv2hkdl65iwfl9cr3wn7sa6wpvfg1c7yp72kskbp0"; depends=[BH disordR magrittr mathjaxr partitions Rcpp]; }; clifro = derive2 { name="clifro"; version="3.2-5"; sha256="1p2xy5r9axkj8yk6ywaq0w5i00bdfm15drjz227nx8p4vd3q6si8"; depends=[ggplot2 httr lubridate magrittr RColorBrewer reshape2 rvest scales stringr xml2]; }; clikcorr = derive2 { name="clikcorr"; version="1.0"; sha256="0zdnbcl5q293mmm6pbn4ri7p1q6z6sff74axsb3nyd153v2xamr5"; depends=[mvtnorm]; }; climaemet = derive2 { name="climaemet"; version="1.0.0"; sha256="19i89274m7ybnlzgm5bgw6nwiwicc3fd2clmgiqklr23sq8zvn6w"; depends=[dplyr ggplot2 httr jsonlite lubridate rappdirs readr rlang tibble tidyr]; }; @@ -7171,7 +7197,8 @@ in with self; { clustermq = derive2 { name="clustermq"; version="0.8.95.2"; sha256="1p5jy4mq70wh8rrkppshjy9pksw06k9l2d65c6sj1ykhvqiwcpcc"; depends=[narray progress purrr R6 Rcpp]; }; clusternomics = derive2 { name="clusternomics"; version="0.1.1"; sha256="05nkw6h2dvky07fj50myzw5xlkqyiflbn4vwqw8a1q2idv4awi7b"; depends=[magrittr MASS plyr]; }; clustertend = derive2 { name="clustertend"; version="1.5"; sha256="194acf2pd71jxyyjj7ri9mpnx094zziwmq6w9lfclifrnkqv6ra9"; depends=[]; }; - clustrd = derive2 { name="clustrd"; version="1.3.7-2"; sha256="0j0nmqc9q9djg824g89z27xizdy1jdsygz1gc0r0mrzdd3dyk2ya"; depends=[ca cluster corpcor dplyr fpc GGally ggplot2 ggrepel plyr rARPACK tibble]; }; + clustra = derive2 { name="clustra"; version="0.1.5"; sha256="1aw1jw8lq8qpsfgzkpjp00xhmk7rl99yc43jvjc8c5sp5bibcll0"; depends=[data_table mgcv MixSim]; }; + clustrd = derive2 { name="clustrd"; version="1.3.9"; sha256="0w644h2sr0nwx3qh15qbmbrnfzmf3rzv9ka7nfskq2si4yrj25z4"; depends=[ca cluster corpcor dplyr fpc GGally ggplot2 ggrepel plyr rARPACK tibble]; }; clustree = derive2 { name="clustree"; version="0.4.4"; sha256="0vwmicajl7c0rmjdmf4f857fii0xrxz25vjkn888svlsikw00qbs"; depends=[checkmate dplyr ggplot2 ggraph ggrepel igraph rlang tidygraph viridis]; }; clustringr = derive2 { name="clustringr"; version="1.0"; sha256="07f0ywpkf8igic7ijvvrjlngq3smjcv9nqnah41fp6wfgvh49ifq"; depends=[assertthat dplyr forcats ggplot2 ggraph igraph magrittr rlang stringdist stringi stringr tidygraph]; }; clustsig = derive2 { name="clustsig"; version="1.1"; sha256="0n5nf712vsa8zb0c2lv4gjqsgva62678vjngr9idgswb73shxm8v"; depends=[]; }; @@ -7185,6 +7212,7 @@ in with self; { cmdfun = derive2 { name="cmdfun"; version="1.0.2"; sha256="1pbcq7hi2lcmqnghmy3q2fsk0c9fy5m0637acyzmc096fxbx723j"; depends=[magrittr purrr R_utils rlang testthat usethis]; }; cmenet = derive2 { name="cmenet"; version="0.1.1"; sha256="0f7bci6nn63q243i7wvhr9mqlf64gw8w042nc1lqb986p7zfxihk"; depends=[glmnet hierNet MASS Rcpp RcppArmadillo sparsenet]; }; cmfrec = derive2 { name="cmfrec"; version="3.2.2-2"; sha256="0s75scl7jr7ginsi3fpvip919kd1zwchp5gj9x87qgw5zimqyjkp"; depends=[]; }; + cml = derive2 { name="cml"; version="0.0.1"; sha256="18zzb1vldgn61jlds7p79wr13jl13q9icfiraj33kwdmx3q6yh2c"; depends=[MASS vegan]; }; cmm = derive2 { name="cmm"; version="0.12"; sha256="0q6hs56hhi9vaanx7i7gg7ncv0h29lndla66g9chzmh3lchq3r20"; depends=[]; }; cmmr = derive2 { name="cmmr"; version="0.1.2"; sha256="0nik1pzd1rckalvn7xh6s699kkdjnra3q3bn5x16c1lmpz5bp2s4"; depends=[httr progress RJSONIO]; }; cmna = derive2 { name="cmna"; version="1.0.5"; sha256="161qc7q88ajm3l62bq03lpf35bdii1w1d111085zvs3hrf09iybw"; depends=[]; }; @@ -7243,7 +7271,7 @@ in with self; { cofeatureR = derive2 { name="cofeatureR"; version="1.1.1"; sha256="1awfrlnbpw9ivfvaahznx6dx5jp8ln0154vh2pznp520q59h1mbs"; depends=[dplyr ggplot2 lazyeval tibble]; }; coffee = derive2 { name="coffee"; version="0.1.1"; sha256="06v19i6karcn9a1sminfi2k0c1zzv9m5dm8qfyqjqcbc78yvwif0"; depends=[IntCal]; }; coga = derive2 { name="coga"; version="1.1.1"; sha256="0128x4qmln1ks7cqd5n22aw41f097lw785lw4ca80nyn2bz5jmqk"; depends=[cubature Rcpp RcppGSL]; }; - cogmapr = derive2 { name="cogmapr"; version="0.9.1"; sha256="1iz776avw05a0lcna78fycixacby4bjf8ar1jazsf34yss6zka23"; depends=[car dplyr ggplot2 graph magrittr Rgraphviz tidyr]; }; + cogmapr = derive2 { name="cogmapr"; version="0.9.2"; sha256="1s0f72id590880rhgwspyav11sghxn6havygwi12swylb3q3r73m"; depends=[dplyr ggplot2 graph magrittr Rgraphviz tidyr]; }; cognitoR = derive2 { name="cognitoR"; version="1.0.2"; sha256="1pz4wk7vdc1nhm76kz912hyyc9c408qsldfr9dygqvran4xvqm9g"; depends=[base64enc config dplyr httr jsonlite paws shiny shinyjs yaml]; }; cohorts = derive2 { name="cohorts"; version="1.0.0"; sha256="1v3knxnsacyf04v2dgd0g57z709279x1s8dqsja948y381p1dar9"; depends=[data_table dplyr dtplyr magrittr tibble tidyr zoo]; }; cohorttools = derive2 { name="cohorttools"; version="0.1.4"; sha256="1zpf3qgzkn34wc36r89ymzfx4fvlgl7x1yiwdwzzd20xv3nx2b5h"; depends=[cmprsk DiagrammeR DiagrammeRsvg Epi ggplot2 rsvg survival]; }; @@ -7371,7 +7399,7 @@ in with self; { configural = derive2 { name="configural"; version="0.1.4"; sha256="1vi6xczqlrzhrfv418wlvqiv69kap4awlxkjpgi7b1ix5ayc8mq8"; depends=[]; }; confinterpret = derive2 { name="confinterpret"; version="1.0.0"; sha256="0qldaqpx7kpk71zfwv465jrscwzc9w3xfv52i4h01k9aw3q6m8ja"; depends=[]; }; confintr = derive2 { name="confintr"; version="0.1.1"; sha256="18nkgcpl43hih7l04rxv21pil48h780wjna3vm2763ffkilkk5cl"; depends=[boot]; }; - conflicted = derive2 { name="conflicted"; version="1.0.4"; sha256="0xp04cdvmp3b1phazhmjqn0vmax1b2218xsb5854ffv43m7qvrra"; depends=[memoise rlang]; }; + conflicted = derive2 { name="conflicted"; version="1.1.0"; sha256="1qg9ar114r98wm0pnf65mss4v2ksq3924rlpm13mqp4s3p6j9yi4"; depends=[memoise rlang]; }; conflr = derive2 { name="conflr"; version="0.1.1"; sha256="1bjdmvi0n8746g7dxwgzh3fi33sq4bgfr0nd3nqd2caj8ryi2gv9"; depends=[askpass commonmark curl glue httr knitr miniUI purrr R6 rlang rmarkdown rstudioapi shiny stringi xml2]; }; conformalClassification = derive2 { name="conformalClassification"; version="1.0.0"; sha256="03v6xbgipb97byarqj0d38z9yb2g54mkkw343jxmi2j058z26yw7"; depends=[doParallel foreach mlbench randomForest]; }; confoundr = derive2 { name="confoundr"; version="1.2"; sha256="000vf828qv04pplx8yc8q3mafxf4g0axip6z5zbsj2581yxv9jjh"; depends=[dplyr ggplot2 gridExtra magrittr purrr rlang Rmpfr scales stringr tidyr]; }; @@ -7398,7 +7426,7 @@ in with self; { contact = derive2 { name="contact"; version="1.2.8"; sha256="1db3vgjlz0ivw3sx37mwy7ngjx0in3rxlm3i3akh4xzbfp9gjj87"; depends=[ape data_table doParallel foreach igraph lubridate raster rgdal rgeos sp]; }; contactdata = derive2 { name="contactdata"; version="0.2.0"; sha256="1hcibqkfisv28d38ymgvmkkbs4jl3lbp2safyd5abf185043263d"; depends=[]; }; container = derive2 { name="container"; version="1.0.0"; sha256="0yr06z6vdz1qz7vp3hf1zqnk0n2g77iaq9nfx6r9275m5v2hl6iw"; depends=[data_table R6]; }; - contentid = derive2 { name="contentid"; version="0.0.14"; sha256="1h31wnwmpira809dvbcsgnm3mgn2l3j58hr623ksv5wnxi256nv3"; depends=[curl fs httr openssl]; }; + contentid = derive2 { name="contentid"; version="0.0.15"; sha256="0r5lrq82vfv698g8md8kdhl83gi8rx5hrhk2qddykxlxk4krzagi"; depends=[curl fs httr openssl]; }; contfrac = derive2 { name="contfrac"; version="1.1-12"; sha256="0sq5c7ny235yrkv2xc4insgxby6rvzc1qsj8h301cd2if3lwbgwm"; depends=[]; }; conting = derive2 { name="conting"; version="1.7"; sha256="08f271j3gxcp4shda08kkv0v9ayaadvxgcglfsn6hjmw4hn298zg"; depends=[BMS coda gtools mvtnorm tseries]; }; contingency = derive2 { name="contingency"; version="0.0.6"; sha256="0bwvrwsa41s24j612w4jyhlfp2r6qa37ljsb3lxx27mkd9r0286d"; depends=[rje]; }; @@ -7421,7 +7449,7 @@ in with self; { coop = derive2 { name="coop"; version="0.6-3"; sha256="0ww99ssgawsgn6rqy838wbx6iirzdrzyxirvz084ih8j50blx420"; depends=[]; }; coopProductGame = derive2 { name="coopProductGame"; version="2.0"; sha256="1348pgqfvvysdixsjibgkvwjsmqasnlmwf9kyr39lw8jb81z25h0"; depends=[dplyr GameTheory ggplot2 gtools kappalab lpSolveAPI]; }; cooptrees = derive2 { name="cooptrees"; version="1.0"; sha256="0izvwna1jsqik3v5fz1r4c86irvma42clw0p4rdvwswv5pk698i1"; depends=[gtools igraph optrees]; }; - copBasic = derive2 { name="copBasic"; version="2.1.6"; sha256="0k63cgwqpr2gj7632agwfy5x571hgl2bnrrazdkqg2q75nivh57k"; depends=[lmomco randtoolbox]; }; + copBasic = derive2 { name="copBasic"; version="2.1.7"; sha256="1vn3v0shk9hjsnjm2cs8d6gfhwfjd5gp98cq9z6cc6z0cw62164h"; depends=[lmomco randtoolbox]; }; copCAR = derive2 { name="copCAR"; version="2.0-4"; sha256="1wvp7khp0f0x6skiq1d6npndb09ak6d6ijmx907gfrd6b0ydaklb"; depends=[mcmcse numDeriv Rcpp RcppArmadillo spam]; }; cope = derive2 { name="cope"; version="0.2.3"; sha256="1r02nb6wy25ixhdcbqqz167s7ny3hydpxfxry5ar4136qvcamgyy"; depends=[abind fields maps MASS Matrix mvtnorm nlme]; }; copent = derive2 { name="copent"; version="0.2"; sha256="0cqq18swjawmn3avbi5v6ihqg3xx9i7qhmxdrm4wk4w6cispc0zb"; depends=[]; }; @@ -7470,14 +7498,14 @@ in with self; { correlbinom = derive2 { name="correlbinom"; version="0.0.1"; sha256="1ix3ccxzr7vqblbda5awsva3h95b69v7kc6adz622bbi8r36xxcq"; depends=[Rmpfr]; }; corrgram = derive2 { name="corrgram"; version="1.14"; sha256="12dhvwaprdmzxxk52w8sb3cx99dmzb9yhcm01pri0vcz671p57v1"; depends=[]; }; corrgrapher = derive2 { name="corrgrapher"; version="1.0.4"; sha256="0s10n2av6dyjz6x4wvznpcbvpp63v6k3r9whkqsg7fiy9m3d4dr9"; depends=[ggplot2 htmltools ingredients knitr visNetwork]; }; - corrplot = derive2 { name="corrplot"; version="0.91"; sha256="0j18gs633s1yh6y96bbc851lmmyx4r96cbf5f4f21i9n5vq627z0"; depends=[]; }; + corrplot = derive2 { name="corrplot"; version="0.92"; sha256="1g98jk6xsl08z4n6sy5vriif99m31zhbz7j3dh1kfj4w7yb9zh78"; depends=[]; }; corrr = derive2 { name="corrr"; version="0.4.3"; sha256="096j9y1i1g7wgvn15vpil63cnb24mm0fgklbsgygwwgnlx2j0rgg"; depends=[dplyr ggplot2 ggrepel purrr rlang seriation tibble]; }; corrsieve = derive2 { name="corrsieve"; version="1.6-8"; sha256="0ak3j9khcwv5rxbicck2sr260wpmd3xj254y7pdavx2fk0b72yxs"; depends=[]; }; corset = derive2 { name="corset"; version="0.1-4"; sha256="0ladyqvkys4cldvbhkii9jwn1k5p1ym2g5bgdlz1hq1sv30ixn2f"; depends=[]; }; cort = derive2 { name="cort"; version="0.3.2"; sha256="1iayvgwjmpmb96w5841jxhwivca7s4v5bpsdy0lrbk121saqq5z1"; depends=[furrr nloptr osqp purrr Rcpp Rdpack]; }; corto = derive2 { name="corto"; version="1.1.10"; sha256="1vddp42klrji8qfccdrfwppk657aa46crs65mvbpcj9wss7zj2ng"; depends=[dplyr gplots knitr pbapply plotrix rmarkdown]; }; corx = derive2 { name="corx"; version="1.0.6.1"; sha256="179fxjagbq33549zyk234kz9ajbifl7qpmdy0lrw9vzjc8aqbycf"; depends=[clipr crayon ggcorrplot ggplot2 ggpubr glue magrittr moments ppcor psych tidyselect]; }; - cosa = derive2 { name="cosa"; version="2.0.0"; sha256="1ra1m75ay829xlhjax82px4ffflnfgh2mrmzzj4i8ml545d9hmgr"; depends=[msm nloptr]; }; + cosa = derive2 { name="cosa"; version="2.1.0"; sha256="15ygpaqd48xqx0h08v0nf73yzif63r2nzcznlmk0ck2ydx4n85fp"; depends=[msm nloptr]; }; cosinor = derive2 { name="cosinor"; version="1.1"; sha256="02nnqg51vq48lzk667cyarnmhcf5mifnsdij7dlgqvz2k4fdq4pl"; depends=[ggplot2 shiny]; }; cosinor2 = derive2 { name="cosinor2"; version="0.2.1"; sha256="1pp0z86fflqkkllfrzx3vj98kzxjwnawr4a2d8z5q6zhq6v5qrvf"; depends=[cosinor cowplot ggplot2 Hmisc magrittr matrixStats purrr scales stringr]; }; cosmoFns = derive2 { name="cosmoFns"; version="1.0-1"; sha256="0a6xhbgxxnymlvicg99yhgny2lscxcbmvqmy17kxmahdi797dsg6"; depends=[]; }; @@ -7549,7 +7577,7 @@ in with self; { cpr = derive2 { name="cpr"; version="0.2.3"; sha256="1a2lza1bw74xzrs17a9gr9mnpvnnrykhwd73yqi63wp3k4sm42rb"; depends=[dplyr ggplot2 lazyeval lme4 magrittr plot3D Rcpp RcppArmadillo rgl tibble tidyr]; }; cprobit = derive2 { name="cprobit"; version="1.0.2"; sha256="16fnndpkd226paahmadsddakj4yhybw7lp3csr73fwv78zfl2fj9"; depends=[car ggplot2 gridExtra nortest]; }; cprr = derive2 { name="cprr"; version="0.2.0"; sha256="049xnma0rdnya7zp05iraq15nwjgmdmli9g7xxprab822047vld7"; depends=[]; }; - cpsR = derive2 { name="cpsR"; version="0.4.4"; sha256="1krwmqlqqyn1a2dzy7lam1w4vzhqka3jjibysymy829clbj0vznn"; depends=[httr jsonlite tibble]; }; + cpsR = derive2 { name="cpsR"; version="0.4.5"; sha256="1maqc5lr21h59wk4449zl8b8p9fzp9z6va52mc3k6z4sq4f784na"; depends=[httr jsonlite tibble]; }; cpss = derive2 { name="cpss"; version="0.0.2"; sha256="1a6nphzf9y1p1ic51f0zll6g3j3flr7szrvzac1w4a023fj7301r"; depends=[dplyr ggplot2 gridExtra magrittr mvtnorm Rcpp RcppArmadillo Rfast rlang tibble tidyr]; }; cpsurvsim = derive2 { name="cpsurvsim"; version="1.2.0"; sha256="1fn88cqryji1syzhnx726m5svxnrlyynxk4jhp5ny8g3knai6nnk"; depends=[Hmisc knitr plyr]; }; cpsvote = derive2 { name="cpsvote"; version="0.1.0"; sha256="0nmg79isqwvxyg7zkfbshndfjb2fnc2ffg32hxvjvsy714lpljf6"; depends=[dplyr forcats magrittr readr rlang stringr]; }; @@ -7572,7 +7600,7 @@ in with self; { crayon = derive2 { name="crayon"; version="1.4.2"; sha256="0mxq87qsvz5znfncrb6yjchzv6iwpn9lr386i02y6xiycizkjd7f"; depends=[]; }; crch = derive2 { name="crch"; version="1.0-4"; sha256="18qjvh1lkw1f6rrhnb21f30xxrcq8whbs3x1jgkw6q14rf1483ri"; depends=[Formula ordinal sandwich scoringRules]; }; crctStepdown = derive2 { name="crctStepdown"; version="0.1"; sha256="07y4drz76nqk2lvk2600w3s20qx71xddlxqc8zrw3bh02pgdnpy7"; depends=[fastglm ggplot2 ggpubr lme4 Rcpp RcppArmadillo rlang stringr]; }; - credentials = derive2 { name="credentials"; version="1.3.1"; sha256="0q3s1bibwvw1p541k8a5cjx4dj1iabl4crg61fgjxkniclxag5c7"; depends=[askpass curl jsonlite openssl sys]; }; + credentials = derive2 { name="credentials"; version="1.3.2"; sha256="1f18j3zrq8c9kah57xwahmmljsjg5qphlgamvx507ynvpq8pryig"; depends=[askpass curl jsonlite openssl sys]; }; creditmodel = derive2 { name="creditmodel"; version="1.3.0"; sha256="0cq21y6kzz2gf6kqqkhxlhhkjfm71kx4rqzwwfm1c5572x65x7hm"; depends=[cli data_table doParallel dplyr foreach ggplot2 glmnet rpart xgboost]; }; credsubs = derive2 { name="credsubs"; version="1.1.1"; sha256="19l3vsjxd9lvaf67l61x9l0j4y124p93dfqzw7rl1ya5sxbdzs7a"; depends=[]; }; credule = derive2 { name="credule"; version="0.1.4"; sha256="0kwjjkavch21grx845kdcansaj0g407v7z3wmhy4whra9ic12y76"; depends=[]; }; @@ -7607,7 +7635,7 @@ in with self; { crossmap = derive2 { name="crossmap"; version="0.3.0"; sha256="0dw1sg1by5805l72s5sbldznyp9qph9qrm4sizvqdx74bhb59s1y"; depends=[backports broom dplyr purrr rlang]; }; crossmatch = derive2 { name="crossmatch"; version="1.3-1"; sha256="082lrv2129mfhwlh99z3g8id3a29s8854skl152bl3ig8pk2gbjz"; depends=[nbpMatching survival]; }; crossrun = derive2 { name="crossrun"; version="0.1.0"; sha256="0br57nraqhs5f1cpidc8kd31izm82wvhiw9pxcdj9v51l9vifbmx"; depends=[Rmpfr]; }; - crosstable = derive2 { name="crosstable"; version="0.2.2"; sha256="0i87i0nnw6vs17c60q00inkd14mq50gq2sf4dx4pm5qyb51xjn0g"; depends=[checkmate dplyr ellipsis flextable forcats glue lifecycle officer purrr rlang stringr survival tibble tidyr tidyselect]; }; + crosstable = derive2 { name="crosstable"; version="0.3.2"; sha256="17agqfwcz04d69xsf7k6dybv66wlgjcvhsxym48p7sy8s19vrb6b"; depends=[checkmate dplyr flextable forcats glue lifecycle officer purrr rlang stringr survival tibble tidyr tidyselect]; }; crosstalk = derive2 { name="crosstalk"; version="1.2.0"; sha256="180y7mhpj17axpadwhh7s0qvrpdnag7g977vk256l96d6nmvlds2"; depends=[htmltools jsonlite lazyeval R6]; }; crossval = derive2 { name="crossval"; version="1.0.4"; sha256="0vshlyc6w4kfs03n56ylapiqgdyday7068wmfsphj4lhw322s4yp"; depends=[]; }; crosswalkr = derive2 { name="crosswalkr"; version="0.2.6"; sha256="1rxd6vy7vdrawmg7zkydl1f2wwklnzgh9dsnxbg966xrr3l9x1n9"; depends=[haven labelled readr readxl tibble]; }; @@ -7627,7 +7655,7 @@ in with self; { crsra = derive2 { name="crsra"; version="0.2.3"; sha256="1rkqm88zmvp9gw442cby6qpvfw4pfw65wz0gyl2h37w87c3wwvrw"; depends=[digest dplyr knitr purrr rcorpora readr tibble tidytext]; }; crsuggest = derive2 { name="crsuggest"; version="0.3.1"; sha256="13h6hfj3bvdb5wzq1f2m5s9crjmg0ijhfh87y1dmyimv76kr31k6"; depends=[dplyr mapview purrr sf units]; }; crtests = derive2 { name="crtests"; version="0.2.1"; sha256="0z8idz37dgwvi1q2vryldii7fn9yxd32gds77ml76jfplxbkikpd"; depends=[caret plyr stringr]; }; - crul = derive2 { name="crul"; version="1.1.0"; sha256="1kjsc5gkx5k5cfwlfjp2cjm9cdzq2l1m68bnrjmahw3lkz8wzdph"; depends=[curl httpcode jsonlite mime R6 urltools]; }; + crul = derive2 { name="crul"; version="1.2.0"; sha256="133g0skz4lifl8hm8pqdryd2m2drbrm6mdfzbbsrw8fg46di86my"; depends=[curl httpcode jsonlite mime R6 urltools]; }; crunch = derive2 { name="crunch"; version="1.28.2"; sha256="11llq25jnjy54j5w5mfkfm5cw4zf3lm76zcjmi7hy61y8w04bc4i"; depends=[abind crayon curl httpcache httr jsonlite]; }; crunchy = derive2 { name="crunchy"; version="0.3.3"; sha256="15w72kmizsxkj1wx3nqny6329m2041mxyzi4nxh8l3hfmaisb4qm"; depends=[crunch httpcache miniUI rstudioapi shiny]; }; cruts = derive2 { name="cruts"; version="1.1"; sha256="1ih6h9qk4yflzars00d61smjqj7s4bfvc2ikp6vlki9f6k012xcx"; depends=[lubridate ncdf4 raster sp stringr]; }; @@ -7667,7 +7695,7 @@ in with self; { ctmm = derive2 { name="ctmm"; version="0.6.1"; sha256="1c0pxjm91xcjdhq7mdjgmay9vs8cmk24495sf9g67hfjplf5gzzm"; depends=[Bessel data_table digest expm fasttime Gmedian gsl manipulate MASS numDeriv pbivnorm pracma raster rgdal shape sp statmod]; }; ctpm = derive2 { name="ctpm"; version="1.0.1"; sha256="1bycdh3mbimmfvv3yb50c8rwcmkbjj0jwnfiynsp2h56y3dmzc1r"; depends=[ape ClusterR ctmm slouch]; }; ctqr = derive2 { name="ctqr"; version="2.0"; sha256="0srrlgqxpp4a46wqr83zpb3xr49pf70b0n8bv9qp8ffak20d2hpj"; depends=[pch survival]; }; - ctrdata = derive2 { name="ctrdata"; version="1.7.1"; sha256="1fr41yfjsywbrbwly93k3xvlc2fhfmw2d2garx387hl2kg6yl6n0"; depends=[clipr curl httr jsonlite nodbi rvest stringi xml2]; }; + ctrdata = derive2 { name="ctrdata"; version="1.8.0"; sha256="15jaxwqhx8fwzsnjgqqxkc6ngd1pqcgn1ffyl1hpwr92p9j7vkf9"; depends=[clipr curl httr jsonlite nodbi rvest stringi xml2]; }; ctrialsgov = derive2 { name="ctrialsgov"; version="0.2.5"; sha256="0hdh1fdfaja8amf7fkvk1c6yif703132bvacq0j9pk5jr97czgpw"; depends=[DBI dplyr ggplot2 htmlwidgets lubridate Matrix plotly purrr rlang stringi tibble]; }; ctrlGene = derive2 { name="ctrlGene"; version="1.0.1"; sha256="0x7j11v7jj4k1jml6lrnjq79awhrvsm3pig1yxsd337jlfml3ra9"; depends=[psych]; }; ctsem = derive2 { name="ctsem"; version="3.5.4"; sha256="1gzv3i43nknd2fkjhrgwq8kf5z5vl52k5715sjzad9bmdjqf9wdl"; depends=[BH cOde data_table Deriv expm ggplot2 MASS Matrix mize mvtnorm pkgbuild plyr Rcpp RcppEigen RcppParallel rstan StanHeaders tibble]; }; @@ -7701,6 +7729,7 @@ in with self; { customizedTraining = derive2 { name="customizedTraining"; version="1.2"; sha256="0kjp22bzv7a3xynhm9xmabfcms21586p8caz1nk1w88qdvidqfqd"; depends=[FNN glmnet]; }; customsteps = derive2 { name="customsteps"; version="0.7.1.0"; sha256="1v6ks8j1mj623yai515xnrpx60hvilbrsn59r3zw30n68555cvw8"; depends=[dplyr generics magrittr purrr recipes rlang tibble tidyselect]; }; cusum = derive2 { name="cusum"; version="0.4.1"; sha256="0vjq3slkjdgls41xm637xkrg8jhv6y75xiyfcgpwrp32ixmakpcd"; depends=[checkmate data_table Rcpp]; }; + cusumcharter = derive2 { name="cusumcharter"; version="0.1.0"; sha256="0ljprnn48nfl8n0zmvc547rcg4cwrfhq3zjkkimgdnf7z2d130q6"; depends=[data_table ggplot2 rlang]; }; cutoff = derive2 { name="cutoff"; version="1.3"; sha256="0anrvmlvcxah620il3fkq6ldp7hx4nwdnzcpmfc5mhlsry0lp178"; depends=[do ROCit set survival]; }; cutoffR = derive2 { name="cutoffR"; version="1.0"; sha256="1801jylmpp4msyf07rhg4153kky1zvi4v0kkjb9d51dc7zkhh531"; depends=[ggplot2 reshape2]; }; cutpointr = derive2 { name="cutpointr"; version="1.1.1"; sha256="1lcs4dv13y9q6iwan7livlfaf5bqgg116br1knm4wk56jhxjaf4k"; depends=[dplyr foreach ggplot2 gridExtra purrr Rcpp rlang tibble tidyr tidyselect]; }; @@ -7717,7 +7746,7 @@ in with self; { cvequality = derive2 { name="cvequality"; version="0.2.0"; sha256="1im839vzfqylphp2vr20avnzkyl02n88fngbs63d4ik7c72d9992"; depends=[]; }; cvmdisc = derive2 { name="cvmdisc"; version="0.1.0"; sha256="19b9kxqgbk1d631l3jph87pzhk4zf3xd5q5j2xsrbqz8zmm96sn9"; depends=[CompQuadForm]; }; cvmgof = derive2 { name="cvmgof"; version="1.0.3"; sha256="0s78w8ivxzscn6jbwsw0m15n3xwgbbjdqwpp4dsy3gi0nsmngjyc"; depends=[lattice]; }; - cvms = derive2 { name="cvms"; version="1.3.2"; sha256="1716422vsgif1vnfv3c1606ina5lh78b3rpx89hifz6kgnxcgpsw"; depends=[checkmate data_table dplyr ggplot2 lifecycle lme4 MuMIn parameters plyr pROC purrr rearrr recipes rlang stringr tibble tidyr]; }; + cvms = derive2 { name="cvms"; version="1.3.3"; sha256="0a0ajrdmx9zi57sl5k5pdh4adrif3da6vbhnqll573draknbhavd"; depends=[checkmate data_table dplyr ggplot2 lifecycle lme4 MuMIn parameters plyr pROC purrr rearrr recipes rlang stringr tibble tidyr]; }; cvq2 = derive2 { name="cvq2"; version="1.2.0"; sha256="19k95xg2y3wd4mx3wvbrc1invybd446g13vsp3dv05nw2kx4f6w8"; depends=[]; }; cvwrapr = derive2 { name="cvwrapr"; version="1.0"; sha256="17h017p76y7sjcwik48ravygmyivj6kvkhqy5s9ch0nwzzcrzvj3"; depends=[foreach survival]; }; cwbtools = derive2 { name="cwbtools"; version="0.3.4"; sha256="1wj42n6phniwh6ms5xfmfazd8a0lkaf46wzv916i9xzsaf6hzqr7"; depends=[cli curl data_table fs httr jsonlite lifecycle pbapply R6 RcppCWB rstudioapi stringi xml2 zen4R]; }; @@ -7763,15 +7792,16 @@ in with self; { dad = derive2 { name="dad"; version="4.0.0"; sha256="154afqf3xwbdjp9qr3rlz06ln2cnwzafk3p9h73k0h2g5n8yp5b9"; depends=[DescTools e1071 ggplot2]; }; dadjoke = derive2 { name="dadjoke"; version="1.0"; sha256="118pacwc2qb3c5zbhr71zf4zj1ab2g4rs5h6bvrscjyd7a71jc3f"; depends=[]; }; dadjokeapi = derive2 { name="dadjokeapi"; version="1.0.2"; sha256="143xs3nkf6ynr83z5gggz318nvpnsbfmskl1ipavlzrqk785dlac"; depends=[beepr curl dplyr httr png]; }; - dae = derive2 { name="dae"; version="3.2-11"; sha256="0jrdfaw6aqv7k323yscsfpdkb3c4vi5ibncl6m96b9820pvycsz8"; depends=[ggplot2 plyr]; }; + dae = derive2 { name="dae"; version="3.2-13"; sha256="0mq94ah21p1glvsbvdmi2p7nlgz1bvq7w3rz2z3mdqq18kz6nkjw"; depends=[ggplot2 plyr]; }; daewr = derive2 { name="daewr"; version="1.2-7"; sha256="138hmmrm3zcdb2rcilvrasndvsq38agp9bpikd3xbb7j4z1nrsl7"; depends=[FrF2 lattice stringi]; }; daff = derive2 { name="daff"; version="0.3.5"; sha256="00zcdf215m7p3xm9yv571v09znhdqacxg69hb5b5j749mp4wdsyj"; depends=[jsonlite V8]; }; dafs = derive2 { name="dafs"; version="1.0-37"; sha256="1vdi57qaqdn39yf1ih2gzry02l289q4bffpksglsl4shs6bg2206"; depends=[s20x]; }; dagR = derive2 { name="dagR"; version="1.2.0"; sha256="0fkh2cb0sln8sfklcxjr2qf68wjd4gbqkfay0kynvk5jan58f018"; depends=[]; }; dagirlite = derive2 { name="dagirlite"; version="0.1.0"; sha256="12j5mfxcv32qgx1yklcq8yl2kx4lkxap4biywjrj0sjx6zj60f8l"; depends=[knitr Rdpack]; }; dagitty = derive2 { name="dagitty"; version="0.3-1"; sha256="1a78g2nr8i7mzzxyb6mfsqqgjyf3s4hwngvyd9vyygzcb79bai3x"; depends=[boot jsonlite MASS V8]; }; + dagwood = derive2 { name="dagwood"; version="0.1.3"; sha256="1z4a02b7z2wihsxm7p19478p3ix0f7j3kly2x43ib5207fh9m1yb"; depends=[dagitty]; }; daiR = derive2 { name="daiR"; version="0.9.0"; sha256="0kq633jpiagbpsj0190pzpxmz8df6niqc6lwqgrahxfpda798srk"; depends=[base64enc curl fs gargle glue googleCloudStorageR httr jsonlite magick pdftools purrr stringr]; }; - dalmatian = derive2 { name="dalmatian"; version="0.6.3"; sha256="13dww7v214khab7xyan53si7g5vliyk4ayr3jv9syblkvyzsxsqi"; depends=[coda dglm dplyr ggmcmc rlang tidyr]; }; + dalmatian = derive2 { name="dalmatian"; version="1.0.0"; sha256="0hpyg8sl5v87l1hxax9sj863hy9njdyp7hnsaw3cida365p0dswa"; depends=[coda dglm dplyr ggmcmc rlang tidyr]; }; dam = derive2 { name="dam"; version="0.0.1"; sha256="1b0fi3l8jxgpr9fwvi03giq7wm39msbh0c82ffgkh54a3bbf5blc"; depends=[]; }; dampack = derive2 { name="dampack"; version="1.0.1"; sha256="0mh3x0xgcipbd9341x3sfapysrd9m8aaakc1f53vwjj31c8vayqc"; depends=[dplyr ellipse ggplot2 ggrepel mgcv reshape2 scales stringr triangle truncnorm]; }; damr = derive2 { name="damr"; version="0.3.7"; sha256="12vr630m2az8xb8wndk8cyh7r8mwg3lvr7i3fcgqqxcq9rsgqm4r"; depends=[behavr data_table readr]; }; @@ -7795,13 +7825,13 @@ in with self; { data_table = derive2 { name="data.table"; version="1.14.2"; sha256="0arx5wna0sh0vf5q8rjhh8nqdmnvg2pdpbhljl9l0x4kwm8vjhgp"; depends=[]; }; data_tree = derive2 { name="data.tree"; version="1.0.0"; sha256="0pizmx2312zsym4m42b97q2184bg3hibvbdrblcga05xln84qrs0"; depends=[R6 stringi]; }; data360r = derive2 { name="data360r"; version="1.0.8"; sha256="0g3prfaqy7d5fdla4l31cj87vhzi945g22zr7pi2c2whlk4q4n09"; depends=[curl data_table jsonlite reshape2]; }; - dataCompareR = derive2 { name="dataCompareR"; version="0.1.3"; sha256="178293hk21qjczi7hyffhlwn0lxrz2k9nxsy7jykjdbsqalyxwli"; depends=[dplyr knitr markdown stringi]; }; + dataCompareR = derive2 { name="dataCompareR"; version="0.1.4"; sha256="1rapnlbi43z4sx4rq3fp8kpqhdj4g02fi3xglldbdp0c59f9vacg"; depends=[dplyr knitr markdown stringi]; }; dataMaid = derive2 { name="dataMaid"; version="1.4.1"; sha256="06jywq3llwafjnpklqimra456crdi752zxci6z1w0v7p8blf4vjw"; depends=[ggplot2 gridExtra haven htmltools magrittr pander rmarkdown robustbase stringi whoami]; }; dataMeta = derive2 { name="dataMeta"; version="0.1.1"; sha256="13xxayqxbps07h0xr5b7sb7q30gy5zm7jzzaq4k20fskkjrzhzcm"; depends=[dplyr]; }; - dataPreparation = derive2 { name="dataPreparation"; version="1.0.2"; sha256="01ns6qrqr3pm9qfzc2lky0nqcnyn7adg3pdjf461kqhb2pvzcimv"; depends=[data_table lubridate Matrix progress stringr]; }; + dataPreparation = derive2 { name="dataPreparation"; version="1.0.3"; sha256="0ywy6q5vdiw7a4xag9mwiccnj4sazflxq29mrw709iznpqxzxxb4"; depends=[data_table lubridate Matrix progress stringr]; }; dataReporter = derive2 { name="dataReporter"; version="1.0.2"; sha256="1rjm6j1s229j1j9yb5y1sdi03x22qzrkmhc09k4xdmwmwmpi3s58"; depends=[ggplot2 gridExtra haven htmltools magrittr pander rmarkdown robustbase stringi whoami]; }; dataRetrieval = derive2 { name="dataRetrieval"; version="2.7.10"; sha256="0lmd2j9inc29s2xk09gk7rbypgcqzpb2vmnnbmbg1liw96jsz5wl"; depends=[curl httr jsonlite lubridate readr xml2]; }; - datacleanr = derive2 { name="datacleanr"; version="1.0.2"; sha256="152n7y6hf4bds6dqlsd5ix5sr10k4idj3ywaa9ymzq5b2rp52xa3"; depends=[bslib clipr dplyr DT formatR fs glue htmltools htmlwidgets lubridate magrittr plotly purrr RColorBrewer rlang rstudioapi shiny shinyFiles shinyWidgets summarytools]; }; + datacleanr = derive2 { name="datacleanr"; version="1.0.3"; sha256="0mrfqm3lgb6sl2j35sfd00gb5121j9wmlff8k0vczr3sgmqz4dg8"; depends=[bslib clipr dplyr DT formatR fs glue htmltools htmlwidgets lubridate magrittr plotly purrr RColorBrewer rlang rstudioapi shiny shinyFiles shinyWidgets summarytools]; }; datadigest = derive2 { name="datadigest"; version="1.0.2"; sha256="1v4nwflrgjhwkrdlrjnqyq1spv1jkgxn1kmapml0zrvnvwf0r1a1"; depends=[haven Hmisc htmltools htmlwidgets jsonlite miniUI shiny tibble]; }; datadogr = derive2 { name="datadogr"; version="0.1.2"; sha256="10zbxb9gkymw78ras9y4wrifz7cxh3y630yzjcf9ds2p557vcjzp"; depends=[anytime dplyr glue httr lubridate purrr stringr tibble tidyr]; }; dataframeexplorer = derive2 { name="dataframeexplorer"; version="1.0.0"; sha256="1bl24z9hqhrs3k459b5hprwc7j639myvkx0qbfcyv3hmi7mbsd0q"; depends=[data_table dplyr magrittr openxlsx plyr stringr tibble tidyr]; }; @@ -7810,7 +7840,7 @@ in with self; { datagovindia = derive2 { name="datagovindia"; version="1.0.5"; sha256="1k04k2bz56d3k1nbx8p8pc1x3cxrdmnpgbrgmxl5i1qg3yashj91"; depends=[curl dplyr httr magrittr plyr rlang stringr]; }; datamap = derive2 { name="datamap"; version="0.1-1"; sha256="0qm4zb9ldg4wz1a7paj5ilr1dhyagq81rk9l2v43hmkv52sssgkv"; depends=[DBI]; }; datamart = derive2 { name="datamart"; version="0.5.2"; sha256="0c0l157fzkcp30ch4ymaalcx18zhz6sa5srr50w9izhbx3pmldxp"; depends=[base64 gsubfn markdown RCurl RJSONIO XML]; }; - datamods = derive2 { name="datamods"; version="1.1.5"; sha256="0nhii6csx4a2zk1ylv5b7f6wlz3rfp7hp2hww2z7p1s5v7pja6gz"; depends=[data_table DT htmltools readxl rio rlang shiny shinyWidgets tibble]; }; + datamods = derive2 { name="datamods"; version="1.2.0"; sha256="1k5nbpy40jzk6jhgigq74qxvb0ni44p3iwb342950qbnb8aniwxw"; depends=[data_table DT htmltools phosphoricons readxl rio rlang shiny shinyWidgets tibble]; }; datanugget = derive2 { name="datanugget"; version="1.0.0"; sha256="1ki4kgz6y9a313f07jml39pdxhadgs287rkpnlwvcw6kgj5qxala"; depends=[doSNOW foreach]; }; dataonderivatives = derive2 { name="dataonderivatives"; version="0.3.1"; sha256="0q1zd1l7l0hmbs1bx469d706rmprjbz2f2dgcnfp9wxfgqpfxkz1"; depends=[assertthat httr lubridate readr tibble]; }; dataone = derive2 { name="dataone"; version="2.2.1"; sha256="1gnzyjiwppx5mjwf38nm146vvmy6vlpqy9ibd2rc5f744pdvifxb"; depends=[base64enc datapack hash httr jsonlite parsedate plyr stringi stringr uuid XML]; }; @@ -7819,7 +7849,7 @@ in with self; { datapasta = derive2 { name="datapasta"; version="3.1.0"; sha256="0sqv29iv2rv50rbw1601rn8p7gv7rsw00djhl7h1znr0igzi5b82"; depends=[clipr readr rstudioapi]; }; dataprep = derive2 { name="dataprep"; version="0.1.4"; sha256="0knzwnhpj7ahrd12n56f65wmsmrapgnnqdl10b5cacf0idih12g5"; depends=[data_table doParallel dplyr foreach ggplot2 reshape2 scales zoo]; }; dataquieR = derive2 { name="dataquieR"; version="1.0.9"; sha256="0wc7vjjjffvmg9ahbqnygfrsk97n7k4y1y0ichvpr2nc8pfi7772"; depends=[dplyr emmeans ggplot2 ggpubr lme4 lubridate MASS MultinomialCI parallelMap patchwork R_devices reshape rlang robustbase]; }; - datardis = derive2 { name="datardis"; version="0.0.1"; sha256="1kf09c8sqvllyvjkjxkrxsqypg9wad7cm9mdqdhi0vlkj2d80h3b"; depends=[dplyr magrittr]; }; + datardis = derive2 { name="datardis"; version="0.0.2"; sha256="1ijwrbkz5dp19b225n6dcbjw264pad4imgm0yf1nqr106h92yjdv"; depends=[dplyr magrittr]; }; dataresqc = derive2 { name="dataresqc"; version="1.1.0"; sha256="1m7c93yk3dp1l5ysgscjvmv7z0xnmgaz4bkci4ljmmmn5a9v6r3c"; depends=[]; }; datarium = derive2 { name="datarium"; version="0.1.0"; sha256="1v98yxsxhfqlalz5qy3x5axb7fy067vf3y0qg7ngixphmy9qybym"; depends=[]; }; datarobot = derive2 { name="datarobot"; version="2.18.0"; sha256="1sjng65qjqbizyfdhc3iny04x56dpvbdb8mck2kl9lyayrjxp81g"; depends=[httr jsonlite yaml]; }; @@ -7899,7 +7929,7 @@ in with self; { deSolve = derive2 { name="deSolve"; version="1.30"; sha256="0j7mmg1mimdpql8f4i9dn920ciyyq80a5qnc4fq5xn5lyrx5vxir"; depends=[]; }; deTS = derive2 { name="deTS"; version="1.0"; sha256="08yq7vfcd8fv8qw2w0f1rnj3rzys9kslmkqspmiz6prmzqvj1zf1"; depends=[pheatmap RColorBrewer]; }; deTestSet = derive2 { name="deTestSet"; version="1.1.7.3"; sha256="0v59cczhwjrk7qgngmiyc7jvx11h808w4s3ww6l83n1ylx81fgll"; depends=[deSolve]; }; - deaR = derive2 { name="deaR"; version="1.2.3"; sha256="1lhs649kr7zm4m6qqlkk2qz0wn98vx674lri7b9p2r846zzwq9y9"; depends=[dplyr ggplot2 gridExtra igraph lpSolve plotly tidyr writexl]; }; + deaR = derive2 { name="deaR"; version="1.2.4"; sha256="1nkz9gac79rgyn8jlx35cx524c3v68bs6y0zbi2dbff9smxhbh93"; depends=[dplyr ggplot2 gridExtra igraph lpSolve plotly tidyr writexl]; }; deadband = derive2 { name="deadband"; version="0.1.0"; sha256="02pq3d0l0wy8bdlyfir3zf46j1ascx4qajyq5cf28yl62q6ngq5d"; depends=[TTR]; }; deal = derive2 { name="deal"; version="1.2-39"; sha256="0sw0v1mm004ky1gjw3dmvf2vb7nf2j9s9386bhqxijw63j7xnjd3"; depends=[]; }; deamer = derive2 { name="deamer"; version="1.0"; sha256="1xbxr78n6s1yhf192ab4syi1naqlwl9z4cxzchrkw80q7bxqfiz8"; depends=[]; }; @@ -7908,7 +7938,7 @@ in with self; { debugr = derive2 { name="debugr"; version="0.0.1"; sha256="0lfq0s0hibd00558vl3dmvrkzxjc7q62xr8sqzai0pv9a9lhixcn"; depends=[rprojroot rstudioapi]; }; decido = derive2 { name="decido"; version="0.3.0"; sha256="14y3z5ys5y3kffgm0dk92rx4vd1mi9jvxn7pqvwi4jhyx7wx06pw"; depends=[Rcpp]; }; decision = derive2 { name="decision"; version="0.1.0"; sha256="13d0yyg5zp7n3r92l0l1dsffxfph6vacrlzga9rz41l5pja72z6g"; depends=[]; }; - decisionSupport = derive2 { name="decisionSupport"; version="1.108"; sha256="1fhlj3601vj58zavh8csrpc28nqng2ldr5sq35cldhfngpqx6scv"; depends=[assertthat chillR dplyr fANCOVA ggplot2 ggstance magrittr msm mvtnorm nleqslv patchwork rriskDistributions stringr tidyr tidyselect]; }; + decisionSupport = derive2 { name="decisionSupport"; version="1.109"; sha256="1ijrnbxx6l500jzlwmjrgb6na09avdp0s4gral8kh9zdswnm380n"; depends=[assertthat chillR dplyr fANCOVA ggplot2 ggstance magrittr msm mvtnorm nleqslv patchwork rriskDistributions stringr tidyr tidyselect]; }; deckgl = derive2 { name="deckgl"; version="0.2.7"; sha256="0ifv6j0kbwayl60bf1rwd1h7424npqsqsvb44ngg7v0ik4bgbyfx"; depends=[base64enc htmltools htmlwidgets jsonlite magrittr readr tibble yaml]; }; declared = derive2 { name="declared"; version="0.7"; sha256="17jc2d2gw6ss8w5d6a5w1mh3h3yyg0mrpys8kqkb5hpfr19r16c7"; depends=[admisc]; }; decode = derive2 { name="decode"; version="1.2"; sha256="1qp0765gl3pgfdzjwj7icf3zminxxmrlw6gx3vj51y6c2y5ws4as"; depends=[]; }; @@ -7927,10 +7957,10 @@ in with self; { deepMOU = derive2 { name="deepMOU"; version="0.1.1"; sha256="1r05wg01nighmhs2r8z91w091fz2r1ryb1j0mi96knqqdjgcbh4i"; depends=[dplyr entropy extraDistr ggplot2 MASS Rfast skmeans]; }; deepNN = derive2 { name="deepNN"; version="1.1"; sha256="0iqvr8cl7ks5qvwsp1sx10r4jpbchf4mlsq0s3icr2cs3x3ryxvi"; depends=[Matrix]; }; deepboost = derive2 { name="deepboost"; version="0.1.6"; sha256="1nf9gjk9gjl2dz7cr3vh5lg8nxkbqwr82a132nw853axbdgbs9ga"; depends=[Rcpp]; }; - deepdep = derive2 { name="deepdep"; version="0.2.5.3"; sha256="15fz8xym5xskg9nrxapzbh32dvxw1pbwmr2r831hcsdx3gh71yd7"; depends=[cranlogs ggforce ggplot2 ggraph graphlayouts httr igraph jsonlite scales]; }; + deepdep = derive2 { name="deepdep"; version="0.2.5.4"; sha256="01k7jxzxfdwa638i1kr5p5dwn0szyvhaap2g1x013clvmj55n6rr"; depends=[cranlogs ggforce ggplot2 ggraph graphlayouts httr igraph jsonlite scales]; }; deepdive = derive2 { name="deepdive"; version="1.0.4"; sha256="0q4jjq11bd52bx0vqjxsh0fz1b72pfy4gpj5p19z7p4czf4a46c6"; depends=[data_table fastDummies plyr rpart stringr treeClust]; }; deepgmm = derive2 { name="deepgmm"; version="0.1.62"; sha256="1cllbq87xxzgba3a1prkjg7hdfkxjnmi8fgizqrlsvbxdhpg61yh"; depends=[corpcor mclust mvtnorm]; }; - deepgp = derive2 { name="deepgp"; version="0.2.1"; sha256="0ixb7giis7a5v6cnzl5i7xgs20sq5p7anna7izvj03hb4j4dd8nx"; depends=[doParallel foreach]; }; + deepgp = derive2 { name="deepgp"; version="0.3.0"; sha256="1sf1i29yqwb9s5y4lql0v54g1kfrdsm4a2bgfpi386swvk4p0nla"; depends=[BH doParallel foreach mvtnorm Rcpp RcppArmadillo]; }; deeplr = derive2 { name="deeplr"; version="2.0.0"; sha256="189kfcsd3cr0397krbfqh56x7h0v6i27s5jbfwr5zrf3jazllall"; depends=[httr purrr tibble tokenizers utf8]; }; deepnet = derive2 { name="deepnet"; version="0.2"; sha256="09crwiq12wzwvdp3yxhc40vdh7hsnm4smqamnk4i6hli11ca90h4"; depends=[]; }; deepredeff = derive2 { name="deepredeff"; version="0.1.1"; sha256="027dsmc3wmm61qc0vybn02c5dbnz5nwf80m9sywci4nhirz978ik"; depends=[Biostrings dplyr ggplot2 ggthemes keras magrittr purrr reticulate rlang seqinr tensorflow]; }; @@ -8047,7 +8077,7 @@ in with self; { dhglm = derive2 { name="dhglm"; version="2.0"; sha256="1918wkylldcdxjggly3a4yh4cv2nkig5bjfx0j79av633hahlg92"; depends=[boot car MASS Matrix sandwich]; }; dhh = derive2 { name="dhh"; version="0.0.1"; sha256="00kg2x1was85aq2vr15bak8y5p4mymbs8pbriijlbw64401djmb0"; depends=[]; }; di = derive2 { name="di"; version="1.1.4"; sha256="1w2gjhyi410z98d8wnhbd69jxm69nz4pmnr4fb09i70a90f53s25"; depends=[scales]; }; - diagis = derive2 { name="diagis"; version="0.1.5"; sha256="1vjj27nn1fjx7wpqpn5x7pir4kd7b4pz9y6mz8a4jby9imc5ypnk"; depends=[coda ggplot2 gridExtra Rcpp RcppArmadillo]; }; + diagis = derive2 { name="diagis"; version="0.2.2"; sha256="0bnyia73dcnygk6q4n4sxprhxj2pfmzcwmivk5kaxzagqi2zli8g"; depends=[coda ggplot2 gridExtra Rcpp RcppArmadillo]; }; diagmeta = derive2 { name="diagmeta"; version="0.4-1"; sha256="1xb49m5q7r1amv0kpr62yab3fb3xsaxmx3p0fgcmwiyvv8vzkdnw"; depends=[lme4 meta]; }; diagonals = derive2 { name="diagonals"; version="6.0.0"; sha256="1gpm7i22s3v4v7kfgph4k99n255cgzsvc2k11kdflm1zdlp5vg2v"; depends=[]; }; diagram = derive2 { name="diagram"; version="1.6.5"; sha256="1r3lyl0h7mk9cfg8smr3jydfkjdawaphnxibkxfjqa7029vkxh79"; depends=[shape]; }; @@ -8056,7 +8086,7 @@ in with self; { dialrjars = derive2 { name="dialrjars"; version="8.12.29"; sha256="08wvnmy4c6bfj8hpf8rhiwc0xidmz0y84s36dwjl4bfdqyw3q4r0"; depends=[rJava]; }; dials = derive2 { name="dials"; version="0.0.10"; sha256="1vhqcfwgic01pkw0i3000fvqq9yxfzsv26c0psfjhxkkdcz8h2px"; depends=[DiceDesign dplyr glue purrr rlang scales tibble vctrs withr]; }; diaplt = derive2 { name="diaplt"; version="1.3.0"; sha256="1kkqhkv3s8rrpqd05jidjdnqmlnb3s9f8rr34rfqj7k4nh0qzzcz"; depends=[]; }; - diathor = derive2 { name="diathor"; version="0.0.6"; sha256="1v3mqrb8jikwa0j94zg5ll5dxdyrx0f8vh6q5j1232152g5nqjpj"; depends=[data_table ggplot2 purrr stringdist stringr tibble tidyr vegan]; }; + diathor = derive2 { name="diathor"; version="0.0.9"; sha256="1p6y89vi37a8i3fwnj7rb0hdggk6qrxnsrw0sbpajzkwv1jvyal0"; depends=[algaeClassify data_table ggplot2 purrr stringdist stringr tibble tidyr vegan]; }; dice = derive2 { name="dice"; version="1.2"; sha256="0gic7lqnsdmwv3dbzwwmcwdfyfqlq8kpr2pciqphd1j2ligzwl3s"; depends=[gtools]; }; diceR = derive2 { name="diceR"; version="1.1.0"; sha256="01jh69b7x4agw5w2y9dal9g0nbq8s1ff36vcz2xfsjc0vi76irfs"; depends=[abind assertthat class clue clusterCrit clValid dplyr ggplot2 infotheo klaR magrittr mclust NMF purrr RankAggreg Rcpp stringr tidyr yardstick]; }; dichromat = derive2 { name="dichromat"; version="2.0-0"; sha256="1l8db1nk29ccqg3mkbafvfiw0775iq4gapysf88xq2zp6spiw59i"; depends=[]; }; @@ -8068,6 +8098,7 @@ in with self; { didrooRFM = derive2 { name="didrooRFM"; version="1.0.0"; sha256="12clfnbm56jwldw0afb0nb0argnd97mx7369jiywhxy0p4xqibqq"; depends=[dplyr]; }; dief = derive2 { name="dief"; version="1.2"; sha256="1i4icdfqvw7imaj1fh392zmzfyz8aqlv9s5naqxm1pm0lqfxl6ca"; depends=[flux fmsb ggplot2 plyr]; }; dielectric = derive2 { name="dielectric"; version="0.2.3"; sha256="1p1c0w7a67zxp1cb99yinylk5r1v89mmpfybcy94ydydhydbhivk"; depends=[]; }; + dietr = derive2 { name="dietr"; version="1.1.2"; sha256="076j5w5d9ggfndxjjc52mq93h7fnz0fqv0prs1lv1j3m8f3693xw"; depends=[rfishbase]; }; diezeit = derive2 { name="diezeit"; version="0.1-0"; sha256="0rq1k08byvqn99wpql7drnrcxlzcqrcxixh7bczbc8dv1hhsgk9i"; depends=[brew httr jsonlite]; }; difNLR = derive2 { name="difNLR"; version="1.3.7"; sha256="1fvil2zys3i8raqkmm8s5p6dyxziwcgchxr1m7q69flms6cpg8gv"; depends=[calculus CTT ggplot2 msm nnet plyr reshape2 VGAM]; }; difR = derive2 { name="difR"; version="5.1"; sha256="1cd5kaal5mjrbj1l9ki2wbqasdxphgc2yhaf4xwgbh1nr2zkhr02"; depends=[deltaPlotR lme4 ltm mirt]; }; @@ -8100,10 +8131,10 @@ in with self; { dimensionsR = derive2 { name="dimensionsR"; version="0.0.2"; sha256="1g9yjrq7xnqh427kzmhhmdavykzxidv51i2wx2w0kwhl6fqdd2fk"; depends=[httr jsonlite]; }; dina = derive2 { name="dina"; version="2.0.0"; sha256="1sq7998xc5qhvd8clc8r32ch7axinh2a2dc7i1w2p148wv130yhd"; depends=[Rcpp RcppArmadillo rgen simcdm]; }; dinamic = derive2 { name="dinamic"; version="1.0"; sha256="0mx72q83bbwm10ayr3f1dzwr5wgz7gclw7rh39yyh95slg237nzr"; depends=[]; }; - dineR = derive2 { name="dineR"; version="1.0.0"; sha256="012355jjg7qzv42nbpcdj99ikschdd1jhxfymv6p5z305rdp2qab"; depends=[MASS Matrix progress]; }; + dineR = derive2 { name="dineR"; version="1.0.1"; sha256="1nnfg4kylb8ivwij1qdn9qv5jciinl4jk4gghfw97jphp4da91pw"; depends=[MASS Matrix progress]; }; dineq = derive2 { name="dineq"; version="0.1.0"; sha256="1xrhrdc970f7hm9xng9z7xmshnmmz89cn3gmnyabzprx44ccr9sl"; depends=[boot Hmisc]; }; dint = derive2 { name="dint"; version="2.1.3"; sha256="0nxppn7gx4sjwn7jns5bwbqfid3jkbsx2lxi0rjdkbsawy77fc85"; depends=[]; }; - dipm = derive2 { name="dipm"; version="1.2"; sha256="1irrq1iidkqc6j7bg5c0fpgyfhnbay6b3fjv4h5amqgarchb1igg"; depends=[ggplot2 partykit survival]; }; + dipm = derive2 { name="dipm"; version="1.5"; sha256="1mqannl493mic8qx75qq8147jb6hddsxsk7q8h51zjb3zr6b9hjp"; depends=[ggplot2 partykit survival]; }; diproperm = derive2 { name="diproperm"; version="0.2.0"; sha256="0qh8zzpbsjfwh8q833n5pchb6dakqdza77ab7vmsidfbzndka11m"; depends=[dplyr DWDLargeR e1071 ggplot2 gridExtra lemon Matrix sampling SparseM usethis]; }; dipsaus = derive2 { name="dipsaus"; version="0.1.9"; sha256="0rpx6nasgf1dcrksvp7zp4pc1gjx64vbcxa0f6189agsnwz6w4yj"; depends=[base64enc base64url cli digest fastmap future future_apply jsonlite progressr R6 Rcpp RcppParallel rlang rstudioapi shiny startup stringr synchronicity]; }; diptest = derive2 { name="diptest"; version="0.76-0"; sha256="10629vwn6r2949jjrmj5slbb5v0vnm3w0v8mrl7ws68m2sxmx2jh"; depends=[]; }; @@ -8149,6 +8180,7 @@ in with self; { dispmod = derive2 { name="dispmod"; version="1.2"; sha256="16r6is0pchzc9mxpz0c44f72j76vsh3j9damalcxajrha06dkdq4"; depends=[]; }; disposables = derive2 { name="disposables"; version="1.0.3"; sha256="0q5wacjclspn2fh7z1pg2l67ll51n75wck5h2fdq2vxy3qn3vwis"; depends=[]; }; dispositionEffect = derive2 { name="dispositionEffect"; version="1.0.0"; sha256="0vx87xylpx3np6afwwylzwp0nb9g8r04ngn8mgr88ycys815fkqw"; depends=[dplyr lubridate magrittr progress purrr rlang]; }; + disprose = derive2 { name="disprose"; version="0.1.1"; sha256="1r8q719bzs728li6x7c1d60n05lvgrcqinfq0a9al9y92q2y5zkp"; depends=[]; }; dissCqN = derive2 { name="dissCqN"; version="0.1.0"; sha256="142f4ggzwdhf2vm9kisayna9a5j17mmy2jckhjrvxh4k5dc3ssf6"; depends=[]; }; dissUtils = derive2 { name="dissUtils"; version="1.0"; sha256="00fzlmkdfw2s3k824wp2pk3v7cvxnywi1hfp86g4mm95z2qlw9br"; depends=[]; }; dissever = derive2 { name="dissever"; version="0.2-3"; sha256="1lgs5nmv3lpm4gsryxvcwiwibvvg9flv23q8maisp77x49c18qcp"; depends=[boot caret dplyr foreach magrittr plyr raster sp viridis]; }; @@ -8206,15 +8238,15 @@ in with self; { dlib = derive2 { name="dlib"; version="1.0.3.1"; sha256="1rchl4f3zj0azz8d4n139daba2gz6vnm60jq45vgc9gphk2mrnnb"; depends=[Rcpp]; }; dlm = derive2 { name="dlm"; version="1.1-5"; sha256="1aksm66sfa7ipl5xgs4j5giac7q2m744wjl40mva56xn6i674h4r"; depends=[]; }; dlnm = derive2 { name="dlnm"; version="2.4.7"; sha256="0mbww28n95vnd6wrn1b4mfsdvnyffa8mr6ws4jqmqdc23nydl9p4"; depends=[mgcv nlme tsModel]; }; - dlookr = derive2 { name="dlookr"; version="0.5.1"; sha256="1rlm6kwzvng3dhr6lrd6fklnz4pva8pda0rkbvg8x1k4skyw27rk"; depends=[dplyr extrafont ggplot2 gridExtra hrbrthemes htmltools kableExtra knitr mice pagedown partykit purrr reactable rlang rmarkdown shiny tibble tidyr tidyselect]; }; + dlookr = derive2 { name="dlookr"; version="0.5.3"; sha256="04cq0nai7aqc80r0j0fx6fhizz21waxl8hyf9y6384nywymx6ani"; depends=[dplyr ggplot2 gridExtra hrbrthemes htmltools kableExtra knitr mice pagedown partykit purrr reactable rlang rmarkdown shiny showtext sysfonts tibble tidyr tidyselect]; }; dlr = derive2 { name="dlr"; version="1.0.1"; sha256="13gr8rk8igbypq9mg00pyk2pjczxr1ghkj5287gijxnxch7zdknc"; depends=[digest fs rappdirs rlang]; }; dlsem = derive2 { name="dlsem"; version="2.4.6"; sha256="1h3bwqqpfjkl41b2mbfhsj0pi9kri0h0i28wiid6arjrmm87nsf8"; depends=[graph Rgraphviz]; }; dlstats = derive2 { name="dlstats"; version="0.1.4"; sha256="1j415v3kajn269md046b05pwklqwm4rwk2f7q3mwax9yx4m5nc0n"; depends=[ggplot2 jsonlite magrittr RColorBrewer scales]; }; - dm = derive2 { name="dm"; version="0.2.5"; sha256="0n8d4d00pz4l6if28q7614xvj6d5k4zhhpvijway97l6skdcg2hg"; depends=[backports cli DBI dplyr ellipsis glue igraph lifecycle magrittr memoise pillar purrr rlang tibble tidyr tidyselect vctrs]; }; + dm = derive2 { name="dm"; version="0.2.6"; sha256="0jjsl70gwpa9syprj02way20l2675g090ai1633i3bh98slbkkxj"; depends=[backports cli DBI dplyr ellipsis glue igraph lifecycle magrittr memoise pillar purrr rlang tibble tidyr tidyselect vctrs]; }; dma = derive2 { name="dma"; version="1.4-0"; sha256="003snr09hazszwqnvjrbv8vyz6ihgcfcfhrlshg451dddn920615"; depends=[MASS]; }; dmacs = derive2 { name="dmacs"; version="0.1.0"; sha256="1prw6h8sj6fcpajg6xwqhi8v5jfl74mbjdjrdy524miw56fh9h0r"; depends=[lavaan MplusAutomation]; }; dmai = derive2 { name="dmai"; version="0.4.0"; sha256="0ma89jl0l598sffpikvjj40f2djjcnjq29k6y1bav4dm2g51qgmq"; depends=[dplyr ggplot2 magrittr stringr tibble tidyr]; }; - dmbc = derive2 { name="dmbc"; version="0.4.0"; sha256="1m8zwy18phlxpmlp8rf07d615fjg15gqs5wdfm78d49266032jay"; depends=[abind bayesplot coda ggplot2 ggrepel MCMCpack modeltools pcaPP Rcpp RcppArmadillo RcppProgress robustbase]; }; + dmbc = derive2 { name="dmbc"; version="1.0.0"; sha256="0hfcc12v73c0x11jvp0pm2ddm2qd1fdv8667k67r7d1zi0cp2i5g"; depends=[abind bayesplot coda ggplot2 ggrepel MCMCpack modeltools pcaPP Rcpp RcppArmadillo RcppProgress robustbase]; }; dml = derive2 { name="dml"; version="1.1.0"; sha256="0z1dalgxh5nhrac49vh60d5awzjylc8b8mn5fk379c324milm59l"; depends=[lfda MASS]; }; dmlalg = derive2 { name="dmlalg"; version="1.0.1"; sha256="1jgypgclv9609i2vfwskjy61vl3giv7ia79d3d20ly324khxalhb"; depends=[glmnet lme4 matrixcalc randomForest]; }; dmm = derive2 { name="dmm"; version="2.1-7"; sha256="0zn7d2lr2vig8q6h5dd5zk7ra1f0mkm6pszl3v06aghcflg63ng3"; depends=[MASS Matrix nadiv pls robustbase]; }; @@ -8260,7 +8292,7 @@ in with self; { domino = derive2 { name="domino"; version="0.3.1"; sha256="0f67w0z5jy82kgm3l1rji430ayigw30vmmwp3i1nz0xibsx7jxv4"; depends=[]; }; domir = derive2 { name="domir"; version="0.2.0"; sha256="0zy0ymsx6m6d26szpk3h85yknqraa7gxi8765qdxjs1cajl0dgll"; depends=[]; }; donut = derive2 { name="donut"; version="1.0.2"; sha256="0idynkhcdn9va32m1n1rxjyb7ghbkhyy1959wks2bn1a7k4yg87i"; depends=[]; }; - doolkit = derive2 { name="doolkit"; version="1.0.0"; sha256="0dcn4a04ch5ssa80lfjhip4sff48i6wm0mc5wj52zmkq8b24yr48"; depends=[concaveman ggplot2 igraph MASS Morpho rgl Rvcg sp tis usethis]; }; + doolkit = derive2 { name="doolkit"; version="1.0.1"; sha256="09kgd1ca1aacvh9gjfns85m36zl5bj095j21avn1jgp8h5mk7301"; depends=[concaveman ggplot2 igraph MASS Morpho rgl Rvcg sp tis usethis]; }; doremi = derive2 { name="doremi"; version="1.0.0"; sha256="005kp6f4jh8y1ykhri3mjnvc9w66b1a51bji574rkbxd1ans6mal"; depends=[data_table deSolve futile_logger ggplot2 gridExtra lme4 lmerTest zoo]; }; dosearch = derive2 { name="dosearch"; version="1.0.8"; sha256="1jymk03snrfmr9da7h7l9823mzlcn6y4z6ay6nzi82n08d9xmp06"; depends=[Rcpp]; }; dosedesignR = derive2 { name="dosedesignR"; version="0.2.4"; sha256="0c8rilx4afih457f9gafgijm569g366lp4wms0vhc0f9kgr1z8h3"; depends=[DoseFinding DT ggplot2 lattice latticeExtra shiny shinyjs]; }; @@ -8271,6 +8303,7 @@ in with self; { dotdot = derive2 { name="dotdot"; version="0.1.0"; sha256="0d8inv2m7pkk6dnv9j9zai4lhghcg656l46d00rhp604rbhzlmw9"; depends=[]; }; dotenv = derive2 { name="dotenv"; version="1.0.3"; sha256="0dclwqg2hxdly8z3cckcskcll3dfax6g14h1xzjzdfwahhrbr5wb"; depends=[]; }; dotgen = derive2 { name="dotgen"; version="0.1.0"; sha256="12dvn52ggmkj2q6whi8s2hh9fpg7jcg20bgx32jxzh4cb1zxnksz"; depends=[mvtnorm]; }; + dotprofile = derive2 { name="dotprofile"; version="0.0.1"; sha256="10vm8s1sk4i2930zzswgwy1y873x8byfr7xfb8xq6cdk9ci7l741"; depends=[cli R6]; }; dotwhisker = derive2 { name="dotwhisker"; version="0.7.4"; sha256="0awqdxb98vjafvjvx6fkmlyy6c2lp52la2b69964bawx5lgwj16b"; depends=[dplyr ggplot2 ggstance gtable margins parameters purrr rlang stringr]; }; doubcens = derive2 { name="doubcens"; version="1.1"; sha256="1hn65n67by3xqbcnaf5jja5pli0g6wpbbz2sfzd7i2nms7kiywhp"; depends=[]; }; double_truncation = derive2 { name="double.truncation"; version="1.7"; sha256="0hrb1qli7i4jhc705rb02zbq2nyk0i406bb8gpy4jrzygjjbq3g0"; depends=[]; }; @@ -8278,6 +8311,7 @@ in with self; { downlit = derive2 { name="downlit"; version="0.4.0"; sha256="10zvrqdpwavdy97h3q26bqh3k63z61fmc04w9vwsnvmnv8hnh3vl"; depends=[brio desc digest evaluate fansi memoise rlang vctrs yaml]; }; downloader = derive2 { name="downloader"; version="0.4"; sha256="1axggnsc27zzgr7snf41j3zd1vp3nfpmq4zj4d01axc709dyg40q"; depends=[digest]; }; downloadthis = derive2 { name="downloadthis"; version="0.2.1"; sha256="12df3cxg1x84f3sibllykd5wqs11mr4nlyv8hj8bh9d6wjvwj2li"; depends=[base64enc bsplus fs ggplot2 htmltools magrittr mime readr writexl zip]; }; + downscale = derive2 { name="downscale"; version="4.2-0"; sha256="1ha36jiahvrg75qwzp9wpgnqqizw6ivc02q24fyz5frzssda6wd8"; depends=[cubature minpack_lm raster Rmpfr sp]; }; downscaledl = derive2 { name="downscaledl"; version="1.0"; sha256="0lqxngzpxj65b48j5w0n8dg6fp4lgg5zpgxc2wj6d9wh5f97l71b"; depends=[dplyr keras magrittr raster Rcpp RcppArmadillo rgdal rstack sp tensorflow]; }; downsize = derive2 { name="downsize"; version="0.2.2"; sha256="18b9shd79z0bsdnp0apqqwv6c73j4wnfiv41ywqz761nmxbldxbn"; depends=[magrittr R_utils]; }; dowser = derive2 { name="dowser"; version="0.1.0"; sha256="1k85m4xm1kkkzk19kxim83i3pbl22mz2lql4cw0ml7wmx0m1pva9"; depends=[alakazam ape Biostrings dplyr ggplot2 ggtree gridExtra markdown phangorn phylotate RColorBrewer rlang shazam stringr tidyr tidyselect]; }; @@ -8359,7 +8393,7 @@ in with self; { dualtrees = derive2 { name="dualtrees"; version="0.1.4"; sha256="05mxwiwnv48jf6ya5qmfc7g2w8wkzhk56k9g0gr2m4cpfab7d5h2"; depends=[]; }; duawranglr = derive2 { name="duawranglr"; version="0.6.7"; sha256="0hxmvyl81xlp3vv1w7462cjfa9hdz5lki0p5pn0ik7dv5aap3wbq"; depends=[digest dplyr haven readr readxl]; }; dub = derive2 { name="dub"; version="0.2.0"; sha256="066lzyk44380mf17vx4db4a3a4rs7zl85mj5hjg172khjbqnbixw"; depends=[]; }; - duckdb = derive2 { name="duckdb"; version="0.3.0"; sha256="07bv2kqnghmcdzrp6kmfckgckvl9dgmb2bj7895il30r9hxy9gcx"; depends=[DBI]; }; + duckdb = derive2 { name="duckdb"; version="0.3.1-1"; sha256="1v9l2vlg0xhyj07q6kplqksw48fiivlfjgpc74x11kbmilz768qg"; depends=[DBI]; }; duckduckr = derive2 { name="duckduckr"; version="1.0.0"; sha256="1wki8xvqp5hr27iafd9jbryl9faywfkdkpn0pa0afywbic39k2cm"; depends=[crul jsonlite]; }; dumbbell = derive2 { name="dumbbell"; version="0.1"; sha256="0v0b4wbfskvcnzx10z9v4rf3mq8ccswz63pd6i1z7mggnwv38ps5"; depends=[data_table dplyr ggplot2 rlang rstatix tidyr tidyverse]; }; dummies = derive2 { name="dummies"; version="1.5.6"; sha256="01f84crqx17xd6xy55qxlvsj3knm8lhw7jl26p2rh2w3y0nvqlbm"; depends=[]; }; @@ -8400,6 +8434,7 @@ in with self; { dynplot = derive2 { name="dynplot"; version="1.1.1"; sha256="107j4cpvdy52gywaiw1pyxrpx1j2ihr101hmqghsgihm9qkmabb4"; depends=[assertthat dplyr dyndimred dynfeature dynutils dynwrap GA ggforce ggplot2 ggraph ggrepel igraph MASS patchwork purrr reshape2 tibble tidygraph tidyr vipor]; }; dynpred = derive2 { name="dynpred"; version="0.1.2"; sha256="111ykasaiznn3431msj4flfhmjvzq7dd1mnzn1wklc5ndix1pvf9"; depends=[survival]; }; dynprog = derive2 { name="dynprog"; version="0.1.1"; sha256="11zsx2c4hv7k22pw85aa01zk4r0qpzwnf73ynylkfxfbi87rda9s"; depends=[rlang]; }; + dynr = derive2 { name="dynr"; version="0.1.16-27"; sha256="0rrzi2x19sdi42vpdi8a3lpsbna5kpf2rzvpf3m632b16wca2vnx"; depends=[car deSolve fda ggplot2 latex2exp magrittr MASS Matrix mice numDeriv plyr Rdpack reshape2 stringi tibble xtable]; }; dynsbm = derive2 { name="dynsbm"; version="0.7"; sha256="169yk539vynjbn89q6vs3l3fx7hk8n3i1msa4jws5vypgljc2rir"; depends=[RColorBrewer Rcpp riverplot]; }; dynsim = derive2 { name="dynsim"; version="1.2.3"; sha256="1fk23cp2hvkn7msxrdc9cnm4pmcmhcdf3q6rwm507bniigrswnx4"; depends=[ggplot2 gridExtra MASS]; }; dynsurv = derive2 { name="dynsurv"; version="0.4-2"; sha256="0gy9q7l7k37bxm3d37adpvqa45lvr048a309jqc052f179v38mlb"; depends=[BH data_table ggplot2 nleqslv splines2 survival]; }; @@ -8421,7 +8456,6 @@ in with self; { eRTG3D = derive2 { name="eRTG3D"; version="0.6.4"; sha256="1illpky5p3jappqia1334ra804h18l065r1vkfvpjw8y3hxg2ls2"; depends=[CircStats ggplot2 pbapply plotly raster rasterVis tiff]; }; eRm = derive2 { name="eRm"; version="1.0-2"; sha256="0smym010kswc5vx90qr3x1vl16xj1x1i54rvrj006dc4agc1vmlk"; depends=[colorspace lattice MASS Matrix psych]; }; eSDM = derive2 { name="eSDM"; version="0.3.7"; sha256="0rv5hhjsdkq0837822d52xfvfbj9qx1kjmqj8wyny335gv631205"; depends=[dplyr magrittr purrr rlang ROCR sf shiny units]; }; - eSIR = derive2 { name="eSIR"; version="0.4.1"; sha256="0vni057bnvjyj0s9vl6rr4qh3pz8h60fwck0xqzyl86psw73g1dh"; depends=[chron coda data_table ggplot2 gtools reshape2 rjags scales]; }; eadrm = derive2 { name="eadrm"; version="0.1.3"; sha256="0bb9glwqkzr1px03l4dxvgzm7zkrp3349l5fwfmw6jp0fxdl98ij"; depends=[]; }; eaf = derive2 { name="eaf"; version="2.2"; sha256="13q6g6vkwb3i2cdwff4qw0bz21qmd9xx5wacmdsp7s312vf6lwyv"; depends=[modeltools Rdpack]; }; earlyR = derive2 { name="earlyR"; version="0.0.5"; sha256="0978vv48sj1hs61rdb3xv02s8qz03jcm1c8q1mbb3d033x1q7k22"; depends=[distcrete EpiEstim epitrix ggplot2]; }; @@ -8432,7 +8466,7 @@ in with self; { earthtones = derive2 { name="earthtones"; version="0.1.1"; sha256="17biiw0ig8i8ihc2f8csp0bqryygg27ic2v1vrf81ax3qzhngy4l"; depends=[ggmap]; }; easyAHP = derive2 { name="easyAHP"; version="0.1.1"; sha256="161mn90j9ph1p9277mj61hch8ndcv7k9izs32q93y5wp474gzynd"; depends=[]; }; easyCODA = derive2 { name="easyCODA"; version="0.34.3"; sha256="1s1zjjvswl3444m84n6c5sznva4y19kcm171xkcy1zdx3wqmd2m3"; depends=[ca ellipse vegan]; }; - easyDes = derive2 { name="easyDes"; version="5.0"; sha256="1msybgv4b7xlvp93lk64mdrqprr5qqc9ma1bz7glchhlkyyl8c21"; depends=[multcomp PMCMRplus]; }; + easyDes = derive2 { name="easyDes"; version="6.0"; sha256="12p7ls0q9srrz5h0f0996mmw33shrfbya481s0d5d509vbw8ik6d"; depends=[multcomp PMCMRplus]; }; easyNCDF = derive2 { name="easyNCDF"; version="0.1.0"; sha256="1p6b1lcbw2ix6hqqghgfid5yd58yqg1cqnj99r5svli3ivr7x6js"; depends=[abind ClimProjDiags ncdf4]; }; easyPSID = derive2 { name="easyPSID"; version="0.1.2"; sha256="0npih5xpf2a5xw2iz68z9ckm8d4cpradzzdn50rdpg4gqvaq7azp"; depends=[foreign LaF stringr]; }; easyPubMed = derive2 { name="easyPubMed"; version="2.13"; sha256="1wd8idyqz7kgygp34mjp2abx82775ry8l07vsqdlqnc6fdnvg55d"; depends=[]; }; @@ -8442,7 +8476,7 @@ in with self; { easyalluvial = derive2 { name="easyalluvial"; version="0.3.0"; sha256="02l0jy3bwp3qrz6g5iknl2fsfqi6a6wzn8q18k8518xczlsn1gbd"; depends=[dplyr forcats ggalluvial ggplot2 ggridges gridExtra magrittr progress progressr purrr randomForest RColorBrewer recipes rlang stringr tibble tidyr]; }; easyanova = derive2 { name="easyanova"; version="7.0"; sha256="1zpwh3r1r0n11hgqzph8f2aac44qb6rpnhk73hcblq0f9vs0an55"; depends=[nlme]; }; easycsv = derive2 { name="easycsv"; version="1.0.8"; sha256="1i2k5372b6a5pypk6m0rsvvkcy0y51pvh57a60rpgqk8q0yq8pig"; depends=[data_table]; }; - easylabel = derive2 { name="easylabel"; version="0.2.2"; sha256="0dqs0qqha6diz1nn8zkd27yjjirzgs4bdpd0h5cgq5d7jm465ixv"; depends=[DT gtools plotly RColorBrewer shiny shinybusy shinycssloaders splus2R]; }; + easylabel = derive2 { name="easylabel"; version="0.2.4"; sha256="1pqdaymcrqjdqj0fhb1q7i1i8p7r7iwzcn08mcq5wlwr52kcpvfy"; depends=[DT gtools plotly RColorBrewer shiny shinybusy shinycssloaders splus2R]; }; easynls = derive2 { name="easynls"; version="5.0"; sha256="1ma2q4y5dxk6q99v880vqfsgy1fha96j7pi8ch699l0pi6bx0d6c"; depends=[]; }; easypackages = derive2 { name="easypackages"; version="0.1.0"; sha256="00paxdwz4bw3imqhcsw6hj1h0gmnpishlxcj79n826vhdy23jc4y"; depends=[assertthat devtools]; }; easypower = derive2 { name="easypower"; version="1.0.1"; sha256="1vf0zv55yf96wjxja6ifdjvgc9nw0jl0hnc1ygyjd8pmwbgdz9bl"; depends=[pwr]; }; @@ -8621,7 +8655,7 @@ in with self; { emIRT = derive2 { name="emIRT"; version="0.0.11"; sha256="1h91q9vi9cv14bmkaakyynw2z9sx51w0c2kw2in0x91wx7scmd0p"; depends=[pscl Rcpp RcppArmadillo]; }; emayili = derive2 { name="emayili"; version="0.6.1"; sha256="05s14p5llvfwzd11wf73zd5xgv4hzpinpg74bnd94z8380x8p6ls"; depends=[base64enc commonmark curl digest dplyr glue htmltools httr logger magrittr mime purrr rmarkdown stringr tidyr urltools vctrs xfun xml2]; }; emba = derive2 { name="emba"; version="0.1.8"; sha256="1bzp1cplr977w87bm0pvabvgai91a3j51pfjn4lc1ncjbr2v6wl0"; depends=[Ckmeans_1d_dp dplyr igraph purrr readr rje stringr tibble tidyr tidyselect usefun visNetwork]; }; - embed = derive2 { name="embed"; version="0.1.4"; sha256="13vz3px2vvzr56kynqc6vcy7swzq9v021g66dliychqyx7r9q49l"; depends=[dplyr generics keras purrr recipes rlang rsample tensorflow tibble tidyr uwot withr]; }; + embed = derive2 { name="embed"; version="0.1.5"; sha256="029ysbfvgb1sb14xs0p6dswcxbpgnhvshhs2hcqbrizysb7c7bj2"; depends=[dplyr generics keras lifecycle purrr recipes rlang rsample tensorflow tibble tidyr uwot withr]; }; embryogrowth = derive2 { name="embryogrowth"; version="8.2"; sha256="1dq3vz70ai63mfmhfs9mavmx3kqsbdy2m7pfv74lk3gj42rzdbvx"; depends=[deSolve HelpersMG numDeriv optimx]; }; emdbook = derive2 { name="emdbook"; version="1.3.12"; sha256="0ls3zxxlwmdv7zn1v9i1y9zc2sn0hbgmyjvsj7zn3ajsw7wwlih6"; depends=[bbmle coda lattice MASS plyr]; }; emdi = derive2 { name="emdi"; version="2.1.0"; sha256="0a3rz0x06838l7ylpkk55vfxaxfh5hkab102vshsl8yzzsmxn72k"; depends=[boot formula_tools ggplot2 gridExtra HLMdiag MASS moments MuMIn nlme openxlsx parallelMap readODS reshape2 saeRobust spdep stringr]; }; @@ -8631,7 +8665,7 @@ in with self; { emld = derive2 { name="emld"; version="0.5.1"; sha256="0cvnfvzskvpcqzs6fwrpjcqrc6yrfciliy9jj0c9h4iyag0g0b9b"; depends=[jsonld jsonlite xml2 yaml]; }; emma = derive2 { name="emma"; version="0.1-0"; sha256="0psd8lrbcqla8mkhp0wlassaaimgwlmqy5yv2wwcq59mc5k1v27f"; depends=[clusterSim earth]; }; emme2 = derive2 { name="emme2"; version="0.9"; sha256="035s4h95ychqb14wib0dqbg4sjy9q01fsryr0ri25g1hsi5f8lpm"; depends=[reshape]; }; - emmeans = derive2 { name="emmeans"; version="1.7.0"; sha256="1ig94mjifhhygznv2xv1gl8hdvk618w5fcmkaj1xmpwpc64m9dnl"; depends=[estimability mvtnorm numDeriv xtable]; }; + emmeans = derive2 { name="emmeans"; version="1.7.1-1"; sha256="1pjh09p8sc2jskhlrhk1rnb3ng4sj9vwqqw5vd2n5yd03snyl0bb"; depends=[estimability mvtnorm numDeriv xtable]; }; emoa = derive2 { name="emoa"; version="0.5-0.1"; sha256="0rkr4d4fyqxmsrlbzar27z97qkw4cl1dkvfnhbdwpgg9fi1cixmz"; depends=[]; }; emoji = derive2 { name="emoji"; version="0.2.0"; sha256="06bsz0hsaqa2lzqpyqhsfp07p8ri5frvhiza0s8aali7w3cr2szh"; depends=[glue stringr tibble]; }; emojifont = derive2 { name="emojifont"; version="0.5.5"; sha256="1hhrwilv36hd9gs1kcl2zsi6519md0h9aixjrm6lfclxvz8r6k1i"; depends=[ggplot2 proto showtext sysfonts]; }; @@ -8718,7 +8752,7 @@ in with self; { epitools = derive2 { name="epitools"; version="0.5-10.1"; sha256="0jqn3pas4lsans50jwakmvpyc7m7x0kxq6dzyckd3vgww56qa65l"; depends=[]; }; epitrix = derive2 { name="epitrix"; version="0.2.2"; sha256="1rqpvdky002h6mz636b77l4kd0im16pww62l6vnwh83si1m9pkki"; depends=[distcrete sodium stringi]; }; epitweetr = derive2 { name="epitweetr"; version="0.1.28"; sha256="0iqdn1vc3h3ng10vhljnr8bs5sn0mnfwpv11zq1dvw6yyh9b5ia6"; depends=[bit64 dplyr DT emayili ggplot2 httpuv httr jsonlite keyring magrittr plotly plyr readxl rgdal rgeos rmarkdown rnaturalearthdata rtweet shiny sp stringr tidytext tidyverse tokenizers xml2 xtable]; }; - eplusr = derive2 { name="eplusr"; version="0.14.2"; sha256="01i0q1fircpshilf0fw4c31lg94wjrsgxadkbc09bp2s4s7l9xzq"; depends=[callr checkmate cli crayon data_table hms lubridate processx progress R6 RSQLite stringi units]; }; + eplusr = derive2 { name="eplusr"; version="0.15.0"; sha256="09j90bcc45f19pfcs44gqp42f0142hhxy3vzdmkbf1w2q8h7d77z"; depends=[callr checkmate cli crayon data_table hms lubridate processx progress R6 RSQLite stringi units]; }; eply = derive2 { name="eply"; version="0.1.2"; sha256="0al44pvqf6ls3dh129vlv3g56hk1nbql09rj0qsb04d9kaz9anrp"; depends=[magrittr]; }; epoc = derive2 { name="epoc"; version="0.2.6-1.1"; sha256="1qlj4cl7mh5k52v2ippfs3cish5iadnix5w46p25hjqiriksclna"; depends=[elasticnet irr lassoshooting Matrix survival]; }; epocakir = derive2 { name="epocakir"; version="0.9.7"; sha256="1i3hiyk8337cpfir25j9afjq6kjy4p2s407nv66kzxp9945fjc8i"; depends=[dplyr ellipsis lubridate magrittr rlang tibble tidyr tidyselect units vctrs]; }; @@ -8775,7 +8809,7 @@ in with self; { esback = derive2 { name="esback"; version="0.3.0"; sha256="09k895028hqa62m8fhbg5b33ry0in6kbrw0lnphn0rgjhlifxp4z"; depends=[esreg]; }; esc = derive2 { name="esc"; version="0.5.1"; sha256="0gns7gz55p6pha05413r3hlvd7f2v1amxkg13d197mab1ypqic7q"; depends=[]; }; escalation = derive2 { name="escalation"; version="0.1.4"; sha256="1iyjp20rzz3lrgn183jvjcf7vvmk66f3rgyv22s2ja4b98598ha4"; depends=[binom BOIN dfcrm DiagrammeR dplyr gtools magrittr purrr RColorBrewer stringr tibble tidyr tidyselect trialr viridis]; }; - eseis = derive2 { name="eseis"; version="0.5.0"; sha256="03pjcms3aj7sm2wrld64v1dw53bqn9pmsayndma03abjh66rblii"; depends=[caTools fftw IRISSeismic matrixStats multitaper raster Rcpp reticulate rgdal rmarkdown shiny signal sp XML]; }; + eseis = derive2 { name="eseis"; version="0.6.0"; sha256="13sr7drqw8gzrhgz1anvnxpypr8m85sb2s8zhi074z4yhqxh9jw6"; depends=[caTools EMMAgeo extraDistr fftw IRISSeismic limSolve matrixStats minpack_lm multitaper raster Rcpp reticulate rgdal rmarkdown shiny shinyFiles signal sp XML]; }; esemifar = derive2 { name="esemifar"; version="1.0.1"; sha256="1fj6hdz4kvign9whxclgriafqc8m1yibvwqprvyn861v31kmlc55"; depends=[fracdiff smoots]; }; eshrink = derive2 { name="eshrink"; version="0.1.2"; sha256="0min4j1dyd08i0fyn9a4iasjlhq08bn74bjz8vj1gq9l114v795k"; depends=[glmnet MASS]; }; esmisc = derive2 { name="esmisc"; version="0.0.3"; sha256="1d6xrdxwn85c8s60s7vzaymh7wa9f7fzd79hq5spzd12fr3zisvj"; depends=[ggplot2 raster readr]; }; @@ -8794,7 +8828,7 @@ in with self; { estmeansd = derive2 { name="estmeansd"; version="0.2.1"; sha256="053mf9yq095dvlz2cj5haav6yabvgj78qpp411xd9nr1ac17jxz9"; depends=[metaBLUE]; }; estout = derive2 { name="estout"; version="1.2"; sha256="0whrwlh4kzyip45s4zifj64mgsbnrllpvphs6i5csb7hi3mdb3i5"; depends=[]; }; estprod = derive2 { name="estprod"; version="1.2"; sha256="0pnpg8w6i1dmkcn6afj2jsm5mzvbxka80np1bldcxgmylrp5s35p"; depends=[boot Formula gmm lazyeval minpack_lm]; }; - estudy2 = derive2 { name="estudy2"; version="0.9.3"; sha256="0wfzcx00f2378aza2wsg1s5klzc3q2sf1fpdrz6njdix29g7g45m"; depends=[matrixStats quantmod Rcpp zoo]; }; + estudy2 = derive2 { name="estudy2"; version="0.10.0"; sha256="0axlhniir8sz06mn18y49q8np3rbx3jfnz410agfajqhq7b5m9s1"; depends=[curl matrixStats quantmod Rcpp zoo]; }; esvis = derive2 { name="esvis"; version="0.3.1"; sha256="0bb91khnrn8v3d6hbbin72032w7w8p0jchbr0bzwyfq5f6l4hwka"; depends=[dplyr ggplot2 Hmisc magrittr purrr rlang sfsmisc tibble tidyr]; }; etable = derive2 { name="etable"; version="1.3.1"; sha256="17dga1hz29jjdclhhwn1hrvlkdfbcbqmk233vc00s59pbmgsav06"; depends=[Hmisc]; }; etasFLP = derive2 { name="etasFLP"; version="2.2.0"; sha256="1030l3g6hghgcmji934g5pc01p2hld09mv3zna58xzzb4wsmz167"; depends=[fields mapdata maps]; }; @@ -8861,12 +8895,13 @@ in with self; { excelstrippr = derive2 { name="excelstrippr"; version="0.1.2"; sha256="1ly76qja9b5l3xwfhigm1apd114y2iq5wdl27sd2h1y80n8xxf2v"; depends=[dplyr readxl tidyr]; }; excerptr = derive2 { name="excerptr"; version="2.0.1"; sha256="0lmcxlpxvldxwqxrprqq39hk5f770ii1x38jm2jbs4n75smp4m21"; depends=[checkmate reticulate]; }; excessmort = derive2 { name="excessmort"; version="0.6.1"; sha256="0qkj30csq96qg7r8vdl79n31dhz69vh49qz4gpb3r2fr32pn497k"; depends=[dplyr ggplot2 lubridate rlang scales tidyr]; }; + excluder = derive2 { name="excluder"; version="0.3.2"; sha256="0rpvhxnza5pcg3499v7mq7lbxdllx26s3ygyvwglphibz0m2q5xx"; depends=[cli curl dplyr iptools janitor lubridate magrittr maps rlang stringr tidyr tidyselect]; }; excursions = derive2 { name="excursions"; version="2.5.2"; sha256="1a0vywxhh0bxjcf8v5gdk1n6cjxrby7750a7qdwhzsgxna3l3gga"; depends=[Matrix sp withr]; }; exdex = derive2 { name="exdex"; version="1.0.1"; sha256="15wdi24fq8q4ja4527k1adv6lkzyhylp8nwlsrb91q0sbmmprrqs"; depends=[chandwich Rcpp RcppArmadillo RcppRoll]; }; exdqlm = derive2 { name="exdqlm"; version="0.1.2"; sha256="0wkiihdvgf7lyzv02l10spxcn127w1jblz6fbr7yf16mfq0m9mlk"; depends=[brms coda crch dlm FNN GeneralizedHyperbolic HyperbolicDist LaplacesDemon magic tictoc truncnorm]; }; exif = derive2 { name="exif"; version="0.1.0"; sha256="12phqn5x1x0xs2xczl3064q983dalm261vqpyafhdcndm1y3gwbc"; depends=[Rcpp]; }; exifr = derive2 { name="exifr"; version="0.3.2"; sha256="0iqm513h7951q3hg8maf2hbprqmsm93cb3mbg3g91qawpx77494c"; depends=[curl jsonlite plyr rappdirs tibble]; }; - exiftoolr = derive2 { name="exiftoolr"; version="0.1.6"; sha256="1vqmihsfz831q8m5w7v5pc5mbcy3v03jg36k0rg02lvh7phpk63y"; depends=[curl data_table jsonlite zip]; }; + exiftoolr = derive2 { name="exiftoolr"; version="0.1.7"; sha256="0q6b4f9z81jxky5ij445gxdh7mkk9aajr4aam6p27hdh3l9428j7"; depends=[curl data_table jsonlite zip]; }; exoplanets = derive2 { name="exoplanets"; version="0.2.2"; sha256="0jzqzw0sn2cixxl6wdikz6cmm2qijxcjp81c98dfqamjcnbpqc1f"; depends=[cli httr memoise readr tibble]; }; exp2flux = derive2 { name="exp2flux"; version="0.1"; sha256="1b3ychb4wcf6dbccx2ddms5xygdgc296cnw4474fm81yrfjznplv"; depends=[gage igraph sybil]; }; expDB = derive2 { name="expDB"; version="0.1.0"; sha256="0h7f9127vrd45lg7k0bkgq3cghxwv2z11p4pak20pakk13g82hj4"; depends=[DBI dplyr lubridate magrittr png readxl reshape2 rlang RSQLite stringr tibble tidyr tidyverse weaana]; }; @@ -8907,7 +8942,7 @@ in with self; { extraoperators = derive2 { name="extraoperators"; version="0.1.1"; sha256="1clyp97ssmdq9ggbv3w5yskx7khnlm4ji7ym3k3b4bx1pazcw4q4"; depends=[]; }; extras = derive2 { name="extras"; version="0.2.0"; sha256="08nlragdwl16ziykn0ygq78h6j8s2idzmhx2w3prrndkbbd4gqbp"; depends=[chk lifecycle]; }; extraterrestrial = derive2 { name="extraterrestrial"; version="0.1.0"; sha256="0clss1zwgw1497n2xif82kplr1w1ajs4xs02041ads3l8craj7y1"; depends=[]; }; - extremeIndex = derive2 { name="extremeIndex"; version="0.0.2"; sha256="1zdw6ik2jh1fir01ay3ynw1l756ba05d5vqqcphnawvg0jkvhxvk"; depends=[boot evd evir gmm goftest]; }; + extremeIndex = derive2 { name="extremeIndex"; version="0.0.3"; sha256="19zkqabk7n5v4nnwlkxbrym4rf1ljbpblggiqd9s9f6ylir417pv"; depends=[boot evd evir gmm]; }; extremeStat = derive2 { name="extremeStat"; version="1.4.0"; sha256="0fvkvlm47ri05w9h5qa937ijsc5lg51jc825wq9pmn7aiv58yxzm"; depends=[berryFunctions evd evir extRemes fExtremes ismev lmomco pbapply RColorBrewer Renext]; }; extremefit = derive2 { name="extremefit"; version="1.0.2"; sha256="07gx6dp0kz4y1jn90hsfvkhn6k7i4flh7ghdz9v5nwda86f55q2s"; depends=[]; }; extremevalues = derive2 { name="extremevalues"; version="2.3.3"; sha256="0ijha5zzmv3qr0czm4qxk28kg3ql5jh3nk9fr0flzl8d9n3z0jx6"; depends=[gWidgets2 gWidgets2tcltk]; }; @@ -8961,9 +8996,11 @@ in with self; { fUnitRoots = derive2 { name="fUnitRoots"; version="3042.79"; sha256="1hsv47dm0hx3s04g9h0bjdgi79zbfihnfxxdc2jskqp94yl7azsy"; depends=[fBasics timeDate timeSeries urca]; }; fabCI = derive2 { name="fabCI"; version="0.2"; sha256="1vga322xpqzsh40n74v8vqiq8zbzrabvg58mp50bcx2ml0dikgnm"; depends=[MASS]; }; fabMix = derive2 { name="fabMix"; version="5.0"; sha256="1gii3mdii9nw423xxn9mhv1pjbw967wdarn828w04zm9dkdcwm48"; depends=[coda corrplot doParallel foreach ggplot2 label_switching MASS mclust mvtnorm RColorBrewer Rcpp RcppArmadillo]; }; + fabisearch = derive2 { name="fabisearch"; version="0.0.3.9"; sha256="0nzv2wkv1l4r2pqq6j2y16lj61djp6bjydsk4xvxlhdnifx5cmhm"; depends=[doParallel doRNG foreach NMF pkgmaker reshape2 rgl]; }; fable = derive2 { name="fable"; version="0.3.1"; sha256="185l3gd83nys11k389ha2ssdm9rkw9aackmz2cd2mvlym72rsnq7"; depends=[distributional dplyr fabletools Rcpp rlang tibble tidyr tsibble]; }; + fable_ata = derive2 { name="fable.ata"; version="0.0.2"; sha256="0rpchiw4rkrk9c0r0n6xqcgqizjpl4xdm0z4v6dzm7abvbndanzr"; depends=[ATAforecasting distributional dplyr fabletools rlang tibble tsbox tsibble]; }; fable_prophet = derive2 { name="fable.prophet"; version="0.1.0"; sha256="12y2k05plg6d6lgqk6617q6z5m6xz33zdsjh56k86h230qqw68rp"; depends=[distributional dplyr fabletools lubridate prophet Rcpp rlang tsibble]; }; - fabletools = derive2 { name="fabletools"; version="0.3.1"; sha256="0r2ik8p89w8r76v9iliqng2ysf9cqqdcmq89ilr8ccilfq3pgbks"; depends=[distributional dplyr generics ggplot2 lifecycle progressr R6 rlang tibble tidyr tidyselect tsibble vctrs]; }; + fabletools = derive2 { name="fabletools"; version="0.3.2"; sha256="1appg3pzw6b08nxh0p1ldbvv1j091v0kcygm808nf04v9axp5f95"; depends=[distributional dplyr generics ggplot2 lifecycle progressr R6 rlang tibble tidyr tidyselect tsibble vctrs]; }; fabricatr = derive2 { name="fabricatr"; version="0.14.0"; sha256="1smy9c34y47xdfmkgm90xyxagnj9qsgxg70mf75z1006m4npbdg8"; depends=[rlang]; }; fabricerin = derive2 { name="fabricerin"; version="0.1.2"; sha256="0ynvnxzxx1iybyy5pvwfsj5y9jjixyrpji9vcl5fq5mjnpg8mpqk"; depends=[glue htmltools]; }; face = derive2 { name="face"; version="0.1-6"; sha256="0lvagpn6sa22zj4phz1vi1ccd8xasrgcq6ypwj7qx4bf1xjc95b1"; depends=[Matrix matrixcalc mgcv]; }; @@ -8979,7 +9016,7 @@ in with self; { factorial2x2 = derive2 { name="factorial2x2"; version="0.2.0"; sha256="045887hwknwm92wlrp0jlvxj5aal50vpnc7ddbh7c8smawmrdwfd"; depends=[mvtnorm survival]; }; factormodel = derive2 { name="factormodel"; version="1.0"; sha256="0yvp8mk42hi1vhrw29djabndc8pbbpjbr6bwss95wsmk7zvvf6i2"; depends=[dplyr gtools nnet pracma]; }; factorplot = derive2 { name="factorplot"; version="1.1-2"; sha256="025lfk122w66yxym3njcpzwnbhg40xi7p1c9vnxczcb8kz31745s"; depends=[multcomp nnet]; }; - factorstochvol = derive2 { name="factorstochvol"; version="0.10.2"; sha256="155vnlsncykazg5ll1sdsk6y3342qvyhfxw7mxnhgc134ngqcn8m"; depends=[corrplot GIGrvg Rcpp RcppArmadillo stochvol]; }; + factorstochvol = derive2 { name="factorstochvol"; version="1.0.0"; sha256="1ksqvfbpkri2zaw60i1c3cwvp88ab379qwkq8d7c0n5mkzk989m8"; depends=[corrplot GIGrvg Rcpp RcppArmadillo stochvol]; }; factory = derive2 { name="factory"; version="0.1.0"; sha256="1715bx2rn8kk5qd196jnrv5f95l54n4y0aqqdzfkgrmqihcy8ahx"; depends=[purrr rlang]; }; factset_analyticsapi_engines = derive2 { name="factset.analyticsapi.engines"; version="3.0.1"; sha256="0v96z837dii1q7mbpd48zwpl2qjzqnhignb80g0xkc4iygsnrrms"; depends=[caTools httr jsonlite R6 rlang]; }; factualR = derive2 { name="factualR"; version="0.5"; sha256="1wz8ibcmilcx62yy29nd2i1pdmjf7fm0g9i5s58gdn8cjlhnw1jl"; depends=[RCurl RJSONIO]; }; @@ -9016,6 +9053,7 @@ in with self; { fasjem = derive2 { name="fasjem"; version="1.1.2"; sha256="1bbrcyyg96hakgla3604byrkn9034197vy2is048kdq20yr2y11n"; depends=[igraph]; }; fasstr = derive2 { name="fasstr"; version="0.3.3"; sha256="0x641cxhjawf4jrf465hnf0zkk120wcsrsd7r1n175x9jsq0z3q2"; depends=[dplyr e1071 fitdistrplus ggplot2 openxlsx PearsonDS plyr purrr RcppRoll scales tidyhydat tidyr zyp]; }; fastAdaboost = derive2 { name="fastAdaboost"; version="1.0.0"; sha256="1pv1y6znvc37pgwk99v4r0hljhipq8v6r3r5cb5vhgyl0bfi8g38"; depends=[Rcpp rpart]; }; + fastCorrDiff = derive2 { name="fastCorrDiff"; version="0.5"; sha256="0fis04xfarvmhpdkh7524ffga8f8svpcn3837rqwy0g039dcfa64"; depends=[irlba Matrix plyr RSpectra]; }; fastDummies = derive2 { name="fastDummies"; version="1.6.3"; sha256="1pw1bpp69sbs8yc1s5ffz11q249ljfwbgfrq6irg5pyp37z38fdx"; depends=[data_table stringr tibble]; }; fastGHQuad = derive2 { name="fastGHQuad"; version="1.0"; sha256="1rjia8wggadr9xwxcmzmal0rc4g6pa3dr5888fbbnb6abl8b2lrj"; depends=[Rcpp]; }; fastGraph = derive2 { name="fastGraph"; version="2.1"; sha256="0lz199607hqpwxzhff4jzhmjq6cbakd335iyclmlscllgfzgnhql"; depends=[]; }; @@ -9058,7 +9096,6 @@ in with self; { fastqcr = derive2 { name="fastqcr"; version="0.1.2"; sha256="12x3lkg5zc4ckyg4x3xxqb779yhrr0fys7asf5b8shz49f86fmm9"; depends=[dplyr ggplot2 gridExtra magrittr readr rmarkdown rvest scales tibble tidyr xml2]; }; fastqq = derive2 { name="fastqq"; version="0.1.2"; sha256="1p5xjwcwsgxyva6y6g9d0m6pvdwih97rassw6n2a85dsl8c4kmfk"; depends=[Rcpp]; }; fastrmodels = derive2 { name="fastrmodels"; version="1.0.2"; sha256="1333546nk429l6s4icbmx8hmh29wsc252wbmmhsmgb116l4ra9zi"; depends=[xgboost]; }; - fastshap = derive2 { name="fastshap"; version="0.0.5"; sha256="08f25ib5mry6h8lvj0g3clc9kfl5g2wdd8x8bw455wwmbcm6x5vg"; depends=[abind ggplot2 gridExtra matrixStats plyr Rcpp RcppArmadillo tibble]; }; fasttime = derive2 { name="fasttime"; version="1.0-2"; sha256="11i4c0zrkvvqsax0az1fvmc0jxfsjyx28434k1qgzhj9g2j9m9cf"; depends=[]; }; fastverse = derive2 { name="fastverse"; version="0.2.1"; sha256="0ys75qw5ag7mynwk4xyjb8jlsgbffqjxn2h1dznxzhsa953v39xk"; depends=[collapse data_table fst kit magrittr matrixStats]; }; fat2Lpoly = derive2 { name="fat2Lpoly"; version="1.2.4"; sha256="01a9d6b2f6g858vg64kr0w0qmv2jqhk9kk3hb6jdr2rly4j8p14x"; depends=[kinship2 multgee]; }; @@ -9084,7 +9121,7 @@ in with self; { fctbases = derive2 { name="fctbases"; version="1.1.0"; sha256="1jf6ngdph45l105cib13lghan7d68hsjqdr8wsjz2kls8il6kz9s"; depends=[Rcpp RcppArmadillo]; }; fcuk = derive2 { name="fcuk"; version="0.1.21"; sha256="1sb7p1m5qb88028mrw95lhh8l7dxj696hjh88nfsdpnscryknfpv"; depends=[magrittr purrr stringdist tibble]; }; fdANOVA = derive2 { name="fdANOVA"; version="0.1.2"; sha256="1pycq5a4czqzi8wcfmlc9ncg827j7n0qxyj90wcv39nbcrnl3da1"; depends=[doBy doParallel fda foreach ggplot2 magic MASS]; }; - fda = derive2 { name="fda"; version="5.5.0"; sha256="0nf7481hc04yxw93d01m0g8vpb50fc3yb38y44cb0yf8mcflgky2"; depends=[deSolve fds Matrix]; }; + fda = derive2 { name="fda"; version="5.5.1"; sha256="0fm2vswc8fdi2p1axby0hjwh8m6lc1zrdikrpiamilr6w9m2zanw"; depends=[deSolve fds Matrix]; }; fda_usc = derive2 { name="fda.usc"; version="2.0.2"; sha256="0z44vkzjm2h6r5af0k1iic1szvw82rbwjrm541zlwn2jycj4q96a"; depends=[doParallel fda foreach iterators MASS mgcv nlme]; }; fdaACF = derive2 { name="fdaACF"; version="1.0.0"; sha256="0qrsj25p6h2xg25v0ayk8x31d4whyy0mpf2xdpw3hcwhb71mbfhn"; depends=[CompQuadForm fda pracma vars]; }; fdaMixed = derive2 { name="fdaMixed"; version="0.6"; sha256="0hyhb67qvvhyq68k5h4ffvsl4lmw66nfy5l14kwxnn42h3b810sc"; depends=[Formula Rcpp RcppArmadillo]; }; @@ -9094,7 +9131,7 @@ in with self; { fdadensity = derive2 { name="fdadensity"; version="0.1.2"; sha256="1i2xzchlsixgjzyfmbv547sy6mq90xrnyc2kpd11wwfgfrpj1ix3"; depends=[fdapace Rcpp]; }; fdakma = derive2 { name="fdakma"; version="1.2.1"; sha256="0j9qgblrl7v4586dd6v0hjicli6jh8pkk5lzn8afpl75xfs24six"; depends=[]; }; fdaoutlier = derive2 { name="fdaoutlier"; version="0.2.0"; sha256="1jpd9mszd0grn7rwi3dmgl6l5dggwsnz1kyljz2gcfm2wck2zhbz"; depends=[MASS]; }; - fdapace = derive2 { name="fdapace"; version="0.5.7"; sha256="0mmdfp27a7j0hvziir8b2dybifrkahhcinnqf84xa8pp24w0v7mv"; depends=[Hmisc MASS Matrix numDeriv pracma Rcpp RcppEigen]; }; + fdapace = derive2 { name="fdapace"; version="0.5.8"; sha256="15pslr1nysmraqd1swi3diljc9cl62z4x8nib2v5fqf3a3xz66sn"; depends=[Hmisc MASS Matrix numDeriv pracma Rcpp RcppEigen]; }; fdapaceShiny = derive2 { name="fdapaceShiny"; version="1.0.5"; sha256="1cy1rcmsyr78q3wqkaw3lvqzlr07n7djrqqpwm3y8xz60fybs8p6"; depends=[bs4Dash config dplyr DT fdapace ggplot2 golem htmltools magrittr plotly purrr reshape2 shiny shinyjs shinyWidgets stringr tidyr]; }; fdasrvf = derive2 { name="fdasrvf"; version="1.9.7"; sha256="06kq9rlszydr55sg17yybwa89qd4d1826jyw4kmx4aligx7ycqq6"; depends=[coda doParallel fields foreach lpSolve Matrix matrixcalc mvtnorm Rcpp RcppArmadillo testthat tolerance viridisLite]; }; fdatest = derive2 { name="fdatest"; version="2.1"; sha256="0zdnmssir5jz2kbfz4f4xshjfv4pivqx7cbh2arlx6ypkjrjws8n"; depends=[fda]; }; @@ -9121,7 +9158,7 @@ in with self; { fec16 = derive2 { name="fec16"; version="0.1.3"; sha256="0azvrg98li535mqa2awhmfisfyfr4d8dw0ynikxmp0z1w9l3dx1p"; depends=[dplyr readr vroom]; }; fechner = derive2 { name="fechner"; version="1.0-3"; sha256="0bassigcipwlr2g8cdjh8jyhmb903k3hla9gnigcbz7qwzlfwa86"; depends=[]; }; federalregister = derive2 { name="federalregister"; version="0.2.0"; sha256="0qr8nd3ylnwcv1wxspw5i7ray5sh30zr648spg0lpqq8dp2b8p7b"; depends=[curl httr jsonlite]; }; - fedmatch = derive2 { name="fedmatch"; version="2.0.4"; sha256="0vc9ax9nh2wy3m1l7m2fhmp75kx7bf0i2g3zg5svz3579ygihar4"; depends=[BH data_table forcats magrittr purrr Rcpp scales SnowballC stringdist stringr]; }; + fedmatch = derive2 { name="fedmatch"; version="2.0.5"; sha256="1k6gj0aaihxqwvvvic8s5bhjqlxg6m37yj3bk9hbxy1lijv89w8j"; depends=[BH data_table forcats magrittr purrr Rcpp scales SnowballC stringdist stringr]; }; fedregs = derive2 { name="fedregs"; version="1.0.0"; sha256="171j6r6qxnx9gk9x9gpdyh51ssrgmf7sczc4889qr3qqw15sm4bn"; depends=[dplyr httr magrittr purrr rvest stringi tidyr tidytext xml2]; }; fedstatAPIr = derive2 { name="fedstatAPIr"; version="0.1"; sha256="0ll86fp9kaddacsy9jfnwrq353kx4gny8vmxg8vnfx9kcl3bv95z"; depends=[dplyr httr jsonlite magrittr readsdmx rlang rsdmx rvest stringr xml2]; }; feisr = derive2 { name="feisr"; version="1.2.0"; sha256="012rspsw1xwl11gdr3nlpdmf24y9d2shwj81iqj1xill3l0mchwc"; depends=[aod dplyr Formula plm Rdpack]; }; @@ -9133,7 +9170,7 @@ in with self; { ferrn = derive2 { name="ferrn"; version="0.0.1"; sha256="1zp18hfnvmdb2w0qj432yj9a3939lad2hqymrmj8y1w3k0razifk"; depends=[dplyr geozoo gganimate ggforce ggplot2 ggrepel magrittr purrr rlang scales stringr tibble tidyr tourr]; }; ff = derive2 { name="ff"; version="4.0.5"; sha256="0dsh6llfdz04w94xr3yl2b4vkk9g3rwhvfnxcd025v2424krxfls"; depends=[bit]; }; ffbase = derive2 { name="ffbase"; version="0.13.3"; sha256="1dp6lblfq2j7r1b4b8ls47jlx8j27n88d5vp8w116lb8pa01zxmk"; depends=[bit fastmatch ff]; }; - fflr = derive2 { name="fflr"; version="2.0.0"; sha256="18bn1k2g3fdyhv1cqdxg5j8xqji3xwv6hw84xnisv33994yw4h87"; depends=[httr jsonlite tibble]; }; + fflr = derive2 { name="fflr"; version="2.0.1"; sha256="0yc3xr97iprnr4snsm3vf4bimx56vxw6dpkdqxv20qs5jd9bshcw"; depends=[httr jsonlite tibble]; }; ffmanova = derive2 { name="ffmanova"; version="1.1.0"; sha256="0019m9vxnh5yxr5k7zflzyhd533a842cjjkcpqyannshnrbfndvy"; depends=[]; }; ffmetadata = derive2 { name="ffmetadata"; version="1.0.0"; sha256="0gjv5fl3p0kz28c91l4qf34a2685a24l5841ixdg7wivfs5v9npv"; depends=[httr jsonlite]; }; ffp = derive2 { name="ffp"; version="0.1.0"; sha256="11c25lcy5fzchc00cv7r9g92gnb6iffmcylibs1w42245r69bsnh"; depends=[assertthat dplyr forcats ggdist ggplot2 lubridate magrittr mvtnorm NlcOptim pracma purrr rlang scales tibble tidyr usethis vctrs xts]; }; @@ -9158,12 +9195,13 @@ in with self; { fiberLD = derive2 { name="fiberLD"; version="0.1-6"; sha256="1i3bl2qsc77m81l11an9ihl4vy86s8jd5x6pasib77rl2877ad4x"; depends=[doParallel foreach Matrix VGAM]; }; fic = derive2 { name="fic"; version="1.0.0"; sha256="18xz94w1ab17jfi61bdg9z3pm63g488v17ns2ivizkza4gg07pv8"; depends=[abind ggplot2 mvtnorm numDeriv scales survival tensor]; }; fidap = derive2 { name="fidap"; version="0.0.3"; sha256="0zq07395qx59xxb3cj5axhpkwnad2h88qbm3aan43q5cip9wi2bx"; depends=[httr jsonlite]; }; + fidelius = derive2 { name="fidelius"; version="0.0.2"; sha256="18dsw069j3jzl0splgjjdsybny1hq0dmiyygri8nlfwshijkw15h"; depends=[askpass fs htmltools readr rlang rmarkdown rstudioapi sodium whisker]; }; fieldRS = derive2 { name="fieldRS"; version="0.2.3"; sha256="0jr2l5cnrawd6wibmb6r0sngd851z9mbz4mwprnbbqbv3hzzrpm9"; depends=[caret concaveman geosphere ggplot2 raster rgeos sp stringdist vegan]; }; fields = derive2 { name="fields"; version="13.3"; sha256="1hs4k5a9hh0r5fsrnpnvs6wvf78xpjzj8a2j6643dsz73a5q6ln6"; depends=[maps spam viridis]; }; fiery = derive2 { name="fiery"; version="1.1.3"; sha256="1rwnmm4n59wdsvb57bj8mx1qhz93jbvfb73sl111nwqazphrhid1"; depends=[assertthat crayon future glue httpuv later R6 reqres stringi uuid]; }; figpatch = derive2 { name="figpatch"; version="0.1.0.1"; sha256="1chshlyc3ygyvgzyph4mix3a6kvv4w0vbnss58472h0mgl7mgx8v"; depends=[ggplot2 magick patchwork]; }; - file2meco = derive2 { name="file2meco"; version="0.1.0"; sha256="1lw3w8l2563ccvb4v0hj8qk96yam5p3rf0hcah6s93pyrz1mimyx"; depends=[ape dplyr magrittr Matrix microeco R6 rhdf5 tidyr yaml]; }; - filearray = derive2 { name="filearray"; version="0.1.1"; sha256="05zxi3w91x2hyyr1a492djj6k0s111kqqxd19nmqp4vkm2cz2cyw"; depends=[BH Rcpp]; }; + file2meco = derive2 { name="file2meco"; version="0.2.0"; sha256="0x45nr344k3nmcrjrlm2fczcxrh5n807v7qymffkkq7v589nfcyl"; depends=[ape dplyr magrittr Matrix microeco R6 rhdf5 tidyr yaml]; }; + filearray = derive2 { name="filearray"; version="0.1.2"; sha256="1fs19jpnnkb40rv2z9fxvj7snvmd41nhb8z61a4f2jslkrw9cs23"; depends=[BH Rcpp]; }; filehash = derive2 { name="filehash"; version="2.4-2"; sha256="14zv7h5195dmfksgk8qvjgc2qq8253vga6267aa1bqs5bpvmdl5n"; depends=[]; }; filehashSQLite = derive2 { name="filehashSQLite"; version="0.2-4"; sha256="1higvkmj4wvnwpvayqinzaygiksij20d77dx118q0gffsczadamh"; depends=[DBI filehash RSQLite]; }; filelock = derive2 { name="filelock"; version="1.0.2"; sha256="00ql5fw1hidpfnm0szaavf43ahmsnvdbi8i5lr1nrcc90yaiaadc"; depends=[]; }; @@ -9173,6 +9211,7 @@ in with self; { filesstrings = derive2 { name="filesstrings"; version="3.2.2"; sha256="111cjb2wja6q864wki8czpwm6xj8c3zwjlqcr8r36993ww72k6iy"; depends=[checkmate magrittr purrr rlang strex stringi stringr withr]; }; filling = derive2 { name="filling"; version="0.2.3"; sha256="17vk0pndsc8xhgp4zy5dfyc36pzk2hm5zk6xijdy4xaf7k5j4wls"; depends=[CVXR nabor Rcpp RcppArmadillo Rdpack ROptSpace RSpectra]; }; fillr = derive2 { name="fillr"; version="1.0.0"; sha256="1gx1ihp8j90ywmm6mmmfq4jd6apxawk9s5dfw3jq0wm1c290zqpv"; depends=[]; }; + filterNHP = derive2 { name="filterNHP"; version="0.1.2"; sha256="0kk6548nr5786ywa83v8by4c1n7ljh9sy4fshpfqizp49fv9zv22"; depends=[data_tree rclipboard shiny shinyBS shinyjs shinyWidgets]; }; finalfit = derive2 { name="finalfit"; version="1.0.3"; sha256="07pniw0w9s0czxk82pw1a7j6br52fvq3yxrx2n61yyqs5cd89ymv"; depends=[bdsmatrix boot broom dplyr forcats GGally ggplot2 gridExtra lme4 magrittr mice pillar pROC purrr scales stringr survival tidyr]; }; finbif = derive2 { name="finbif"; version="0.6.2"; sha256="1y4srrybiin16xgq1a2y80a84yq5nad4iv1a3xpcniixgk79k6l8"; depends=[digest httr jsonlite lubridate lutz]; }; finch = derive2 { name="finch"; version="0.4.0"; sha256="0q7riaxms460c6z2gb8i0q4pb348bnvry46bjd7pb9mh8fnl1i8b"; depends=[data_table digest EML hoardr xml2]; }; @@ -9186,7 +9225,7 @@ in with self; { fingerprint = derive2 { name="fingerprint"; version="3.5.7"; sha256="04jcwkydjrs31pia6kq8z2n9s54im950q08hs2ay15xjxxkmb8ic"; depends=[]; }; finiteruinprob = derive2 { name="finiteruinprob"; version="0.6"; sha256="0z4l0crymh58chxniqq70fqmvi6f5jkgvz72vbc7s3l9lrrapgr3"; depends=[numDeriv sdprisk]; }; finity = derive2 { name="finity"; version="0.1.4.1"; sha256="0xs3vx0vj165hj4dq8ivrdf6fcvj23zhp2ai79rgpyb5rr5ndkvc"; depends=[BH Rcpp RcppArmadillo stabledist]; }; - finreportr = derive2 { name="finreportr"; version="1.0.2"; sha256="0xkkrgmwkasxgaf3lvvxl5azwbphk83fpa2asgva86qml7vwznlc"; depends=[curl dplyr httr rvest XBRL xml2]; }; + finreportr = derive2 { name="finreportr"; version="1.0.3"; sha256="1xa94x69czy9cn9r6hklv6b91514aqvcam29pcrb0w6gypwlm1pw"; depends=[curl dplyr httr rvest XBRL xml2]; }; fipe = derive2 { name="fipe"; version="0.0.1"; sha256="055jav8h4wws76jahm2d5dj49wkvzchh3f2vk5d50pny4dc7smar"; depends=[dplyr forcats furrr future httr jsonlite lubridate magrittr purrr readr stringr tibble tidyr]; }; fipio = derive2 { name="fipio"; version="1.0.0"; sha256="118gir8gnwip2hzf4q4vv96rkw050qmb0kv3hq2cwlfscbrwza9f"; depends=[]; }; fipp = derive2 { name="fipp"; version="1.0.0"; sha256="0wr3czwsqwa1bpdcjk0r1739vjanxc0fv0vnl3r5lgykrbhw9v3r"; depends=[matrixStats Rcpp RcppArmadillo]; }; @@ -9228,7 +9267,7 @@ in with self; { flagr = derive2 { name="flagr"; version="0.3.2"; sha256="195c78cml2pjzfvpkaxbzcg1dfdqxi76138p0v3x3zzva9d8nlji"; depends=[]; }; flair = derive2 { name="flair"; version="0.0.2"; sha256="0hvg9k7l6vdhmbmql1viyn54f07r31ssyyhdv2v242i0npa2l25r"; depends=[dplyr evaluate ggplot2 glue knitr magrittr purrr rmarkdown stringr]; }; flam = derive2 { name="flam"; version="3.2"; sha256="0v6kcl4n7wq052p7jdgbzlh9fpk8bzlrqw12i6pib1wd3slj0asa"; depends=[MASS Rcpp]; }; - flametree = derive2 { name="flametree"; version="0.1.2"; sha256="0b00wqhqf2cf5flyr4ygdiz2iil74i21gmz4xgs2hci5r7r0smck"; depends=[dplyr ggforce ggplot2 magrittr paletteer purrr tibble tidyr]; }; + flametree = derive2 { name="flametree"; version="0.1.3"; sha256="0mdmr1s4iqpic9rz33b2cja56r6p67dfhz9j2gdx4pdicywairxg"; depends=[dplyr ggforce ggplot2 magrittr purrr tibble tidyr]; }; flamingos = derive2 { name="flamingos"; version="0.1.0"; sha256="0gic6y8wpxffpyi3zy0wh7apy4z6argxbz284n80k2mzh6lh029k"; depends=[Rcpp RcppArmadillo]; }; flan = derive2 { name="flan"; version="0.9"; sha256="0g4prvlwiaf6ig6kghniqpcaxyws27345mb5qmcpgsy4jzdc4k7j"; depends=[Rcpp RcppArmadillo RcppGSL]; }; flare = derive2 { name="flare"; version="1.7.0"; sha256="0f992dmgnr6s8g3386i9bjfyf08q8srgw7sjz2yx7snj8znq7251"; depends=[igraph lattice MASS Matrix]; }; @@ -9247,11 +9286,11 @@ in with self; { flexmet = derive2 { name="flexmet"; version="1.1"; sha256="1xcs4gs5aanvfsf6bgj28jsjdxrx0dz475xsw8hd6y44qdgw1sqb"; depends=[]; }; flexmix = derive2 { name="flexmix"; version="2.3-17"; sha256="0jangf89174p0idh9afbicfiln2sz8jxc3bjc6n0j9036dw9n09n"; depends=[lattice modeltools nnet]; }; flexmixNL = derive2 { name="flexmixNL"; version="0.0.1"; sha256="0bk5v0cnsn1qkd1b86vj0bnpr4l9d6523kpkgzb1l1sqyscawfmm"; depends=[flexmix gnm]; }; - flexpolyline = derive2 { name="flexpolyline"; version="0.2.4"; sha256="11chwaanrd8finvjs8kpmrpqikyidm7nswbal9kf4yh935znr2hl"; depends=[Rcpp sf]; }; + flexpolyline = derive2 { name="flexpolyline"; version="0.2.5"; sha256="1ccv4lfpcikyxa5bpnyh1zijxbayfny8cv3svh5ph5l563rgybzy"; depends=[Rcpp sf]; }; flexrsurv = derive2 { name="flexrsurv"; version="1.4.5"; sha256="1xwh6fj854hr5j1mdh4cbp3hbrbdl4nb2ili876rq08wb9wq5pkf"; depends=[Epi formula_tools matrixcalc orthogonalsplinebasis statmod survival]; }; flexsurv = derive2 { name="flexsurv"; version="2.1"; sha256="0kwij9nkdvnsn1kn12fj3hjkd2qpgw7bdda4qad7basq5p6divlp"; depends=[assertthat deSolve dplyr generics magrittr Matrix mstate muhaz mvtnorm numDeriv purrr quadprog Rcpp rlang rstpm2 survival tibble tidyr tidyselect]; }; flexsurvcure = derive2 { name="flexsurvcure"; version="1.2.0"; sha256="06qppcjml380drd6brc60j1swasqrmdx82h6x69xpb65zn9wpa3c"; depends=[flexsurv gtools survival]; }; - flextable = derive2 { name="flextable"; version="0.6.9"; sha256="15lba98wnci2nsndj86gx3k94q9lfxhp5nr5xlhgcnycyj1c9zjx"; depends=[base64enc data_table gdtools htmltools knitr officer rlang rmarkdown uuid xml2]; }; + flextable = derive2 { name="flextable"; version="0.6.10"; sha256="01nm0357b0z4dgrplbq9ms63j51n0rgvvxyy068zdsc5p7j3lql2"; depends=[base64enc data_table gdtools htmltools knitr officer rlang rmarkdown uuid xml2]; }; flifo = derive2 { name="flifo"; version="0.1.5"; sha256="03x66l3ryrjvwbxxd0ncjrb5w9kc7fswmp5psb1cb7r87f395gm3"; depends=[bazar pryr]; }; flightplanning = derive2 { name="flightplanning"; version="0.8.4"; sha256="1n0mjrqlnfv4fvl512slw3d3vmlcn2lhf89jlfg2s0xfrd9k4pq8"; depends=[rgdal rgeos sp]; }; flightplot = derive2 { name="flightplot"; version="0.1.0"; sha256="1276lsahr9kdsvp1ismm3b5syvhfr7ifizzd79f8w1h2rjblva8x"; depends=[dplyr geosphere ggplot2 ggrepel magrittr rlang sf tibble]; }; @@ -9288,7 +9327,7 @@ in with self; { fmri = derive2 { name="fmri"; version="1.9.6"; sha256="1wh77xwpm8f9d9vky3r7vfmkik3hls008ifk8hkm2rq6i06jj53n"; depends=[aws metafor nlme]; }; fmriqa = derive2 { name="fmriqa"; version="0.3.0"; sha256="1z09nf1c305a78c129jvs21b9z91wyhazz41wrn4bimmhfhx7szv"; depends=[ggplot2 gridExtra imager optparse pracma RcppEigen reshape2 RNifti tidyr viridisLite]; }; fmsb = derive2 { name="fmsb"; version="0.7.1"; sha256="09pq7p7i6vkq9av7l7x9hicl9sqh7xn96f9pac117hy6z852jvi2"; depends=[]; }; - fmtr = derive2 { name="fmtr"; version="1.5.3"; sha256="0gbb1zhzqphg2yh4qsypr9lhsvcr32wilk3pahkzsn2laxdqn1sx"; depends=[crayon Rcpp tibble]; }; + fmtr = derive2 { name="fmtr"; version="1.5.4"; sha256="0xrl22f02q2m66k9h1134iwdmzhvk0ni9dfrgzpi8rnfdf4svx4i"; depends=[crayon Rcpp tibble]; }; focusedMDS = derive2 { name="focusedMDS"; version="1.3.3"; sha256="18s86dbbpyajscqr9frprf2vp1zif7vh4lw5m0cjskfc6gmsdp2p"; depends=[htmlwidgets]; }; foghorn = derive2 { name="foghorn"; version="1.4.2"; sha256="11riav36ncxybx4yrrrwrykg9xmh2fpp5m92zl9prhi7g0rllg6f"; depends=[clisymbols crayon curl httr jsonlite rlang rvest tibble xml2]; }; foieGras = derive2 { name="foieGras"; version="0.7-6"; sha256="0g4c9id7q3jgjcgwmncp4bkw9njwb41cp6ycv7psiidkhmnzi03d"; depends=[assertthat CircStats dplyr furrr future ggplot2 lifecycle lubridate mvtnorm patchwork purrr RcppEigen sf stringr tibble tidyr TMB tmvtnorm trip]; }; @@ -9367,7 +9406,6 @@ in with self; { fracdist = derive2 { name="fracdist"; version="0.1.1"; sha256="0ssg8h1mvkzpwq4dn9fdxjg1vzhcv6606wsy0xrm1wz9p6s5rx74"; depends=[]; }; fracprolif = derive2 { name="fracprolif"; version="1.0.7"; sha256="124p5x59smqf8ba0xwhlq69w77zga2bv9plzwkadf700lzvaj2wx"; depends=[emg numDeriv]; }; fractD = derive2 { name="fractD"; version="0.1.0"; sha256="1cnp8qrc6jpdj0grwkvn5jkdymjfhg5ybbhqvknxirc4g981q8bj"; depends=[imager plyr]; }; - fractalRegression = derive2 { name="fractalRegression"; version="1.0"; sha256="0lkxm3f9xz1c4kc81rfhd521q9jzsdb3ngrgn7nsawllpi2zrgwb"; depends=[Rcpp RcppArmadillo]; }; fractaldim = derive2 { name="fractaldim"; version="0.8-5"; sha256="1hi5xzya528947wfb50brl00m6n6krv4sn5nzga285nncf6xprhh"; depends=[abind]; }; fractional = derive2 { name="fractional"; version="0.1.3"; sha256="1jz83y53s0xdphh1z3v3z7xhcmhx7rp0iiazw2vdsx2747r3rirn"; depends=[Rcpp]; }; fracture = derive2 { name="fracture"; version="0.2.0"; sha256="18dyq1g9b8gpac5xjry9hkmql5fmwyyghkmrrgkrrvy42q8ygn91"; depends=[Rcpp]; }; @@ -9378,15 +9416,15 @@ in with self; { frailtypack = derive2 { name="frailtypack"; version="3.4.0"; sha256="0i46jrgsq01j79ha76j29j26ias1hxjb97rf0cp0yxbc7xnaz6hi"; depends=[boot doBy MASS nlme rootSolve shiny statmod survC1 survival]; }; frair = derive2 { name="frair"; version="0.5.100"; sha256="1j557dqvc5xiz7xbl4h7vp55pc3hly8ci01qy36p02vlxhzf4hj3"; depends=[bbmle boot lamW]; }; frambgrowth = derive2 { name="frambgrowth"; version="0.1.0"; sha256="1xmy1zxp7aa2n8frlxhn1bl41zda1jldvvxb3q41yam3pslc8m1q"; depends=[]; }; - framecleaner = derive2 { name="framecleaner"; version="0.1.0"; sha256="1c7z11s7fhjicd940jwyb32iriy2p5yk7ca28kq1kjzpz9gsb22d"; depends=[bit64 dplyr forcats fs janitor lubridate magrittr printr purrr readr readxl rio rlang rlist rstudioapi stringi stringr tibble tidyr tidyselect vroom]; }; + framecleaner = derive2 { name="framecleaner"; version="0.2.0"; sha256="1lclxjds59i1mhc8mzmgy5f7yhqwv72ylidpfvzjgslf45sjk5lp"; depends=[bit64 dplyr fastDummies forcats fs janitor lubridate magrittr purrr readr rio rlang rlist rstudioapi stringr tibble tidyselect vroom]; }; franc = derive2 { name="franc"; version="1.1.4"; sha256="0l41m53li2pvcac7m5y5gkvmw0qy5k3v0m2ljda9gdaasg5029xr"; depends=[jsonlite]; }; frapplot = derive2 { name="frapplot"; version="0.1.3"; sha256="12924szk2p0582nv97gi8pxrbv41zqpjryc6jqgg4llhp7ydz7xf"; depends=[]; }; frbs = derive2 { name="frbs"; version="3.2-0"; sha256="0biv6j31qi0f4i063ygmbp6v6ws1nxijn5kyhg5sz1rnbr0msl28"; depends=[]; }; frechet = derive2 { name="frechet"; version="0.2.0"; sha256="1006mgy9avwkwy0666maac59xp4j27wq5yy3pwc3h1r05myxw379"; depends=[corrplot fdadensity fdapace Matrix osqp pracma]; }; fredr = derive2 { name="fredr"; version="2.1.0"; sha256="0073qh0drf1p38hc84m54n35hyza90m8zn48ihx3alxkiq1m8ijp"; depends=[httr jsonlite rlang tibble]; }; - freealg = derive2 { name="freealg"; version="1.0-2"; sha256="1k5dr02p313xs1ipk217bqlm8xb6620filcmq582lmykj2zxs774"; depends=[mathjaxr partitions Rcpp]; }; + freealg = derive2 { name="freealg"; version="1.0-3"; sha256="14jr00j2ky5sq8bhbr2i41mqj3jqk204nh6983wxi4qnmpvxhm1f"; depends=[disordR mathjaxr partitions Rcpp]; }; freedom = derive2 { name="freedom"; version="1.0.1"; sha256="1mrdl2cqdm2c68lx7lyixgiqw6xzwnx9c8j5q4annhiz107i9i22"; depends=[]; }; - freegroup = derive2 { name="freegroup"; version="1.1-0"; sha256="0ssshs2d6l2ip1xx9x581w0cdnd2459a1mh360ybwajkjgak2ci6"; depends=[magic magrittr plyr]; }; + freegroup = derive2 { name="freegroup"; version="1.1-3"; sha256="11v0ph0mhk8g9zwapcp2wgr1sbdwdqh7nhbrci87myapypdncqjc"; depends=[magic magrittr plyr]; }; freesurfer = derive2 { name="freesurfer"; version="1.6.8"; sha256="0ks6ms5vp38pykcg66w960nmfgq383iprrbbzw5dlx9xnrx4yhbh"; depends=[neurobase R_utils reshape2]; }; freesurferformats = derive2 { name="freesurferformats"; version="0.1.16"; sha256="0aax9dimig3cn8mqnl8xdj9khs7fga08fx7vw9qkwrv4bnls8zvz"; depends=[pkgfilecache rmarkdown xml2]; }; frenchCurve = derive2 { name="frenchCurve"; version="0.1.0"; sha256="1b8lkmhydz4jq8h5p117fwaygbsillzcfx0p7w0ljj8b8v57r6l9"; depends=[sp]; }; @@ -9402,7 +9440,7 @@ in with self; { frequentistSSD = derive2 { name="frequentistSSD"; version="0.1.0"; sha256="0r2vy8n6d8c2vdijd0cyg9vv4m0w0a6m2piblky48c1wm2qznfd2"; depends=[survival]; }; fresh = derive2 { name="fresh"; version="0.2.0"; sha256="1787mm6w2s5x9scxy7r9cb77rgpmy4ngwkn4z8g3gs48mrab4bd9"; depends=[htmltools rstudioapi sass shiny]; }; friends = derive2 { name="friends"; version="0.1.0"; sha256="164p9g07vq3xs2lgg250yvzca4b0mp81pqbnjfdkzcqh5hmahsan"; depends=[tibble]; }; - fritools = derive2 { name="fritools"; version="2.3.0"; sha256="1xhlgl40rfg0h6kdrcm239p9z6fgb5id57zlhqh3lrsdlm8qjsh1"; depends=[]; }; + fritools = derive2 { name="fritools"; version="2.4.0"; sha256="0pj8816y5gdks95v4mnd1ncii7hiqbsh1g5b1795dq5qhfc1xp8l"; depends=[]; }; frm = derive2 { name="frm"; version="1.2.2"; sha256="1dl0vca9r2dams99sc13pfpi0b3yb02x59f4c1jz07zz005c8l23"; depends=[]; }; frmhet = derive2 { name="frmhet"; version="1.1.3"; sha256="07sgsfhzrci8g1b0gicjfca1mgd8ppfqpkpp4q9bdxnjvdvlf45s"; depends=[]; }; frmpd = derive2 { name="frmpd"; version="1.1.0"; sha256="0irgqdr0vr8k408lsxcrjkjbjvqvmy5mnjw9c1ghs86isrp5mciz"; depends=[]; }; @@ -9418,7 +9456,7 @@ in with self; { fsMTS = derive2 { name="fsMTS"; version="0.1.5"; sha256="1vxj9wkzpbk44hby4fdyhj72748c65by612kpphs6vmgzmw4y471"; depends=[freqdom glasso lars mpmi randomForestSRC]; }; fsbrain = derive2 { name="fsbrain"; version="0.5.2"; sha256="1vqj8x6wsaz89dl58nqhmz9vla0vjzdn8gzppkfggb44i2q1xm55"; depends=[data_table fields freesurferformats magick pkgfilecache reshape rgl squash viridis]; }; fscaret = derive2 { name="fscaret"; version="0.9.4.4"; sha256="18fhyfl3f8syyc3g937qx87dmwbv7dray6b97p1s6lnssiv61gsw"; depends=[caret gsubfn hmeasure]; }; - fsdaR = derive2 { name="fsdaR"; version="0.4-9"; sha256="1iaqqdwhh29fhq4r64adfrjmsyzq4v60bz9111vkazj4kr45wxxv"; depends=[ggplot2 rJava rrcov]; }; + fsdaR = derive2 { name="fsdaR"; version="0.6-5"; sha256="0j6nvlp527b4g36jg6mcq8w2mc8p795q68d11yi41fvlcw7v6vym"; depends=[ggplot2 rJava rrcov]; }; fsia = derive2 { name="fsia"; version="1.1.1"; sha256="0id7cnswrqylgpwjil1zfn89ryrdpl20fim8x1srl8s1hm5bg35r"; depends=[]; }; fslr = derive2 { name="fslr"; version="2.24.1"; sha256="1psjqvjv8krlkj7dcfwygz563a4cpn7h21z330hxh5q10rwhabi8"; depends=[neurobase oro_nifti R_utils]; }; fsn = derive2 { name="fsn"; version="0.1"; sha256="1a5vsrk9l19rh46kxrfmgcv07l0pr4zn1q2f0chivq43pwmfm194"; depends=[Rfast]; }; @@ -9432,7 +9470,7 @@ in with self; { ftDK = derive2 { name="ftDK"; version="1.0"; sha256="1xs2rr2afjza97kpym5zkas3k78pilxjlh7lp1gc66banldr71g2"; depends=[dplyr httr pbapply purrr tibble]; }; ftExtra = derive2 { name="ftExtra"; version="0.2.0"; sha256="1nlwhck6f0llr6yci8y55dzcsdsi2yd758cmf4snjzhqm06kzrby"; depends=[dplyr flextable jsonlite magrittr purrr rlang rmarkdown stringr tibble tidyr tidyselect vctrs xfun yaml]; }; ftnonpar = derive2 { name="ftnonpar"; version="0.1-88"; sha256="0df9zxwjpfc939ccnm1iipwhpf76b34v0x74nsi1mm1g927dfl0i"; depends=[]; }; - ftrCOOL = derive2 { name="ftrCOOL"; version="1.1.2"; sha256="08s1k47hjfgizfxpqlkqdir9pkhalqp3j9w047ll3wzx3jjx0jgn"; depends=[]; }; + ftrCOOL = derive2 { name="ftrCOOL"; version="2.0.0"; sha256="0jy0dhkf7hlrriz32abp0h52fw92i5k8x25bjqlzd0khyv2vhj0i"; depends=[]; }; fts = derive2 { name="fts"; version="0.9.9.2"; sha256="08pwhi19db173d4nsk5rl8xa8qmaddj4bn3cjxb8ql4kny59i57q"; depends=[BH zoo]; }; ftsa = derive2 { name="ftsa"; version="6.1"; sha256="0j8jr0sbvxfzqfy8va7axljp660jkpqwg9djbis9ikf4x9n9f7n9"; depends=[boot colorspace e1071 ecp evgam fda fdapace fGarch forecast glue KernSmooth LaplacesDemon MASS pcaPP pdfCluster psych rainbow ROOPSD sde strucchange vars]; }; ftsspec = derive2 { name="ftsspec"; version="1.0.0"; sha256="12f9yws1r26i240ijq0xqprl3pgbw50wv68jsm75ycplbs2jsyhs"; depends=[sna]; }; @@ -9442,7 +9480,6 @@ in with self; { fugue = derive2 { name="fugue"; version="0.1.7"; sha256="1myvi9cizxvahb6wn2k26v3x958xsrm2p414ar05injmfjdfnsmi"; depends=[]; }; fullROC = derive2 { name="fullROC"; version="0.1.0"; sha256="0pn4lh59snfcyyi28350lm4n9xh6y25hpjr38dc33bic4cfbqiyr"; depends=[]; }; fullfact = derive2 { name="fullfact"; version="1.5"; sha256="1p2f4rf54hd0icy49fkq6p973rqisjjmmr1brwcv0fg22nv2kidg"; depends=[afex lme4]; }; - fulltext = derive2 { name="fulltext"; version="2.0"; sha256="104wkas9azyb2drfaz1hrgbx2ilbb0k2mb8411l10rsbkqva099f"; depends=[aRxiv crul data_table digest fauxpas hoardr jsonlite magrittr microdemic pdftools rcrossref rentrez rplos storr tibble xml2]; }; fun = derive2 { name="fun"; version="0.3"; sha256="09601ma4irmpkgjspq6zmr383m1pbgyfdkf7gw8w8gp0q7ab89aq"; depends=[]; }; funData = derive2 { name="funData"; version="1.3-8"; sha256="146mnv09mbjr7vwvwlds1jc91vzbj7df0kb70qmiav0a8bvslngi"; depends=[abind fields foreach]; }; funFEM = derive2 { name="funFEM"; version="1.2"; sha256="17pw743qnljwasj4cg8m8sg9j6piy7g69jr57aqmbizlfdqvvl05"; depends=[elasticnet fda MASS]; }; @@ -9479,7 +9516,7 @@ in with self; { future = derive2 { name="future"; version="1.23.0"; sha256="1y5qzpsg0r2dccynyybbb2ngxbl1y3phs1dq2jj3f2bwhc7chsfq"; depends=[digest globals listenv parallelly]; }; future_apply = derive2 { name="future.apply"; version="1.8.1"; sha256="1ix61bfbk43pwnjb0wk8lkfgdsy5zi8svk74gar5nrl90b5w6nqd"; depends=[future globals]; }; future_batchtools = derive2 { name="future.batchtools"; version="0.10.0"; sha256="1ly98h2g7wpfxp2r8vl1hy7wqqgwgawjagz0m2iczjmcj4ix6avk"; depends=[batchtools future]; }; - future_callr = derive2 { name="future.callr"; version="0.6.1"; sha256="037xgv604vrbdqx4zbai8nqd2d9cf47f0rwxd7iihr09y8qknd19"; depends=[callr future]; }; + future_callr = derive2 { name="future.callr"; version="0.7.0"; sha256="0y5x2xz29j7aidk3c1iby3dk23gpxmgzp4f5z5bdgd1w0n4jslg4"; depends=[callr future]; }; future_tests = derive2 { name="future.tests"; version="0.3.0"; sha256="1ssr0sd9h10151m5iaad17zqii7d18nnszq2svj0i8izk83xhrik"; depends=[cli crayon future prettyunits sessioninfo]; }; futureheatwaves = derive2 { name="futureheatwaves"; version="1.0.3"; sha256="122b2z86bzxfch67y6cpq8wj62mw0dgkzbmnpwi247kdx7w5mw1f"; depends=[data_table dplyr ggplot2 ggthemes leaflet Rcpp stringr tidyr]; }; fuzzr = derive2 { name="fuzzr"; version="0.2.2"; sha256="1cwq7a5j6lzrlz9dw3hsfap988rh1kkgf03yni7c33zl69xp5w77"; depends=[assertthat progress purrr]; }; @@ -9550,6 +9587,7 @@ in with self; { gamlss_data = derive2 { name="gamlss.data"; version="6.0-2"; sha256="07mpdl4h9rwmnpl9jmsn6ig8ji11an6pyjfsvg62h2alapwbdcyv"; depends=[]; }; gamlss_demo = derive2 { name="gamlss.demo"; version="4.3-3"; sha256="01p6abppwbnh2a2ks1g08z4iwq2fxf125y9s4qzssybsn76a3gf3"; depends=[gamlss_dist gamlss_tr rpanel]; }; gamlss_dist = derive2 { name="gamlss.dist"; version="6.0-1"; sha256="0m41n7zf7m0mh1w9ql70wqnzsf2f013ql699im7zmp6fdggb8qxm"; depends=[MASS]; }; + gamlss_foreach = derive2 { name="gamlss.foreach"; version="1.1-3"; sha256="0q9r92q21miisarbgvjdlqy6mp4b76ns49fw09zx8xypg74m2kl9"; depends=[doParallel foreach gamlss gamlss_data gamlss_dist glmnet]; }; gamlss_inf = derive2 { name="gamlss.inf"; version="1.0-1"; sha256="0m091zxjm5wvhm6mzbpzkr275n3qnlb3v4099k0a1jymahk4w7vr"; depends=[gamlss gamlss_dist]; }; gamlss_lasso = derive2 { name="gamlss.lasso"; version="1.0-1"; sha256="03c8k6hl23ag98dihznfz1h0qc3pwxbnpv58pvmx3xbb3lipfjfb"; depends=[gamlss glmnet lars Matrix]; }; gamlss_mx = derive2 { name="gamlss.mx"; version="6.0-0"; sha256="0b06nb6nq36ay0p5z57j5d4hrly5917wcsal7986mp1270iwnpip"; depends=[gamlss gamlss_dist nnet]; }; @@ -9584,7 +9622,7 @@ in with self; { gaston = derive2 { name="gaston"; version="1.5.7"; sha256="14z94dpln4dvgrv2w7w9ik7h6rpvbf02qhq1hqzx8c2cndzxr21i"; depends=[Rcpp RcppEigen RcppParallel]; }; gateR = derive2 { name="gateR"; version="0.1.9"; sha256="18q3bqjjzvrp20mdksps0ddjdz4i8crh26iirradiss4xphk0gm3"; depends=[fields lifecycle raster rlang sparr SpatialPack spatstat spatstat_core spatstat_geom spatstat_linnet tibble]; }; gatepoints = derive2 { name="gatepoints"; version="0.1.4"; sha256="0gwyrkxn4xd79cl60xa312k6nz17mdjdiym65dq7s2384fa80wbm"; depends=[]; }; - gauseR = derive2 { name="gauseR"; version="1.0"; sha256="125jjd7s9wkx93isgrr3d6bkdmdf1x7000pbj9y634wd1jx8akgd"; depends=[deSolve]; }; + gauseR = derive2 { name="gauseR"; version="1.1"; sha256="0jlbaylglyza6hlf62g3z0n349zlzlhx6g4jwdzg8b2sh4c3c9yn"; depends=[deSolve]; }; gaussDiff = derive2 { name="gaussDiff"; version="1.1"; sha256="0fqjdxp2ibbami75ba16d02dz4rz5sk8mni45di9anydx44g9d45"; depends=[]; }; gausscov = derive2 { name="gausscov"; version="0.1.1"; sha256="0d6b8kxh4pdkr0d6znnlkrqhnlmwr45malajjvvq9nrlhlpwz3vp"; depends=[]; }; gaussfacts = derive2 { name="gaussfacts"; version="0.0.2"; sha256="095x7k7m7sy1gqkbm6wiqn26252dclz62sbnkv6cjvmbdxajl7m9"; depends=[]; }; @@ -9599,6 +9637,7 @@ in with self; { gbm = derive2 { name="gbm"; version="2.1.8"; sha256="1h9f4ww9yc3nsvghgr2q7jjrlz29ibabxjbax1sk5wmqh2wy6pbx"; depends=[lattice survival]; }; gbm_auto = derive2 { name="gbm.auto"; version="1.5.0"; sha256="03fn5kr7pl1wzmmw6k86v2yv0a3l6pwyggvvdxsqnamd29jm5h54"; depends=[beepr dismo gbm mapplots maptools raster rgdal rgeos sf shapefiles]; }; gbm2sas = derive2 { name="gbm2sas"; version="2.1"; sha256="0ssjlv849vssmncn01ccpp2myqib5f3g88g0d4rqma2z0ivdpk23"; depends=[gbm]; }; + gbmt = derive2 { name="gbmt"; version="0.1.2"; sha256="1jk04wjykxb89b9m7ppyl6hp4z00f4vbmsrhisvzz184bwghigdf"; depends=[Matrix]; }; gbp = derive2 { name="gbp"; version="0.1.0.4"; sha256="0awg724gsfwlb0fjcvw0450qdsk4m8x8is16pj5c8fx6nc8rn8bv"; depends=[data_table magrittr Rcpp RcppArmadillo rgl]; }; gbs2ploidy = derive2 { name="gbs2ploidy"; version="1.0"; sha256="0gdjfqs9ccyaw7vi22wbyc742n1badr5ypr08g6rvi8ka5lmx836"; depends=[MASS rjags]; }; gbts = derive2 { name="gbts"; version="1.2.0"; sha256="1v8x4dnja8va28rjznyqa6js9wazndijasb95lfj2qwhxhgf5h65"; depends=[doParallel doRNG earth foreach gbm]; }; @@ -9618,10 +9657,10 @@ in with self; { gdalUtils = derive2 { name="gdalUtils"; version="2.0.3.2"; sha256="0krapdy50nd5dvcdflz39dzxpig3zklng3hgxavqg2nvwazalvsc"; depends=[foreach R_utils raster rgdal sp]; }; gdalcubes = derive2 { name="gdalcubes"; version="0.5.0"; sha256="074vidv9ccklbvfhfyzwr0pfqdvh9bdbh9xwlrd6bxbd0q4sq8gk"; depends=[jsonlite ncdf4 Rcpp RcppProgress]; }; gdata = derive2 { name="gdata"; version="2.18.0"; sha256="0zwdj7lscgxr8r62ii8hbdh4mb7sa9w4f5nv32zzrxdvymcpya2b"; depends=[gtools]; }; - gde = derive2 { name="gde"; version="0.1.4"; sha256="1ypax1gwi8f9fkfmbm5qb845b70ch44m19rw8spi34fn3yrbb17l"; depends=[data_table DBI dplyr DT ggplot2 httr jsonlite leaflet odbc progress R_utils readr rgbif shiny shinycssloaders shinyWidgets stringr XML]; }; + gde = derive2 { name="gde"; version="0.2.0"; sha256="1xrncdmidzz9dv51bnbcrdh92im0lr97xi4rgb30p5sfxc4axml9"; depends=[data_table dplyr DT ggplot2 httr jsonlite leaflet progress R_utils readr RSQLite shiny shinycssloaders shinyWidgets stringr XML]; }; gdiff = derive2 { name="gdiff"; version="0.2-2"; sha256="0hg9mf3qyg19wwpiv3lz2z1000jw73s2pwb8y8hjgpv69wwsskfi"; depends=[magick pdftools]; }; gdistance = derive2 { name="gdistance"; version="1.3-6"; sha256="093a29yb544gxldwxgkyfc9bhmz3by0pknnj1c666i6gz2rbxjic"; depends=[igraph Matrix raster sp]; }; - gdm = derive2 { name="gdm"; version="1.4.2.2"; sha256="0s81d8d7i95nvpfnppnwgg8raj9388a725j8hxjzgzqvypdlhx8p"; depends=[doParallel foreach raster Rcpp reshape2 vegan]; }; + gdm = derive2 { name="gdm"; version="1.5.0-1"; sha256="11pf56n8kdmqab88s2xhaz05jj19b5m758f6rfdm7qc01y97s3kb"; depends=[doParallel foreach raster Rcpp reshape2 vegan]; }; gdns = derive2 { name="gdns"; version="0.5.0"; sha256="1bicimkxsyfg9yqaikapwlv8x9xdvsb00fqnfka07i6b63109sxh"; depends=[httr jsonlite magrittr stringi tinytest]; }; gdpc = derive2 { name="gdpc"; version="1.1.2"; sha256="0g1mnxm78n928g7qjf0w7jzfm27z6mvz5p1rm25mxv7wsif5m6s6"; depends=[doParallel foreach Rcpp RcppArmadillo xts zoo]; }; gds = derive2 { name="gds"; version="0.1.1"; sha256="0gwq0k80rnbg4ibz6dz8sk6hqaklrdbv4vzv8zyk74am3aqipn20"; depends=[]; }; @@ -9652,6 +9691,7 @@ in with self; { genTS = derive2 { name="genTS"; version="0.1.3"; sha256="1ky8h8yzqfkb91ny9z08gr7irzvjqr1b42k89ahcrmk458hjwgqr"; depends=[shiny]; }; genalg = derive2 { name="genalg"; version="0.2.0"; sha256="1wzfamq8k5yhwbdx0wy1w5bks93brj0p890xxc4yqrja4w38ja3s"; depends=[]; }; genasis = derive2 { name="genasis"; version="1.0"; sha256="1r0733cc2hss3f8dp19s1ji55yp72mds7p3x1zvvpiks2r7w712p"; depends=[fitdistrplus Kendall]; }; + gencor = derive2 { name="gencor"; version="1.0.0"; sha256="1an1q4bbd5xqyy66wjzalx74iff0iia2sf2f1q9k17vh9zclgz41"; depends=[]; }; gencve = derive2 { name="gencve"; version="0.3"; sha256="00wbmaffm7mbfv3zl6mb24w1df1a8p24girwdh3a522lw3045iwf"; depends=[C50 class e1071 glmnet lars MASS nnet plus randomForest rpart]; }; gendata = derive2 { name="gendata"; version="1.1"; sha256="1r5bhmfblhk6d31v0byhp4a0pmpri6vk697zmmx9b0hvhda7mllf"; depends=[]; }; gender = derive2 { name="gender"; version="0.6.0"; sha256="18xiaif6iiwjvnjk611sfz7qi5r7mbi73dcrgrkzkjly8zygp42k"; depends=[dplyr httr jsonlite remotes]; }; @@ -9662,7 +9702,6 @@ in with self; { geneListPie = derive2 { name="geneListPie"; version="1.0"; sha256="0z2gawfzhm05dafj4zlj6ifmf0dy7p1hrpa59lzxrnrc0wr6laji"; depends=[]; }; geneNetBP = derive2 { name="geneNetBP"; version="2.0.1"; sha256="0sp1chyln5k2zsq7cdhvrqxwr2nhrll1pdl1l5g6fd4gjl2m1nwk"; depends=[bnlearn ggm gRain graph igraph Rgraphviz scales]; }; geneSignatureFinder = derive2 { name="geneSignatureFinder"; version="2014.02.17"; sha256="1s9jj87wnzzgm9hnws09yhrxdlb6jw56i3ddwznvmh8vpzrspv4h"; depends=[class cluster survival]; }; - genekitr = derive2 { name="genekitr"; version="0.2.1"; sha256="1xns8sq535w47l0pxja35pxgp4a5x0vnnyprmd363fi5ls9rwbi5"; depends=[clusterProfiler dplyr ggplot2 stringi stringr tibble tidyr VennDiagram]; }; genemodel = derive2 { name="genemodel"; version="1.1.0"; sha256="1x6n6k9ifv2swhyrghvm6fsz5vh85cdik8225175i9msvmkh928n"; depends=[stringr]; }; genepi = derive2 { name="genepi"; version="1.0.1"; sha256="1whhdlq9p8gmygv7464hvfz6dhm65gqq1dqls6hgpmw822zxgbd5"; depends=[]; }; genepop = derive2 { name="genepop"; version="1.1.7"; sha256="0b36nspq3kkad52k0viw1pdsf7h9h5ivi0ix7zg8i0z7vkhnm0cy"; depends=[Rcpp RcppProgress stringr]; }; @@ -9683,7 +9722,7 @@ in with self; { genlogis = derive2 { name="genlogis"; version="1.0.0"; sha256="01av5invhviii7adqihh10ib47rjzwfsqdgw3lfg1c72kzrqywgr"; depends=[distr doParallel foreach ggplot2 manipulate]; }; geno2proteo = derive2 { name="geno2proteo"; version="0.0.3"; sha256="1q054ai42f5gmrj791abj02f663zs7ymdh3pfs3b2lq6i4w9s2fb"; depends=[BiocGenerics GenomicRanges IRanges R_utils RUnit S4Vectors]; }; genoPlotR = derive2 { name="genoPlotR"; version="0.8.11"; sha256="01qn81nsdk3s150gqwisb7xnm4hq5sfzd2zrzpn9kj0rigzgf9zi"; depends=[ade4]; }; - genodds = derive2 { name="genodds"; version="1.0.0"; sha256="00sh561qcabcz5igcfvkjjila0qi2i5imj8cn0msa1gvqf27ps4d"; depends=[Rcpp]; }; + genodds = derive2 { name="genodds"; version="1.1.0"; sha256="1qsl134grmpk3yvgg106kawrx7g423jqlqgg9r2r46ry31i3hvhv"; depends=[Rcpp]; }; genogeographer = derive2 { name="genogeographer"; version="0.1.19"; sha256="0q56ysv5333i27iv1gmd9ilbgn3rw8sb9yq7z76gmn1fak5aqci8"; depends=[dplyr DT forcats ggplot2 knitr leaflet magrittr maps purrr readr rio rlang rmarkdown shiny shinycssloaders shinyjs shinyWidgets tibble tidyr]; }; genomeplot = derive2 { name="genomeplot"; version="1.0"; sha256="15v01ngxq7kxav1bhw1mvqradrmvwsad5xh9l5skivb5smh9795w"; depends=[ggplot2]; }; genomic_autocorr = derive2 { name="genomic.autocorr"; version="1.0-1"; sha256="1lidrjz1flxw4jvhqdi8y813m7ss4kkvm7bxsdpz60dxxw3204gm"; depends=[data_table magrittr reshape]; }; @@ -9768,7 +9807,7 @@ in with self; { gesisdata = derive2 { name="gesisdata"; version="0.1.0"; sha256="02xjpw41gm3778lj01kcwjx0lr1i95a0wlrfvs0r5xlajq13jr67"; depends=[dplyr magrittr rio RSelenium stringr]; }; gesso = derive2 { name="gesso"; version="1.0.1"; sha256="0s9vlh47v4dz8dwq5v6j7vbcs01g701ci1qkb0b26m7zksb4ra58"; depends=[BH bigmemory dplyr Matrix Rcpp RcppEigen RcppThread]; }; gestalt = derive2 { name="gestalt"; version="0.1.8"; sha256="1cb04rd3yvkd47byynrn0pq6brlsi2z2iavh4gfrwmqyvks34k51"; depends=[rlang]; }; - gestate = derive2 { name="gestate"; version="1.4.0"; sha256="1ybwi1733w8z97sdj38l66mb8ynhqhl68ijns6rvwqxphac6v5x8"; depends=[doParallel foreach shiny shinythemes survival]; }; + gestate = derive2 { name="gestate"; version="1.5.0"; sha256="028ij0yyqrwaf5c1a7qkgl0r0m9n98vn182brx923mfxr9gji6pn"; depends=[doParallel foreach shiny shinythemes survival]; }; gesttools = derive2 { name="gesttools"; version="1.2.0"; sha256="0w7kl3jm1n5pqbr10r81zzjk2lw5zvs22igsx807f6ldmq8knn7d"; depends=[DataCombine geeM magrittr nnet rsample tibble tidyr tidyselect]; }; getDTeval = derive2 { name="getDTeval"; version="0.0.2"; sha256="16y24jhy9k1adlmf6yqzc8kla2vw7r0c6zd52jpfkiljxwkm4634"; depends=[data_table formulaic microbenchmark]; }; getLattes = derive2 { name="getLattes"; version="0.2.0"; sha256="1rrd9x9jmnsy0770c86lqws4a6b2zxf3384h1dcvzrmlk20hhqxw"; depends=[dplyr janitor pipeR purrr rlang tibble xml2]; }; @@ -9851,7 +9890,8 @@ in with self; { gggenes = derive2 { name="gggenes"; version="0.4.1"; sha256="1s4knz2g06w46jbi037l9ii0kkxvl7gnljp54s4z36hnswsrv8jk"; depends=[ggfittext ggplot2 rlang]; }; ggghost = derive2 { name="ggghost"; version="0.2.1"; sha256="0kvsjadxxdf6yvzk4a6yqkg02q1ysslvf3m0a369bdim396z4hnv"; depends=[animation ggplot2]; }; gggibbous = derive2 { name="gggibbous"; version="0.1.1"; sha256="1sy9d9hl04b13yz4563bzsdznjdh3xmikdrsqg8kdv8wn481lqbd"; depends=[ggplot2 scales]; }; - ggh4x = derive2 { name="ggh4x"; version="0.2.0"; sha256="0gv9ckkdqbcjknzsv8h3955wnikawdfypr279v74hvwyq86af29r"; depends=[ggplot2 gtable rlang scales vctrs]; }; + gggrid = derive2 { name="gggrid"; version="0.1-1"; sha256="0s377jh3lma9la6qml6hc1w3bxlzdmy8fz749s27n3ygpy2krg21"; depends=[ggplot2]; }; + ggh4x = derive2 { name="ggh4x"; version="0.2.1"; sha256="1r49yfm5fqv5s7jb92ad6rf8hd9plcry6f500czjhnhhrp16cqfp"; depends=[ggplot2 gtable rlang scales vctrs]; }; gghalfnorm = derive2 { name="gghalfnorm"; version="1.1.2"; sha256="1sy0m6pqmnjbqv60rljyblhis0dxwkhw751jhlad5arcgrcwf4k8"; depends=[ggplot2 ggrepel]; }; gghalves = derive2 { name="gghalves"; version="0.1.1"; sha256="1w4j8grir1i8ar7fdsk4f6czkl5j2wwn67y746mis2diwnzhcil3"; depends=[ggplot2 gtable]; }; ggheatmap = derive2 { name="ggheatmap"; version="2.1"; sha256="1dks2fmkaaws5v7mgcw6rbvb5nfr7c9mmg0pqwywwx7rxj3gm05q"; depends=[aplot factoextra ggplot2 ggpubr patchwork tibble tidyr]; }; @@ -9907,11 +9947,11 @@ in with self; { ggpubr = derive2 { name="ggpubr"; version="0.4.0"; sha256="0x86lmghr25k8w90yrp360dn42dhp5cjvjpdiv2s2gxfn701xcmb"; depends=[cowplot dplyr ggplot2 ggrepel ggsci ggsignif glue gridExtra magrittr polynom purrr rlang rstatix scales tibble tidyr]; }; ggpval = derive2 { name="ggpval"; version="0.2.4"; sha256="0zi3k79iy8pwnrgi9r9l4r9ghv1db9cxsagif8wsrlak4nr8akza"; depends=[data_table ggplot2]; }; ggquickeda = derive2 { name="ggquickeda"; version="0.2.1"; sha256="1yql17wla60lg713cd4kr4906i4ngkvyg0s962zpri76g2z3acvv"; depends=[colourpicker dplyr DT Formula GGally ggbeeswarm ggplot2 ggpmisc ggpubr ggrepel ggstance gridExtra Hmisc markdown plotly quantreg rlang RPostgres scales shiny shinyFiles shinyjqui shinyjs stringr survival survminer table1 tidyr zoo]; }; - ggquiver = derive2 { name="ggquiver"; version="0.3.0"; sha256="1by2drrikssn0dckxgcdscvyqva7mfcpim6y0hrrqwjv6ld8a6q3"; depends=[ggplot2]; }; + ggquiver = derive2 { name="ggquiver"; version="0.3.1"; sha256="1wnp5jqy6myfax9jgpxm6crqc2aqkrv0l44ahw9ybiw9b8kwk9x4"; depends=[ggplot2]; }; ggraph = derive2 { name="ggraph"; version="2.0.5"; sha256="0m4n8iw2b9jk8hcy5blg5w59zsqcpsbv27wbw598dvljpafx8sp3"; depends=[digest dplyr ggforce ggplot2 ggrepel graphlayouts gtable igraph MASS Rcpp rlang scales tidygraph viridis withr]; }; ggraptR = derive2 { name="ggraptR"; version="1.3"; sha256="1i6jp0n1sz5b4sv3d4h5624zhlknih2qp6p2m2ri6s3gsh1pl9zz"; depends=[dplyr ggplot2 pacman purrr shiny]; }; ggrasp = derive2 { name="ggrasp"; version="1.0"; sha256="0lini89mcxl30kx38vny9896hdf4afrz5dgivbbikkb2yyfh2cq1"; depends=[ape bgmm colorspace ggplot2 mixtools]; }; - ggrastr = derive2 { name="ggrastr"; version="0.2.3"; sha256="0cwhgxxp23alsmccppx5bn5ri8wp5n5012d1m51rg7ss6q1194wc"; depends=[Cairo ggbeeswarm ggplot2 png ragg]; }; + ggrastr = derive2 { name="ggrastr"; version="1.0.0"; sha256="1glv6lsfxlrwbk7dxnpj9x2q0hhzkivfzasifqw5ry92gs7ld0g6"; depends=[Cairo ggbeeswarm ggplot2 png ragg]; }; ggrepel = derive2 { name="ggrepel"; version="0.9.1"; sha256="1z5xyr5f4aryy0v1gzz9m8m4s5fzzwbrf0fxll1nbflr8xnr3yr9"; depends=[ggplot2 Rcpp rlang scales]; }; ggridges = derive2 { name="ggridges"; version="0.5.3"; sha256="0bmlqy1p6rac90af97ffpdi6php7dblx66l2hcm8ljidgyqzmspm"; depends=[ggplot2 plyr scales withr]; }; ggrisk = derive2 { name="ggrisk"; version="1.3"; sha256="02df3gcviax747d33v30m97jsazj7zdpjnhypfy38cg70yxidwg9"; depends=[cutoff do egg ggplot2 nomogramFormula reshape2 rms set survival]; }; @@ -9969,7 +10009,7 @@ in with self; { giphyr = derive2 { name="giphyr"; version="0.2.0"; sha256="0273f7lama8bhaalafs66m6ksp32vx0j6rmh1qr4484i7wkmdfqn"; depends=[dplyr httr miniUI purrr rstudioapi shiny tibble]; }; giscoR = derive2 { name="giscoR"; version="0.3.1"; sha256="1120ixjcvzm3yk8mfradvp469abpxgna4nwk1v1fa14gkyf6kqzs"; depends=[countrycode geojsonsf rappdirs sf]; }; gistr = derive2 { name="gistr"; version="0.9.0"; sha256="0ac9ikrdg6i8xvlma0gizvsdva46408lk7hvsgkqirhy2ljy02hp"; depends=[assertthat crul dplyr httr jsonlite knitr magrittr rmarkdown]; }; - git2r = derive2 { name="git2r"; version="0.28.0"; sha256="1wjmbs9cmm16pm3g0rmqp7cxxyh95m5lgx4fx5bpgj6j466i8vff"; depends=[]; }; + git2r = derive2 { name="git2r"; version="0.29.0"; sha256="13nlrhma6kavvhranb43w3003vadfkyrn2f4l3r63iqavj0s3xzq"; depends=[]; }; git2rdata = derive2 { name="git2rdata"; version="0.3.1"; sha256="0nvx6lfp66l44n3xwkj5biirrzwvl52dssfx8jysqjl1kgfrwwh3"; depends=[assertthat git2r yaml]; }; gitcreds = derive2 { name="gitcreds"; version="0.1.1"; sha256="1snzn7nxy0rwz0bzjsg6k04c0n811dgn8gn9cmn2v78aj57ayjmi"; depends=[]; }; gitdown = derive2 { name="gitdown"; version="0.1.3"; sha256="0sspwbymzalf4fh180cpjv8mymh8j8v7absnc6mrix2bd89jymsd"; depends=[attempt bookdown dplyr git2r knitr magrittr purrr rmarkdown stringi tidyr]; }; @@ -9994,7 +10034,7 @@ in with self; { glba = derive2 { name="glba"; version="0.2"; sha256="0ckcz6v6mfbv34s8sp086czhb5l58sky79k84332rrz6wj47p3md"; depends=[]; }; glca = derive2 { name="glca"; version="1.3.3"; sha256="1fgbwgn2v7l7ikwl88fkzvikhzb5hgwlawly50rml5w8jcfm0nkz"; depends=[MASS Rcpp]; }; glcm = derive2 { name="glcm"; version="1.6.5"; sha256="13my6y9jqd86cg5n74p4b8mqbdgwnanxx4qf1rrhm5jxf6sa31qm"; depends=[raster Rcpp RcppArmadillo]; }; - gld = derive2 { name="gld"; version="2.6.2"; sha256="1wrw7i5bq7rb2ahadm57y9fmr697r7lp9ln7ajcd592b0nn60n4i"; depends=[e1071 lmom]; }; + gld = derive2 { name="gld"; version="2.6.3"; sha256="0nln1vwzmjdsawln2v3jmyszvnn0203r47pdf8chvbr31hpvzjc2"; depends=[e1071 lmom]; }; gldrm = derive2 { name="gldrm"; version="1.5"; sha256="1mbdxqjw6sa47kigwrjq1gn6vi36zhg9j2lck144iwa10ms0y9xp"; depends=[]; }; glinternet = derive2 { name="glinternet"; version="1.0.12"; sha256="0aphdscj0s6kqxlkgqkw2d6snrylz6hiis6307pl8ldh7q5cvm33"; depends=[]; }; gllm = derive2 { name="gllm"; version="0.37"; sha256="169y3yz947d8qdphqv2a6yrdash6v2h9jfvj2fk7rcpmz0r45kl6"; depends=[]; }; @@ -10062,7 +10102,7 @@ in with self; { gmp = derive2 { name="gmp"; version="0.6-2.1"; sha256="1mj7hy6riaxl9n4q2cnyyjazwad90xbjszk25si968618rih4n64"; depends=[]; }; gms = derive2 { name="gms"; version="0.4.0"; sha256="1m7bhy4vsz6l09pal9ibjlskmbyjmc29hqwjim1x8yansd5bxpzv"; depends=[dplyr rlang stringr yaml]; }; gmt = derive2 { name="gmt"; version="2.0.2"; sha256="0z5abh0kw97y90nxkkxxg2xgv1avxijf71v88lwhy25jgv8r7b38"; depends=[]; }; - gmvarkit = derive2 { name="gmvarkit"; version="1.5.0"; sha256="1b1c7ppmvns72rk37d7nav6h38hyr6qaqrl0f7j4fh1pz9w377kh"; depends=[Brobdingnag mvnfast pbapply]; }; + gmvarkit = derive2 { name="gmvarkit"; version="2.0.0"; sha256="1wg8dyfzyqlav0a0zn0gma2gqgnw0j7sqy7g9n0rz9f6j4j95f3r"; depends=[Brobdingnag gsl mvnfast pbapply]; }; gnFit = derive2 { name="gnFit"; version="0.2.0"; sha256="0cji4zjslh18dfj0l827r6br4hx2f0akiaxrg7fhhyyyhgdcjnsm"; depends=[ismev rmutil]; }; gnlm = derive2 { name="gnlm"; version="1.1.1"; sha256="1krbz791l5qc06sh6my0bkq420b5afncw87lhyx1yiml2yg46zrk"; depends=[rmutil]; }; gnm = derive2 { name="gnm"; version="1.1-1"; sha256="1lddsdsg43wpg681s906i4xqqfbjdd1qb9ml5dfprb02i1806aa2"; depends=[MASS Matrix nnet qvcalc relimp]; }; @@ -10095,7 +10135,7 @@ in with self; { googlePolylines = derive2 { name="googlePolylines"; version="0.8.2"; sha256="1z8ml0xiyqy1ygairgs9w10q4a7msd6gkzjv7kf6r8xv4bpc02pd"; depends=[BH Rcpp]; }; googlePrintr = derive2 { name="googlePrintr"; version="0.0.1"; sha256="19rm78x8qd61ilc6h1kn3dw63m6dfsckqkd3n76krvi0akgl72w5"; depends=[googleAuthR httr jsonlite]; }; googlePublicData = derive2 { name="googlePublicData"; version="0.16.1"; sha256="15hyslpqvncg21q581h061rfyg99y8lavqw1x8hzl7xzd49bn9r5"; depends=[readxl XML]; }; - googlePubsubR = derive2 { name="googlePubsubR"; version="0.0.1"; sha256="0fvxyyh1i14353sk3qy3xs7sc75fjkspmb1yl2b83vzsai8zgz10"; depends=[cli googleAuthR magrittr]; }; + googlePubsubR = derive2 { name="googlePubsubR"; version="0.0.2"; sha256="1paw25q5p82m60dyxn38qi4ykranrr0gb253a7nhh5nckb4rz7hi"; depends=[cli googleAuthR magrittr]; }; googleTagManageR = derive2 { name="googleTagManageR"; version="0.1.6"; sha256="1y2avhgvzrpmpyx341di8ml2pdj10y8sdhn7zwjpxgzrxkmf4xxi"; depends=[assertthat dplyr future googleAuthR httr jsonlite purrr]; }; googleVis = derive2 { name="googleVis"; version="0.6.10"; sha256="0jjqlcxfbpkl2kdpp8vr27yi178ryg62yy7rjafzda1npg010f3x"; depends=[jsonlite]; }; googledrive = derive2 { name="googledrive"; version="2.0.0"; sha256="09jsiknzyfgxd0nzdr3wrrjw24allch2x74h96qg8vh8dad4cp30"; depends=[cli gargle glue httr jsonlite lifecycle magrittr pillar purrr rlang tibble uuid vctrs withr]; }; @@ -10115,8 +10155,8 @@ in with self; { gpbStat = derive2 { name="gpbStat"; version="0.3.5"; sha256="1inmh8r02fn48p2f150d3prxlkf61549027vc64a3kyyk5q167ib"; depends=[data_table dplyr magrittr]; }; gpboost = derive2 { name="gpboost"; version="0.6.7"; sha256="1q2y4vb3lf0phpgag8mj6wigrkzij4hl5amx1fv7f8b4aypz55xx"; depends=[data_table Matrix R6 RJSONIO]; }; gpclib = derive2 { name="gpclib"; version="1.5-6"; sha256="11jjgg74l8hy9jz4jylhriqnzv8jcf12y1bkx22v29z3fhgkwkps"; depends=[]; }; - gpg = derive2 { name="gpg"; version="1.2.3"; sha256="1dm68bkwgffb6304q1dzjdd9acih36j5pn8jwkh3a331g23g6jii"; depends=[askpass curl]; }; - gpindex = derive2 { name="gpindex"; version="0.3.6"; sha256="1yc30ywyignr70kzfhnsy0ikda5b6d1wn31hcrrsc99yhagz2lpn"; depends=[]; }; + gpg = derive2 { name="gpg"; version="1.2.4"; sha256="1g2ihywx1rdz1vwmgd6l7kgzvqq09c8451kw9yvd7ch8pmfffs2d"; depends=[askpass curl]; }; + gpindex = derive2 { name="gpindex"; version="0.3.9"; sha256="18qja4chz91qybc07xcxcrbvgng5ybd03v9965wcivd2w2xrpxq6"; depends=[]; }; gpk = derive2 { name="gpk"; version="1.0"; sha256="1zfhkqyypb24mhbj2zi9qy3gw0kqxvlp8j5ni3zm7k5rz1bnrygg"; depends=[]; }; gplite = derive2 { name="gplite"; version="0.12.0"; sha256="1cm846jayqvb3xrd3h6pxq6wmww1ghhkr6dffschk0xycix6alw9"; depends=[Matrix Rcpp RcppArmadillo]; }; gplm = derive2 { name="gplm"; version="0.7-4"; sha256="0apvj14nl5qbi4dhhdx5nih5lvjwfcipvr8cyk6xsz4r5gfr2iw4"; depends=[AER]; }; @@ -10152,7 +10192,7 @@ in with self; { graphicalExtremes = derive2 { name="graphicalExtremes"; version="0.1.0"; sha256="1cc4xcb72yci2gq2zn3g1nh3ba802anpymm0hajdbz3kb0wz1gyn"; depends=[igraph matrixcalc mvtnorm Rdpack]; }; graphicalVAR = derive2 { name="graphicalVAR"; version="0.3"; sha256="1mvv03zkqp5f7q2nnvpj2gq1v67vp42qr7cm0a20cfvp2gsxq0h5"; depends=[dplyr glasso glmnet igraph Matrix mvtnorm qgraph Rcpp RcppArmadillo rlang]; }; graphkernels = derive2 { name="graphkernels"; version="1.6"; sha256="1gn3ihqz7m0rdvvc2fp7hsgq583wh5cnz7200a2ff89xc04zs3dc"; depends=[igraph Rcpp RcppEigen]; }; - graphlayouts = derive2 { name="graphlayouts"; version="0.7.1"; sha256="05v7ss18bflhqa4ipsca8iw2ln8ddbaiyrizx2a5cwq81g5qq3rq"; depends=[igraph Rcpp RcppArmadillo]; }; + graphlayouts = derive2 { name="graphlayouts"; version="0.7.2"; sha256="0vncg1pfnwrfkjfwz5k86b0ir8vnjkbyd0kzpbgb0cpkdz7987pc"; depends=[igraph Rcpp RcppArmadillo]; }; graphon = derive2 { name="graphon"; version="0.3.5"; sha256="1x61pdsb3s1vi1iiy9pjq0iz0m5j5b6q3rqhwvx9kvmg4r8yifpv"; depends=[Rdpack ROptSpace]; }; graphql = derive2 { name="graphql"; version="1.5"; sha256="0zi1l93yk5rlgdy4j2nph14w0h8kgvnbzk9fi2jfys8s3fz54ksr"; depends=[jsonlite Rcpp]; }; graphsim = derive2 { name="graphsim"; version="1.0.2"; sha256="09is0yr17vxr08zb3p240n0aapm63418dzx4ilwq08y8050jqqr7"; depends=[gplots igraph Matrix matrixcalc mvtnorm]; }; @@ -10166,7 +10206,7 @@ in with self; { grec = derive2 { name="grec"; version="1.4.1"; sha256="1vy3idjvayzx9j9pf5bv5bxycjca3w3c4x4lzzbrdi3c97508sa8"; depends=[imagine raster]; }; greed = derive2 { name="greed"; version="0.5.1"; sha256="1g33wzcld9gh4x7nhbfb022xjrn2lz8dwf4aqir8ymm0sr6cln87"; depends=[cba future GGally ggplot2 ggpubr listenv Matrix Rcpp RcppArmadillo RSpectra]; }; greekLetters = derive2 { name="greekLetters"; version="0.0.7"; sha256="0r6c4y6dnd3mm5i7y5cy7xz3w2j7qkfkkvxg9ig138has6115gjj"; depends=[assertthat stringr]; }; - greeks = derive2 { name="greeks"; version="0.3.1"; sha256="1j89ah5wcy6c3mxq3xh35sanq6idam6ki194c5kmms4sy1z4q472"; depends=[dqrng magrittr matrixStats Rcpp]; }; + greeks = derive2 { name="greeks"; version="0.4.0"; sha256="0m36a1xnvxvhbn2ilqjj9ii028brccj0xi5ylv1p38lq7zx3awd1"; depends=[dqrng magrittr matrixStats Rcpp]; }; greenclust = derive2 { name="greenclust"; version="1.1.0"; sha256="198ix55x8cl5wx09p6ahzy3bvig86mvqf2qywjfilp6b4hnjgk7l"; depends=[]; }; gregRy = derive2 { name="gregRy"; version="0.1.0"; sha256="1b8c8wwp8r2v51ayy7rbav24wfz75z1pylg0p4vsasaw9p06dlbz"; depends=[dplyr magrittr purrr tidyr]; }; gremlin = derive2 { name="gremlin"; version="1.0.1"; sha256="1pi1bksxmjmzclppgbqqg93swf4d72d2mr8bsxv7ndcdjr69xd5r"; depends=[Matrix nlme]; }; @@ -10200,6 +10240,7 @@ in with self; { groundhog = derive2 { name="groundhog"; version="1.5.0"; sha256="1d1shs518b5x526d07fpsa730bfvljp3vv4v8pbqxln4xk4h5zhi"; depends=[]; }; groupICA = derive2 { name="groupICA"; version="0.1.1"; sha256="1wl828ligvvw55xic383gdn7aq4mbwsnkl4ym6f71jn5g3p36d0i"; depends=[MASS]; }; groupRemMap = derive2 { name="groupRemMap"; version="0.1-0"; sha256="1bfp746j0dx7kk44nyjqmimvgw14par9ayvqxnzldc05qsazjdwx"; depends=[]; }; + groupTesting = derive2 { name="groupTesting"; version="1.0.0"; sha256="00jy1gw6whslmfcqic99hmbxh2z75rj14cjzrm5mnpcajn37s66j"; depends=[pracma]; }; groupWQS = derive2 { name="groupWQS"; version="0.0.3"; sha256="1c5yrsfgkhbg1fcjbrilfmf0phjry5z34536yfizc8wbc7mmmj0c"; depends=[glm2 MASS rjags Rsolnp]; }; groupdata2 = derive2 { name="groupdata2"; version="2.0.0"; sha256="1s642fj0zwr6lw5dwf4y351igz0y2yl7g42wa8wi1wpa65p62553"; depends=[checkmate dplyr lifecycle numbers plyr purrr rearrr rlang tibble tidyr]; }; grouped = derive2 { name="grouped"; version="0.6-0"; sha256="1glxgacpwk7yjbkwg5ci6bmb2il6hf5zhydwi5bbq6hc032m9976"; depends=[MASS]; }; @@ -10235,7 +10276,7 @@ in with self; { gsignal = derive2 { name="gsignal"; version="0.3-2"; sha256="1yw3srky82wqwvbjdfdd718ay965qnrwq7lnflzdg1j0f7nxj6iw"; depends=[pracma Rcpp]; }; gsisdecoder = derive2 { name="gsisdecoder"; version="0.0.1"; sha256="1h7a9j4gsdk8nasfkzfizlarx335ra0j0yz98a2000v2qzm2a5qy"; depends=[Rcpp]; }; gsl = derive2 { name="gsl"; version="2.1-7.1"; sha256="118rj9kjx9rzlynvhrly19qz3yxg8jzws35971ssgzrp5lwd367f"; depends=[]; }; - gslnls = derive2 { name="gslnls"; version="1.0.2"; sha256="0vdw6iqh03km1s59piwr77a1yrignxlb48vr3871j061yna8ijdq"; depends=[]; }; + gslnls = derive2 { name="gslnls"; version="1.1.0"; sha256="1xmd9369q4y7wzf0lbvciwka233fjbgjq13s1ssp56xzhhigaiya"; depends=[Matrix]; }; gsloid = derive2 { name="gsloid"; version="0.1.0"; sha256="1ma5si86ynfsis0pnw8hyv6xc4frbkhy5ks03mr0z16gasffkycg"; depends=[]; }; gsmoothr = derive2 { name="gsmoothr"; version="0.1.7"; sha256="00z9852vn5pj04dhl3w36yk0xjawniay6iifw1i7fd8g98mgspxp"; depends=[]; }; gsrs = derive2 { name="gsrs"; version="0.1.1"; sha256="0x5fll59l000dqszy0gmhsfqgpaljc57j1grqg5c7y1p3vji38in"; depends=[doParallel foreach MASS]; }; @@ -10256,7 +10297,7 @@ in with self; { gtfs2gps = derive2 { name="gtfs2gps"; version="1.5-4"; sha256="0hqqi4gm6zbrys0yd0ayyas2pxfx4r98fi45rfmdzffrx8qd0p9r"; depends=[data_table furrr future gtfsio lwgeom magrittr pbapply progressr raster Rcpp readr rgdal rgeos sf sfheaders sp units]; }; gtfsio = derive2 { name="gtfsio"; version="1.0.0"; sha256="05210ii5b754ryk296knqm3sf9yi5xwvcrq6rb9w71njqgvykwcj"; depends=[data_table zip]; }; gtfsrouter = derive2 { name="gtfsrouter"; version="0.0.5"; sha256="0yxgc4pi0g2wqswvwba0ij263i8b8p6wgsy6hbvklq0gim616shi"; depends=[cli data_table geodist Rcpp]; }; - gtfstools = derive2 { name="gtfstools"; version="0.1.0"; sha256="02v455r1a9rf2hqpw0a547jvbx6hrb26jwhjx68spmh9rrc5zpkz"; depends=[checkmate data_table sf sfheaders units zip]; }; + gtfstools = derive2 { name="gtfstools"; version="1.0.0"; sha256="0qwpnhjl80g0h0samsh8hs3df85ax329aaaxgjzn5b8h6xi31p6z"; depends=[checkmate cpp11 data_table gtfsio sf sfheaders units]; }; gtheory = derive2 { name="gtheory"; version="0.1.2"; sha256="1xc1jl69z5csalqk3hx83s53awcl1fjq6p0x2pczhs7dsvwd6lks"; depends=[lme4]; }; gtools = derive2 { name="gtools"; version="3.9.2"; sha256="0lx97yafrms2mjym8rhcq5586z7s1iqgy8qfm4px3xl1yn5qkc83"; depends=[]; }; gtop = derive2 { name="gtop"; version="0.2.0"; sha256="1nvvbf181x0miw3q0r2g0nklz29ljdsd07cazaajfls7pmhi0xw9"; depends=[hts lassoshooting quadprog]; }; @@ -10279,6 +10320,7 @@ in with self; { gvlma = derive2 { name="gvlma"; version="1.0.0.3"; sha256="16dhd407bwjs91c3p9kk43646197s7n9vbyghxb4ckrpv3fsaxp0"; depends=[]; }; gwaRs = derive2 { name="gwaRs"; version="0.3.0"; sha256="1mjwsf1sbrd88psiz6f74zddv1wvhpxk5nxbfjpdrxs74rkc36fs"; depends=[data_table dplyr ggplot2 ggrepel RColorBrewer scales tidyr]; }; gwasforest = derive2 { name="gwasforest"; version="1.0.0"; sha256="122fg4pc409lvw4yvrc8ijm6d6j29b4aacd319a16caxkkydgwlb"; depends=[colorspace data_table dplyr ggplot2 ggrepel glue]; }; + gwasrapidd = derive2 { name="gwasrapidd"; version="0.99.12"; sha256="0pn7mdip361s2l3nqmjl0zqmr0g5406cfr1v5l20m2gkacxqfds6"; depends=[assertthat concatenate dplyr glue httr jsonlite lubridate magrittr pingr plyr progress purrr rlang stringr testthat tibble tidyr urltools]; }; gwdegree = derive2 { name="gwdegree"; version="0.1.1"; sha256="0p06hjp7vay83kbpqsgfr1d8z3ayv483rxbv86fdka94gvi1sjyc"; depends=[dplyr ergm ggplot2 gtools magrittr network scales shiny shinydashboard sna tidyr]; }; gwer = derive2 { name="gwer"; version="3.0"; sha256="0jiq5v37mbn6y7vl5gs8qahb796jrfqj0m54sd38vim8yhhjwfy8"; depends=[assertthat glogis GWmodel maptools Matrix sp spData spdep spgwr]; }; gwerAM = derive2 { name="gwerAM"; version="1.0"; sha256="1c3rzd1jf52a4dn63hh43m9s9xnjvqn67amlm9z1ndrnn6fwfg1b"; depends=[MASS Matrix]; }; @@ -10347,7 +10389,7 @@ in with self; { hdbm = derive2 { name="hdbm"; version="0.9.0"; sha256="0lvaica195chl6bb10wvvr7fbmh8b954fpxcm9r0gyp0d0i2a2w4"; depends=[Rcpp RcppArmadillo]; }; hdd = derive2 { name="hdd"; version="0.1.0"; sha256="0hnqjfp78s8fiabibf0dl57sj170ri1ysf7pyrk45z4qsnizbyn2"; depends=[data_table fst readr]; }; hddplot = derive2 { name="hddplot"; version="0.59"; sha256="18llkpawm12cjxlcrlra60m16virfpjqiaqkvy9mb3wq1zif61rh"; depends=[MASS multtest]; }; - hdf5r = derive2 { name="hdf5r"; version="1.3.4"; sha256="0lxbdw1xf5yp82fkdj4wzp5mslay3qxd65459vh09dj131h5gl34"; depends=[bit64 R6]; }; + hdf5r = derive2 { name="hdf5r"; version="1.3.5"; sha256="0bv2q4ir73sbk5ra2q4mc8wbcmiwkws8k0mjlnx9ysi2mdrm3dw7"; depends=[bit64 R6]; }; hdfqlr = derive2 { name="hdfqlr"; version="0.6-2"; sha256="07lfr0vblahh3xhckwmzbmlja0janb73qkl4663mqgp6xk21jmi1"; depends=[]; }; hdi = derive2 { name="hdi"; version="0.1-9"; sha256="0k35zqz58lcx5p7ijhks4j7kqp553zggvrx4lh6k4s85lp601x22"; depends=[glmnet linprog MASS scalreg]; }; hdiVAR = derive2 { name="hdiVAR"; version="1.0.1"; sha256="0rq5vsi0s3y9rkkzijkicrlg55vjqklniizmx4dqs3ib18jbh94l"; depends=[abind lpSolve]; }; @@ -10361,7 +10403,7 @@ in with self; { healthcareai = derive2 { name="healthcareai"; version="2.5.0"; sha256="05qsmgrnaagnavlrs9c6j01j9c3lcc9j7cmbrx3y6lb6pf4zs195"; depends=[caret cowplot data_table dplyr e1071 generics ggplot2 glmnet lubridate MLmetrics purrr ranger recipes rlang ROCR stringr tibble tidyr xgboost]; }; healthfinance = derive2 { name="healthfinance"; version="0.1.0"; sha256="163zhdd5mqp0q872dmr3xzw2ppapnwp46rr7vkkfnglz635nxvpz"; depends=[ggplot2 lubridate readr scales shiny tibble]; }; healthyR = derive2 { name="healthyR"; version="0.1.6"; sha256="1px9c0i0qf0b85nbwjv0cccy2viqvi6c2pd1vx3s6yncj3vx3a5x"; depends=[cowplot dplyr ggplot2 ggrepel lifecycle lubridate magrittr plotly purrr rlang scales sqldf stringr tibble tidyr timetk writexl]; }; - healthyR_ai = derive2 { name="healthyR.ai"; version="0.0.2"; sha256="1gvqanwzdimp093yvvrf2f542n3jgz1wah53bgsl954bd3vp4yaz"; depends=[broom dplyr forcats ggplot2 ggrepel h2o magrittr parsnip purrr recipes rlang rsample tibble tidyr timetk]; }; + healthyR_ai = derive2 { name="healthyR.ai"; version="0.0.3"; sha256="17l659vilk2lrgga27jrm0r6ap7j8zrwx34abfjgp6389jdnm5cd"; depends=[broom dplyr forcats ggplot2 ggrepel h2o magrittr parsnip purrr recipes rlang rsample tibble tidyr]; }; healthyR_data = derive2 { name="healthyR.data"; version="1.0.1"; sha256="18b7aqdy9a0ldf2ib2d0a07k6bfmgdp61y8hl8yl19v35nqj6dvh"; depends=[]; }; healthyR_ts = derive2 { name="healthyR.ts"; version="0.1.5"; sha256="00pyqy3qzmg440fx91bk9yczdn0fikdy50dq2wlzzd5h83i6bwx4"; depends=[cowplot dplyr earth forcats ggplot2 lubridate magrittr modeltime parsnip plotly purrr recipes rlang stringi tibble tidyquant tidyr timetk workflowsets]; }; healthyverse = derive2 { name="healthyverse"; version="1.0.1"; sha256="088vf0va382341jri9y8p5ygdz76jv3fnjf6y0ldf535grifb3dc"; depends=[cli crayon dplyr healthyR healthyR_ai healthyR_data healthyR_ts magrittr purrr rlang rstudioapi tibble]; }; @@ -10385,12 +10427,12 @@ in with self; { helsinki = derive2 { name="helsinki"; version="1.0.5"; sha256="1vf023n93cq67dk139rszj3y8bc91z7rlagrv2z0y8mqpndi03am"; depends=[curl dplyr httpcache httr jsonlite purrr sf xml2]; }; heplots = derive2 { name="heplots"; version="1.3-9"; sha256="09cjy8g1rpvq0x2j317s68kb9ida1wsqr29aigbw4fc23nab66cx"; depends=[car MASS]; }; here = derive2 { name="here"; version="1.0.1"; sha256="0srlr8h8qmr0wrmp7gs4g2ry5dni2hx8n947bik3s3a26f091v88"; depends=[rprojroot]; }; - hereR = derive2 { name="hereR"; version="0.8.1"; sha256="0pyg9lbgfsiw3sp4jnl4y0k02ih3395bwcrfax04y5v1ix5j4i7r"; depends=[crul curl data_table flexpolyline jsonlite sf stringr]; }; + hereR = derive2 { name="hereR"; version="0.8.2"; sha256="18m70jp94i5pi3jaap3av0qpbrmbi5xvx4ab92h11f10lxkaa0j5"; depends=[crul curl data_table flexpolyline jsonlite sf stringr]; }; hergm = derive2 { name="hergm"; version="4.1-8"; sha256="1razjdiv33wrfkqsb234aw9j2sw049jnw9758jwjp48j8566d8k6"; depends=[ergm igraph intergraph latentnet Matrix mcgibbsit mlergm network Rcpp sna stringr]; }; heritEWAS = derive2 { name="heritEWAS"; version="0.2.0"; sha256="0yss9vf2m9szq8xi5i2nhf85mfvzvhv6c1f4kvvb2z9lmaicjni5"; depends=[]; }; heritability = derive2 { name="heritability"; version="1.3"; sha256="0a0pw8hppkgypl4jaa38hks9nxfwz2zbsd4w6w40j1hxlyy4km8m"; depends=[MASS]; }; hermite = derive2 { name="hermite"; version="1.1.2"; sha256="0j9s7ayvbvmgwybrvf703b72qbn8gskb105pis19ig2sslllzda3"; depends=[maxLik]; }; - hermiter = derive2 { name="hermiter"; version="2.0.3"; sha256="0vq39kfr8hpxsijg6452bx47yzaqqv69mx612pp97z0a0kllg2a2"; depends=[BH Rcpp]; }; + hermiter = derive2 { name="hermiter"; version="2.1.0"; sha256="1z9zrmyxx7dgsi0zblp15saw1iz79sc2r9zyirdzqmz010rnm19y"; depends=[BH Rcpp]; }; hero = derive2 { name="hero"; version="0.4.7"; sha256="129v2pjbxm5aalr5lfx0kh20rhwksnb80pc459pxg0xkwxvy1l3d"; depends=[fields Matrix optimx pbapply rgeos sp]; }; hesim = derive2 { name="hesim"; version="0.5.1"; sha256="0w79ka88bafkcs7bjsyl7z2v44cd4xjv3xqyk764jamzfcfhanzq"; depends=[data_table flexsurv ggplot2 MASS msm R6 Rcpp RcppArmadillo survival]; }; hetGP = derive2 { name="hetGP"; version="1.1.4"; sha256="1nm4kkg0jwlp21flviiw187jih4y1s6lqn3j0f2s1h81rh1vvvzf"; depends=[DiceDesign MASS Rcpp]; }; @@ -10414,7 +10456,7 @@ in with self; { hhcartr = derive2 { name="hhcartr"; version="1.0.0"; sha256="104xy3ihpi031pyzifnpc0jfq68gsbc12gzv6hp1vjrgy0nqw5l1"; depends=[bookdown captioner checkmate DiagrammeR DiagrammeRsvg ggplot2 hash Matrix rsvg]; }; hhh4contacts = derive2 { name="hhh4contacts"; version="0.13.1"; sha256="1cqwn09iqgh6131cm4b5j0kx7k5vil0ak42v064g4maayj0yqy7p"; depends=[surveillance]; }; hhi = derive2 { name="hhi"; version="1.2.0"; sha256="1yl52c3nqdi8v60sr01l0vv8359803dm2i4c9ifazgj3h3a4h0yp"; depends=[ggplot2]; }; - hhsmm = derive2 { name="hhsmm"; version="0.2.1"; sha256="0m3jgqfa1mirwa9iy9xrq7d06f00mbfpx0im76m815bfd8rmv9kq"; depends=[CMAPSS MASS mice mvtnorm Rcpp Rdpack]; }; + hhsmm = derive2 { name="hhsmm"; version="0.2.2"; sha256="06r4pl96bd417mk2x9yn7gl84zybv9yz03xn7r1rqkgian9l110s"; depends=[CMAPSS MASS mice mvtnorm Rcpp Rdpack]; }; hht = derive2 { name="hht"; version="2.1.4"; sha256="0i4rjr507k555pvf7q6y6b3df56rjc6igrv8dk0mhyfws49jw9m9"; depends=[EMD fields spatstat spatstat_core spatstat_geom spatstat_linnet]; }; hiPOD = derive2 { name="hiPOD"; version="1.0"; sha256="1i15ickz2s0kffh99qq30pl5hsl0lbj0kp55jnbv4x72hndzhmla"; depends=[rgl]; }; hiddenf = derive2 { name="hiddenf"; version="2.0"; sha256="0shc1kfiq527mkc5i97zcm51hsvknnhjg7dyfvbfqyk145v6sz00"; depends=[]; }; @@ -10426,7 +10468,7 @@ in with self; { hierarchicalSets = derive2 { name="hierarchicalSets"; version="1.0.2"; sha256="0m5mnx1zmiscj0k1gnljr7fla4y1qhysi32a8q9jlah2q7grk7x9"; depends=[ggdendro ggplot2 gtable MASS Matrix RColorBrewer Rcpp scales]; }; hierband = derive2 { name="hierband"; version="1.0"; sha256="0d95hrgkd8b5sww3wsgs6v9zg9pm71ick8x8kj8d6vyib350h6yn"; depends=[]; }; hierbase = derive2 { name="hierbase"; version="0.1.2"; sha256="1rsyjlwa8x5n83ymwv7qm373k3y7jfp64g717xd1jmn9vrmm052b"; depends=[glmnet hdi SIHR]; }; - hierfstat = derive2 { name="hierfstat"; version="0.5-7"; sha256="0dp8k1z5a8gqnax99y1hwfvxilzf4n2i751zr0z6ihrzirsvb3m3"; depends=[ade4 adegenet gaston gtools]; }; + hierfstat = derive2 { name="hierfstat"; version="0.5-10"; sha256="1p4vlna185sa3b5xjbysiqxcj9aa5s7dmxy41hg79vlqdivf874r"; depends=[ade4 adegenet gaston gtools]; }; hiertest = derive2 { name="hiertest"; version="1.1"; sha256="17maf1w4vkqknxff3f00fzv136j3dbbigyzl4vq4sln9j27w10r3"; depends=[]; }; highD2pop = derive2 { name="highD2pop"; version="1.0"; sha256="1s4v6m2d3vzvxsgmjzczv1zj3kv3ygvv6gbkkbjwsdhkvc1rdmf0"; depends=[fastclime]; }; highDmean = derive2 { name="highDmean"; version="0.1.0"; sha256="0z81iw1nb8y4pvmhk8ay9pq4kvqxwxwv8q6p47hy8s2b465sfy1f"; depends=[]; }; @@ -10448,13 +10490,13 @@ in with self; { hilldiv = derive2 { name="hilldiv"; version="1.5.1"; sha256="1jp4xvrpqd575y2x0i73s0bq708bzi6gdhqgz85bia6d5kf05lq9"; depends=[ape data_table FSA geiger ggplot2 ggpubr qgraph RColorBrewer scales vegan]; }; hillmakeR = derive2 { name="hillmakeR"; version="0.2"; sha256="1baynibgn4xqmpsxna8irggxvdc484mq5nza00rwg58vh1bc7wzq"; depends=[]; }; hillshader = derive2 { name="hillshader"; version="0.1.0"; sha256="12phdpkjc4gyk9ri33x86dzxb03llhpqf43vin9ssfr23sbblnqh"; depends=[raster rayshader scales]; }; - himach = derive2 { name="himach"; version="0.2.1"; sha256="0znaxg11l7l5b40paiprg07264bna8wi5xsicbsk6h50pdxh4wx2"; depends=[cppRouting data_table dplyr geosphere ggplot2 lwgeom s2 sf sp tidyr]; }; + himach = derive2 { name="himach"; version="0.2.2"; sha256="0da5hbm31yza1bzi74llbah1w10xcbvgf7zvy6skv0riz18yrl5c"; depends=[cppRouting data_table dplyr geosphere ggplot2 lwgeom purrr s2 sf tidyr]; }; hindex = derive2 { name="hindex"; version="0.2.0"; sha256="01mcd2br33qqkfcyxl584f3l6kyb2cgzpd207p0mynzdaallgxgc"; depends=[foreach ggplot2 purrr]; }; hindexcalculator = derive2 { name="hindexcalculator"; version="1.0.0"; sha256="06b4dn629avmnyqxb0l39m00wz9cg9dddmm6qhgwgnzlxh14ifgk"; depends=[]; }; hint = derive2 { name="hint"; version="0.1-1"; sha256="1n18j2hcb1qynhsln10nzryi20l5aqhr7i1aanww10y5dz573zi3"; depends=[]; }; hiphop = derive2 { name="hiphop"; version="0.0.1"; sha256="0k071kxf04b95f3z5y2h9dhnqrvzwgyhi3q26ghn3s76c155f1k1"; depends=[]; }; hipread = derive2 { name="hipread"; version="0.2.2"; sha256="1y51yif2spl6brqjvb20k9r6xwkr5f6brv08qcl4g9xg561yngff"; depends=[BH R6 Rcpp rlang tibble]; }; - hisse = derive2 { name="hisse"; version="2.1.5"; sha256="0mbh72hy1fjxg2j7sqlxi88jxfqad1cbxpg7n337s1ahnshj0bs0"; depends=[ape corHMM data_table deSolve diversitree geiger GenSA igraph nloptr paleotree phangorn phytools plotrix subplex TreeSim]; }; + hisse = derive2 { name="hisse"; version="2.1.6"; sha256="08pz0ys0hk7kjfz18959v5kkw5xijnkp97l9fagwb8wjgsk5lbb7"; depends=[ape corHMM data_table deSolve diversitree geiger GenSA igraph nloptr paleotree phangorn phytools plotrix subplex TreeSim]; }; histmdl = derive2 { name="histmdl"; version="0.7-1"; sha256="0k6l3pfjzlgpxv55vy8dg4sl8zhh0460xcfszwp2k9sbzanwaamp"; depends=[]; }; histogram = derive2 { name="histogram"; version="0.0-25"; sha256="0yymc7fw4qkbigr8jiw2nzjyrw0ikkipz62pdn3bpz1f7nb7mi93"; depends=[]; }; historydata = derive2 { name="historydata"; version="0.1"; sha256="1h69x3iig542d43p9zm8x83p4dq48iwsw606j4fndnqhx99vzkw6"; depends=[]; }; @@ -10500,6 +10542,7 @@ in with self; { horserule = derive2 { name="horserule"; version="1.0.0"; sha256="0d348pn0ld7lr9lfl1z05905l9kl296j0xic1pib6r5l1c5600r9"; depends=[gbm ggplot2 inTrees MASS mvnfast randomForest RColorBrewer Rdpack]; }; horseshoe = derive2 { name="horseshoe"; version="0.2.0"; sha256="1qhkw6agkhpmgf27429c3kqqhbvpg61l0dvfxg7n564y2ha76r3c"; depends=[]; }; horseshoenlm = derive2 { name="horseshoenlm"; version="0.0.6"; sha256="1m3n12wgmb1wnxc40bzpna261das8hy47l7hmvhfbzhmp7v803v5"; depends=[msm survival]; }; + hospitals = derive2 { name="hospitals"; version="0.1.0"; sha256="03bg0fl1wpc7rxlzxgjdk48x8zsd7lv64dcs0fbg573wkhp02vim"; depends=[magrittr stringr tibble]; }; hot_deck = derive2 { name="hot.deck"; version="1.2"; sha256="1zdrbqkqh3sbc4pkrqgv230h6jm6fvf3wwpb3y6r9l3g8zh4j18r"; depends=[data_table MASS mice tidyr]; }; hotspot = derive2 { name="hotspot"; version="1.0"; sha256="0a4w5d6rg324hd06lfwr1hxf6bwr10n55s3ynz5bpkh9c61yik3n"; depends=[]; }; hotspots = derive2 { name="hotspots"; version="1.0.3"; sha256="12v88k3yz1bsxx9p5dx8y54ccqcglwknm2jr7ybygdj2yasjr5l0"; depends=[ineq lattice]; }; @@ -10628,7 +10671,7 @@ in with self; { iDOVE = derive2 { name="iDOVE"; version="1.3"; sha256="10xxg2mldbcjd6n1l2kblm7agw93ckx6waqwq9dm00l88kf06l3f"; depends=[knitr Rcpp RcppArmadillo]; }; iDynoR = derive2 { name="iDynoR"; version="1.0"; sha256="01702vl10191mbq2wby1m0y6h8i6y6ic4pa83d27cg3yccsrhziz"; depends=[vegan XML]; }; iFad = derive2 { name="iFad"; version="3.0"; sha256="0jrl9bayihp3wb4k5w9kc71qlsdxk7vl83ydfibx2bg79c4hf3cs"; depends=[coda MASS Rlab ROCR]; }; - iForecast = derive2 { name="iForecast"; version="1.0.3"; sha256="1mvgg96rd8clqhdg1n2a6vcx3y1rp64n5zlj1nrnpd6c938a0a1m"; depends=[caret magrittr zoo]; }; + iForecast = derive2 { name="iForecast"; version="1.0.4"; sha256="0yng5qrz1k4f1rn2wfhh8iik2zxzrzj8a0dka2gvlw2hwm2n4cgj"; depends=[caret magrittr zoo]; }; iGSEA = derive2 { name="iGSEA"; version="1.2"; sha256="1xlz8mbxqnrwyqj7jwma7vmvjlaccajbfxf3hi4wp5qs2pch8806"; depends=[]; }; iGasso = derive2 { name="iGasso"; version="1.4"; sha256="17xxqncl5xcphdqclghcazygcgibf8ijdf4kkl3ga11xf70sahj2"; depends=[CompQuadForm lattice]; }; iGraphMatch = derive2 { name="iGraphMatch"; version="2.0.0"; sha256="0xqf04wc5rm7x281pmnpz6a5ax26i9drgy90ixl4bchcx5ma0mr5"; depends=[clue igraph irlba Matrix Rcpp]; }; @@ -10734,19 +10777,19 @@ in with self; { igcop = derive2 { name="igcop"; version="1.0.1"; sha256="0jl107mdwbldi319qflqjzy8vk02sr4nihky8jl5kcgr6x55qh6z"; depends=[Rcpp rlang vctrs]; }; iglu = derive2 { name="iglu"; version="3.1.0"; sha256="1jq5y18gjxxvb1bhszs0xpklg7m9l9ig6ad1vjpll4m0xcln4hnl"; depends=[caTools dplyr ggplot2 ggpubr gridExtra gtable hms lubridate magrittr patchwork plotly scales shiny tibble tidyr zoo]; }; igoR = derive2 { name="igoR"; version="0.1.3"; sha256="0i1s53pyibxpqdv4269q9riqwr3yvy207hwljx2gbnaf4jqpf5hk"; depends=[]; }; - igraph = derive2 { name="igraph"; version="1.2.8"; sha256="01hvphaf5mx9xvwiazcw39kp6gc1lafqrbjwczy6f7hr145dn1pl"; depends=[magrittr Matrix pkgconfig]; }; + igraph = derive2 { name="igraph"; version="1.2.9"; sha256="1k1p5vpr3k02ix5z5z37lrcdwzbqigwvwmbjva3flbak4q7pkwxf"; depends=[magrittr Matrix pkgconfig]; }; igraphdata = derive2 { name="igraphdata"; version="1.0.1"; sha256="19w5npa4b8c054v94xlr7nmhhg2fhq4m8jbds86skp8zvipl4rkl"; depends=[]; }; igraphinshiny = derive2 { name="igraphinshiny"; version="0.1"; sha256="1ww5s4jfihzcx4k35lbhzsf54z720xh7b2p5alzk843m6rx77986"; depends=[igraph shiny]; }; igraphtosonia = derive2 { name="igraphtosonia"; version="1.0"; sha256="0vy9jnpjp68l8s0hi1l57j9p41c543h3iqv16pwl550f38zqp8j6"; depends=[igraph]; }; iheatmapr = derive2 { name="iheatmapr"; version="0.5.1"; sha256="1pwkwh7ljlpr6zyz6j8knpz3iw60xzkw8amc98x4pc2mw148jvzx"; depends=[fastcluster ggdendro htmlwidgets jsonlite knitr magrittr RColorBrewer scales]; }; - iheiddown = derive2 { name="iheiddown"; version="0.8.2"; sha256="0bb17872iiv6nnnc32r4g3pbgi5wlh1ishc66m454pav40mmsk9p"; depends=[bookdown covr crayon dplyr ggplot2 magrittr readr rlang rmarkdown roxygen2 rstudioapi servr tibble tidytext xaringan]; }; + iheiddown = derive2 { name="iheiddown"; version="0.8.6"; sha256="0w36w875fzxx8parjc6lb9nwvfjs0p2vv1pzd12cb160pgn9y7mc"; depends=[bib2df bookdown crayon dplyr fs gender ggplot2 pdftools purrr readr remotes rlang rmarkdown rstudioapi servr stringr tibble tidytext usethis xaringan]; }; ihpdr = derive2 { name="ihpdr"; version="1.2.1"; sha256="1qa9ndb5aqbmlqbl0ivh10ddah2rbhsc6928dml20fjgz7lggdww"; depends=[curl dplyr httr lubridate magrittr purrr readxl rlang rvest tidyr xml2]; }; iilasso = derive2 { name="iilasso"; version="0.0.2"; sha256="043m1n5840459zsknkb54801apb0a2cqfprncmj2wp235rbqj832"; depends=[BH Matrix Rcpp]; }; ijtiff = derive2 { name="ijtiff"; version="2.2.7"; sha256="187ykflj7b51j2jziqb45bcv9319w67g179505m74kjka897rir4"; depends=[checkmate cli dplyr fs magrittr purrr readr rlang strex stringr withr zeallot]; }; ilc = derive2 { name="ilc"; version="1.0"; sha256="0hs0nxv7cd300mfxscgvcjag9f2igispcskfknb7sn7p8qvwr5ki"; depends=[date demography forecast rainbow survival]; }; imabc = derive2 { name="imabc"; version="1.0.0"; sha256="1p420jlvqqcqdjqp7y4mcjkzimw3qiygph5yrvmm75znax3fkg4z"; depends=[data_table foreach lhs MASS truncnorm]; }; image_CannyEdges = derive2 { name="image.CannyEdges"; version="0.1.0"; sha256="0c8pvk91xyys6d2i03yy88kylb3jli5jkpq2s069n7p0yl3z7rr1"; depends=[Rcpp]; }; - image_ContourDetector = derive2 { name="image.ContourDetector"; version="0.1.0"; sha256="1z3713paqw86yq45sq1b4gi3nq3y21wcg3pxh7vsciqs669lpv1q"; depends=[Rcpp sp]; }; + image_ContourDetector = derive2 { name="image.ContourDetector"; version="0.1.1"; sha256="0h9nq6k99rfmldw1c00k2anlpbjbpm26pp1d7jg2wz334dvlvlij"; depends=[Rcpp sp]; }; image_CornerDetectionF9 = derive2 { name="image.CornerDetectionF9"; version="0.1.0"; sha256="04qy2yvgjmgb8r3piw6v5g97abljqv1nw7vn2wvn1npkq9lzj94x"; depends=[Rcpp]; }; image_CornerDetectionHarris = derive2 { name="image.CornerDetectionHarris"; version="0.1.1"; sha256="150qz9wfpa33914x1am2ifzm0k2bdkmgk1qypvgxy958ginlaxsg"; depends=[Rcpp]; }; image_LineSegmentDetector = derive2 { name="image.LineSegmentDetector"; version="0.1.0"; sha256="1mx6vkmm9miwqdd5vil44if0dikzn5cy3kxvb3vp0kwfm8k36ib5"; depends=[Rcpp sp]; }; @@ -10758,7 +10801,7 @@ in with self; { imageData = derive2 { name="imageData"; version="0.1-61"; sha256="0bavyd8njfjd0l8dcsm6gklgc81kykl275w2gpvb5cxrhb9yp32n"; depends=[dae GGally ggplot2 Hmisc RColorBrewer readxl reshape]; }; imagefluency = derive2 { name="imagefluency"; version="0.2.3"; sha256="0f4kizxc86q6pgx5dbp14y6866b1ldyf7zgpfikd2iqhvxbs7qwa"; depends=[magick OpenImageR pracma R_utils readbitmap]; }; imagefx = derive2 { name="imagefx"; version="0.4.1"; sha256="1mxd33y8zbq8kig6m6xihb5w8wrjppgmpyjspvaxjwk7si9a09k1"; depends=[moments signal]; }; - imager = derive2 { name="imager"; version="0.42.10"; sha256="1vmfmmawbk8sgyba87igaxpwb926nb1ji8a08ad3dqfj7aq9x4q1"; depends=[downloader igraph jpeg magrittr png purrr Rcpp readbitmap stringr]; }; + imager = derive2 { name="imager"; version="0.42.11"; sha256="1a1jhmgrpv1d0fk14axj88qvxgb25bqnj65d60g1k985ipzvgy27"; depends=[downloader igraph jpeg magrittr png purrr Rcpp readbitmap stringr]; }; imagerExtra = derive2 { name="imagerExtra"; version="1.3.2"; sha256="1f6mxfn7am4ph9acbbx53r4bk4vsm73p7arh8rvrsic9pgma3gqf"; depends=[fftwtools imager magrittr Rcpp]; }; imageviewer = derive2 { name="imageviewer"; version="0.1.0"; sha256="1rsrwy5v0gnsmbay1zqijhvll2l1bs844m52w65588j9nlx4fci9"; depends=[htmlwidgets]; }; imagine = derive2 { name="imagine"; version="1.5.3"; sha256="1ss0gm769s8cmma3hnah15vmc2c5wxn0l3s4vas7jbvkwi62am6h"; depends=[Rcpp]; }; @@ -10775,9 +10818,10 @@ in with self; { immer = derive2 { name="immer"; version="1.1-35"; sha256="1nmf9wxxyq3p8b5kikpsr8b0v4s84zjpahg1rxvcrhc8blg26hjq"; depends=[CDM coda MASS psychotools Rcpp RcppArmadillo sirt TAM]; }; immunarch = derive2 { name="immunarch"; version="0.6.7"; sha256="1dv983cnjyzwsfn7p174ab6rffpd1h24zy5w78mqapkyr0m95d98"; depends=[airr circlize data_table dbplyr dplyr dtplyr factoextra fpc ggalluvial ggplot2 ggpubr ggrepel ggseqlogo jsonlite magrittr MASS patchwork pheatmap plyr purrr Rcpp readr readxl reshape2 rlang Rtsne scales shiny shinythemes stringr tibble tidyselect UpSetR]; }; immuneSIM = derive2 { name="immuneSIM"; version="0.8.7"; sha256="0brj12xnkzmn3n91vb39fq3q68wmzmwx9l38dl38yypp0l8pknjl"; depends=[Biostrings data_table ggplot2 ggthemes igraph Metrics plyr poweRlaw RColorBrewer repmis reshape2 stringdist stringr]; }; + imola = derive2 { name="imola"; version="0.3.2"; sha256="0v41xprzqhhj0463g9176jc3zr7g6mjrcgs8vrcn3g5lmg6c9z7z"; depends=[glue htmltools magrittr shiny stringi yaml]; }; imp4p = derive2 { name="imp4p"; version="1.2"; sha256="1ld8bjjrlij9m7xns7izibag9mndrfh21xgq1w7g3bh5ag9p9fs0"; depends=[Iso missForest missMDA norm Rcpp truncnorm]; }; impactflu = derive2 { name="impactflu"; version="0.1.0"; sha256="0wpaq2q61g6hl9fffs5cjbzdz1qc8dxsbknfs0iarwkn08460bn5"; depends=[dplyr glue lubridate magrittr Rcpp rlang tibble]; }; - impactr = derive2 { name="impactr"; version="0.2.0"; sha256="01xgc865nx6sm4p9ldrhdz2q0m140krhxcd5v20nyr4n7qcz612y"; depends=[glue lubridate lvmisc pillar pracma purrr Rcpp rlang signal stringr tibble toOrdinal vroom]; }; + impactr = derive2 { name="impactr"; version="0.3.0"; sha256="1a1psp1jjnczza0skws75rn80xn5krmpbdfq75cdjfg03vqc95kx"; depends=[glue lubridate lvmisc pillar pracma purrr Rcpp rlang signal stringr tibble toOrdinal vroom]; }; impimp = derive2 { name="impimp"; version="0.3.1"; sha256="0xkxph4f1rcpkryx9v339bfbsnq3xwdj1flb4j2dgh99apj126sq"; depends=[]; }; implicitMeasures = derive2 { name="implicitMeasures"; version="0.2.0"; sha256="0w0dwnzfhw5v5j7q3zpfsca4ydmq7b9fzspvyf9sibyh587isb9c"; depends=[ggplot2 stringr tidyr xtable]; }; implied = derive2 { name="implied"; version="0.4.0"; sha256="00wv05pb59p86ddfwha7ilfss36si8yljnmkmayiqcazn32ylzg8"; depends=[]; }; @@ -10850,6 +10894,7 @@ in with self; { inline = derive2 { name="inline"; version="0.3.19"; sha256="1mcr9hgq6kkq03n7pkcccxa7vg8jma0q7lfxc5vvkc6snydk1s8f"; depends=[]; }; inlinedocs = derive2 { name="inlinedocs"; version="2019.12.5"; sha256="11d8cnrzgq95w7hn234rcwrr1mmrv63f69807pnzxizxbgnp7wz3"; depends=[]; }; inlmisc = derive2 { name="inlmisc"; version="0.5.2"; sha256="1jg92fy9dg9rv0sdzzcc7vylkx6z3l0b2q7rba63dpkdb1vqrwls"; depends=[checkmate data_table GA htmltools htmlwidgets igraph knitr leaflet raster rgdal rgeos rmarkdown scales sp tinytex webshot wordcloud2 xtable yaml]; }; + innsight = derive2 { name="innsight"; version="0.1.0"; sha256="1df1byv5jnv895b6aywvkalxx5clw6p6yl0lpihf7qnzsgm8wz49"; depends=[checkmate ggplot2 R6 torch]; }; inops = derive2 { name="inops"; version="0.0.1"; sha256="1y402a9r542hpwd1nfdc07mbgnf9alpnykl9di1v8fy0qly8s0an"; depends=[]; }; inpdfr = derive2 { name="inpdfr"; version="0.1.11"; sha256="1wnz73ggc7xcgynvdlvgz26qkfjmxxy0xg8gkf1far5346g4qd9y"; depends=[ca cluster entropart metacom R_devices RColorBrewer SnowballC stringi tm wordcloud]; }; inplace = derive2 { name="inplace"; version="0.1.2"; sha256="06jb8xzjqywdww8j2i59c8663dfbrhnvj0lh3xm73j39sig6vh7l"; depends=[Rcpp]; }; @@ -10977,7 +11022,7 @@ in with self; { isdals = derive2 { name="isdals"; version="2.0-4"; sha256="15p432fskdz2r8523cw122mfhvrq8vdsdsrd0kz9yfin4b5z3zfh"; depends=[]; }; isdparser = derive2 { name="isdparser"; version="0.4.0"; sha256="05xkffmiiyhas5hzdjdylbrvh6fjc2fjh7s00iwjxkp4ba7rwq3g"; depends=[data_table lubridate tibble]; }; isingLenzMC = derive2 { name="isingLenzMC"; version="0.2.5"; sha256="1pd1s3a1rv7vlxd5db1pgwdjps8w5im4zz2h3qzal9cwbis0hb51"; depends=[]; }; - islasso = derive2 { name="islasso"; version="1.4.0"; sha256="1h5425qb6gm3an944rpb5g8bsmsznrqyp37w0as0x22wvp7l0jhr"; depends=[glmnet Matrix]; }; + islasso = derive2 { name="islasso"; version="1.4.1"; sha256="05wgjwqi6529ws0mqiqhairqs2ya62s2xzgb0g06bi772syxf9qw"; depends=[glmnet Matrix]; }; ismev = derive2 { name="ismev"; version="1.42"; sha256="19giigxwf62cdkf7mglsca649n2ignb9bxyg9zl7im1vm3ngnmqd"; depends=[mgcv]; }; isni = derive2 { name="isni"; version="1.3"; sha256="02a4vbhk26w796kxsyzqfp3bqxn64byfd5x5qma09lmdaxzmm71m"; depends=[Formula lme4 matrixcalc mvtnorm nlme nnet]; }; isnullptr = derive2 { name="isnullptr"; version="1.0.1"; sha256="0kwjxq59n3qncdw63vsdvz7v5mzbl5lmckdfgiiw35pzmahnxzh9"; depends=[]; }; @@ -10988,13 +11033,13 @@ in with self; { isobxr = derive2 { name="isobxr"; version="1.0.1"; sha256="18kjymp7lkdnmzsl9cdgqk6x1njqwgp9rsf7z3gi683yfjli7p3g"; depends=[data_table deSolve dplyr DT fs ggplot2 ggrepel metR qgraph R_utils readxl rlang shiny shinyFiles shinyjs shinythemes stringr writexl]; }; isocalcR = derive2 { name="isocalcR"; version="0.0.2"; sha256="0ryg80jfakday1flrqv801rqi29v85qv0yrw3hijrh3rvj8pj7pa"; depends=[dplyr]; }; isocat = derive2 { name="isocat"; version="0.2.6"; sha256="1d6pi2l1lfi4226890lsfa02v0df1mc8gi214icsbk4fid4jygsx"; depends=[foreach magrittr plyr raster sp]; }; - isocir = derive2 { name="isocir"; version="2.0-6"; sha256="0dkxdx2g1c579q97r45shws2gylkwqlvrhmc14ddmzi45xhxlql6"; depends=[circular combinat TSP]; }; + isocir = derive2 { name="isocir"; version="2.0-7"; sha256="09cy79zxxj96a3q0izm83yrsmfxkpnqg7w1mcibfglgjg83a8lz3"; depends=[circular combinat TSP]; }; isodistrreg = derive2 { name="isodistrreg"; version="0.1.0"; sha256="0na7jipwzr16afvz2l6wxh62mv0mrq1ma1qwxnys83zhr0dca099"; depends=[Matrix osqp Rcpp]; }; isogeochem = derive2 { name="isogeochem"; version="1.0.9"; sha256="1x7wi04r68564yavvnj4d0ir48avccwdp0aw4d8cgg8r8f5p5fjj"; depends=[]; }; isokernel = derive2 { name="isokernel"; version="0.1.0"; sha256="04mrbq2822yhcq4q82xwm61a38zsk6w55jgjkp0xnardpv8a39pb"; depends=[Matrix RANN]; }; isopam = derive2 { name="isopam"; version="0.9-13"; sha256="0y1yy0922kq5jxyc40gz8sk9vlzwfkfg5swmc6lk4007g9mgc8fm"; depends=[cluster vegan]; }; isopat = derive2 { name="isopat"; version="1.0"; sha256="0fznvgycyd35dh7pbq1xhp667gsficlmycn5pcrqcbs89069xr1s"; depends=[]; }; - isoreader = derive2 { name="isoreader"; version="1.3.1"; sha256="15141sbq2wjdv6ykbdxc4p4qjl7rhfwws6km7aa3z81flynv5vgg"; depends=[dplyr future glue lubridate magrittr progress purrr R_utils readr rlang stringr tibble tidyr tidyselect UNF vctrs]; }; + isoreader = derive2 { name="isoreader"; version="1.3.2"; sha256="0d0h57imbis7g58gdn7j0pwmc1s71b8ymqwqkg3byagd0yhrxf0w"; depends=[dplyr future glue lubridate magrittr progress purrr R_utils readr rlang stringr tibble tidyr tidyselect UNF vctrs]; }; isotone = derive2 { name="isotone"; version="1.1-0"; sha256="0alk0cma5h3yn4w2nqcahprijsm89b0gby9najbngzi5vnxr6nvn"; depends=[nnls]; }; isotonic_pen = derive2 { name="isotonic.pen"; version="1.0"; sha256="1lgw15df08f4dhrjjfr0jqkcvxwad92kflj2px526pcxwkj7cj3i"; depends=[coneproj Matrix]; }; isotracer = derive2 { name="isotracer"; version="1.0.4"; sha256="1zqn7clqrpy112kvi31f4qpv3y5j07jvngg143dryrn3j2j81yav"; depends=[BH coda data_table dplyr latex2exp magrittr pillar purrr Rcpp RcppEigen rlang rstan rstantools StanHeaders tibble tidyr tidyselect]; }; @@ -11004,7 +11049,7 @@ in with self; { istacr = derive2 { name="istacr"; version="0.1.3"; sha256="14nhd3v8l827mb1fxfhsxklzxbf4316ijp2qkc99qp7ydmxbk0rd"; depends=[curl jsonlite]; }; isva = derive2 { name="isva"; version="1.9"; sha256="05qx9q0kg4ma23v4abhihw0vz017nq6hv2jzsiqx4d20ngh1dl4z"; depends=[fastICA JADE qvalue]; }; italy = derive2 { name="italy"; version="0.1.0"; sha256="0is90xp6980ja12jzi3816jq1y90ifcw6cvfmybb7invj6rr1cks"; depends=[]; }; - itan = derive2 { name="itan"; version="1.0"; sha256="082vh5gvh8hgyhk8nswll16ldhnp0pfpxnz1yx05zsc4nzvm92cf"; depends=[ggplot2 reshape]; }; + itan = derive2 { name="itan"; version="2.0.1"; sha256="0bvdi18dmjvxf5wrvipsf1q2bsmiwh2pb57kyrb2zlkfz3hz53ww"; depends=[ggplot2 reshape]; }; itcSegment = derive2 { name="itcSegment"; version="0.8"; sha256="032wj34313m3wigdfalq356srdzg0cvnvxnaxwxws6bc44r78izf"; depends=[maptools raster rgeos sp]; }; itdr = derive2 { name="itdr"; version="1.0"; sha256="1113lr17m370ipg3sxghqvk4fj36bgqs5bfvnli8rss2ffyzfin0"; depends=[MASS]; }; iteRates = derive2 { name="iteRates"; version="3.1"; sha256="1dycmlm3vldc60wz2jjdfbla14383911zfahgal5mx8whxwq95c5"; depends=[ape apTreeshape geiger gtools MASS partitions VGAM]; }; @@ -11020,7 +11065,6 @@ in with self; { iva = derive2 { name="iva"; version="0.1.0"; sha256="0dchb263ygilxapwsw2gpl18z12wcjsz8zz5fg7h068hmcysa88g"; depends=[Formula ucminf]; }; ivdesc = derive2 { name="ivdesc"; version="1.1.0"; sha256="06jqnh6i8szygc00d6ys0wwvh9br33zmwc430q2ann1qmrkaxxj5"; depends=[knitr purrr rsample]; }; ivdesign = derive2 { name="ivdesign"; version="0.1.0"; sha256="02v2cnljz3gk7mb8q3p1i54rj6l02r4pirznnrshy092zvrvr26m"; depends=[]; }; - ivdoctr = derive2 { name="ivdoctr"; version="1.0.0"; sha256="18pca08cww4x13j3ks0mr84c3jkigf09s7wrh5y8pc11ypyxbgp1"; depends=[AER coda data_table MASS Rcpp RcppArmadillo rgl sandwich]; }; ivfixed = derive2 { name="ivfixed"; version="1.0"; sha256="0a26zrkvz0ffq4zxdx5vhr1nvsi9c15s6gvc1zy2pddjz31x2xi5"; depends=[Formula]; }; ivitr = derive2 { name="ivitr"; version="0.1.0"; sha256="0fc5svmkxv0s20ipwbvkvmmh1w5gb1g6va496fa9qbf99wifnmrx"; depends=[dplyr nnet randomForest rlang]; }; ivmodel = derive2 { name="ivmodel"; version="1.9.0"; sha256="1yb2k6ciwcfiylnlb9ncz30mz10f73rxqrxk8s099ypr5k6myajk"; depends=[Formula ggplot2 Matrix reshape2]; }; @@ -11050,6 +11094,8 @@ in with self; { janeaustenr = derive2 { name="janeaustenr"; version="0.1.5"; sha256="1wyn4qc28a3sval8shmyi2d7s4nl3jh96s8pzq871brxcmrncbwr"; depends=[]; }; janitor = derive2 { name="janitor"; version="2.1.0"; sha256="09nqm957m2f54y2l30619b58x4i7gxwvr2lwg5kly5xy1ya1a1nn"; depends=[dplyr lifecycle lubridate magrittr purrr rlang snakecase stringi stringr tidyr tidyselect]; }; jaod = derive2 { name="jaod"; version="0.3.0"; sha256="071j3xqk7gzsic1sk8v0pwmqv6pav0nj9vvbskss3l1gczy80dfr"; depends=[crul jsonlite tibble]; }; + japanmesh = derive2 { name="japanmesh"; version="0.1.0"; sha256="0hnl9x9vmmjsfm209wvvx1cs5f4yc5if4ldx09dlk14wfvhdhn39"; depends=[dplyr geosphere magrittr purrr rlang sf stringr tibble tidyr units vctrs]; }; + japanstat = derive2 { name="japanstat"; version="0.1.0"; sha256="0rd2q23s9r075ns47ccmr8fjvdcv2jncjs9w1c668s597cwkf6lb"; depends=[cli dplyr httr pillar progress purrr rlang stringi stringr tibble tidyr vctrs]; }; jarbes = derive2 { name="jarbes"; version="1.7.2"; sha256="0qjnx0m65f6a8r6y5mwplaq518lrsf73k8zbf728v857nbjlhf2l"; depends=[ggExtra ggplot2 gridExtra MASS mcmcplots R2jags rjags]; }; jcext = derive2 { name="jcext"; version="0.1.1"; sha256="02zppiyq3gy551zi1g00gam1w4y1wgzn5zi9wrcz8yw915dla0ix"; depends=[ggplot2 maps RColorBrewer rworldmap sp stringr]; }; jcolors = derive2 { name="jcolors"; version="0.0.4"; sha256="18dmjcrci0z1xy2kglrarzm0idr9g3nhbbw7f1ijls3i0piqdri6"; depends=[ggplot2 scales]; }; @@ -11059,7 +11105,7 @@ in with self; { jenga = derive2 { name="jenga"; version="1.0.0"; sha256="1lnqvq979yw3im2cll2bynqafgcs81ndqkzi37smys4fnlb7kyi6"; depends=[abind ggplot2 imputeTS lubridate modeest moments narray philentropy purrr readr scales stringr tictoc]; }; jetpack = derive2 { name="jetpack"; version="0.5.0"; sha256="17dixhg5nwv2fhp7gvcc927kfxzj07x288g6ywbba1mphk9j5nam"; depends=[desc docopt remotes renv]; }; jetset = derive2 { name="jetset"; version="3.4.0"; sha256="0c99h5npsv2gf5d59s4qhkaqmjhbwa3prcykk24wzhnpfq6y6xhp"; depends=[AnnotationDbi org_Hs_eg_db]; }; - jfa = derive2 { name="jfa"; version="0.6.0"; sha256="1kcwjdzz31firrdh5kz5h1wyq9faf5k4y3jg5d7gjw0rzzhfw662"; depends=[extraDistr]; }; + jfa = derive2 { name="jfa"; version="0.6.1"; sha256="1f0y13kh3mi5x50wsw5yp88l6d4874nrp0fdpi6nashcffznk8zg"; depends=[extraDistr]; }; jgcricolors = derive2 { name="jgcricolors"; version="1.0.0"; sha256="1lg6yzqly5y2cf396b6rvfqplnfyz9v9ay2g4q9m110mng5ln96l"; depends=[ggplot2 knitr markdown RColorBrewer stringr]; }; jiebaR = derive2 { name="jiebaR"; version="0.11"; sha256="08v64xwr9jp4vh88x7y935khh4cmj8rwsjaxfd2c67n0445qppmd"; depends=[jiebaRD Rcpp]; }; jiebaRD = derive2 { name="jiebaRD"; version="0.1"; sha256="1wadpcdca4pm56r8q22y4axmqdbb2dazsh2vlhjy73rpymqfcph4"; depends=[]; }; @@ -11076,7 +11122,7 @@ in with self; { jmv = derive2 { name="jmv"; version="2.0"; sha256="0fhjp3ih46r34yiqxbd2kpwp88nhyrqfwh729l14sj3aw142nlbi"; depends=[afex BayesFactor car emmeans GGally ggplot2 ggridges GPArotation jmvcore lavaan MASS multcomp mvnormtest nnet PMCMR psych R6 ROCR vcd vcdExtra]; }; jmvReadWrite = derive2 { name="jmvReadWrite"; version="0.2.2"; sha256="1i9gl79pdr73mkzpqbainsrwa942nvmzmflcy7mcp8lli7xbcpsm"; depends=[rjson]; }; jmvconnect = derive2 { name="jmvconnect"; version="2.0.0"; sha256="1q412v8z0wbiqab4czabg75w976591lh59gbbhqz1avkas3jjhf2"; depends=[BH evaluate httr jmvcore rappdirs Rcpp]; }; - jmvcore = derive2 { name="jmvcore"; version="1.8"; sha256="00kcb581bs3r291wq365d53lvjqgjpp5krpi3zqbxvdb12d5xdqc"; depends=[base64enc jsonlite R6 rlang stringi]; }; + jmvcore = derive2 { name="jmvcore"; version="2.2"; sha256="009hkg378vfkzxbz323m7zfmfyh0j742xf4381qb6s81v3wmg4dq"; depends=[base64enc jsonlite R6 rlang stringi]; }; job = derive2 { name="job"; version="0.3.0"; sha256="0d7pw3q5lqlgmav1vx63y8l6gdav96656bg378wj001rx5gx052h"; depends=[digest rstudioapi]; }; jocre = derive2 { name="jocre"; version="0.3.3"; sha256="1i9n3r16pq6r4sy3fc1rxpil5ws8v2is0xdxafinvwr1hzkv1gz6"; depends=[boot KernSmooth plyr TSP]; }; joinXL = derive2 { name="joinXL"; version="1.0.1"; sha256="1l76bckjz5r1kdsh0s10i0gpca12rkfkp14346fn7avdcw73v23i"; depends=[data_table openxlsx R_utils rChoiceDialogs Rcpp readxl rJava timeDate timeSeries]; }; @@ -11183,13 +11229,13 @@ in with self; { keyholder = derive2 { name="keyholder"; version="0.1.5"; sha256="0sr0rcchvwflqf2xj9j8j35ng52ichgvp1ix57v4ah91dlpj9i5s"; depends=[dplyr rlang tibble]; }; keyplayer = derive2 { name="keyplayer"; version="1.0.3"; sha256="0j4n46r9ivkbzqz8g22dq2bpmx7bs05yb5qp27p9jnfh5x19v2ds"; depends=[igraph matpow sna]; }; keypress = derive2 { name="keypress"; version="1.2.0"; sha256="19l33519f726i3q20y34v1aavrn4fpj3zn5caij3l9q2asw2kqk2"; depends=[]; }; - keyring = derive2 { name="keyring"; version="1.2.0"; sha256="1rqz29ycsmfqixhnzhhfd89j9ivnmp7x2z3vxdla622zmakbcy4c"; depends=[askpass assertthat filelock openssl R6 rappdirs sodium yaml]; }; + keyring = derive2 { name="keyring"; version="1.3.0"; sha256="1j8l6nmh4dr70kwybiais8yh687fdwrj134xynq68igw1b1rm8ga"; depends=[askpass assertthat filelock openssl R6 rappdirs sodium yaml]; }; keyringr = derive2 { name="keyringr"; version="0.4.0"; sha256="04f0z6mqj75l5qhiab0zvjsvz3jz1bp6dfazkpgihjmls5k11dnh"; depends=[stringr]; }; keys = derive2 { name="keys"; version="0.1.1"; sha256="0jq7c70hyxpaxkrciy2jz4bf2mdcbcnmpjniwqffk1lkaxr0ni9b"; depends=[htmltools jsonlite shiny]; }; kfda = derive2 { name="kfda"; version="1.0.0"; sha256="0861hzry55gj8ykdd8cwil1wb7234pkmipp4v1749fpmzggq1xgi"; depends=[kernlab MASS]; }; kfigr = derive2 { name="kfigr"; version="1.2.1"; sha256="0kys4j2n2n1v918v877798m34q431fpz0p0s6gxnfqnn26z2hy14"; depends=[knitr]; }; kgc = derive2 { name="kgc"; version="1.0.0.2"; sha256="14zbcimnglh5jj07dcaxp1dfjaz8syswy29nf8z39qmslv1hg9kk"; depends=[plyr shiny shinythemes]; }; - kgrams = derive2 { name="kgrams"; version="0.1.0"; sha256="1p4nbpxv8pklk6i164f6psdldqv8dw6840jjhmapmlw6gqjqy1fh"; depends=[Rcpp RcppProgress Rdpack rlang]; }; + kgrams = derive2 { name="kgrams"; version="0.1.2"; sha256="0m1cw55lr0bl83p379wh3103d1rw9933lvf457kvxy56r1164l2h"; depends=[Rcpp RcppProgress Rdpack rlang]; }; kgschart = derive2 { name="kgschart"; version="1.3.5"; sha256="1gdsrmnv8z99cldvig7grlq8gsbv3wpx7zdamw85lz563n4ln94d"; depends=[abind deepnet ggplot2 gridExtra magrittr matrixStats nnet png shiny stringr]; }; khroma = derive2 { name="khroma"; version="1.7.0"; sha256="146kc7mazzznaih9sjqf7cylpxq08lnhijmrapqyhk00f3i6h52n"; depends=[]; }; kibior = derive2 { name="kibior"; version="0.1.1"; sha256="1acrdlqbklhhd69i1gija8r3nsdgcnfvk5ngz7b2ndy2f58w5ynf"; depends=[Biostrings data_table dplyr elastic jsonlite magrittr purrr R6 rio Rsamtools rtracklayer stringr tibble tidyr]; }; @@ -11205,14 +11251,14 @@ in with self; { kirby21_fmri = derive2 { name="kirby21.fmri"; version="1.7.0"; sha256="1z2l6bn53mwkll9ki4169lqlz6wcfp29xzdrqyw606j2xrs4wc22"; depends=[kirby21_base]; }; kirby21_t1 = derive2 { name="kirby21.t1"; version="1.7.0"; sha256="0bv8rrk9jh02h3gill1g2w246j4zv98cjchz7i2c092lvqps8szs"; depends=[kirby21_base]; }; kissmig = derive2 { name="kissmig"; version="1.0-3"; sha256="1pi1x3gdbqrhr1km1hqj15k8wyrgs697fnxgjgxga1irbn8bi482"; depends=[raster]; }; - kit = derive2 { name="kit"; version="0.0.9"; sha256="01n4y5n5jzi41wd6ddgswplnc7kjks3449v4da5kizg3ygb14v4n"; depends=[]; }; + kit = derive2 { name="kit"; version="0.0.10"; sha256="05gsvz95cfmw5pkbdcd2b9pqfjpnq78jhv722hl1x8lx7ivw2mla"; depends=[]; }; kitagawa = derive2 { name="kitagawa"; version="3.1.0"; sha256="190xi88zc3vybpyawayh8m78sgcn951n3axmc2fc67sic458r02s"; depends=[Bessel kelvin psd]; }; kiwisR = derive2 { name="kiwisR"; version="0.2.0"; sha256="14fzf72swy221jcbiplss9dh7g03idrpbbyvbxp4bcqpxwr6hbsa"; depends=[dplyr httr jsonlite lubridate purrr tibble]; }; kknn = derive2 { name="kknn"; version="1.3.1"; sha256="1nzkg3dxaiqp87p56wm895qx5xn86hv5hjr73qvl1yiaxiq0x112"; depends=[igraph Matrix]; }; klaR = derive2 { name="klaR"; version="0.6-15"; sha256="1bhgkq6spjawy5lsh663rnby4fzrx4k2qwqp4ci4p9pq8g35pzjv"; depends=[combinat MASS questionr]; }; klassR = derive2 { name="klassR"; version="0.1.7"; sha256="1y2jbpb7yyah62a6ii61xllskz5h4jcnw7sxmwzfnw6jpnd5m3gr"; depends=[httr jsonlite tm]; }; klausuR = derive2 { name="klausuR"; version="0.12-10"; sha256="12fjs4dnwaki8sz718xgsg8qrqhsgf87cs0bylf0p3f5k8hrmk4b"; depends=[polycor psychometric xtable]; }; - kldtools = derive2 { name="kldtools"; version="1.1"; sha256="1nip4vn7bfacl567f79nvafzgc6bzv48z5p02l679hmjf5l9xl9s"; depends=[]; }; + kldtools = derive2 { name="kldtools"; version="1.2"; sha256="1r6j6ddylzxsfmymnf8hp7sm8c2ckr8xrdz75xlkgp4fgay106r2"; depends=[]; }; klexdatr = derive2 { name="klexdatr"; version="0.1.2"; sha256="141xs03sb0ixhjpr388fwf5h124mqkbj0k1xqw0whdhrm5051qsz"; depends=[sf]; }; klic = derive2 { name="klic"; version="1.0.4"; sha256="1ggsdq8xcg6hi12rq356myhngx3j475gpwlvpynm1581r4z0lkbk"; depends=[cluster coca Matrix pheatmap RColorBrewer]; }; klsh = derive2 { name="klsh"; version="0.1.0"; sha256="1r354fd5da6mp7v3048ii09hnghhfwdg6pvmx2ib0cr88ql431sy"; depends=[blink plyr Rcpp SnowballC stringi]; }; @@ -11235,6 +11281,7 @@ in with self; { knn_covertree = derive2 { name="knn.covertree"; version="1.0"; sha256="0msfcmwydws7q7m5jdb0dxab0nkbl7mq5llg6v3r4qrnlvrdggvz"; depends=[Matrix Rcpp RcppEigen]; }; knnIndep = derive2 { name="knnIndep"; version="2.0"; sha256="1fwkldgs2994svf3sj90pwsfx6r22cwwa22b30hdmd24l8v9kzn7"; depends=[]; }; knnp = derive2 { name="knnp"; version="2.0.0"; sha256="0qgq8la3zndlb1wwqv9b2kw52y9ns36pi4ds68pkm81bhzq5nqis"; depends=[doParallel foreach forecast parallelDist plyr]; }; + knnwtsim = derive2 { name="knnwtsim"; version="0.1.0"; sha256="0b902w012lkj18piyfn8mkjh45fdvw19v3wpsw5ng9gk4j7g4mwj"; depends=[]; }; knockoff = derive2 { name="knockoff"; version="0.3.3"; sha256="1nswpchpk1ccvhlgz1h3ka3c65mjfrrykfgv824fyncmfxaz8lmw"; depends=[corpcor glmnet gtools Matrix Rdsdp RSpectra]; }; knotR = derive2 { name="knotR"; version="1.0-2"; sha256="0kd1b9wibpwyaanz9ny61qgfvcg4d3rzpy05sfshlpp0b1y8d3xj"; depends=[]; }; kntnr = derive2 { name="kntnr"; version="0.4.4"; sha256="1af5qhj82dixf1qcbz3sfj52pzgy8gnafzifwxnhrp7vpn4rnv6m"; depends=[base64enc dplyr httr jsonlite lubridate purrr rlang rstudioapi stringr tibble tidyr]; }; @@ -11307,10 +11354,11 @@ in with self; { lamW = derive2 { name="lamW"; version="2.1.0"; sha256="09f93gf9q3bxa2a2g5kgzc69s6izn8z243160280vbqzsy55m28q"; depends=[Rcpp RcppParallel]; }; lambda_r = derive2 { name="lambda.r"; version="1.2.4"; sha256="1mh1g0gsd58gng0hb29vww2yqb2jfs07kba5kxnnqck5j3izwlnj"; depends=[formatR]; }; lambdaTS = derive2 { name="lambdaTS"; version="1.0.0"; sha256="0bd1kvvw573vagx7k2nylawgaf826bvqms4ar56cx54hys0blmm5"; depends=[abind bestNormalize bizdays fANCOVA ggplot2 imputeTS lubridate modeest narray purrr readr scales stringr tictoc torch]; }; + lambdr = derive2 { name="lambdr"; version="1.1.0"; sha256="02piqnw1n444sa396bbmplf3br7bh70qkn4dwvkzxj558ddv9l83"; depends=[httr jsonlite logger]; }; lamme = derive2 { name="lamme"; version="0.0.1"; sha256="1x9jl79iqikpjixajly1k8w2nkzskns2m0v242giknl0ikw298h1"; depends=[]; }; - landest = derive2 { name="landest"; version="1.0"; sha256="1lp5sfqk0n7i23fmwjgzsabml1fsji1h9xq5khxzaz1bzqv1s08g"; depends=[survival]; }; + landest = derive2 { name="landest"; version="1.1"; sha256="1gcjxn9g3zq37glb92xgv2r9w5yq6hwsmgfmv2ijr66lla0qxsf4"; depends=[survival]; }; landmap = derive2 { name="landmap"; version="0.0.13"; sha256="04pycbi0pf2n92xzs650h2dc8yzqfvaxn8m6yxqprf3y7qjgys9c"; depends=[forestError gdalUtils geoR glmnet kernlab maptools matrixStats mlr nnet parallelMap ParamHelpers plyr ranger raster rgdal rpart sp spdep xgboost]; }; - landpred = derive2 { name="landpred"; version="1.0"; sha256="1bl17xkx18i8i7arccnjmxvhjn4yiy7w64hg4n0xmhk8pg0l3mrg"; depends=[survival]; }; + landpred = derive2 { name="landpred"; version="1.1"; sha256="074zzlwj1pml7v7y47z67j5sp3xvsngsf0asan613q1bpvc4yq49"; depends=[survival]; }; landsat = derive2 { name="landsat"; version="1.1.0"; sha256="15ymmwhkgw0lqyy2sryss3nsmkrjf4cc0bzlsr41vh5c2636srfd"; depends=[lmodel2 mgcv rgdal sp]; }; landsat8 = derive2 { name="landsat8"; version="0.1-10"; sha256="169b5ka98ka9chbmksz6syaygc9wgl8i2gz1h2xkxj3lk9jcg01r"; depends=[rgdal sp]; }; landscapeR = derive2 { name="landscapeR"; version="1.2"; sha256="1zm5mj861ycbc2m28yjqnkifx8grc4l718mf8r422m78jfakvcjy"; depends=[raster Rcpp]; }; @@ -11323,7 +11371,7 @@ in with self; { languageserversetup = derive2 { name="languageserversetup"; version="0.1.2"; sha256="05i8kcp1zpbkrqpq5vxxvxk9p7phyngxl0q6v76va0i7qnmy1v7a"; depends=[]; }; lans2r = derive2 { name="lans2r"; version="1.1.0"; sha256="0svqaz1j8vhfnm31bfp4gqshdj73wmljva4kxcv2qajmcdiqbd2s"; depends=[dplyr ggplot2 R_matlab reshape2 rlang tidyr]; }; lar = derive2 { name="lar"; version="0.1-2"; sha256="0qda0y4ag10kg83wxs3z754kc8c1dg2rwciy64klk7an4ln43i5b"; depends=[data_table treemap xlsx]; }; - lares = derive2 { name="lares"; version="5.0.2"; sha256="0lrw1mw6qwhv7mcpr42gwjrafjv7il5wk0js8gqn440qgjlywm28"; depends=[dplyr ggplot2 h2o httr jsonlite lubridate magrittr openxlsx patchwork pROC rlang rpart rpart_plot rvest stringr tidyr yaml]; }; + lares = derive2 { name="lares"; version="5.0.3"; sha256="1fbpcjmj3f0ff39jh5kkk7lj7596zkpv46khq62yr6a0dbw5j9df"; depends=[dplyr ggplot2 h2o httr jsonlite lubridate magrittr openxlsx patchwork pROC rlang rpart rpart_plot rvest stringr tidyr yaml]; }; largeList = derive2 { name="largeList"; version="0.3.1"; sha256="0csijzlxajj0rh24w5n7fs6ss301zr6zfv5khyq4a9g437bwhc2i"; depends=[]; }; lars = derive2 { name="lars"; version="1.2"; sha256="0blj44wqrx6lmym1m9v6wkz8zxzbjax2zl6swgdczci0ixb5nx34"; depends=[]; }; lasso2 = derive2 { name="lasso2"; version="1.2-22"; sha256="1l87djh539m444p5nl9975dd3v5nc7j8af9rj4xr54h5d0mbcbjv"; depends=[]; }; @@ -11428,20 +11476,20 @@ in with self; { leastcostpath = derive2 { name="leastcostpath"; version="1.8.0"; sha256="1106wh2yy048jimiyb3gwm9d00jfq4wk0dnj4a5sfk90rkg28acw"; depends=[gdistance Matrix pbapply raster rgdal rgeos sp]; }; ledger = derive2 { name="ledger"; version="2.0.9"; sha256="0ynr1g7vfkabl78zjnshyxixk45g28bi9h1p4zjfl83009yhqjwx"; depends=[dplyr rlang stringr tibble tidyr tidyselect]; }; leerSIECyL = derive2 { name="leerSIECyL"; version="1.0.2"; sha256="1zx28gpnys9mmhq7wwljfnq92wj1h1vxgqiirnfmn36z942nvmxl"; depends=[RCurl]; }; - lefko3 = derive2 { name="lefko3"; version="3.8.0"; sha256="1x8nrm6zvgkv7j0jrq69lvl0a3g9ysvibq8457azy7k5nzsla4zl"; depends=[glmmTMB lme4 MASS MuMIn pscl Rcpp RcppArmadillo SparseM stringr VGAM]; }; + lefko3 = derive2 { name="lefko3"; version="4.0.1"; sha256="06dng2y2ip629nf94h9lwksrwgllhh69dqvpxq9d6d289nr88s6a"; depends=[glmmTMB lme4 MASS MuMIn pscl Rcpp RcppArmadillo SparseM stringr VGAM]; }; legco = derive2 { name="legco"; version="0.1.4"; sha256="0fd1d2zf510lyrwclsy57d8lgqprk6p8c6ghxglgm6gbx9d2yrgg"; depends=[dplyr httr jsonlite]; }; legion = derive2 { name="legion"; version="0.1.0"; sha256="0lpxg3jx9ll3748aixr84yl44ig8arqj6axzr80402kzjndc2z3h"; depends=[greybox nloptr pracma Rcpp RcppArmadillo smooth statmod zoo]; }; legislatoR = derive2 { name="legislatoR"; version="1.0"; sha256="1553hpb2cmv3hw6v4c7qwgg8n18jwx101yaqnmaaiv8gfyh6j43m"; depends=[curl dplyr]; }; legocolors = derive2 { name="legocolors"; version="0.3.1"; sha256="0ds9c2x0x590yk7mrjm4hh7k72p51slssg7jlprd71mw6hry91ma"; depends=[]; }; leiden = derive2 { name="leiden"; version="0.3.9"; sha256="03gaxpcab3a1av5lk8r5ll1s858gvyx5ndknci1sia96w1v44xc1"; depends=[igraph Matrix reticulate]; }; - leidenAlg = derive2 { name="leidenAlg"; version="0.1.1"; sha256="1540h4jak4g482d3g9iqrgp388mmbw3640swh9bsk6xhg1j8r0s7"; depends=[igraph Matrix Matrix_utils Rcpp RcppArmadillo RcppEigen sccore]; }; + leidenAlg = derive2 { name="leidenAlg"; version="1.0.0"; sha256="14bswisavxsvczcibzh8j5135z3bq5z6ajd9n8s1dn957g3sk8va"; depends=[igraph Matrix Matrix_utils Rcpp RcppArmadillo RcppEigen sccore]; }; leiv = derive2 { name="leiv"; version="2.0-7"; sha256="15ay50886xx9k298npyksfpva8pck7fhqa40h9n3d7fzvqm5h1jp"; depends=[]; }; lemon = derive2 { name="lemon"; version="0.4.5"; sha256="1y3ljidhqdakxlya2npj2w0az820g8kw6gl1cfm4f0cxvzgd1ly4"; depends=[ggplot2 gridExtra gtable knitr lattice plyr rlang scales]; }; lenses = derive2 { name="lenses"; version="0.0.3"; sha256="08akwzlc5gk2rxbh9xp67n5ahdcld60932ascczjv0accrkxizhk"; depends=[magrittr rlang tidyselect]; }; leontief = derive2 { name="leontief"; version="0.2"; sha256="1gy23047c6gci9m83yrb662d5685x1kky6m94w68swms59gdc6yp"; depends=[Rcpp RcppArmadillo]; }; leri = derive2 { name="leri"; version="0.0.1"; sha256="1309v58xdw3p6y2wpnl64vgsds5kvfiary2a3fa041kz23jzbp3c"; depends=[ncdf4 raster]; }; lero_lero = derive2 { name="lero.lero"; version="0.2"; sha256="03ll7jzcay0swwpmxyf0y9k2h8mxx4p5v3ggm9dgdz4j99934l70"; depends=[]; }; - lessR = derive2 { name="lessR"; version="4.0.6"; sha256="1qw99fnb1zsvhgcxfjhj8snv7lzwlazpl586x16f9y9y61897vbv"; depends=[colorspace ellipse knitr lattice latticeExtra leaps openxlsx robustbase shiny viridisLite]; }; + lessR = derive2 { name="lessR"; version="4.0.8"; sha256="1ryh2sijl55jlzj31wgrjymi2hl50xssh284qqb3fcwkw47adf6g"; depends=[colorspace ellipse knitr lattice latticeExtra leaps openxlsx robustbase shiny viridisLite]; }; lest = derive2 { name="lest"; version="1.1.0"; sha256="1d69kvdl31crv4ik8bwylq3s3f4skzrjc4x49c79w443g64n2jp9"; depends=[]; }; lestat = derive2 { name="lestat"; version="1.9"; sha256="1skxymdf3ncmdbskh7711xxgwsmwxfxnl52gcgw06jscx6s6wrsd"; depends=[MASS]; }; letsR = derive2 { name="letsR"; version="4.0"; sha256="07l1wgwnkqnvh47ssg62vj88vgml52n0934w00pjxdk90kk3c5zs"; depends=[fields geosphere maps maptools raster rgdal rgeos sp XML]; }; @@ -11470,7 +11518,7 @@ in with self; { libbib = derive2 { name="libbib"; version="1.6.2"; sha256="1d6d4fc9bpj8lkkblqcccdcsf21136vdr38kzy91259z3525gvcg"; depends=[curl data_table pbapply stringr xml2]; }; libcoin = derive2 { name="libcoin"; version="1.0-9"; sha256="1syrcdj5qg5m3zd3dlxgpfklswbalfg42w058dr09hnzqsvx0z9d"; depends=[mvtnorm]; }; libgeos = derive2 { name="libgeos"; version="3.10.0-1"; sha256="0mvdz8lcmfriiy3rq9nwlrjy8lppfk174ibxnssmjzqmrqr035j4"; depends=[]; }; - libr = derive2 { name="libr"; version="1.2.1"; sha256="0gc799lcwprjj0myn0fyh65lybynn1hl3x04xs7zxq1ijbcs8j9q"; depends=[crayon data_table dplyr haven openxlsx Rcpp readr readxl tibble]; }; + libr = derive2 { name="libr"; version="1.2.2"; sha256="1b3wfkzmxvfjrapydm3i5kgld6vpl6b9ywbili8zygs3p5pfyp5b"; depends=[crayon data_table dplyr haven openxlsx Rcpp readr readxl tibble]; }; librarian = derive2 { name="librarian"; version="1.8.1"; sha256="0bbgx9pdwcv64p6zdrw3m0893ar4bw6z90vhbgplp53l65cch548"; depends=[BiocManager remotes]; }; librarysnapshot = derive2 { name="librarysnapshot"; version="0.1.2"; sha256="0v4x564zpm58kxs5n84bi6mcjhbzjg6a2lc30vsc8kbm3qy0nq38"; depends=[]; }; libsoc = derive2 { name="libsoc"; version="0.7"; sha256="1r548rvj98wl0yp6jx5d2qhvy1y4883qp0w3jjk97vp07a1cywn8"; depends=[]; }; @@ -11631,7 +11679,8 @@ in with self; { logging = derive2 { name="logging"; version="0.10-108"; sha256="13gd40ygx586vs6xcp6clg69a92aj8zxlk1rn3xzkx8klfjimjc5"; depends=[]; }; loggit = derive2 { name="loggit"; version="2.1.1"; sha256="1fkr2fnfazxhm3pq0gysxhz6aqsdx38d017y0xbmlsg9hfgfx6q1"; depends=[]; }; logiBin = derive2 { name="logiBin"; version="0.3"; sha256="06y5bqm3j6xdr1cd607v2sqkghnd2bv6bvxc6cz8dvp8jabqa0zm"; depends=[data_table doParallel foreach iterators partykit]; }; - logib = derive2 { name="logib"; version="0.1.1"; sha256="0s9fmdqklmffhvqmlznbrmxvpn63w77zqmk41y0q12hh81npib64"; depends=[lubridate readxl]; }; + logib = derive2 { name="logib"; version="0.1.2"; sha256="09c528wrgyk0cg1flx2fsl53q4v9442rr44g9kh5jznqs788608b"; depends=[lubridate readxl]; }; + logicDT = derive2 { name="logicDT"; version="1.0.1"; sha256="0gdzrbjq2pyfhsm8840q8dvrcfj3kvzkc8grgvpv05j11fpzwyq3"; depends=[]; }; logihist = derive2 { name="logihist"; version="1.0"; sha256="1q3322rh3g31c5i80aw54pln0m1jgxmbx30cn31nlh3ijkvnpq9a"; depends=[ggplot2]; }; logistf = derive2 { name="logistf"; version="1.24"; sha256="0syrg4v1cik0vn2h7452n84nbpdbhs5h0g5k9jaqkdr1zq8x6qb5"; depends=[formula_tools mgcv mice]; }; logistic4p = derive2 { name="logistic4p"; version="1.5"; sha256="0h0dxyklqc95ykyril1a3d2bdnszj5l9dqbxzh2wbfmk06prvh8b"; depends=[MASS]; }; @@ -11641,8 +11690,8 @@ in with self; { logitr = derive2 { name="logitr"; version="0.4.0"; sha256="0j3p0lkwdj700nfjpkc7n4kf3xjz7ak69q8rziilpiqg7dxf1502"; depends=[MASS nloptr randtoolbox]; }; loglognorm = derive2 { name="loglognorm"; version="1.0.1"; sha256="0rhx769a5nmidpbpngs2vglsbkpgw9badz3kj3jfmpj873jfnbln"; depends=[]; }; logmult = derive2 { name="logmult"; version="0.7.3"; sha256="10dmvvwlaw8dn6h0343d8apn7rlc2b8nys3f38x9wlvd9xhhlwxm"; depends=[gnm qvcalc]; }; - lognorm = derive2 { name="lognorm"; version="0.1.9"; sha256="0mx7wgqpiprwvh5srf8z9f8glz2kgh8l15b2pydb4bvqx1m54kxa"; depends=[Matrix]; }; - logr = derive2 { name="logr"; version="1.2.6"; sha256="0zz5ahk4n5b2qsa3zkh1s84dg86ihgflv3rn23j29wp44m7kl226"; depends=[this_path withr]; }; + lognorm = derive2 { name="lognorm"; version="0.1.10"; sha256="021g3g7hyxcrj2lzqfjxj2ypcn8c6qminr0l6sdydynvjdjjv0pc"; depends=[Matrix]; }; + logr = derive2 { name="logr"; version="1.2.7"; sha256="0ns4i2snvcfbrb00wlp570j9y67rb4vmxgyz1vzllskz3klraqly"; depends=[this_path withr]; }; logspline = derive2 { name="logspline"; version="2.1.16"; sha256="12hkdi77vkic05p2vhap025xdcg1n53ywm239v18713pihdlj63l"; depends=[]; }; lokern = derive2 { name="lokern"; version="1.1-9"; sha256="1fms79bb4y6ryzmxhpc544zh52xgd879gpcigc24bjhd7whl9nry"; depends=[sfsmisc]; }; lolR = derive2 { name="lolR"; version="2.1"; sha256="0lrmn9lzyyfr1y0i7qp6xfpdxyisbkajwg0jkrqkiw687psnh2rc"; depends=[abind ggplot2 irlba MASS pls robust robustbase]; }; @@ -11713,7 +11762,7 @@ in with self; { lsplsGlm = derive2 { name="lsplsGlm"; version="1.0"; sha256="1qh68r033fwq1hc19h2srl1k6znvvvrcp38ghxadsksjfxllvniy"; depends=[]; }; lsr = derive2 { name="lsr"; version="0.5.1"; sha256="1vx3wy7s8wr79almwn1c24x91c5sxndpbi2hi7fa6xa8w7xl3lzn"; depends=[]; }; lss2 = derive2 { name="lss2"; version="1.1"; sha256="1rkv26zq36zyh891xkkllxphwplljmzpy15g619x1w4qvsajyyg8"; depends=[quantreg]; }; - ltable = derive2 { name="ltable"; version="1.0"; sha256="1sx6bknbfkays899yq7wqpvc7izz757smaw9g9i7wii7d7a75plr"; depends=[]; }; + ltable = derive2 { name="ltable"; version="2.0.1"; sha256="15il58g7m09z0alln12xp1g6y3i8vaxggf229nbgb5gmcf4z97dx"; depends=[clipr Rcpp RcppGSL]; }; ltbayes = derive2 { name="ltbayes"; version="0.4"; sha256="0kv5k56hmc1m7bv5pmmmk46822szsgwqgpwydn0x56az7xn6hjk6"; depends=[mcmc MHadaptive numDeriv]; }; ltm = derive2 { name="ltm"; version="1.1-1"; sha256="1qrgzwx5l58qf5rfp1knxc84r0g943q5sdr3ky74zzwpnmrf2vf7"; depends=[MASS msm polycor]; }; ltmix = derive2 { name="ltmix"; version="0.2.1"; sha256="03i0gr79xiqnny57g0y9w5dfpw51gqhrkff2rh8rggsni20pzm1h"; depends=[gtools pracma]; }; @@ -11803,7 +11852,7 @@ in with self; { makeProject = derive2 { name="makeProject"; version="1.0"; sha256="09q8xa5j4s5spgzzr3y06l3xis93lqxlx0q66s2nczrhd8nrz3ca"; depends=[]; }; makedummies = derive2 { name="makedummies"; version="1.2.1"; sha256="062rvijhy2dybpgxzp44cg46bfyb8lp9yasv3mhskhf3yg717sqp"; depends=[tibble]; }; makemyprior = derive2 { name="makemyprior"; version="1.0.0"; sha256="0l4xpalw13x07fr1g9h6dfcmb16dk712pp70mnshqjhy1vlq2ajp"; depends=[ggplot2 knitr MASS Matrix rlang rmarkdown shiny shinyBS shinyjs testthat visNetwork]; }; - makepipe = derive2 { name="makepipe"; version="0.0.5"; sha256="1s8cp8sv3ckhp4j4f4nypmk04p73zbjwf51cwbnc40kq7wqkjnw2"; depends=[cli R6 visNetwork]; }; + makepipe = derive2 { name="makepipe"; version="0.1.0"; sha256="087lp7s70nx1zfs3mw4jk43miw4sc0gfd5faxqpnkgbpx01iaa51"; depends=[cli R6 visNetwork]; }; maketools = derive2 { name="maketools"; version="1.2.0"; sha256="1i2s48s0qfk9nwkkbx5hr0q7b0c8xziyrsg1klianmk9jqfngg36"; depends=[sys]; }; malan = derive2 { name="malan"; version="1.0.2"; sha256="0qwf0r2gwpb93gzvyp8vaw7j6rhghr6nbrfp8xw876n5j5b9jhj3"; depends=[dplyr igraph magrittr Rcpp RcppArmadillo RcppProgress tibble tidygraph]; }; malani = derive2 { name="malani"; version="1.0"; sha256="1jps28gfkiysr356ackxf1my5xz6rpx3a2bv68pziy2614hrqbs9"; depends=[e1071]; }; @@ -11820,7 +11869,7 @@ in with self; { manifestoR = derive2 { name="manifestoR"; version="1.5.0"; sha256="0b4x4ampzmxcmlcyvl683rwynzwjg1cyx5zpamgy8027fh376zcp"; depends=[base64enc dplyr DT functional htmltools htmlwidgets httr jsonlite magrittr NLP psych purrr readr tibble tidyselect tm zoo]; }; manipulate = derive2 { name="manipulate"; version="1.0.1"; sha256="1klknqdfppi5lf6zbda3r2aqzsghabcsaxmvd3vw3cy3aa984zky"; depends=[]; }; manipulateWidget = derive2 { name="manipulateWidget"; version="0.11.1"; sha256="1dpgzmiv08afm57yxr017b014lfn9h3pa4w65prk5k3dgn6p4wsv"; depends=[base64enc codetools htmltools htmlwidgets knitr miniUI shiny shinyjs webshot]; }; - manymodelr = derive2 { name="manymodelr"; version="0.3.6"; sha256="0a444kn38qsc197f6625ds61c1aww1kwh9dvh3jppabdf691pnv5"; depends=[caret dplyr e1071 ggplot2 lme4 Metrics]; }; + manymodelr = derive2 { name="manymodelr"; version="0.3.7"; sha256="0kc4y9i21qkcg0pkwlas2mm06s54s70w5ybw4215qjwiy6xax268"; depends=[caret dplyr e1071 ggplot2 lme4 Metrics]; }; maotai = derive2 { name="maotai"; version="0.2.2"; sha256="10s9fcfn6i0rkfhv8bq452ianjkah6srxa5fc2ymhqzm6m1r5b3j"; depends=[cluster dbscan fastcluster labdsv Matrix RANN Rcpp RcppArmadillo RcppDist Rdpack RSpectra Rtsne shapes]; }; mapReasy = derive2 { name="mapReasy"; version="1.0"; sha256="13va0z967ckwxnnianki5aj66km0x6r37nj4mz9qd3b0bps4g2kj"; depends=[Hmisc rgdal sp]; }; mapSpain = derive2 { name="mapSpain"; version="0.4.0"; sha256="043a79q2pc4c6w01pad2zyk3chjkv26vxhlvym30qq6ipdljl0sh"; depends=[countrycode giscoR rappdirs sf]; }; @@ -11835,7 +11884,7 @@ in with self; { mapdeck = derive2 { name="mapdeck"; version="0.3.4"; sha256="0agbf6bs3z7gwx1dj9jqlq6cllq5b65x89lkplm5mwhr20lzwvhr"; depends=[BH colourvalues geojsonsf geometries googlePolylines htmlwidgets jsonify magrittr rapidjsonr Rcpp sfheaders shiny spatialwidget]; }; mapedit = derive2 { name="mapedit"; version="0.6.0"; sha256="1ix0sjsqb6646xyi73am9ic97plw9y9p4pl8mrkpzvqzm0pxdhxx"; depends=[dplyr htmltools htmlwidgets jsonlite leafem leaflet leaflet_extras leafpm mapview miniUI raster scales sf shiny sp]; }; mapfit = derive2 { name="mapfit"; version="0.9.7"; sha256="16a318bz3my27qj0xzf40g0q4bh9alg2bm6c8jbwgswf1paq1xmx"; depends=[Matrix]; }; - mapi = derive2 { name="mapi"; version="1.0.3"; sha256="0axypjmxr0kg8wqizywdh24n51xbfjdscis5kvs78044kds99sag"; depends=[data_table pbapply Rcpp sf]; }; + mapi = derive2 { name="mapi"; version="1.0.4"; sha256="0mlm3vp5ffjszl6zprfanr6gjbrdjrl82m7hk5q7z42h37aasc45"; depends=[data_table pbapply Rcpp sf]; }; mapmisc = derive2 { name="mapmisc"; version="1.8.0"; sha256="0xp2ns6j8craz74jw4gjjhzkfbbihcy8d9dg1i08hiws743kzd8s"; depends=[raster sp]; }; mapping = derive2 { name="mapping"; version="1.3"; sha256="1in4fjdiass73fdh3y937c600bdbv8gwjzxb5wj07wkc76jxb5ba"; depends=[cartography curl dplyr geojsonio ggplot2 htmltools httr jsonlite leaflet leafpop leafsync mapview rgdal s2 sf stringi stringr tmap tmaptools viridisLite]; }; mappings = derive2 { name="mappings"; version="0.1"; sha256="1f7m6nbdzdcxsk4m8rh8fzrck8pzxl2lgfz5c6wramwmp8rxczzb"; depends=[]; }; @@ -11848,6 +11897,7 @@ in with self; { mapsPERU = derive2 { name="mapsPERU"; version="0.1.3"; sha256="0s3qlvf1cwc4l2g1z6h30cijsnxdyyxiprms0lvs1fxx2kf64f7i"; depends=[tibble]; }; mapsRinteractive = derive2 { name="mapsRinteractive"; version="1.0.1"; sha256="03x5mza9y5kdqshma0k7bynmd3fffayy1j243m5bhw7ln85ws73x"; depends=[gstat raster rgdal rgeos sp]; }; mapsapi = derive2 { name="mapsapi"; version="0.5.0"; sha256="0cf9ycj1a0vik0j10nif69n7rirrvkan9md55mgicw4wmcn1rs6i"; depends=[bitops magrittr RgoogleMaps sf stars xml2]; }; + mapscanner = derive2 { name="mapscanner"; version="0.0.6"; sha256="017m33v2523rjmspfbzq1xnb3clzmbn4p1qqzp480j71wy5c1dry"; depends=[cli curl fs glue magick magrittr memoise pdftools png purrr raster Rcpp reproj RNiftyReg sf slippymath tibble]; }; mapsf = derive2 { name="mapsf"; version="0.3.0"; sha256="0kyqzpk14k4qs4vqlzpsbl29wfkspd3c95mqvlzh1a8shw70jfrn"; depends=[classInt Rcpp sf]; }; maptiles = derive2 { name="maptiles"; version="0.3.0"; sha256="025n9fpl55n9wnslpjqr4z5y0q4mn68dplb3fm7wyn968kw7sbig"; depends=[curl png sf slippymath terra]; }; maptools = derive2 { name="maptools"; version="1.1-2"; sha256="0fa4a43zax8gn3jdp4ngqav61x4g6l33bg9wzqbngkbjhipck59r"; depends=[foreign lattice sp]; }; @@ -11871,6 +11921,7 @@ in with self; { marketr = derive2 { name="marketr"; version="0.0.2"; sha256="12nhlz40n80i6zg7y5w9zknq9qpk9qwd3wbvvya1ff8gq195147w"; depends=[dplyr magrittr tibble tidyr]; }; markmyassignment = derive2 { name="markmyassignment"; version="0.8.6"; sha256="1w96jmb6iiw4ghmc73l721fdrq5k197fv21fz7spiapaa5xzbkrb"; depends=[checkmate codetools httr rlang testthat yaml]; }; markophylo = derive2 { name="markophylo"; version="1.0.8"; sha256="05hfykjzx4wf2p1d6dvyx5lizfxmq3zprvnfg74r7l1izp7wpl38"; depends=[ape numDeriv phangorn Rcpp RcppArmadillo]; }; + markovMSM = derive2 { name="markovMSM"; version="0.1.0"; sha256="022j7cg51ga5vwvkdn74xliqdhk5c26fh1z62iicbyvigjrp8r7g"; depends=[mstate survidm survival]; }; markovchain = derive2 { name="markovchain"; version="0.8.6"; sha256="1al3b76qi6var3gpfqxy6kp0varyp7sbblrhm6hvzf8nwqvl3hq2"; depends=[expm igraph matlab Matrix Rcpp RcppArmadillo RcppParallel]; }; marl = derive2 { name="marl"; version="1.0"; sha256="0rndnf3rbcibv3gsrw1kfp5zhg37cw9wwlz0b7dbwprd0m71l3pm"; depends=[]; }; marmap = derive2 { name="marmap"; version="1.0.6"; sha256="16r7in3m63l7fdwxwfdphcd4fr073fb675zabjxphpxmclikyxdz"; depends=[adehabitatMA DBI gdistance geosphere ggplot2 ncdf4 plotrix raster reshape2 RSQLite shape sp]; }; @@ -11910,7 +11961,7 @@ in with self; { matrixcalc = derive2 { name="matrixcalc"; version="1.0-5"; sha256="1jkgl1v1q7cqpl1rf49qahdr9y0f33f0ldsbgby8xhfv0vpy21jr"; depends=[]; }; matrixdist = derive2 { name="matrixdist"; version="1.1.3"; sha256="0yvw6rn7js06qhz2qpj9m5h9hjwa7nswkmkyzi1vpa24inbfpzah"; depends=[Rcpp RcppArmadillo]; }; matrixpls = derive2 { name="matrixpls"; version="1.0.13"; sha256="0m9gqq5waicj3znlsyz50cj6w1x6rkvfwknavhxid8r4p9h891ak"; depends=[assertive lavaan MASS matrixcalc psych]; }; - matrixprofiler = derive2 { name="matrixprofiler"; version="0.1.5"; sha256="0rm99pibl5vyvf3w5x6d12wppjxb68n3qy3vvvpnawb8m2h3dkd1"; depends=[checkmate Rcpp RcppParallel RcppProgress RcppThread]; }; + matrixprofiler = derive2 { name="matrixprofiler"; version="0.1.7"; sha256="0jicclzjil9yqlapzji23wm916aprv1fyad1qrn6ip7kap3m2kln"; depends=[checkmate Rcpp RcppParallel RcppProgress RcppThread]; }; matrixsampling = derive2 { name="matrixsampling"; version="2.0.0"; sha256="05dbn7rj07jx1hj7i6k3akf11hysxg6v32kav9fvsqmiy2zkippa"; depends=[keep]; }; matsbyname = derive2 { name="matsbyname"; version="0.4.25"; sha256="1rqha59w4kf10byz0p41r7iaw8zwhcg06jhm94na3mcxxbd9jqjk"; depends=[assertthat dplyr Hmisc magrittr purrr rlang stringi tibble]; }; matsindf = derive2 { name="matsindf"; version="0.3.9"; sha256="0d764q54kw2ywanx7v5r1c0rjd39js77ghi1qjdhy2dz6qx6yiy4"; depends=[dplyr magrittr matsbyname purrr rlang tibble tidyr]; }; @@ -11982,6 +12033,7 @@ in with self; { mcmcse = derive2 { name="mcmcse"; version="1.5-0"; sha256="0qvlkv7j35h2lxdzhbsbsrf1cgsbgf4in7lxgwmx7vs85k10v0ja"; depends=[ellipse fftwtools Rcpp RcppArmadillo testthat]; }; mco = derive2 { name="mco"; version="1.15.6"; sha256="10h5d2lw6ybyva44nn5wml6v3ljpnv9m1b2lh36vg2cwrdwy5sqp"; depends=[]; }; mcompanion = derive2 { name="mcompanion"; version="0.5-3"; sha256="0051agyzbhrsxi9wpfpqcq98h7y25627s2czf30qxcq80m7xbhj0"; depends=[gbutils MASS Matrix Rdpack]; }; + mcp = derive2 { name="mcp"; version="0.3.1"; sha256="07acx5mvp4znibjyacyjrnb4f5glq1xh4qhzysvkqj4vl1wai6vl"; depends=[bayesplot coda dplyr future future_apply ggplot2 loo magrittr patchwork rjags rlang stringr tibble tidybayes tidyr tidyselect]; }; mcparallelDo = derive2 { name="mcparallelDo"; version="1.1.0"; sha256="1ivh0d4f7ks6xwcjywk62h1zhr7h5bbhzpisky7973wi4g8vipbn"; depends=[checkmate R_utils R6]; }; mcprofile = derive2 { name="mcprofile"; version="1.0-1"; sha256="118n3pxzjm4j9y09d1n2hw7pm0b8b0m8mnm5v9kq76vignklh75l"; depends=[ggplot2 mvtnorm quadprog]; }; mcr = derive2 { name="mcr"; version="1.2.2"; sha256="0n1wd8z7j9s20ym8m6vbpixibmfb3qkykb3z92jv3pbamjf2sxsc"; depends=[]; }; @@ -12059,7 +12111,7 @@ in with self; { memochange = derive2 { name="memochange"; version="1.1.1"; sha256="144134kpchb7ps8b2g7pyga5add0iqphzcwygf11aybmbzmp90x7"; depends=[forecast fracdiff longmemo LongMemoryTS sandwich strucchange urca]; }; memofunc = derive2 { name="memofunc"; version="1.0.2"; sha256="02y32mnwafqnsvs3vy4g8v0jmdvnx935dqavy3q1f2n8c76p0bk9"; depends=[digest magrittr uuid]; }; memoiR = derive2 { name="memoiR"; version="1.1-3"; sha256="1p3s0rv4l44gx726frrwp64xv7xakyh2svjqglg85pv3krhlw4b4"; depends=[bookdown rmarkdown usethis]; }; - memoise = derive2 { name="memoise"; version="2.0.0"; sha256="1bzcv7pmls3bx2w5ccv1pm20wycbfqba1v76k0fjgmjsm6hy76pz"; depends=[cachem rlang]; }; + memoise = derive2 { name="memoise"; version="2.0.1"; sha256="1srdzv2bp0splislrabmf1sfbqfi3hn189nq7kxhgjn8k3p38l7q"; depends=[cachem rlang]; }; memor = derive2 { name="memor"; version="0.2.3"; sha256="1b3rjh121in7gi6khbhh2d1r0998a24ifcg6hpv8cdksl6lhm330"; depends=[knitr rmarkdown yaml]; }; memoria = derive2 { name="memoria"; version="1.0.0"; sha256="05nx6xkgf1mkn1ajjizwp66xhn7ddbvgdnmkdbcl4s7sq456vczw"; depends=[cowplot ggplot2 HH ranger stringr tidyr viridis viridisLite zoo]; }; memuse = derive2 { name="memuse"; version="4.2-1"; sha256="1wvwnjaaiv2647561z2b55dss35033ildx4kk8hzxfzgsjmdpsgm"; depends=[]; }; @@ -12076,7 +12128,8 @@ in with self; { metR = derive2 { name="metR"; version="0.11.0"; sha256="09ar9lckrzbvcy0jgnwlrnj96ln426yh70dgjfmlac68bhinv2fw"; depends=[checkmate data_table digest fields Formula formula_tools ggplot2 gtable isoband lubridate memoise plyr purrr RCurl scales sp stringr]; }; metRology = derive2 { name="metRology"; version="0.9-28-1"; sha256="1syjwblyd18myxrs0hx4m91fgb6zs3r4g7w701j2f2pw6j9mvz0y"; depends=[MASS numDeriv robustbase]; }; metScanR = derive2 { name="metScanR"; version="1.2.3"; sha256="1v7zrxj3wspx6f5n5s75skcygbf3r85rn4p0z9iwbrbrgxwi4qgs"; depends=[geosphere leaflet matlab plyr RCurl]; }; - meta = derive2 { name="meta"; version="5.0-1"; sha256="1kmlknbclvxjc4sk6rzlz8xpblzbxfphmzhpvk5xwa9nk4clkr02"; depends=[CompQuadForm lme4 metafor xml2]; }; + meta = derive2 { name="meta"; version="5.1-0"; sha256="0s19pfmxg5wx86jpyb1pmd7yvjfg01yw699c4zg0dkwp2cb43a0p"; depends=[CompQuadForm lme4 metafor xml2]; }; + meta_shrinkage = derive2 { name="meta.shrinkage"; version="0.1.0"; sha256="04ld3ka1zn86l38dxgqzmf6s8ak9g25p5yprmnlgwsiwihww8017"; depends=[]; }; meta4diag = derive2 { name="meta4diag"; version="2.0.8"; sha256="1ila8x9r1rdmlwfpzfx1zj5yx1m4yrbhyb74db4wqbh1dswn7zsm"; depends=[caTools shiny shinyBS sp]; }; metaBLUE = derive2 { name="metaBLUE"; version="1.0.0"; sha256="0ppn4bvr10z32pghmv4wjv86k6n5y5bkfxc6h5mvb556v6jnl6d8"; depends=[Matrix]; }; metaBMA = derive2 { name="metaBMA"; version="0.6.7"; sha256="1nk76cw3wb8gwknn5xq75400pfbqx72rf499nylc6yr9nascq2rk"; depends=[BH bridgesampling coda LaplacesDemon logspline mvtnorm Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; @@ -12093,7 +12146,6 @@ in with self; { metaSurvival = derive2 { name="metaSurvival"; version="0.1.0"; sha256="05f103fi287y64gys73a55snw54bnph69q8dykfii10dykd44g0y"; depends=[mvtnorm survival]; }; metaboData = derive2 { name="metaboData"; version="0.6.2"; sha256="1iiy9ipyp3h1rvcbjld6bdy1jgnxbixvgs5xqwly1yj4mvri0bsg"; depends=[dplyr fs magrittr piggyback purrr readr rlang stringr tibble yaml]; }; metabolic = derive2 { name="metabolic"; version="0.1.0"; sha256="1bk8d0sxlgc17d7x02zmx23fdqz39c9zpin16bzhcj602kjcq0y8"; depends=[cli dplyr forcats ggfittext ggimage ggplot2 glue magrittr meta patchwork purrr rmarkdown scales stringr tibble tidyr usethis]; }; - metabolighteR = derive2 { name="metabolighteR"; version="0.1.2"; sha256="1v50b0pp2hzn6b4xrlclaks3kd315rir44acm24mmqhqybj6lhls"; depends=[crayon dplyr httr magrittr purrr]; }; metacart = derive2 { name="metacart"; version="2.0-3"; sha256="1wim72fvhx6cyc16c9gl8cwzbhlpzilk7q8gi4jnzzazqmc1kb5n"; depends=[ggplot2 gridExtra Rcpp rpart]; }; metacoder = derive2 { name="metacoder"; version="0.3.5"; sha256="0d0ihglsal9cx03jjq472x2xlqdflgxhzkr0vwvjpq0rqvq5syva"; depends=[ape cowplot crayon dplyr GA ggfittext ggplot2 igraph lazyeval magrittr R6 Rcpp RCurl readr rlang seqinr stringr taxize tibble vegan]; }; metacom = derive2 { name="metacom"; version="1.5.3"; sha256="0c0gzn28cl2sl52wx2n36jm9c18d9s3yqjyx88kgbmd9069z1nvk"; depends=[vegan]; }; @@ -12106,7 +12158,7 @@ in with self; { metafor = derive2 { name="metafor"; version="3.0-2"; sha256="12hk6k2awbf022bbkh0zqcmm8fi534yzgv83c5rxl9djjx8l7pq2"; depends=[mathjaxr Matrix nlme pbapply]; }; metaforest = derive2 { name="metaforest"; version="0.1.3"; sha256="1q6m60cd7gl7y0gdjd10ky25hwv5jc4x5g5sr5w61xc3j2hnw8in"; depends=[data_table ggplot2 gtable metafor ranger]; }; metafuse = derive2 { name="metafuse"; version="2.0-1"; sha256="1zdw22f5kzvy2xr3c2csy873hcags60as567brc2sw17d0apfy8j"; depends=[evd glmnet MASS Matrix]; }; - metagam = derive2 { name="metagam"; version="0.3.0"; sha256="0h2l2lmpicabbnlfq4aw6n1wy20lw7f43v9khv4as7dz7k158ihp"; depends=[ggplot2 knitr metafor mgcv rlang]; }; + metagam = derive2 { name="metagam"; version="0.3.1"; sha256="05rijhhqwlfd563fx4r4kbqnr9hgbxn1qh05h9ljny0js15q06b9"; depends=[ggplot2 metafor mgcv rlang]; }; metagear = derive2 { name="metagear"; version="0.7"; sha256="1gwfk6v591xxsccbi287b90vnf5c1jfz72jxcxy9iswp0jpjflaq"; depends=[MASS Matrix metafor stringr]; }; metaggR = derive2 { name="metaggR"; version="0.2.0"; sha256="00w40ip630p42h9v87zq08xrggpwkvbqmn4m0963s7x7yjscwp9d"; depends=[MASS]; }; metaheuristicOpt = derive2 { name="metaheuristicOpt"; version="2.0.0"; sha256="0ra4hl9l1jlzymj218m2i6xrxfacyx4aaln5pk7q4di2ks0nq11m"; depends=[]; }; @@ -12136,7 +12188,7 @@ in with self; { meteo = derive2 { name="meteo"; version="0.1-5"; sha256="0n37plka9vsxwd03lca3h6m8dcz3f1bi46jn3bz7vyilnkq9hcdk"; depends=[gstat plyr raster rgdal snowfall sp spacetime]; }; meteoForecast = derive2 { name="meteoForecast"; version="0.54"; sha256="046c0z66hsyfrnksdq40xv3kf2di0ywv5wfb9s7b7999s694ak18"; depends=[ncdf4 raster sp XML zoo]; }; meteogRam = derive2 { name="meteogRam"; version="1.0"; sha256="167gyxjnl4dyfqs3znv8sdpkvpqdxzdqi1g730s30gycrm9snap9"; depends=[ggplot2 RadioSonde]; }; - meteoland = derive2 { name="meteoland"; version="0.9.7"; sha256="0m2q451zgvimd3xx3h66c3blzp7r5waj8ddb9p8hg5aj3drq2l8p"; depends=[httr jsonlite ncdf4 Rcpp rgdal sp spdep]; }; + meteoland = derive2 { name="meteoland"; version="1.0.1"; sha256="1160yjawyb0icgmxz963la722dqdil72kjp4253yraanw0zdzy64"; depends=[httr jsonlite meteospain ncdf4 Rcpp rgdal sf sp spdep units xml2]; }; meteor = derive2 { name="meteor"; version="0.3-4"; sha256="01009d9wpxybig4n82m48hqqg1k4x4shcjxfy8y0kk7cgfdb4naw"; depends=[Rcpp]; }; meteorits = derive2 { name="meteorits"; version="0.1.1"; sha256="1vk8pbhfc5mbkbpw7ml81gx9i8187xp3vx36pbyyhjbrpy6gqabx"; depends=[MASS pracma Rcpp RcppArmadillo]; }; meteospain = derive2 { name="meteospain"; version="0.0.3"; sha256="0qqlfli9k4472ajx57xkf9laym0znl43qy8xzdq8xnq5alv0yrsw"; depends=[assertthat cachem crayon dplyr glue httr jsonlite lubridate magrittr memoise purrr rlang sf stringr tidyr units vctrs xml2]; }; @@ -12154,7 +12206,7 @@ in with self; { mfGARCH = derive2 { name="mfGARCH"; version="0.2.1"; sha256="1pcabijwhdxhdlrdjvi2zl8la939igsdy3j1yv0ic8wvkpw1sh4x"; depends=[maxLik numDeriv Rcpp zoo]; }; mfaces = derive2 { name="mfaces"; version="0.1-3"; sha256="0pqmsflph2iplr0jlwpgbfgg523v0nw41gvjb88q1d993pyfhfdl"; depends=[face Matrix matrixcalc mgcv]; }; mfbvar = derive2 { name="mfbvar"; version="0.5.6"; sha256="1wv46h6cr0xnvr8dxymx362skf7nf77yw84y6g48rj9mbq8kkkcj"; depends=[dplyr ggplot2 GIGrvg lubridate magrittr Rcpp RcppArmadillo RcppParallel RcppProgress stochvol tibble zoo]; }; - mfdb = derive2 { name="mfdb"; version="7.1-1"; sha256="027r0sh65vwwqv81sagbsyfmf6i5gx7frj69fmd2xrw1iz1bqdkw"; depends=[DBI duckdb getPass logging rlang RPostgres RSQLite]; }; + mfdb = derive2 { name="mfdb"; version="7.2-0"; sha256="0jmydw6kv4lnyyx05ih5k4xah42pg3sjckhgxmykrpsgdvd8f96j"; depends=[DBI duckdb getPass logging rlang RPostgres RSQLite]; }; mfe = derive2 { name="mfe"; version="0.1.5"; sha256="1pw9gw9bd778s57dyjwbmrmsla4m8dkf8g49gplv4zrsvlgsgbr3"; depends=[cluster clusterCrit e1071 ECoL infotheo MASS rpart rrcov]; }; mfp = derive2 { name="mfp"; version="1.5.2"; sha256="1i90ggbyk2p1ym7xvbf4rhyl51kmfp6ibc1dnmphgw15wy56y97a"; depends=[survival]; }; mfx = derive2 { name="mfx"; version="1.2-2"; sha256="04pwp67i4sn4rf497pgy6qifwvrcmwyxn8x5sn96fy8qyrdzjfhj"; depends=[betareg lmtest MASS sandwich]; }; @@ -12190,7 +12242,7 @@ in with self; { micEconIndex = derive2 { name="micEconIndex"; version="0.1-6"; sha256="1ihly6qpyg1pms4nkvs6khxxqwr3fwg57i8pg0yhyy1apqxyj2xl"; depends=[miscTools]; }; micEconSNQP = derive2 { name="micEconSNQP"; version="0.6-8"; sha256="183hg4iap97is8cdaqxmnj9z8yybvpfnhg2kf85nfy1nl7b30xl2"; depends=[MASS miscTools systemfit]; }; micar = derive2 { name="micar"; version="1.1.2"; sha256="1zx2x6r4m0ihwhjd2n4rmk9da7p9bpadk65h7mbb0rgvwrspkzf8"; depends=[httr jsonlite]; }; - mice = derive2 { name="mice"; version="3.13.0"; sha256="11cpyqlilakan2pwjzacb9jjlazazsqdngy237nnrj8j6mky822i"; depends=[broom cpp11 dplyr generics lattice Rcpp rlang tidyr]; }; + mice = derive2 { name="mice"; version="3.14.0"; sha256="01fnfrr7adp29s5kic95r9q0rdznkz2pjmziyimnrqzyicyvfyzq"; depends=[broom cpp11 dplyr generics lattice Rcpp rlang tidyr withr]; }; miceFast = derive2 { name="miceFast"; version="0.7.1"; sha256="1vlm19b9q6539c9rqa852kkva1j3cfwbxy2y9x8khb8pqk1w0bb7"; depends=[assertthat data_table dplyr ggplot2 magrittr Rcpp RcppArmadillo tidyr UpSetR]; }; miceRanger = derive2 { name="miceRanger"; version="1.5.0"; sha256="0xm8fcvjf6pcfyyk1gnwfdac44q6b33i5byja9lqxy7vygbxmgxd"; depends=[corrplot crayon data_table DescTools FNN foreach ggplot2 ggpubr ranger]; }; miceadds = derive2 { name="miceadds"; version="3.11-6"; sha256="1xh977xralyivmi57c11rpbbbx24dhzwfnjq4m55ikzv2b40678j"; depends=[mice mitools Rcpp RcppArmadillo]; }; @@ -12207,7 +12259,7 @@ in with self; { microclustr = derive2 { name="microclustr"; version="0.1.0"; sha256="04xn8p4wgmxq1jbxawq0rhx6l7y1kddlbdfid8zsi4x4arkz7hvp"; depends=[Rcpp]; }; microcontax = derive2 { name="microcontax"; version="1.2"; sha256="004g979hyg0asbah7hxr445fidil4ibw1b8pqpjdbgmpm1qgvw7y"; depends=[microseq]; }; microdemic = derive2 { name="microdemic"; version="0.6.0"; sha256="1w4zh0vagnar95l5b8cgmcvp8q7vk2iba5g8d8g2ywynqiqcx5fc"; depends=[crul data_table httpcode jsonlite tibble]; }; - microeco = derive2 { name="microeco"; version="0.5.1"; sha256="1g3ifkxdbncrhihf6s8kfx9nv3cx4zfwl4kgg21plhv1prfzcia2"; depends=[ape data_table dplyr ggplot2 magrittr R6 RColorBrewer rlang scales tibble vegan]; }; + microeco = derive2 { name="microeco"; version="0.6.0"; sha256="1kfbfvlq2h738ipm4481jh785pvpl3xsyb37gplg9aj3s0a6q7j7"; depends=[ape data_table dplyr ggplot2 magrittr R6 RColorBrewer reshape2 rlang scales tibble vegan]; }; microhaplot = derive2 { name="microhaplot"; version="1.0.1"; sha256="0g15g7d19yz11nn2g0h8h2m8k1cvmpryz72pnalgv5yi58md5l5i"; depends=[dplyr DT ggiraph ggplot2 gtools magrittr scales shiny shinyBS shinyWidgets tidyr]; }; micromap = derive2 { name="micromap"; version="1.9.5"; sha256="18y8m63k9l4dir8w1qbbi1g86506yajvi6qs0j1588575lak1l62"; depends=[ggplot2 maptools RColorBrewer rgdal sf sp]; }; micromapST = derive2 { name="micromapST"; version="1.1.1"; sha256="15ch132x3wnpf7rmy25nah7iyfxfk90p7lvavqjhrnavhjsfxbxx"; depends=[labeling RColorBrewer stringr]; }; @@ -12216,7 +12268,7 @@ in with self; { microsamplingDesign = derive2 { name="microsamplingDesign"; version="1.0.8"; sha256="0swaqvzqbmlk9j2gr8z7x7xrkr38xndprg9k66whzcigxfh8nhiz"; depends=[abind deSolve devtools ggplot2 gridExtra gtools knitr MASS matrixcalc matrixStats plyr Rcpp RcppArmadillo readr reshape2 shiny stringr]; }; microseq = derive2 { name="microseq"; version="2.1.5"; sha256="1asdy0njy5xcykd88jxa8s5hkrh6kab566h3nf9i93yw1i6kmwip"; depends=[data_table dplyr Rcpp rlang stringr tibble]; }; microservices = derive2 { name="microservices"; version="0.1.2"; sha256="18inmqwdb2cz0i0q9rh7mm3bi0hg193kkipbzhgk0bk8i8gkdy84"; depends=[config desc dplyr glue purrr withr]; }; - microsimulation = derive2 { name="microsimulation"; version="1.3.5"; sha256="0fg3b1jq3igv6y76d97wjzwy7gxscbislfiv7kpc694i32hphygz"; depends=[ascii BH Rcpp]; }; + microsimulation = derive2 { name="microsimulation"; version="1.3.6"; sha256="0qpsjw1mfmz0rgkgvv2r36jfsb2k9smxw4sxd32fwafaiqh1fcb6"; depends=[ascii BH Rcpp]; }; microsynth = derive2 { name="microsynth"; version="2.0.31"; sha256="0wmrp9igylzp4qbvdr13r2rxfkcq9xwg8gw29j1g6kcqyq4aflds"; depends=[boot kernlab LowRankQP nleqslv pracma survey]; }; midas = derive2 { name="midas"; version="1.0.1"; sha256="1alqxk23651jnkg0xn4rpvk71z5rhvx3y0wjrgkw2qw95s7jjn72"; depends=[shiny xml2]; }; midasml = derive2 { name="midasml"; version="0.1.5-1"; sha256="1glz7v7ai9hz1yr27j3zzx0j7b959jssw4d9h1n08rdd8akir5g4"; depends=[foreach lubridate Matrix mcGlobaloptim]; }; @@ -12236,10 +12288,10 @@ in with self; { mime = derive2 { name="mime"; version="0.12"; sha256="0j9qbq9jfsp61h2d0xmb87pa2wi8nhb1h2wih7l5drf1sr8i0059"; depends=[]; }; mimi = derive2 { name="mimi"; version="0.2.0"; sha256="1ig34qd37my74nmlv3jcfrj7cnd55alxpf2flf2sssk2ws1y56xh"; depends=[data_table doParallel FactoMineR foreach glmnet rARPACK softImpute]; }; mimsy = derive2 { name="mimsy"; version="0.6.2"; sha256="01dy1fryrgq07jdfnxcnks97h0gq632dvqk7hnfs0f5fnx0k0vvf"; depends=[dplyr lubridate magrittr openxlsx]; }; - minMSE = derive2 { name="minMSE"; version="0.3.1"; sha256="0xzd2hw7ga5fi54d35vr9n3sbnp6acak27fl4lv089sn1ig6s95p"; depends=[MASS]; }; + minMSE = derive2 { name="minMSE"; version="0.5.1"; sha256="1fj6njqdc6zn73n2q60x01znwn6xlprjldwy5c13d8rd1n5shccm"; depends=[MASS Rcpp]; }; minSNPs = derive2 { name="minSNPs"; version="0.0.1"; sha256="0kj3kalr11c4jab9b5w0i2w2z0dsdmm22szgfzyrc3y2w6jdhvjw"; depends=[BiocParallel]; }; mind = derive2 { name="mind"; version="0.1.4"; sha256="0zalbxd4mbi5snidz60pdnm1bkgbp5pabwc4p3qfvix6ll863kmc"; depends=[data_table dplyr JWileymisc MASS Matrix qdap]; }; - mindr = derive2 { name="mindr"; version="1.2.3"; sha256="1slglva5ipbzj748k7rxvlw6g2iqdkvyf8qnplnzcjc2qsjljd1q"; depends=[data_tree htmlwidgets jsonlite knitr]; }; + mindr = derive2 { name="mindr"; version="1.3.2"; sha256="0nv3wripimpbi8zf1h8fkj80ibrzava36kcai9f1gl8frincafr9"; depends=[htmlwidgets knitr]; }; mineCitrus = derive2 { name="mineCitrus"; version="1.0.0"; sha256="031nfhrsc5rlqls3vyrk18lx0pd4ssdk96cmfr4ifaciz0rgv8h2"; depends=[ggplot2]; }; minerva = derive2 { name="minerva"; version="1.5.10"; sha256="03srkii3rmx40lyr050bnrxil6w0hfv5pr64k339m66ciwyka9ig"; depends=[Rcpp RcppArmadillo]; }; miniCRAN = derive2 { name="miniCRAN"; version="0.2.14"; sha256="1i1rf97m7c8x65rfy8c26l0kbl4zq7ha1f9yi413fk9jlngxajj3"; depends=[assertthat httr igraph]; }; @@ -12356,7 +12408,7 @@ in with self; { mlmRev = derive2 { name="mlmRev"; version="1.0-8"; sha256="0ln4nazhc1prnlmvhfzhx268vx3klb0xnz1nsiwh0pwyskskyzym"; depends=[lme4]; }; mlma = derive2 { name="mlma"; version="6.1-1"; sha256="1z3v00g7ji0xkpz9ri4li3r7s8g2rcp2pc1p060cwsaidizs38dr"; depends=[abind car coxme gplots lme4 survival]; }; mlmc = derive2 { name="mlmc"; version="1.0.0"; sha256="01h7w0ajyg3bccynlpbi3yjpy089wczbfbajpg6yw5v4dppw7k7a"; depends=[ggplot2 Rcpp]; }; - mlmi = derive2 { name="mlmi"; version="1.1.0"; sha256="09c4gxbi561ms30nhjjvmw94l1hzh6j64gp9cq4c5zf2f0fsgzyc"; depends=[cat gsl MASS Matrix mix nlme norm]; }; + mlmi = derive2 { name="mlmi"; version="1.1.1"; sha256="0ksx5qih54ww983ycs08hhr50ms2c2k6pk07mrcwdgli7irzc2cc"; depends=[cat gsl MASS Matrix mix nlme norm]; }; mlmm_gwas = derive2 { name="mlmm.gwas"; version="1.0.6"; sha256="14xp8k7sww1skyw5l2006gpaw2c6yrri5nmfx4yav4vqdlhcj2k1"; depends=[coxme Matrix multcomp multcompView sommer]; }; mlmmm = derive2 { name="mlmmm"; version="0.3-1.2"; sha256="1m5ziiqs3ll1xjm1yf7x4sdc910jypn3kjnbadf95xxkvqmfrsqq"; depends=[]; }; mlogit = derive2 { name="mlogit"; version="1.1-1"; sha256="0hyi6gi03n895iydrfr1ba2ifbsd6lyjyhkq62d95ghhniysjgkg"; depends=[dfidx Formula lmtest MASS Rdpack statmod zoo]; }; @@ -12364,21 +12416,22 @@ in with self; { mlpack = derive2 { name="mlpack"; version="3.4.2.1"; sha256="0fqpajcmqn9rijzjg7qj0zd2lik4xmhp5dmhbm3mdc9ssdg0axbr"; depends=[BH Rcpp RcppArmadillo RcppEnsmallen]; }; mlquantify = derive2 { name="mlquantify"; version="0.1.5"; sha256="00fxsg5p1fv1x102gz4541swinbc3c592qlfp123hy25h4bgdarj"; depends=[caret randomForest]; }; mlr = derive2 { name="mlr"; version="2.19.0"; sha256="04v1br59ykzhzaiybjyyknbrc7ai5nl5l106b7482r49afscjj8i"; depends=[backports BBmisc checkmate data_table ggplot2 parallelMap ParamHelpers stringi survival XML]; }; - mlr3 = derive2 { name="mlr3"; version="0.12.0"; sha256="0nimwczsgrj29r9qrlz32qc3fkj02369zql7jhkrn3lk3mfy5zmz"; depends=[backports checkmate data_table future future_apply lgr mlbench mlr3measures mlr3misc palmerpenguins paradox parallelly R6 uuid]; }; + mlr3 = derive2 { name="mlr3"; version="0.13.0"; sha256="1729wbdp62cjjk775qxrahyskp191s9qqnmqbxncfjrpdxphxk34"; depends=[backports checkmate data_table future future_apply lgr mlbench mlr3measures mlr3misc palmerpenguins paradox parallelly R6 uuid]; }; mlr3benchmark = derive2 { name="mlr3benchmark"; version="0.1.3"; sha256="0j56l8yi1c0sa3fsychrvv42rpip2d300yccps0bj636c5r7na64"; depends=[checkmate data_table ggplot2 mlr3misc R6]; }; mlr3cluster = derive2 { name="mlr3cluster"; version="0.1.2"; sha256="15sbxpp3lawh30dh3hznig12xp68p83p4rz6si6b6jjddcgsw3rq"; depends=[backports checkmate clue clusterCrit data_table mlr3 mlr3misc paradox R6]; }; mlr3data = derive2 { name="mlr3data"; version="0.5.0"; sha256="1bck1rsnp4a9bkzyjrdxn1n12lkgkj0gwiwxrf9maj0l8x3kfpyw"; depends=[]; }; - mlr3db = derive2 { name="mlr3db"; version="0.4.1"; sha256="0b1488iw4hismhirylf4qi9pn6qwh8125pxkd5fds5l50wc5m59l"; depends=[backports checkmate data_table digest mlr3 mlr3misc R6]; }; + mlr3db = derive2 { name="mlr3db"; version="0.4.2"; sha256="17gahnzhraixxxmyinsh1pnrsfqy5kznw5ynfcwyrzpbinx4drih"; depends=[backports checkmate data_table mlr3 mlr3misc R6]; }; mlr3filters = derive2 { name="mlr3filters"; version="0.4.2"; sha256="1xlyj7ai230pmcqgyj2zkhqjw819fy88b3ismc4hnq7gwkp0z360"; depends=[backports checkmate data_table mlr3 mlr3misc paradox R6]; }; mlr3fselect = derive2 { name="mlr3fselect"; version="0.6.0"; sha256="1xzwzxffa4lwdmpqrg05vgj4pfr3rph5zq4123ssjn5b5396shiz"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc mlr3pipelines paradox R6]; }; mlr3hyperband = derive2 { name="mlr3hyperband"; version="0.2.0"; sha256="0jdgmnxq1f9h7zlhdrafs21r80216lwfgd450swm7p4ibnd93fy4"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc mlr3tuning paradox R6]; }; - mlr3learners = derive2 { name="mlr3learners"; version="0.5.0"; sha256="1gkbbn5ah2iv4pv5q2jf4lrqkga744d4y9jlyhyjqf0x75y9wkg2"; depends=[checkmate data_table mlr3 mlr3misc paradox R6]; }; + mlr3learners = derive2 { name="mlr3learners"; version="0.5.1"; sha256="1yc3mrk1b9h1k342wnw7sm4zmcw7w31l5ybh558g88f5hmibdl98"; depends=[checkmate data_table mlr3 mlr3misc paradox R6]; }; mlr3measures = derive2 { name="mlr3measures"; version="0.4.0"; sha256="1qlqfan5akz42zwkcz3ncln6rd9c302dy4cyp7nx0jcafr5i459f"; depends=[checkmate PRROC]; }; - mlr3misc = derive2 { name="mlr3misc"; version="0.9.4"; sha256="14lcpvxrrl68l3khmy5r266b7yjjlg97pz4xvha0ypx8hlpbqik2"; depends=[backports checkmate data_table digest R6]; }; + mlr3misc = derive2 { name="mlr3misc"; version="0.9.5"; sha256="1ax1mvnm8xjcskq12x63jkal766v1zwilpgrkdv6yawd7yrww4q9"; depends=[backports checkmate data_table digest R6]; }; mlr3oml = derive2 { name="mlr3oml"; version="0.5.0"; sha256="1w4hjzzmy968mzgyg6ybcpq09n9zkhiwi2ccm41rvwaysl27rgfd"; depends=[backports checkmate curl data_table jsonlite lgr mlr3 mlr3misc R6 stringi]; }; - mlr3pipelines = derive2 { name="mlr3pipelines"; version="0.3.6-1"; sha256="00v39y50krmjbmk63j7kc8zgdkwi2m4l6r7j5913ghiy9f9394wc"; depends=[backports checkmate data_table digest lgr mlr3 mlr3misc paradox R6 withr]; }; + mlr3pipelines = derive2 { name="mlr3pipelines"; version="0.4.0"; sha256="0913f67c1r9bi68gxh1prsp0vch21bl6plahnvjrlbq8rrs1sr6p"; depends=[backports checkmate data_table digest lgr mlr3 mlr3misc paradox R6 withr]; }; mlr3proba = derive2 { name="mlr3proba"; version="0.4.2"; sha256="01k49spc52i8bnwi61b1knw0xnll4hgd489pswfdm7367yskhb2r"; depends=[checkmate data_table distr6 mlr3 mlr3misc paradox R6 Rcpp survival]; }; mlr3shiny = derive2 { name="mlr3shiny"; version="0.2.0"; sha256="0s581aqi3a3kg35db0gnsmmg62zwl5bij4vbszjhc63i3xg0ayiz"; depends=[data_table DT e1071 mlr3 mlr3learners mlr3measures plyr purrr ranger readxl shiny shinyalert shinydashboard shinyjs shinythemes shinyWidgets stringr]; }; + mlr3spatial = derive2 { name="mlr3spatial"; version="0.1.0"; sha256="14wbdgad7ajmwg7gz91gpdd5wvvrxmkzsk40vgfgbybmffz7zafb"; depends=[checkmate data_table lgr mlr3 mlr3misc R6 terra]; }; mlr3spatiotempcv = derive2 { name="mlr3spatiotempcv"; version="1.0.0"; sha256="0y04w96xk3m786aamqv9p91gqqyi19dc0shgkwlba32lkd5rqj0w"; depends=[checkmate data_table ggplot2 mlr3 mlr3misc paradox R6]; }; mlr3tuning = derive2 { name="mlr3tuning"; version="0.9.0"; sha256="0i428kdbak81j1wlwmdf9y40hqi63azhyny802ms2z04wl8lwnvs"; depends=[bbotk checkmate data_table digest lgr mlr3 mlr3misc paradox R6]; }; mlr3tuningspaces = derive2 { name="mlr3tuningspaces"; version="0.0.1"; sha256="1fr536xy23rglmy4rlk3fb7d29hb5s3vkyx530s7d8i1gwxad9xv"; depends=[checkmate data_table mlr3 mlr3misc mlr3tuning paradox R6]; }; @@ -12501,8 +12554,8 @@ in with self; { monitoR = derive2 { name="monitoR"; version="1.0.7"; sha256="1h1g0m1j13mz37xxwck4s7a0bfqvi0nrzfw60j7bkzaah8zxcc9n"; depends=[tuneR]; }; monmlp = derive2 { name="monmlp"; version="1.1.5"; sha256="19cx60csm8mnf6ksg64vlhi8wi1c7bmv9l55y9zmaljblr0kmzxf"; depends=[optimx]; }; monoClust = derive2 { name="monoClust"; version="1.2.1"; sha256="18zb4wfb09rpzzr9bc0nr71994nhgsk74s512dxlss50isvfqjqd"; depends=[cluster doParallel dplyr foreach ggplot2 permute purrr rlang stringr tibble tidyr]; }; - monobin = derive2 { name="monobin"; version="0.2.0"; sha256="1ajxh0p685p143y2wjg2gp35dvxbyq6921x3kz3znl0c1x4z6hgs"; depends=[dplyr Hmisc]; }; - monobinShiny = derive2 { name="monobinShiny"; version="0.0.9"; sha256="0cd54zqj4y8ii2m5jhn5fz77zylfds030rhf709wlmgj96s0i750"; depends=[dplyr DT monobin shiny shinydashboard shinyjs]; }; + monobin = derive2 { name="monobin"; version="0.2.1"; sha256="13261k81xpjvbjny938y124r2cqn36c93s177gbg1m0c8k4jlb4i"; depends=[dplyr Hmisc]; }; + monobinShiny = derive2 { name="monobinShiny"; version="0.1.0"; sha256="1ix376j39fby5571irf8i5bmz8i7nnvfzbvs5cv0k42dcgq93m0g"; depends=[dplyr DT monobin shiny shinydashboard shinyjs]; }; monographaR = derive2 { name="monographaR"; version="1.2.1"; sha256="09fkcw13h7dx7j5vyp48fk6yzv9n64568zf2zvmm2c008jw3gkbm"; depends=[circular maptools png raster rmarkdown sp]; }; monomvn = derive2 { name="monomvn"; version="1.9-13"; sha256="1hm5qf28bh0q7f4zcjqx1qxw3l8hzkx349c1y3nwyfg7436vff6a"; depends=[lars MASS mvtnorm pls quadprog]; }; monotone = derive2 { name="monotone"; version="0.1.0"; sha256="1091xqa88gdp64b65610mfcknyz29kb980iqbvwnmlk12csszr1w"; depends=[]; }; @@ -12530,7 +12583,7 @@ in with self; { mosqcontrol = derive2 { name="mosqcontrol"; version="0.1.0"; sha256="199rkfisagr4kfx358f8yrbls00fng0kq8siyrbfwwf8qrba9fla"; depends=[assertthat magrittr NlcOptim nloptr pracma sfsmisc]; }; mosum = derive2 { name="mosum"; version="1.2.6"; sha256="1xbh06sxvqgwqmid2x1lba43b20ma0gpw8mqgjnii51g7masb9kb"; depends=[plot3D RColorBrewer Rcpp]; }; motif = derive2 { name="motif"; version="0.5.0"; sha256="1lvybnahxg5xr1rqih1nczqgywcywnjwzdix8asgyl0ayh9fsv21"; depends=[comat philentropy Rcpp RcppArmadillo sf stars tibble]; }; - motifcluster = derive2 { name="motifcluster"; version="0.1.1"; sha256="1a123djc476hf528h68f1l1sh47ljxh23hmp8j22fypiaci1a3av"; depends=[igraph LICORS Matrix RSpectra]; }; + motifcluster = derive2 { name="motifcluster"; version="0.1.2"; sha256="11qv4289qvh7gsbcz42hdlfbrgjvb390pjyf2imdih2xd7bk48fa"; depends=[igraph LICORS Matrix RSpectra]; }; motifr = derive2 { name="motifr"; version="1.0.0"; sha256="01synariq39mzhx12jbcpwn982piakakl97sgs33xa8xrbwzcxgm"; depends=[dplyr ggplot2 ggraph igraph intergraph network purrr RColorBrewer reshape2 reticulate rlang scales tibble tidygraph]; }; motmot = derive2 { name="motmot"; version="2.1.3"; sha256="09qsyc4ifdl316kjqqkarmflpjcd0ivkhx5fzi3502anj6dxpjnq"; depends=[ape caper coda ks mvtnorm Rcpp]; }; motoRneuron = derive2 { name="motoRneuron"; version="1.0.0"; sha256="1hdsf4c1v5hfaqpi5y1v60zqq5fdmlqdvzpsq77diclp9vzdshja"; depends=[dygraphs ggplot2]; }; @@ -12619,7 +12672,6 @@ in with self; { msmtools = derive2 { name="msmtools"; version="2.0.1"; sha256="09an9bpr0gnqbglb8kj4x8bb7f5dm2lc3d01wx6dh7j1d99vrrdk"; depends=[data_table ggplot2 msm patchwork scales survival]; }; msos = derive2 { name="msos"; version="1.2.0"; sha256="1fg9q6269cckn4g6isv22k22mzglxhjxjg5npqsikmisribmr9kb"; depends=[mclust tree]; }; mssm = derive2 { name="mssm"; version="0.1.5"; sha256="0mwcbqndaczxxg9pvzpgd6j5v73pp5cplah4ss48h7sh984nbjwx"; depends=[nloptr Rcpp RcppArmadillo testthat]; }; - mssqlR = derive2 { name="mssqlR"; version="1.0.0"; sha256="0qdnm7cx9cg14vfcnkmcjqr1jpxsw8xlrbnxldvzz44mzv2n878l"; depends=[magrittr RODBC]; }; mstDIF = derive2 { name="mstDIF"; version="0.1.6"; sha256="0zhslqzvvk8wbgqvcipmzhy94awwfmkv5yfl812m8wmwgpkcqzpb"; depends=[eRm expm Matrix mirt PP scDIFtest]; }; mstR = derive2 { name="mstR"; version="1.2"; sha256="0v8cv9pswkvw0lva6jx5vavsb20dawgq83gn4rgydyhvigcl5szd"; depends=[]; }; mstate = derive2 { name="mstate"; version="0.3.2"; sha256="054dzrd5b0xjjjl7862q3aq1jwgrxbkqz7zpvbdirqsld3zksirw"; depends=[data_table lattice RColorBrewer rlang survival viridisLite]; }; @@ -12627,7 +12679,8 @@ in with self; { mstknnclust = derive2 { name="mstknnclust"; version="0.3.1"; sha256="0bg38gnaf2jjva8l2wk862ch2cpqvw7szvvvpb2bnz02fp795p3g"; depends=[igraph]; }; mstrio = derive2 { name="mstrio"; version="11.3.0.1"; sha256="1qjqxrgy2amm0ikfixkqjix3d6jzh1y3abnbzq41ibl5qiz8pjxy"; depends=[crul data_table httr jsonlite openssl R6 rstudioapi shiny shinyjs]; }; msu = derive2 { name="msu"; version="0.0.1"; sha256="1vhh9725dbywmzihnmsq1jircpn91r8227j2f76fvma9rwss90p7"; depends=[entropy]; }; - mtb = derive2 { name="mtb"; version="0.1.0"; sha256="00r9lnircps1qz1pkd6ycswwf34qsxq7c92gvlsx0vi9mn501rdl"; depends=[ggplot2 htmltools labeling scales]; }; + mt = derive2 { name="mt"; version="2.0-1.18"; sha256="11a01ji5vniz82y56wpdv5j10kfp9c982lhdl0d8xnqkw4xgw06b"; depends=[class e1071 ellipse lattice latticeExtra MASS pls randomForest]; }; + mtb = derive2 { name="mtb"; version="0.1.1"; sha256="1ncisrv738s0ddripji02pyykkb1h25z5dpn5asqgjp0qp5611qv"; depends=[ggplot2 htmltools labeling scales]; }; mtconnectR = derive2 { name="mtconnectR"; version="1.2.1"; sha256="0hl46h535mjqwgrhmxlixhfsych3blzcynffp55nr1ynrra4dn06"; depends=[data_table dplyr dtw ggplot2 lubridate magrittr plyr proxy stringr tidyr XML]; }; mthapower = derive2 { name="mthapower"; version="0.1.1"; sha256="0g6dn0qn7z6qc1gbzspy1n7b803427bc9fv5yqk7j8i1is1p8h94"; depends=[]; }; mtk = derive2 { name="mtk"; version="1.0"; sha256="0vq2xlxf86l92fl91qm8m4yfjyz1h8szmwxiics7sc9f0as0dkmy"; depends=[lhs rgl sensitivity stringr XML]; }; @@ -12687,7 +12740,6 @@ in with self; { multilevel = derive2 { name="multilevel"; version="2.6"; sha256="19zrvpq23dn69d7kai1rgw5b8ibmgybnbg6isliq0n8bv9jvrzia"; depends=[MASS nlme]; }; multilevelPSA = derive2 { name="multilevelPSA"; version="1.2.5"; sha256="0926jaicdxk846vyfphb2hyg3zan3wal44x1bwamws0zf4flc4hj"; depends=[ggplot2 MASS party plyr PSAgraphics psych reshape xtable]; }; multilevelTools = derive2 { name="multilevelTools"; version="0.1.1"; sha256="01fzx7j0mkb4fr7axv34184w6w5nfsdcr51nscci1mi5b2805x1s"; depends=[cowplot data_table extraoperators ggplot2 JWileymisc lavaan lme4 lmerTest nlme zoo]; }; - multilinguer = derive2 { name="multilinguer"; version="0.0.4"; sha256="0kavgvbzv8bvv9qlr92j8mx7b802w513mqalrdyln0pw36c9i13x"; depends=[askpass fs rstudioapi rvest sys usethis xml2 zip]; }; multimark = derive2 { name="multimark"; version="2.1.3"; sha256="13arvjxfnxq7dr5r8cqwxxkravwwf4dq5hq263ss353fdi2qv4i0"; depends=[Brobdingnag coda Matrix mvtnorm prodlim raster RMark sp statmod]; }; multimode = derive2 { name="multimode"; version="1.5"; sha256="0qxb67qss2pmid0wiwblqng5qmihqchdhbkyjklgj20pvbjz1wjm"; depends=[diptest ks rootSolve]; }; multimorbidity = derive2 { name="multimorbidity"; version="0.5.0"; sha256="1x4869pqckldx6g4zhawjbin03glkxzfszb4qiq7yy2xi444jkl0"; depends=[devtools dplyr lubridate magrittr rlang sqldf stringr tidyr tidyselect tidyverse]; }; @@ -12742,7 +12794,7 @@ in with self; { mvPot = derive2 { name="mvPot"; version="0.1.5"; sha256="18kzlz42ridmwjrai6f598vvhmvk7gwyp869qjqclbf9jpc1xlcx"; depends=[evd gmp MASS numbers]; }; mvProbit = derive2 { name="mvProbit"; version="0.1-10"; sha256="1iy249mc5fi72l0lcvjrn40fn6q1m8hj8njcl0li2z6lzydifkd4"; depends=[abind bayesm maxLik miscTools mvtnorm]; }; mvQuad = derive2 { name="mvQuad"; version="1.0-6"; sha256="016477dhjdkqiadc631vzpbp967mn4yli6by3s1k348mlfirwsi3"; depends=[data_table statmod]; }; - mvSLOUCH = derive2 { name="mvSLOUCH"; version="2.7.2"; sha256="0c8gf6rv5ycw6yh73zs3f76j6x3lblpwn2rswgi3mmjh073ij7ay"; depends=[abind ape Matrix matrixcalc mvtnorm ouch PCMBase TreeSim]; }; + mvSLOUCH = derive2 { name="mvSLOUCH"; version="2.7.3"; sha256="1f048j48mv654n8yswvlj9q4rr2kpyi4b4mibg28cspayidq9yyc"; depends=[abind ape Matrix matrixcalc mvtnorm ouch PCMBase TreeSim]; }; mvShapiroTest = derive2 { name="mvShapiroTest"; version="1.0"; sha256="0zcv5l28gwipkmymk12l4wcj9v047pr8k8q5avljdrs2a37f74v1"; depends=[]; }; mvabund = derive2 { name="mvabund"; version="4.1.12"; sha256="107pwv2bwird1a98chcnbld2wqj9prkf4pkncyrrp304zpdkkby1"; depends=[MASS Rcpp RcppGSL statmod tweedie]; }; mvbutils = derive2 { name="mvbutils"; version="2.8.232"; sha256="0awd0jy492ha321c20kmmgl20kqphdmrmswakc0rq6h8z9d55kdg"; depends=[]; }; @@ -12773,7 +12825,6 @@ in with self; { mwTensor = derive2 { name="mwTensor"; version="0.99.5"; sha256="11zn2g1gxl1x6ci3wqkr7a37jwc4rdcbgdagy5gf3jgkmmr5an3w"; depends=[ccTensor ica igraph MASS nnTensor rTensor]; }; mwa = derive2 { name="mwa"; version="0.4.3"; sha256="100d3c1070ir64iv848kws5fna141gcq5p66ip873cr632a042qs"; depends=[cem MASS rJava]; }; mwaved = derive2 { name="mwaved"; version="1.1.8"; sha256="092sqd9harx289bgghw9x495llzhab0vkgkjka5jhi4ad1rfk3vh"; depends=[Rcpp shiny]; }; - mwcsr = derive2 { name="mwcsr"; version="0.1.0"; sha256="0v0c5mlxfy804zp6ykjjn6rhz5ji1h3vnm97cwpdr0r016nvvr9j"; depends=[igraph Rcpp]; }; mwshiny = derive2 { name="mwshiny"; version="2.1.0"; sha256="0c1a0d9qnaszffhzanmk31mdxqi7j3rn6bk7a3dwg4bq1da3rlgl"; depends=[htmltools shiny]; }; mxkssd = derive2 { name="mxkssd"; version="1.1"; sha256="0m9763dqrk8qkrvp18bsv96jv0xhc2m8sbxdk6x3w6kdjcl663p2"; depends=[]; }; mxmmod = derive2 { name="mxmmod"; version="1.1.0"; sha256="0x4m6y4ngb3vm9xpvwvn1zcbch2fhz8pb267hg2sb3kk5m504xxq"; depends=[OpenMx]; }; @@ -12807,7 +12858,7 @@ in with self; { naniar = derive2 { name="naniar"; version="0.6.1"; sha256="0l3l2x85v3srilww483kpgp4zlwixyml257b0cqly8kcpwawlinm"; depends=[dplyr forcats ggplot2 glue magrittr norm purrr rlang tibble tidyr UpSetR viridis visdat]; }; nanop = derive2 { name="nanop"; version="2.0-6"; sha256="007gdc93pk0vpfmsw7zgfma2k1045n2cxwwsyy276smy0ys9fdhp"; depends=[distrEx rgl]; }; nanostringr = derive2 { name="nanostringr"; version="0.2.0"; sha256="13rcc33zfqlx8m5bmr5hh87gp0g5wlg2cwlj1683kw9adj2y3fdf"; depends=[assertthat ccaPP dplyr epiR magrittr purrr rlang]; }; - nanotime = derive2 { name="nanotime"; version="0.3.3"; sha256="1q3xh7im77h70nyj7sl2rqzj4kcvwh27l9y9x36xyps7r6i8xfbi"; depends=[bit64 Rcpp RcppCCTZ RcppDate zoo]; }; + nanotime = derive2 { name="nanotime"; version="0.3.4"; sha256="1ylj79fs45l1d8ijlllja543ggbq613yskvnhql4davki98gdhg1"; depends=[bit64 Rcpp RcppCCTZ RcppDate zoo]; }; naptime = derive2 { name="naptime"; version="1.3.0"; sha256="1cadfv5sdsmz61kf96hf2gbnghf24q40g5c3h9b8prvkxslap691"; depends=[lubridate]; }; nardl = derive2 { name="nardl"; version="0.1.6"; sha256="1vf8im4zs4j0v3k617aaskq9n2fg8sn3j5bllcbz2ircrpijr21m"; depends=[car Formula gtools MASS strucchange tseries]; }; narray = derive2 { name="narray"; version="0.4.1.1"; sha256="1xyyn6v3khk5x759fr9h96z036hbb87fzfqgdpw907bc95gjnkz9"; depends=[progress stringr]; }; @@ -12836,7 +12887,7 @@ in with self; { ncappc = derive2 { name="ncappc"; version="0.3.0"; sha256="0bf00iskrd3x43839bwn957mi3qvm2dhcmqa7hl1ib0gp2r1cnzx"; depends=[bookdown Cairo dplyr ggplot2 gridExtra gtable knitr lazyeval magrittr PopED purrr readr reshape2 rlang rmarkdown scales tibble tidyr xtable]; }; ncar = derive2 { name="ncar"; version="0.4.4"; sha256="1b37isgj7njpyh3js2kyl6vil9v8azh7n04m5yn4pcvyz02sqkx8"; depends=[NonCompart rtf]; }; ncbit = derive2 { name="ncbit"; version="2013.03.29"; sha256="0f07h8v68119rjvgm84b75j0j7dvcrl6dq62vp41adlm2hgjg024"; depends=[]; }; - ncdf4 = derive2 { name="ncdf4"; version="1.17.1"; sha256="1fyjhp2zkvp7ls1sxn623far7473lpkfsqqvj3a1fczpmqs6iw4m"; depends=[]; }; + ncdf4 = derive2 { name="ncdf4"; version="1.18"; sha256="0yfvway6rnjkhr46d9313l4k5r9hc025nq948lx715mlrsnqns51"; depends=[]; }; ncdf4_helpers = derive2 { name="ncdf4.helpers"; version="0.3-6"; sha256="0qnm41rbxb6v7aqh1mdkjhcc2rhs4wg6wmrllldzd99mzz8slv1r"; depends=[abind ncdf4 PCICt]; }; ncdfgeom = derive2 { name="ncdfgeom"; version="1.1.1"; sha256="173hfbvp6pzyxmy0xwir02nmhifmfzl6jipn5pp41c947gyg8vwx"; depends=[dplyr ncmeta RNetCDF sf]; }; ncdump = derive2 { name="ncdump"; version="0.0.3"; sha256="09g98mzpky32z41jf23ahzhyv34l34y1gqq99j2hl4pqlvvhxs9i"; depends=[dplyr ncdf4]; }; @@ -12880,7 +12931,7 @@ in with self; { netcontrol = derive2 { name="netcontrol"; version="0.1"; sha256="1gskb728ycnhz9a9g9ghm0dz3ajf3dzgyv23bsk9i01wj9hrxhc0"; depends=[expm MASS Matrix pracma Rcpp RcppArmadillo Rdpack]; }; netdiffuseR = derive2 { name="netdiffuseR"; version="1.22.3"; sha256="1vb3ql37fh5104ks65i03mz7ka1xk1rb8xnm2wxd654khkwjcp0m"; depends=[boot igraph MASS MatchIt Matrix network networkDynamic Rcpp RcppArmadillo sna SparseM viridisLite]; }; netgen = derive2 { name="netgen"; version="1.3.2"; sha256="1yqi4rb6w9ipxgbl1j1s2s81cg7nzrn65irn5gs82hsq94d6vv2j"; depends=[BBmisc checkmate ggplot2 igraph lhs mvtnorm stringr]; }; - netgsa = derive2 { name="netgsa"; version="4.0.1"; sha256="1j7j48snlkv3islwl4fab037d3h38ar5wsalr9jbxcng4bac8fqg"; depends=[AnnotationDbi corpcor data_table dplyr genefilter glassoFast glmnet graph graphite httr igraph jsonlite magrittr Matrix msigdbr ndexr org_Hs_eg_db quadprog Rcpp RcppEigen RCy3 reshape2 rlang]; }; + netgsa = derive2 { name="netgsa"; version="4.0.2"; sha256="0v26a29dpgim993g43jwz4666jf7dnvli89czn2bynclb3jz69k8"; depends=[AnnotationDbi corpcor data_table dplyr genefilter glassoFast glmnet graph graphite httr igraph jsonlite magrittr Matrix msigdbr ndexr org_Hs_eg_db quadprog Rcpp RcppEigen RCy3 reshape2 rlang]; }; netgwas = derive2 { name="netgwas"; version="1.13"; sha256="156axkl61z0s3zm8plkcc3s46x0881mqnk94azl3p0nphblhmhcv"; depends=[glasso huge igraph MASS Matrix qtl RBGL tmvtnorm]; }; netie = derive2 { name="netie"; version="1.0"; sha256="0ja59rfg576z8rbv073aaab32qazlrqhvyvxpssibwsvbfcrhklm"; depends=[]; }; netjack = derive2 { name="netjack"; version="1.2.0"; sha256="060ygb0kxi0gx1ya38cmf5hhyy6jkwq5519azdqhq5i324cwzzm7"; depends=[brainGraph ggplot2 igraph Rdpack]; }; @@ -12914,7 +12965,7 @@ in with self; { neurohcp = derive2 { name="neurohcp"; version="0.9.0"; sha256="02z0lhmw2mr2fk8d8wp7nfcrfl8izds68zskm5j0xfabfb4dwkbx"; depends=[aws_s3 base64enc digest httr xml2]; }; neuroim = derive2 { name="neuroim"; version="0.0.6"; sha256="00cjr6pkip6zi2d0q3qbn3lb3k0z82v6c19qslvgpa9n0g63dr5p"; depends=[abind assertthat hash iterators Matrix Rcpp readr rgl stringr yaImpute]; }; neuromplex = derive2 { name="neuromplex"; version="1.0-1"; sha256="1zj7x528qv4bp24fx546jj9kf0q0n26jyi65v6h2bl3c61rrb6bz"; depends=[BayesLogit dplyr ggplot2 gridExtra magrittr tidyr]; }; - neuronorm = derive2 { name="neuronorm"; version="1.0.0"; sha256="01j8bzs8jbklsjm9krsv5jkfaardhq5apfgr5bc11ry9xbwzz3b0"; depends=[fslr knitr neurobase oro_nifti]; }; + neuronorm = derive2 { name="neuronorm"; version="1.0.1"; sha256="09sd73a5xr1id37b3rkmv8v4f67wjwac9k3j1q5ssgkpq92kg50k"; depends=[fslr knitr neurobase oro_nifti]; }; neutralitytestr = derive2 { name="neutralitytestr"; version="0.0.3"; sha256="1660v7nng6dj9gwn04ynirms0g10wpsz33i26va229zdviqm5cyy"; depends=[cowplot dplyr ggplot2 ggpmisc pracma scales]; }; nevada = derive2 { name="nevada"; version="0.1.0"; sha256="0z1wi3769204cgi6hk13nnm6z6nx3dlx334mbs13r7p5rhmf794g"; depends=[cli dplyr flipr forcats ggplot2 igraph magrittr purrr Rcpp RcppArmadillo rlang tibble tidyr withr]; }; neverhpfilter = derive2 { name="neverhpfilter"; version="0.4-0"; sha256="097nfz30pf4bd95l943ccsvndni0n8c6gpcdk5dv02802mcg0h81"; depends=[xts zoo]; }; @@ -12924,6 +12975,7 @@ in with self; { newscatcheR = derive2 { name="newscatcheR"; version="0.1.0"; sha256="0rm91dfzfjhi51gk65gvq2z7aywg6y8ay3hrjnp6frlmyvh661sp"; depends=[tidyRSS]; }; newsmap = derive2 { name="newsmap"; version="0.7.4"; sha256="1k7jbfz3hrpy8z3zfn0gcm9fzmfiaf3qkx1m89c5q072zpdpiajn"; depends=[Matrix quanteda quanteda_textstats stringi]; }; newsmd = derive2 { name="newsmd"; version="0.3.1"; sha256="0xgrxz0ppvja4avff2l4kjnbw90ynbrziih0iqfjsvnvy92msalg"; depends=[R6]; }; + nfer = derive2 { name="nfer"; version="1.0.1"; sha256="1dbvadpfgwanfdc9kvm620r5nj7l9kvbbhfcg80z5jbdn38jgh3r"; depends=[]; }; nfl4th = derive2 { name="nfl4th"; version="1.0.1"; sha256="11hk9446ckhg46dzkbvd12n6k02m6qx265spwqdm23xpncamjlkk"; depends=[dplyr glue httr janitor jsonlite magrittr mgcv nflfastR nflreadr purrr stringr tibble tidyr tidyselect xgboost]; }; nflfastR = derive2 { name="nflfastR"; version="4.3.0"; sha256="1vg27m51q01m6rypaksr5dw7qg3i638dypm31v5gimbdkjmgs2j7"; depends=[cli curl dplyr fastrmodels furrr future glue janitor lifecycle mgcv nflreadr progressr rlang stringr tibble tidyr tidyselect xgboost]; }; nflreadr = derive2 { name="nflreadr"; version="1.1.1"; sha256="0icwsyk675s5ckgwrl73v4d1y0n43fgsmaibhkmvv7b6ric9n5b0"; depends=[cachem curl data_table memoise qs rappdirs Rcpp RcppParallel rlang]; }; @@ -12950,6 +13002,7 @@ in with self; { nilde = derive2 { name="nilde"; version="1.1-4"; sha256="1zw952sqqxcxniyi7s0901xzqqpxqxdbisab9f3rv1i3kikcaa60"; depends=[]; }; nima = derive2 { name="nima"; version="0.6.2"; sha256="0n8r8h1m0v0ssbpv6p32jby49f45qbicwr0awm7x054p48qk49cy"; depends=[assertthat dplyr ggplot2 ggthemes gridExtra gtools scales]; }; nimble = derive2 { name="nimble"; version="0.12.1"; sha256="1n37g22wj5zlvb8lgxh9gi7mk011lyrmg3kaibhcpj2858hz681m"; depends=[coda igraph R6]; }; + nimbleAPT = derive2 { name="nimbleAPT"; version="1.0.4"; sha256="0615fm6sa6nf607ay98r81m0pp8yvydpwzn3972imf87irps2k3l"; depends=[nimble]; }; nimbleCarbon = derive2 { name="nimbleCarbon"; version="0.1.2"; sha256="1cj1yik4knxniag12qr8hqxkqhcm5lhq8xw7g8iibv3rxq0jvkki"; depends=[coda doSNOW foreach nimble rcarbon snow]; }; nimbleEcology = derive2 { name="nimbleEcology"; version="0.4.1"; sha256="1z4byxsana1fa2y7qhmiqbb8ana6zbas0cmbgcc703mqh1642jb2"; depends=[nimble]; }; nimbleSCR = derive2 { name="nimbleSCR"; version="0.1.3"; sha256="1859qai1cyh82cxa8kccrn36flw045j4dggzixi2m3k029gvjh15"; depends=[nimble]; }; @@ -13020,8 +13073,8 @@ in with self; { noaaoceans = derive2 { name="noaaoceans"; version="0.3.0"; sha256="0pxsddzkrprzjch173shhmd7c2h6rh5xzs3n5bbs97l51ni8m60m"; depends=[httr jsonlite rvest xml2]; }; noaastormevents = derive2 { name="noaastormevents"; version="0.2.0"; sha256="1d93h8av0bbv7a56g6m000qpsnzqpfdla0fmcj5y8fbbqkipxnfr"; depends=[choroplethr choroplethrMaps data_table dplyr forcats ggplot2 hurricaneexposure lubridate magrittr maps plyr RColorBrewer RCurl rlang stringr tibble tidyr viridis XML]; }; noah = derive2 { name="noah"; version="0.1.0"; sha256="1ln23lp4c70fin9sjjhm4ngy47f8sk2mcljp5q449b7hq8gqi12c"; depends=[assertthat crayon digest dplyr hash magrittr purrr R6 rlang stringr]; }; - noctua = derive2 { name="noctua"; version="2.3.0"; sha256="1py32s0qjya3rb6znx8vrlvc8bpqijchcc6dbyr53w8xfikiyd4i"; depends=[data_table DBI paws uuid]; }; - nodbi = derive2 { name="nodbi"; version="0.4.3"; sha256="03vb11iryhx18jdj4sbmh50l9h39pkzdp9d33117pbfvr61pzx32"; depends=[data_table jsonlite]; }; + noctua = derive2 { name="noctua"; version="2.4.0"; sha256="1dzpa7ksf3mj97mhsxzigppcsjwxzr9x8rc0b13hcsjgawxlq5f1"; depends=[data_table DBI paws uuid]; }; + nodbi = derive2 { name="nodbi"; version="0.5.1"; sha256="009rzpgjgmajns9cz55bjvxdvp852rk9h4wd61x18wm6bfw17d0n"; depends=[DBI elastic jqr jsonify jsonlite mongolite RSQLite sofa stringi uuid]; }; node2vec = derive2 { name="node2vec"; version="0.1.0"; sha256="03gfpn4xgmdwlrpwi9pdpnh6k75mwp85j6vywkj0jsxhz3rbg95g"; depends=[data_table dplyr igraph rlist vctrs vegan word2vec]; }; nodeHarvest = derive2 { name="nodeHarvest"; version="0.7-3"; sha256="0nh3g50rk9qzrarpf29kijwkz9v60682i0ag77j2ipyvhhbpwpkc"; depends=[quadprog randomForest]; }; nodeSub = derive2 { name="nodeSub"; version="1.2"; sha256="06yk8kk959grnmvnhqj7z7k02ykxr04mrz63k8ppbmwb4q60q5nv"; depends=[ape apTreeshape assertthat babette beastier beautier DDD geiger mauricer nLTT pbapply phangorn phylobase rappdirs Rcpp Rmpfr RPANDA stringr testit tibble tracerer]; }; @@ -13034,7 +13087,7 @@ in with self; { noisyr = derive2 { name="noisyr"; version="1.0.0"; sha256="05nvxz5qa4lsi62va74yq4m68nlacjkl8xj5nsq7dik3357y53dr"; depends=[doParallel dplyr foreach GenomicRanges ggplot2 IRanges magrittr philentropy preprocessCore Rsamtools tibble]; }; nombre = derive2 { name="nombre"; version="0.4.0"; sha256="0bc66vc8xxg8q2x7nh4si04qgb2gxzl61jf4k10vc6v8dsglk77k"; depends=[fracture]; }; nomclust = derive2 { name="nomclust"; version="2.5.0"; sha256="17vqxbx5bpja2fxp83w0sbgbs61b2vaak9zzvvxkicxqwk09ix2v"; depends=[cluster Rcpp]; }; - nominatimlite = derive2 { name="nominatimlite"; version="0.1.4"; sha256="0kcmhfvslvffm7scv8na8z9l9jyzayy7bwgbzgjyqk21b9rcigc2"; depends=[dplyr jsonlite sf tibble]; }; + nominatimlite = derive2 { name="nominatimlite"; version="0.1.5"; sha256="0x3vaidx7w5v0713ddsj3dgczf788dpq7irjl63ihslvd4ncr6ba"; depends=[dplyr jsonlite rlang sf tibble]; }; nomisr = derive2 { name="nomisr"; version="0.4.4"; sha256="1qa7k4fh7n2imf91nfcdg32dacraay343jv9sczs6qc37nadhdbg"; depends=[dplyr httr jsonlite readr rlang rsdmx snakecase tibble]; }; nomnoml = derive2 { name="nomnoml"; version="0.2.3"; sha256="08zraip0v4jc51zv2zsvka6k8d1ry2ac9d70xpavfggbgmrmz987"; depends=[htmlwidgets lifecycle png rlang webshot]; }; nomogramEx = derive2 { name="nomogramEx"; version="3.0"; sha256="16235rwblnzn8k53817llwy2pzhnpifh6ij159nxymjm8ar9qpbp"; depends=[pracma rms]; }; @@ -13051,6 +13104,7 @@ in with self; { nonnest2 = derive2 { name="nonnest2"; version="0.5-5"; sha256="1ddaqwx8i3ygwvxf11mc8xhgk4nkvnail99nr5szq8i168752zq2"; depends=[CompQuadForm lavaan mvtnorm sandwich]; }; nonpar = derive2 { name="nonpar"; version="1.0.2"; sha256="0gflldd3kjbpdlvbwi073igj6shcqr9g5x6zcp5gfa12404qpflq"; depends=[]; }; nonparaeff = derive2 { name="nonparaeff"; version="0.5-8"; sha256="1kkn68m7cqlzx3v539cjxw3x5a2y86lvmyv2k98s87m3yvqg0gdk"; depends=[gdata geometry Hmisc lpSolve psych pwt rms]; }; + nonparametric_bayes = derive2 { name="nonparametric.bayes"; version="0.0.1"; sha256="1acrjh0fcr15b9k2hpg0ihfav0w2lzjdpjyayz3f4hx596j32vi8"; depends=[mvtnorm progress]; }; nontarget = derive2 { name="nontarget"; version="1.9"; sha256="0ndqcr73sja5ks5kdahhakpz9lw3rp26imklagdv4f5agqnb608s"; depends=[enviPat mgcv nontargetData]; }; nontargetData = derive2 { name="nontargetData"; version="1.1"; sha256="07cdbpmn64sg4jfhljdcx503d55azyz58x7nkji044z3jmdryzqw"; depends=[]; }; nopaco = derive2 { name="nopaco"; version="1.0.6"; sha256="0q705b7bjzq0b6vfp6yargybc8h07adx8al1ip7pxkmfcpilj66v"; depends=[Matrix]; }; @@ -13079,7 +13133,7 @@ in with self; { np = derive2 { name="np"; version="0.60-11"; sha256="1a9kzn37cddwfdki5zjmzanxp75pccdjnsvqfrh84hhcsy51pcx3"; depends=[boot cubature quadprog quantreg]; }; npExact = derive2 { name="npExact"; version="0.2"; sha256="055wm5lcj98wb71lqp2zdyl8kkwvi6lwmnaylynvr907xqabaqvd"; depends=[]; }; npIntFactRep = derive2 { name="npIntFactRep"; version="1.5"; sha256="14ms66ppzb4jjsa3fparic6gdn913f6wv2ccjyb02j1ahs4iaa4g"; depends=[ez plyr]; }; - npROCRegression = derive2 { name="npROCRegression"; version="1.0-5"; sha256="09ngfj0bd9cp19lpwsbknp2y71x36k03ph84bmf67wm1q2na7f93"; depends=[lattice]; }; + npROCRegression = derive2 { name="npROCRegression"; version="1.0-6"; sha256="122sy722wbslmd0yq5gc9zs87ng45zlwcsfvl962czk3yncrn1bv"; depends=[lattice]; }; nparACT = derive2 { name="nparACT"; version="0.8"; sha256="0zwhz52j526n3xd21s7kghjaby56a8g296bkkc6scaa23zn1xg4b"; depends=[ggplot2 stringr zoo]; }; nparLD = derive2 { name="nparLD"; version="2.1"; sha256="1asq00lv1rz3rkz1gqpi7f83p5vhzfib3m7ka1ywpf2wfbfng27n"; depends=[MASS]; }; nparMD = derive2 { name="nparMD"; version="0.1.0"; sha256="0kxbcykc01b1c68hk3akfhs9xzmshxvjvhm69k4j1c4nvpz8y9z9"; depends=[Formula gtools MASS matrixcalc matrixStats]; }; @@ -13100,6 +13154,7 @@ in with self; { npmv = derive2 { name="npmv"; version="2.4.0"; sha256="04lfks2rlax59gxdnbgkpmk2vaax718z6hkgsvmyxf52iby6rvlr"; depends=[Formula]; }; npordtests = derive2 { name="npordtests"; version="1.2"; sha256="1axzcyy45h3rs67m0i3cvwbmza1mnmraxan9j4zlpxdd5x9nz4h8"; depends=[]; }; nppbib = derive2 { name="nppbib"; version="1.2-0"; sha256="1nn6wf89jhr3gy4rcd6px0cd5b1bsr7pbaxng4adba8n3yrss7vs"; depends=[]; }; + npphen = derive2 { name="npphen"; version="1.1.1"; sha256="0xfsi6y4233gwslrh86chfpc71fdp5pfh4v9c9qcjqaib9hxvixn"; depends=[ks lubridate raster rgdal snow]; }; nprcgenekeepr = derive2 { name="nprcgenekeepr"; version="1.0.5"; sha256="1j6pfc694yf1m42a0fhlbh5wdbmgs61fswbw7083h69d2sr2zq05"; depends=[anytime futile_logger htmlTable lubridate Matrix plotrix readxl Rlabkey rlang shiny stringi WriteXLS]; }; npreg = derive2 { name="npreg"; version="1.0-6"; sha256="0a28hj4a8j46zyh483y4b5abwy18yl648rf99nj8a2blhdmipyla"; depends=[]; }; npregderiv = derive2 { name="npregderiv"; version="1.0"; sha256="1k873cs3rs15l13z8017n4anacandx7di6yk1zlamcc5p3vlh59n"; depends=[]; }; @@ -13150,6 +13205,7 @@ in with self; { nzilbb_labbcat = derive2 { name="nzilbb.labbcat"; version="1.0-1"; sha256="0lypdwyvihza88jnccvh4wapfivsjy9sgxj4hvai52bkrw92578d"; depends=[httr jsonlite rstudioapi stringr]; }; nzpullover = derive2 { name="nzpullover"; version="0.3.0"; sha256="0b3mz5i58m48fa1x7gv4l3gqj0gvrar201ph2l1gkbcnfmazwjp8"; depends=[]; }; o2geosocial = derive2 { name="o2geosocial"; version="1.1.0"; sha256="158nbc45h4k677lgx9n976d9kz7hy8fb7z5s2v6pmkmh521jdn2a"; depends=[data_table geosphere ggplot2 outbreaker2 Rcpp visNetwork]; }; + o2plsda = derive2 { name="o2plsda"; version="0.0.12"; sha256="1rm57bnmzqz86yfbz2wnn6xfd5mr7pdbq89855hg40a59i3yhp04"; depends=[dplyr ggplot2 ggrepel magrittr Rcpp RcppArmadillo RcppEigen]; }; oRus = derive2 { name="oRus"; version="1.0.0"; sha256="0q6hgiidcpm95pyisndihxjg78v6k1zycdqd72309aankdk0g5h4"; depends=[dplyr knitr rmarkdown stringr tibble tidytext tm topicmodels xlsx]; }; oaColors = derive2 { name="oaColors"; version="0.0.4"; sha256="040sdqrk9dciylnnrrshlj06s9qhvngii9shx1p8412ip7mk8r1m"; depends=[MASS RColorBrewer]; }; oaPlots = derive2 { name="oaPlots"; version="0.0.25"; sha256="0c5ig1ar02vg38pjjmp3gd53ij1j7pzajs0zrlfajz141qkv2ysr"; depends=[ggplot2 oaColors]; }; @@ -13171,7 +13227,7 @@ in with self; { occupancy = derive2 { name="occupancy"; version="1.2"; sha256="0j50vg1405n1hp72xqsq1hp3gdbfx5yq9w1zdv6dzjc6vjhbx00d"; depends=[matrixStats]; }; ocd = derive2 { name="ocd"; version="1.1"; sha256="06pyc352pvn85k76z9797gwk0ksbb3snvh6krysp68k3lcygq872"; depends=[]; }; oce = derive2 { name="oce"; version="1.4-0"; sha256="0224fgd51fchn8apdi6x0n3ycl6zdbwch9janmidqr0i01418d1v"; depends=[gsw Rcpp sf testthat]; }; - oceanis = derive2 { name="oceanis"; version="1.7.5.2"; sha256="1ng6qlsbybnv77lbqhmzvi93ydiy99zbcgl3yszrqwnw0ld08k9j"; depends=[classInt dplyr DT ggplot2 leaflet leaflet_extras lwgeom mapview sf shiny shinyBS shinyjs shinythemes stringr units]; }; + oceanis = derive2 { name="oceanis"; version="1.8.4"; sha256="0m0mhab74wnd9hm0im47c14m5mzsrvs61d07vikd8f1sly36h943"; depends=[classInt dplyr DT ggplot2 leaflet leaflet_extras lwgeom mapview sf shiny shinyBS shinyjs shinythemes stringr zip]; }; oceanmap = derive2 { name="oceanmap"; version="0.1.1"; sha256="06h4yxqcn3rjr3m2n82w128z110a4k5rg6msrbd0gcqksxc4vd2v"; depends=[abind extrafont fields lubridate mapdata maps maptools ncdf4 plotrix raster sp]; }; oceanwaves = derive2 { name="oceanwaves"; version="0.2.0"; sha256="1v4gj4ippv1l3r77z2ic19x5zi5lpsh5wihaqay3264zhpb3kv9a"; depends=[bspec ggplot2 signal]; }; ocedata = derive2 { name="ocedata"; version="0.1.8"; sha256="01m2pflk3zgqbqmv34w7mh8bs1lbpagdmhvhzji2j6p1fysvhqr1"; depends=[testthat]; }; @@ -13195,8 +13251,8 @@ in with self; { oem = derive2 { name="oem"; version="2.0.10"; sha256="1nf9ja4l7b9gnnvv216dz9siy02432qgyg930vcrqq3l8g05r6zc"; depends=[BH bigmemory foreach Matrix Rcpp RcppArmadillo RcppEigen]; }; oenb = derive2 { name="oenb"; version="0.0.2"; sha256="1jgxw7ycx2lcdzglg9nix8k08fs4r6i5jdsjzrd6w1dg6smsinl5"; depends=[dplyr XML]; }; ofGEM = derive2 { name="ofGEM"; version="1.0"; sha256="0xdkl8k12an9pdy6i5nay4m2iakrwsp0lr3zl8gphii75j0ywz7k"; depends=[CompQuadForm forestplot MASS]; }; - officedown = derive2 { name="officedown"; version="0.2.2"; sha256="0xbkdgl14nmhl110xxvsxm3zi4120v1fhhb9gb5q3ba6wd5n245g"; depends=[knitr memoise officer rlang rmarkdown rvg uuid xml2 yaml]; }; - officer = derive2 { name="officer"; version="0.4.0"; sha256="1za3vb1wmsianh9ygm6h5lyf796rni6w2adplz4z6z93r3mz4cmv"; depends=[R6 uuid xml2 zip]; }; + officedown = derive2 { name="officedown"; version="0.2.3"; sha256="1wz3312hq5ybichb0js7jiig7y0wb1nyd2lcsk1nlq70cqsgrv4w"; depends=[knitr memoise officer rlang rmarkdown rvg uuid xml2 yaml]; }; + officer = derive2 { name="officer"; version="0.4.1"; sha256="1gfx299zr4q2264q37994pirv5bd5isn1cszccz603ij3q40wajr"; depends=[R6 uuid xml2 zip]; }; offlineChange = derive2 { name="offlineChange"; version="0.0.4"; sha256="005afrm4ki4zz3zkgrf8c1v9gf5cjhc5g50mjkqya3r8npaccwq2"; depends=[Rcpp]; }; oglmx = derive2 { name="oglmx"; version="3.0.0.0"; sha256="13axmhbqhv4kkcdsdmp9r7p0d0kyqlsaqgyyllbkxlxb4hfz79b6"; depends=[maxLik]; }; ohenery = derive2 { name="ohenery"; version="0.1.1"; sha256="0i7cc110c30y7dm86srh2xkikkmlr28mvy0kkjxywxmiwnrsmzjq"; depends=[dplyr magrittr maxLik Rcpp]; }; @@ -13230,7 +13286,7 @@ in with self; { onepass = derive2 { name="onepass"; version="0.1.2"; sha256="1r8wk00aqc0sc7l6mmy1k4hkijfikynysrx5vvahbd6mlcdb3bmp"; depends=[jsonlite]; }; onewaytests = derive2 { name="onewaytests"; version="2.6"; sha256="05q2ir65x9pvsiim4l029hjhm12niiqjgk5rsx47i6vx23ffg8ir"; depends=[car ggplot2 moments nortest]; }; onion = derive2 { name="onion"; version="1.5-0"; sha256="07q5wwphb6jsk7ya7hgsf5782yalvhyc7h43hsd9rg4rhpmy8in9"; depends=[emulator]; }; - onlineBcp = derive2 { name="onlineBcp"; version="0.1.1"; sha256="0azm3xmk4fqdzwssdx2g9k00fcz6inwv1qj4lvd0wdz6i7grya8g"; depends=[VIM]; }; + onlineBcp = derive2 { name="onlineBcp"; version="0.1.3"; sha256="1bnpl94v30h3il8flin85nsnm27z8ghscmzqj9mc3afv2rzi8kb4"; depends=[VIM]; }; onlineCOV = derive2 { name="onlineCOV"; version="1.3"; sha256="04ikvsd76f6xhja7djyv433m88lfj2vf0y9qi6x1s4i9kh8xkbz9"; depends=[]; }; onlinePCA = derive2 { name="onlinePCA"; version="1.3.1"; sha256="08qivsfnwz5vp089lv9czsaz3nfi42kn9yhgzf27dji18y2xscic"; depends=[Rcpp RcppArmadillo RSpectra]; }; onlineVAR = derive2 { name="onlineVAR"; version="0.1-1"; sha256="01z2d91mbdjvwwiqjq1dbqp50jbc9v6d7nw4gs7d1abhsqyiqa13"; depends=[lattice]; }; @@ -13248,9 +13304,9 @@ in with self; { oompaBase = derive2 { name="oompaBase"; version="3.2.9"; sha256="1cmw2s5dznmv675484jgvkzgvi6vhg0zbxsq6zhpqsisf672pjhl"; depends=[cluster]; }; oompaData = derive2 { name="oompaData"; version="3.1.1"; sha256="0by9qfxlx6fdmp12qnphlli5hdn5balvx4ckg64fw6vwa291g7b0"; depends=[]; }; ooplah = derive2 { name="ooplah"; version="0.1.0"; sha256="0hrbpidcrnvm14qdjhcz4j4im1caydxkj4k9zmqs7dq3wv10rgr9"; depends=[R6]; }; - opGMMassessment = derive2 { name="opGMMassessment"; version="0.2.1"; sha256="0yrr2cw84gv3fj7n4l1z2p7vpcias1f33mp3ca2ha0a0ljpfa4a4"; depends=[AdaptGauss caTools cluster ClusterR DataVisualizations DistributionOptimization doParallel dplyr foreach ggplot2 mclust mixAK mixtools multimode NbClust rlang]; }; + opGMMassessment = derive2 { name="opGMMassessment"; version="0.3"; sha256="1y6g65y6r3l0p7dbw70w8lbp4c888llwd7ak9wliwin0a54y13lz"; depends=[AdaptGauss caTools cluster ClusterR DataVisualizations DistributionOptimization doParallel dplyr foreach ggplot2 mclust mixAK mixtools multimode NbClust rlang]; }; opalr = derive2 { name="opalr"; version="3.0.2"; sha256="0nwa77l4d4zz3jxmfgm8h8k823lvcvjzbk3i6ahscrhzw2ky2phc"; depends=[httr jsonlite labelled mime progress]; }; - opdisDownsampling = derive2 { name="opdisDownsampling"; version="0.7.0"; sha256="0vk99psbbks136h3md73g7w3rwlx3mgkx2lahmv536kf8v4fj2bp"; depends=[benchmarkme caTools doParallel foreach memuse pracma twosamples]; }; + opdisDownsampling = derive2 { name="opdisDownsampling"; version="0.8.0"; sha256="04qqph9flnqbqyj2kq4xjbs0rnq2flaqlxn68nmgshykbcywmc19"; depends=[benchmarkme caTools doParallel foreach memuse pracma twosamples]; }; openCR = derive2 { name="openCR"; version="2.2.1"; sha256="0v3n1w0lxbz7hf68b2dp0vsgvby9vywd35w1n7d78gwznjlisfk8"; depends=[abind BH MASS nlme plyr Rcpp RcppParallel secr stringr]; }; openEBGM = derive2 { name="openEBGM"; version="0.8.3"; sha256="120lp7fy6abj6f8g6naq4018d0dfzz6bq3dlh0xdhd4iclb7pplv"; depends=[data_table ggplot2]; }; openMSE = derive2 { name="openMSE"; version="1.0.0"; sha256="15jp9hybnkwmnkcqawhpd3y3imq6wfxxzxzh90yx4cvzky36hf89"; depends=[crayon DLMtool MSEtool SAMtool]; }; @@ -13260,7 +13316,7 @@ in with self; { openSkies = derive2 { name="openSkies"; version="1.1.5"; sha256="00lnd3xwryh8z2r4hl0xlr6mi57vnggrz3yqldvi9v7br8i54kjm"; depends=[cluster dbscan ggmap ggplot2 httr magick R6 ssh xml2]; }; openVA = derive2 { name="openVA"; version="1.0.13"; sha256="1hps67qlimhrjk3ymmr0jgqac8z6vilqgrchqp6z7vydqirfyp5l"; depends=[cli crayon ggplot2 InSilicoVA InterVA4 InterVA5 Tariff]; }; openadds = derive2 { name="openadds"; version="0.2.0"; sha256="1jb8zd3rpxfkjkg895iab6m4cfi53p5vy3nnpjkgq7ym6499qjcv"; depends=[crul dplyr jsonlite maptools rappdirs readr tibble xml2]; }; - openair = derive2 { name="openair"; version="2.8-5"; sha256="19d51pnxsy474vgzk6353ylpmdfaaw0262yp5wyad1snchbagwk9"; depends=[cluster dplyr hexbin lattice latticeExtra lubridate mapproj MASS mgcv purrr Rcpp readr rlang tidyr]; }; + openair = derive2 { name="openair"; version="2.8-6"; sha256="1h3klcg6gjr6q2pgcd317zyw9rpj4ngmkii0azcvrkpmqpbdkzrp"; depends=[cluster dplyr hexbin lattice latticeExtra lubridate mapproj MASS mgcv purrr Rcpp readr rlang tidyr]; }; openblender = derive2 { name="openblender"; version="0.5.81"; sha256="01akixxj04kgrxhv04icrivfpnipnpg9j62i3y19q3jkl9846lh1"; depends=[httr jsonlite]; }; opencage = derive2 { name="opencage"; version="0.2.2"; sha256="1sjkpp6cj6ivd68p6ql6vwgdvy0fwfkjv84wgwgb4i7f4mnxgnff"; depends=[crul dplyr jsonlite lifecycle memoise progress purrr ratelimitr rlang tibble tidyr withr]; }; opencpu = derive2 { name="opencpu"; version="2.2.5"; sha256="1qlwx8iq30qfy2sh0v31pxg955bj4zs0r7v8yklbdwb3qw7kv30g"; depends=[brew curl evaluate httpuv jsonlite knitr mime openssl protolite rappdirs remotes sys webutils zip]; }; @@ -13369,7 +13425,7 @@ in with self; { osd = derive2 { name="osd"; version="0.1"; sha256="1py9p15nrcydr8w9ilxkxabiz9zlqnls8xn9avjkxd8x6602jx6p"; depends=[JADE nnls]; }; osfr = derive2 { name="osfr"; version="0.2.8"; sha256="1yzi8k6ddr8kfgsliigbwzaiqapqa65ismbvxn30ny6raa4rf2xx"; depends=[crul fs httr jsonlite memoise purrr rlang stringi tibble]; }; oshka = derive2 { name="oshka"; version="0.1.2"; sha256="02hglpq5lknq93zbcf219lhnhppzgygkhxqixb15f89rxf9fczgs"; depends=[]; }; - oskeyring = derive2 { name="oskeyring"; version="0.1.1"; sha256="04i5nbgwwwsi0g94kyyhh29jsfn9jzjn6ihpj0ah8vj6yama152b"; depends=[]; }; + oskeyring = derive2 { name="oskeyring"; version="0.1.2"; sha256="1hwrgxsqd4s3wqvkgnga10382jva7l648jnaaff8pcb70hv4m0xg"; depends=[]; }; osmar = derive2 { name="osmar"; version="1.1-7"; sha256="0q6d8nw7d580bnx66mjc282dx45zw9srczz90b520hjcli4w3i3r"; depends=[geosphere RCurl XML]; }; osmdata = derive2 { name="osmdata"; version="0.1.8"; sha256="0cypc9ibqhg4yghyq6l9nv3j90ajy1ri7dlsc92bhpc5b7im107n"; depends=[curl httr jsonlite lubridate magrittr Rcpp rvest sp tibble xml2]; }; osmextract = derive2 { name="osmextract"; version="0.4.0"; sha256="027mwp909xa2i32ibgig6kqazwy8kqyyqyjiyaqhpajm17kfb011"; depends=[httr jsonlite sf]; }; @@ -13417,6 +13473,7 @@ in with self; { ozmaps = derive2 { name="ozmaps"; version="0.4.5"; sha256="0sqxaiw1mdcg81228g7k7r6fla6d7hfk9ax2z6pws8457xbvrzka"; depends=[oz sf tibble]; }; p2distance = derive2 { name="p2distance"; version="1.0.1"; sha256="1ims8i5z5k97kjpdysgx8g7lgvnvf7amahcrssw7bk38bvbxawni"; depends=[]; }; p3state_msm = derive2 { name="p3state.msm"; version="1.3"; sha256="0gbrka62ylxx64r3abpk60y92k2lk5smlf8na68qazph8llsl2rv"; depends=[survival]; }; + pARI = derive2 { name="pARI"; version="1.1.0"; sha256="0v96a2ppydhjsxm9msyff82g5ajqwnxby8775ra0hy6lrafhbk3h"; depends=[ARIbrain matrixStats plyr Rcpp RcppArmadillo RNifti]; }; pAnalysis = derive2 { name="pAnalysis"; version="2.0"; sha256="0pykdlbynzgcbnjs8xs8frgncf53l8qgf6na34adq7da76n570hi"; depends=[coin ggplot2]; }; pBrackets = derive2 { name="pBrackets"; version="1.0.1"; sha256="1rhsl59wqplpx4iavhm133fywkjdsbxw1x60fz22hby0cc9ckg6i"; depends=[]; }; pCODE = derive2 { name="pCODE"; version="0.9.3"; sha256="067hhlj75l04b404fidvb2rkj6bb3zxrjy37p5vzvc5a1p1pcnf5"; depends=[deSolve fda MASS pracma]; }; @@ -13428,6 +13485,7 @@ in with self; { pROC = derive2 { name="pROC"; version="1.18.0"; sha256="1abvbzdss12n64pp9vlgnn0q3abh0nj4n0a8cinwwvhphjrm9vym"; depends=[plyr Rcpp]; }; pRSR = derive2 { name="pRSR"; version="3.1.1"; sha256="1irx95b7cwvx3gpn9brjjn4k947m8frz542r18nilc9f1159mb3s"; depends=[]; }; pRecipe = derive2 { name="pRecipe"; version="0.1.1"; sha256="05lhviyzsrfh1f7jfp77i9xk5nnj4k3kgynw8brxmkyjnr68rayf"; depends=[curl data_table dplyr gdalUtils getPass ggplot2 hdf5r lubridate maps ncdf4 R_utils raster rgdal sp stringr viridis zoo]; }; + pTITAN2 = derive2 { name="pTITAN2"; version="1.0.0"; sha256="1pv7v8dl3hnb1zyx2msar8cvhx2a8y6218kf9yxz21389ig5zvq1"; depends=[data_table]; }; pa = derive2 { name="pa"; version="1.2-1"; sha256="1pfgzxirkb0p8f6smjlrbp1qpsh0vsvqf306cvldaj9zx8cw0q9f"; depends=[ggplot2]; }; pacbpred = derive2 { name="pacbpred"; version="0.92.2"; sha256="13p405vh9rf1r5idxl5payc85vwlzcd87wm15163vc9gmil1ncsf"; depends=[]; }; pack = derive2 { name="pack"; version="0.1-1"; sha256="0x4p8clwp49s2y67y7in530xwhjngnqwagf9xnyb1jp0z3myd3r7"; depends=[]; }; @@ -13457,7 +13515,7 @@ in with self; { pagemap = derive2 { name="pagemap"; version="0.1.3"; sha256="1rwspbk7xmp27iadrd1471a7z71qyzlb0vnkw4ssjk7wi8q48fnj"; depends=[htmlwidgets]; }; pagenum = derive2 { name="pagenum"; version="1.2"; sha256="0nid26wmrm76ifxqpqqry232q4alf80i7df1rg237qil8asx06k1"; depends=[]; }; pageviews = derive2 { name="pageviews"; version="0.5.0"; sha256="1fhlm2y288wx625y0glxybjb0xv9sqvvln35jqlwqq38h3grcpqd"; depends=[curl httr jsonlite]; }; - pagoda2 = derive2 { name="pagoda2"; version="1.0.6"; sha256="13dknc7qc1wfs6pjiq4kdwx1gxqx9ana3zm62j614kdd5sq8syzw"; depends=[dendsort drat fastcluster igraph irlba magrittr MASS Matrix mgcv N2R plyr R_utils R6 Rcpp RcppArmadillo RcppEigen RcppProgress rjson rlang RMTstat Rook Rtsne sccore urltools]; }; + pagoda2 = derive2 { name="pagoda2"; version="1.0.7"; sha256="0xhbrpw3865arnqigazwlzi0iihxgzdgxdclyc4ypf2abd4fgzdc"; depends=[dendsort drat fastcluster igraph irlba magrittr MASS Matrix mgcv N2R plyr R_utils R6 Rcpp RcppArmadillo RcppEigen RcppProgress rjson rlang RMTstat Rook Rtsne sccore urltools]; }; pagoo = derive2 { name="pagoo"; version="0.3.9"; sha256="0z8k7hcnc4galr1afwk7zjdjbn298jgzawc09afq6pnhl5mjiya0"; depends=[BiocGenerics Biostrings dendextend DT GenomicRanges ggfortify ggplot2 heatmaply magrittr plotly R6 reshape2 S4Vectors shiny shinydashboard shinyWidgets vegan]; }; painbow = derive2 { name="painbow"; version="1.0.1"; sha256="10c8spknh7sqa4vl0q4bjdwd03nl4qk28hj2qa9sbyb1ryc7p4j9"; depends=[ggplot2]; }; painter = derive2 { name="painter"; version="0.1.0"; sha256="0qr6p13h50rlavcsamxmijfr4dfrbv1k088m28qf8a4gam3ap85b"; depends=[]; }; @@ -13514,7 +13572,7 @@ in with self; { parallelML = derive2 { name="parallelML"; version="1.2"; sha256="05j0rb81i8342m8drwgmgi1w30q96yf501d83cdq4zhjbchphbl1"; depends=[doParallel foreach]; }; parallelMap = derive2 { name="parallelMap"; version="1.5.1"; sha256="1qg7zpz5sd9jp8wzjqahkhipwj1jn192llwg06q4gv9mlcsac261"; depends=[BBmisc checkmate]; }; parallelPlot = derive2 { name="parallelPlot"; version="0.1.0"; sha256="1zppgd0dwxfryv6wfl6k7jrny1yqb5q4f8phnnmzz9ydlv7xyv32"; depends=[htmlwidgets]; }; - parallelly = derive2 { name="parallelly"; version="1.28.1"; sha256="0qy6gj1xybiziks5gvw5px81n3klgr16kvb1qn1xp6j030xqibpl"; depends=[]; }; + parallelly = derive2 { name="parallelly"; version="1.29.0"; sha256="0a84lr2jqqnvmdayb9v9kv7m8rffp65s4s1wcalr96sl3cxypyc7"; depends=[]; }; param6 = derive2 { name="param6"; version="0.2.3"; sha256="1d4fhs82qpb18480wg6i1q59kw65hqvafv5nb7p7jqys16mmsj3i"; depends=[checkmate data_table dictionar6 R6 set6]; }; paramGUI = derive2 { name="paramGUI"; version="2.1.4"; sha256="0k2wkl99ji3w7xmd9k7zzvrr3dbf3237q7lxm527dnrq331pmxmi"; depends=[colorspace fields shiny shinydashboard TIMP]; }; parameters = derive2 { name="parameters"; version="0.15.0"; sha256="0f06bwlc1g0xdyhdqzx8plfx1jwk8a9j4lcbl91wjsil8wja0bkl"; depends=[bayestestR datawizard insight]; }; @@ -13574,7 +13632,7 @@ in with self; { patentsview = derive2 { name="patentsview"; version="0.3.0"; sha256="1ysqarmqqbw7zy1c3nfa08i6byima31pmcvv60qz9qjpyd2np0fn"; depends=[httr jsonlite]; }; path_chain = derive2 { name="path.chain"; version="0.2.0"; sha256="1p28mcar4krgvkgn02xrlwcpzchnppn2l2k2iwh511c3qrfpy653"; depends=[logger rlang stringi]; }; pathdiagram = derive2 { name="pathdiagram"; version="0.1.9.1"; sha256="018frv1n3x0bf1682jibnm5k2dlkg85xa9mps28l22a0z8bplbv5"; depends=[shape]; }; - pathfindR = derive2 { name="pathfindR"; version="1.6.2"; sha256="10fvcpikp8drmj877jn5c4216fmkr6w1xzqs5rk4qaq4w68j469h"; depends=[AnnotationDbi DBI doParallel foreach fpc ggplot2 ggraph ggupset igraph KEGGgraph KEGGREST knitr magick msigdbr org_Hs_eg_db pathfindR_data R_utils rmarkdown]; }; + pathfindR = derive2 { name="pathfindR"; version="1.6.3"; sha256="104qr67xnrqnm112xyjsakgy01xkxjxhq89vqw5ic9v3ljyn0vvr"; depends=[AnnotationDbi DBI doParallel foreach fpc ggplot2 ggraph ggupset igraph KEGGgraph KEGGREST knitr magick msigdbr org_Hs_eg_db pathfindR_data R_utils rmarkdown]; }; pathfindR_data = derive2 { name="pathfindR.data"; version="1.1.2"; sha256="0p0infg5hxw40bacgni5w1a8xb29wc0xrd8mjsnlfarr8wygd9fl"; depends=[]; }; pathlibr = derive2 { name="pathlibr"; version="0.1.0"; sha256="0z8iz765fi1s2770p7dwwv2anihfw86kb5dwg081wb6474wiq6v8"; depends=[glue logging magrittr purrr R6 rlang]; }; pathlit = derive2 { name="pathlit"; version="0.1.0"; sha256="0harvldkhq2c1wb9i4n72w1s3frhjzyn4cjpwk1n350zg12kh9gz"; depends=[httr jsonlite testthat timeSeries usethis]; }; @@ -13629,7 +13687,7 @@ in with self; { pcaPP = derive2 { name="pcaPP"; version="1.9-74"; sha256="1dlrz5plb8b89vr3j6sn9jwryyhcwflqkiilxkybbr379m1pp0sh"; depends=[mvtnorm]; }; pcadapt = derive2 { name="pcadapt"; version="4.3.3"; sha256="01wvcflfsnlsq23vq03n870fxsab3ab29k26nqlqxw82lbvx99s3"; depends=[bigutilsr data_table ggplot2 magrittr mmapcharr Rcpp rmio RSpectra]; }; pcal = derive2 { name="pcal"; version="1.0.0"; sha256="07119k5f4h9jc48bicl4q5i7bdrkha3rz22r6g44c8ilnkvjhw6j"; depends=[Rdpack]; }; - pcalg = derive2 { name="pcalg"; version="2.7-3"; sha256="0va8cx2g8dhf65sz1gzasvnnbzjrnccb5bhixj448bcnxq3mw8ql"; depends=[abind bdsmatrix BH clue corpcor fastICA ggm graph igraph RBGL Rcpp RcppArmadillo robustbase sfsmisc vcd]; }; + pcalg = derive2 { name="pcalg"; version="2.7-4"; sha256="0yph4w5hvw8ss8w6wkpka4crk9nwmm6d091gz3pr1vv2qifx98ii"; depends=[abind bdsmatrix BH clue corpcor fastICA ggm graph igraph RBGL Rcpp RcppArmadillo robustbase sfsmisc vcd]; }; pcalls = derive2 { name="pcalls"; version="1.0"; sha256="1vdgvrzfv69p3p5zc9i6gxq53f36s0mia4idzrbsda661f1bhmxk"; depends=[]; }; pccc = derive2 { name="pccc"; version="1.0.5"; sha256="0jh8yadks76ip9jmgvld9nycdm74f5gllkyhfmnrir8vi6xwvbad"; depends=[dplyr Rcpp]; }; pcdpca = derive2 { name="pcdpca"; version="0.4"; sha256="0ys4hrin0w3f87d1d986wvrfkfwapzj9hz7d7v92r60ns74g7r5m"; depends=[fda freqdom]; }; @@ -13747,7 +13805,7 @@ in with self; { petitr = derive2 { name="petitr"; version="1.0"; sha256="0i13zhdrdka0ij0khdzj6ylvvcn4wxvplb8a368i1s64cpgak30c"; depends=[]; }; petrinetR = derive2 { name="petrinetR"; version="0.2.1"; sha256="0h9nsjsj87b6qvvkg81kn0j2c4xkzq89sddp9l6pjh636bdqwf8i"; depends=[DiagrammeR dplyr purrr visNetwork xml2]; }; pewdata = derive2 { name="pewdata"; version="0.3.2"; sha256="1a4ci8hzpmwxs48lsppswcwkxv72yn44w486m9izwvx8wr1nlh2d"; depends=[foreign magrittr purrr rio RSelenium stringr]; }; - pexm = derive2 { name="pexm"; version="1.0.1"; sha256="0347k4vk5aa8myvyija4h1rpdjhxqcd39a35hfdgyzm1b57qbzkm"; depends=[coda msm rjags]; }; + pexm = derive2 { name="pexm"; version="1.1.1"; sha256="0qk634rlshd04vzb0jfnxf8xim74zkmdd6b7acg55kxx0n7kmd1i"; depends=[coda msm rjags]; }; pez = derive2 { name="pez"; version="1.2-3"; sha256="07d4p2nz19ncd7bbf5facfym5h6rriayrcflx5sjb1f8ni63f98j"; depends=[ade4 animation ape caper FD Matrix mvtnorm phytools picante quantreg vegan]; }; pfa = derive2 { name="pfa"; version="1.1"; sha256="0ikdd7ps8wnjp9nm66w447m06hqxnnk553jglxikl2w5d9vk6b31"; depends=[lars POET quantreg]; }; pfica = derive2 { name="pfica"; version="0.1.2"; sha256="0v6wz2ig88z4pvwkmsxniy7cl2415091r6kn17dbgaw2qwqxgbxn"; depends=[corpcor expm fda moments]; }; @@ -13823,6 +13881,7 @@ in with self; { phylometrics = derive2 { name="phylometrics"; version="0.0.1"; sha256="1pmr6l3wmaf91wdlsc5m63l07fibngnly2qzkma0rdi463ii03il"; depends=[mvtnorm]; }; phylopath = derive2 { name="phylopath"; version="1.1.3"; sha256="1j0gqd5027zd7xw6c8gkdqxwzqf0gw73m709gxqzk91xscnshg6q"; depends=[ape ggm ggplot2 ggraph igraph MuMIn pbapply phylolm purrr tibble]; }; phyloregion = derive2 { name="phyloregion"; version="1.0.6"; sha256="161pjy66vhpjwc4h9q4jiqpyzn0v4nawx8ahspjpc7a376rk5552"; depends=[ape betapart clustMixType colorspace dismo igraph Matrix phangorn randomForest raster rgdal rgeos sp vegan]; }; + phylosamp = derive2 { name="phylosamp"; version="0.1.6"; sha256="0bnj75hm6dlfx4milyl3idpaz0bxilmgwmcbai23gh5rgn2mpmcx"; depends=[cowplot ggplot2 RColorBrewer reshape2]; }; phyloseqGraphTest = derive2 { name="phyloseqGraphTest"; version="0.1.0"; sha256="0y1hxj68dcic4i7ihnw9hgf28qp6s6kpq4c08dy7gv19gq7sllgd"; depends=[ggnetwork ggplot2 igraph intergraph phyloseq]; }; phylosignal = derive2 { name="phylosignal"; version="1.3"; sha256="1h73wwczwak5v89mybq16lmmfr0fxfv5mx347ffipy6q9vgvwqx5"; depends=[adephylo ape boot DBI igraph phylobase Rcpp RcppArmadillo]; }; phylotate = derive2 { name="phylotate"; version="1.3"; sha256="092kvn32j06vm8ilwjkgidcz11r3qhsmi0cb0g0nnykw0a0vii4p"; depends=[]; }; @@ -13837,7 +13896,7 @@ in with self; { picasso = derive2 { name="picasso"; version="1.3.1"; sha256="1z7zm88wjp7fia7054l7i55f152iddrjj9wbcpcskhc8s6kfg53c"; depends=[MASS Matrix]; }; pid = derive2 { name="pid"; version="0.50"; sha256="05s3xqf95d4avh7gkr49jsm8jzacbv694c3wgppkkc40zip6vkc7"; depends=[DoE_base FrF2 FrF2_catlg128 ggplot2 png]; }; piecemaker = derive2 { name="piecemaker"; version="1.0.0"; sha256="0qm9bbsxfmiycbhappzpm98arlwnbck29c75xjyg03m1dbfykvnk"; depends=[purrr rlang stringi stringr]; }; - piecepackr = derive2 { name="piecepackr"; version="1.9.1"; sha256="1bz2jb45s3baljwdljkqxlcgb3jd6n858sakxzcmdpad89n6d1sn"; depends=[backports gridGeometry grImport2 jpeg png purrr R6 stringr tibble]; }; + piecepackr = derive2 { name="piecepackr"; version="1.9.2"; sha256="01vwp0h4955g9vbblsiq1m4mgc6ilx6iryfv07n81yd6b6s0690d"; depends=[backports gridGeometry grImport2 jpeg png purrr R6 stringr tibble]; }; piecewiseSEM = derive2 { name="piecewiseSEM"; version="2.1.2"; sha256="1qxwc1drx26p4cgymrfjmg5i7ypl7gddv40virkpmc0qaag9pq36"; depends=[car DiagrammeR emmeans igraph lme4 MASS multcomp nlme]; }; piggyback = derive2 { name="piggyback"; version="0.1.1"; sha256="1d448hkk772d21ix1l1cgq2a0spyjnppyrn1myjcv3dcrfxndn83"; depends=[clisymbols crayon fs gh httr jsonlite lubridate memoise]; }; pillar = derive2 { name="pillar"; version="1.6.4"; sha256="17m13rzgwdddwa0n3gpmax6wmfaphbg71l13ffhw5vnxf6i94fh3"; depends=[cli crayon ellipsis fansi lifecycle rlang utf8 vctrs]; }; @@ -13877,10 +13936,10 @@ in with self; { pkdata = derive2 { name="pkdata"; version="0.1.0"; sha256="1kmcalidw2zidd6i8ds0k057b3187by2k8z6764va43d5garbbcv"; depends=[lubridate]; }; pkgKitten = derive2 { name="pkgKitten"; version="0.2.2"; sha256="0rappcycpkdfdivzl6nn3jq1f42r9jqqmkb33asvhmpjs35fyc3s"; depends=[]; }; pkgbuild = derive2 { name="pkgbuild"; version="1.2.0"; sha256="0qx920h2viwjg10va81nj0xja495d8ni6vcc25ggvzki6a6k069f"; depends=[callr cli crayon desc prettyunits R6 rprojroot withr]; }; - pkgcache = derive2 { name="pkgcache"; version="1.2.2"; sha256="0jz3z1sxqksncisnvlnmq7ygmabh4sppjanhgk2gsqglq2zpyw4x"; depends=[assertthat callr cli curl digest filelock glue jsonlite prettyunits processx R6 rappdirs rlang tibble uuid]; }; + pkgcache = derive2 { name="pkgcache"; version="1.3.0"; sha256="0wclbg0q5gx6dsy58979j3nzpfd6b6y4gxzrihlw37zf7c54cpxx"; depends=[assertthat callr cli curl digest filelock glue jsonlite prettyunits processx R6 rappdirs rlang tibble uuid]; }; pkgcond = derive2 { name="pkgcond"; version="0.1.1"; sha256="03a4blq3niw1mljzylamvmr3l43czqlww4i6n7zb0dlym9x8gs1w"; depends=[assertthat]; }; pkgconfig = derive2 { name="pkgconfig"; version="2.0.3"; sha256="0l1qph8zyi2sic3k2qcd7vlfl7rzfh1q7z7zvjkl5f7y1x2fy3rk"; depends=[]; }; - pkgdepends = derive2 { name="pkgdepends"; version="0.1.2"; sha256="0yj0h5brkl333rs0cz1cfnn5b6ahz4130ijzz15jwxlb37yq3xy4"; depends=[callr cli crayon curl desc filelock glue jsonlite lpSolve pkgbuild pkgcache prettyunits processx ps R6 rematch2 rprojroot tibble withr zip]; }; + pkgdepends = derive2 { name="pkgdepends"; version="0.2.0"; sha256="152dpxrsdw5rp0zi0h65p6q0a2hs076wbjpslj5hhqwnwphdpbsr"; depends=[callr cli crayon curl desc filelock glue jsonlite lpSolve pkgbuild pkgcache prettyunits processx ps R6 rematch2 rprojroot tibble withr zip]; }; pkgdown = derive2 { name="pkgdown"; version="1.6.1"; sha256="1k31biyvxkv3xjc1yy3nzb9wfza3vbx97fv17nly5a6vlv7zqbs4"; depends=[callr crayon desc digest downlit fs httr magrittr memoise openssl purrr ragg rematch2 rlang rmarkdown tibble whisker withr xml2 yaml]; }; pkgfilecache = derive2 { name="pkgfilecache"; version="0.1.4"; sha256="1fr650yb4wjz6flq4f8p2p5bck5q4kkrhlhlwjn832payq9p4zsp"; depends=[downloader rappdirs]; }; pkggraph = derive2 { name="pkggraph"; version="0.2.3"; sha256="1isiywgm20rypc5qr03p0k7lis76zzd96x5ncbvia644d2n13brm"; depends=[curl data_table dplyr ggnetwork ggplot2 htmltools igraph intergraph Matrix network networkD3 plyr RColorBrewer tibble]; }; @@ -13986,7 +14045,7 @@ in with self; { pmmlTransformations = derive2 { name="pmmlTransformations"; version="1.3.3"; sha256="0315kb5x04pidpzr04yaxyynp0mz4ilzp7vkspq4agjkds5hyc88"; depends=[]; }; pmpp = derive2 { name="pmpp"; version="0.1.1"; sha256="1srmkih6zsyf8yf1f045xy1afcz0if6nf1ncslgrq6rgm7330lkw"; depends=[data_table dplyr ggplot2 magrittr MASS Matrix minqa moments plm pracma]; }; pmr = derive2 { name="pmr"; version="1.2.5"; sha256="0dq97dfjmgxlhr3a2n20vyyzfmamcicw878hdxpw31lw02xs6yls"; depends=[]; }; - pmsampsize = derive2 { name="pmsampsize"; version="1.1.0"; sha256="1hqc4xnmlflz3rwsm9yl9ya8i02f8mbqgk8yy2fjxd3y2h7qigfc"; depends=[]; }; + pmsampsize = derive2 { name="pmsampsize"; version="1.1.1"; sha256="09z1bhqk451jw5knl58mr3hs1il66hq40g2a9960gz55a8jj6fva"; depends=[]; }; pmultinom = derive2 { name="pmultinom"; version="1.0.0"; sha256="0p2amb3y4jl24r21fii1qpmdbn5pfgywrx8k7x1jxpg49rk7k0rp"; depends=[fftw]; }; pmwg = derive2 { name="pmwg"; version="0.2.0"; sha256="1f1r66ml24ys7nx5558c189a4gcaqkr16y87dmi4ravick9l5yfi"; depends=[checkmate coda condMVNorm MASS MCMCpack mvtnorm]; }; pmxTools = derive2 { name="pmxTools"; version="1.2.1"; sha256="0r5y09ab6k31d7fbd5pn8lzaafq1ix2lrjci1bsvg0wwcxmdipw6"; depends=[chron data_tree DiagrammeR dplyr ggplot2 ggrepel gridExtra magrittr MASS stringr xml2]; }; @@ -13996,7 +14055,6 @@ in with self; { poLCA = derive2 { name="poLCA"; version="1.4.1"; sha256="0bknnndcxsnlq6z9k1vbhqiib1mlzlx4badz85kc7a3xbrdrfs9f"; depends=[MASS scatterplot3d]; }; pocketapi = derive2 { name="pocketapi"; version="0.1"; sha256="0n4fyx4ldm14zy3pz7gygwhahi3p25misvxlmy8l9kqqr51fg26a"; depends=[dplyr glue httr jsonlite magrittr purrr tibble usethis]; }; pocrm = derive2 { name="pocrm"; version="0.13"; sha256="0d4iggxjbl95fz872q9v1wr30nga39sdd5dvwa2zrrm73ak81cz3"; depends=[dfcrm nnet]; }; - podcleaner = derive2 { name="podcleaner"; version="0.1.1"; sha256="1mgkcmayysm2amz2a94mzsyxa0kgqk4y43qsy4hp81j31ij8chkv"; depends=[dplyr fuzzyjoin magrittr progress purrr readr rlang stringi stringr tibble tidyr]; }; poems = derive2 { name="poems"; version="1.0.1"; sha256="15987nz7gx94lrkyizg0jdzkjnib5hykla7xrkg5fi0i6cch40bl"; depends=[abc doParallel foreach gdistance geosphere lhs metRology R6 raster trend]; }; pogit = derive2 { name="pogit"; version="1.2.0"; sha256="1kap1cpfp0k2vm7w4kjfja37n9z3j7ppiwvsdxl6bgpkf7kcnkp2"; depends=[ggplot2 logistf plyr]; }; poibin = derive2 { name="poibin"; version="1.5"; sha256="1sxryvwwz6ldsnkzdy56p8c895s5yvpcai9ndyjv1x5q3l05wf9v"; depends=[]; }; @@ -14044,7 +14102,7 @@ in with self; { polypharmacy = derive2 { name="polypharmacy"; version="1.0.0"; sha256="1rimhy7z5xglkxfp3yh4vqm5g075n8g09nl4a8nxxf6cyl504gcv"; depends=[data_table doParallel foreach itertools lubridate stringr]; }; polypoly = derive2 { name="polypoly"; version="0.0.2"; sha256="00c1hrnf575awvh0rlsnf6nkgi9p3fnqhd1knamkgb4icwi5s46d"; depends=[ggplot2 reshape2 rlang tibble]; }; polyqtlR = derive2 { name="polyqtlR"; version="0.0.6"; sha256="0kdrq2j9lzcns29a27na3f1xga9sfa5bagf7ffkbvwxndy0xv1fi"; depends=[abind doParallel foreach Hmisc knitr nlme RColorBrewer Rcpp RcppArmadillo reshape2]; }; - polyreg = derive2 { name="polyreg"; version="0.6.9"; sha256="04dw410h29r6ji38nrlnkhb5hpmify68drnl3vmzx33xx6avd15x"; depends=[dummies nnet partools RSpectra]; }; + polyreg = derive2 { name="polyreg"; version="0.7.0"; sha256="1vsg1ldhvdq8pmw16qiv62c5l52mh6ccjcz3i3v06150ma953gcn"; depends=[dummies nnet]; }; polysat = derive2 { name="polysat"; version="1.7-5"; sha256="1wc5q7hnhsshj8j83q85xzy84cjxmy6k2w6w0p0id05wp4j9vm94"; depends=[Rcpp]; }; polywog = derive2 { name="polywog"; version="0.4-1"; sha256="02qk1cyvkd77mwlvhj1zzzi0bmy7qxz29j2v730wp7rz4w7h5x5n"; depends=[foreach Formula glmnet iterators Matrix miscTools ncvreg Rcpp stringr]; }; pom = derive2 { name="pom"; version="1.1"; sha256="02jv19apn0kmp1ric2cxajlaad2fmsz4nm4izd2c3691vzas7l83"; depends=[matrixcalc]; }; @@ -14067,7 +14125,7 @@ in with self; { popReconstruct = derive2 { name="popReconstruct"; version="1.0-6"; sha256="0nmf93dy2qf7z9mafpy99ry53aapbxlismn7drn732r8gvravapx"; depends=[coda]; }; popbayes = derive2 { name="popbayes"; version="1.0"; sha256="01p0highanjqdslbavykx67ss7w7f5xwczqx1l5pw4gkrvngm992"; depends=[R2jags usethis]; }; popbio = derive2 { name="popbio"; version="2.7"; sha256="02dbb2sinn1n8a9dg8lvf35sc8hb14c90mjymz2gk64xdysf0m2j"; depends=[]; }; - popdemo = derive2 { name="popdemo"; version="1.3-0"; sha256="0760ajqaq822m0j092gdqzhgw1mk413k09mmmwyzb0jzj6bd15q3"; depends=[expm MCMCpack]; }; + popdemo = derive2 { name="popdemo"; version="1.3-1"; sha256="0xvqp71spqh5khi2gdzxmj8pp71i6l2qpcgcw8s9xbqwx9w905mq"; depends=[expm MCMCpack]; }; popgenr = derive2 { name="popgenr"; version="0.2"; sha256="164dhizka0yadzihbjqkfs5p0hknw966mq0grigs7r9ppbq9kajh"; depends=[]; }; popkin = derive2 { name="popkin"; version="1.3.13"; sha256="0b00rs89jrz28p4gj35lngvaq3jynmw1gqvz4pdbsnpan6xr63v1"; depends=[ape RColorBrewer Rcpp RcppEigen]; }; poppr = derive2 { name="poppr"; version="2.9.3"; sha256="0f8gw14vz4p6jvxa8w3fp84pm1k980mk5sfbj82qmmj236rfvyx9"; depends=[ade4 adegenet ape boot dplyr ggplot2 igraph magrittr pegas polysat progressr rlang shiny vegan]; }; @@ -14108,7 +14166,7 @@ in with self; { powerMediation = derive2 { name="powerMediation"; version="0.3.4"; sha256="08zszskhd21pbjamch5q7v7vx2p78c1d53zrp31hmpxk1ymx2xf3"; depends=[]; }; powerSurvEpi = derive2 { name="powerSurvEpi"; version="0.1.3"; sha256="1p1fw4jq4rxc273hmycxf4bkqm6zmfw0jdy2s65jy10q37r53ial"; depends=[pracma survival]; }; powerbydesign = derive2 { name="powerbydesign"; version="1.0.5"; sha256="006m127rc49bshgljd5d3ii6sfx24ndn2690ixj0vnqm2dp3zjnw"; depends=[gdata ggplot2 lme4 MASS plyr reshape2 stringr]; }; - powerly = derive2 { name="powerly"; version="1.7.1"; sha256="0bfnsj0620y2snm7z18z3ssiflnmzy3gdfni1hzvqqsfdjhhygir"; depends=[bootnet ggplot2 osqp patchwork progress qgraph quadprog R6 rlang splines2]; }; + powerly = derive2 { name="powerly"; version="1.7.2"; sha256="104wp8cbwzlb6il614aacq608rir3yv18rwjqxljxi597nyy004v"; depends=[bootnet ggplot2 osqp patchwork progress qgraph quadprog R6 rlang splines2]; }; powerpkg = derive2 { name="powerpkg"; version="1.5"; sha256="0mbk2fda2fvyp1h5lk5b1fg398xybbjv0z6kdx7w7xj345misf7l"; depends=[]; }; powerplus = derive2 { name="powerplus"; version="3.1"; sha256="0ayp6x34hkzgris4j3zbbs0r23n81bhww3wgfyy630ri4sk6brrn"; depends=[complexplus expm MASS Matrix phonTools]; }; ppcSpatial = derive2 { name="ppcSpatial"; version="0.2.0"; sha256="1gi57zngc42wcrihg29nn7qa3gaq105ckp76qmczkldshlpd7x4r"; depends=[dplyr ggplot2 htmltools htmlwidgets leaflet magrittr PakPC2017 rgdal scales shiny tidyr tmap]; }; @@ -14170,13 +14228,13 @@ in with self; { prereg = derive2 { name="prereg"; version="0.5.0"; sha256="0bck13iiaxwpqh0rd45mp1s5d8z62ggg0wa7rmyi8a65aywiypsi"; depends=[rmarkdown]; }; preregr = derive2 { name="preregr"; version="0.1.9"; sha256="04fq2rxqfrpfxpv25biv2rxg0n4zdyyxylcl148x3cwxsc88rad1"; depends=[cli jsonlite rmdpartials yaml]; }; presens = derive2 { name="presens"; version="2.1.0"; sha256="175nr9pqn3m6kh9bcc1gxqmqv05xdsqdw9lx385lmm1g947d2159"; depends=[marelac measurements]; }; - presenter = derive2 { name="presenter"; version="0.1.0"; sha256="1sfn3pia1wvljgbkiya338d90xm404kp3qdq6sf0zacskwfaagjv"; depends=[badger berryFunctions dplyr flextable formattable framecleaner janitor lubridate magrittr officer openxlsx purrr randomcoloR rlang rvg stringi stringr tibble tidyr tidyselect]; }; + presenter = derive2 { name="presenter"; version="0.1.1"; sha256="13q9cn2kglrr37cng9rz3bpl2ipmbiaaf233bn1bw83c6fisrq6m"; depends=[badger berryFunctions dplyr flextable formattable framecleaner janitor lubridate magrittr officer openxlsx purrr randomcoloR rlang rvg stringi stringr tibble tidyr tidyselect]; }; presentes = derive2 { name="presentes"; version="0.1.0"; sha256="0d6zhishc7wxcvvglgw44pc6c172qpxb8i4iw3lqbmji7ash5zpx"; depends=[]; }; preseqR = derive2 { name="preseqR"; version="4.0.0"; sha256="1g2rnnmi45649vpy6z45v5i3wxm54s138ajqrzwi3a5r7x3xnhq1"; depends=[polynom]; }; presize = derive2 { name="presize"; version="0.2.3"; sha256="0gwavbi9fbwh454n5yg0rwqy13a8zjhs2yj7jhlmjn1bjjmxp8j4"; depends=[kappaSize shiny]; }; presmTP = derive2 { name="presmTP"; version="1.1.0"; sha256="134p58zzk8i0whscvl5qdfn4niksypyxavq1m15cvw4zzk4dk6fw"; depends=[mgcv survPresmooth]; }; presser = derive2 { name="presser"; version="1.1.0"; sha256="1slkdfh0wq242adp6a60612sjz117bii3pbahn00bfmnpa9g1wya"; depends=[]; }; - prettifyAddins = derive2 { name="prettifyAddins"; version="2.2.0"; sha256="1hwcvfzknr6fnqbgbp5mq8g3cayrl4df8ncg0rvshaxkvmapcm88"; depends=[httr rstudioapi shiny webdriver xml2 XRJulia]; }; + prettifyAddins = derive2 { name="prettifyAddins"; version="2.3.0"; sha256="14all19l4q9n2wjc4y1sv8zncy21aar29al1fnwqkvbp8ghjkx5m"; depends=[httr rstudioapi shiny webdriver xml2 XRJulia]; }; prettyB = derive2 { name="prettyB"; version="0.2.2"; sha256="1wszcmn5jnk02iyvjld42291m1irfp9m0b3lcdyyp41iq3icm67g"; depends=[]; }; prettyGraphs = derive2 { name="prettyGraphs"; version="2.1.6"; sha256="0yjpwxdy9mkj2k33zvd5klyv4ava46i19yls87n0bvf79y90ikpy"; depends=[]; }; prettyR = derive2 { name="prettyR"; version="2.2-3"; sha256="1rs90cmr5dyry724php90mp41qwzzk1z3gxfwcj1k157qawacyhr"; depends=[]; }; @@ -14188,7 +14246,7 @@ in with self; { prevR = derive2 { name="prevR"; version="3.4.1"; sha256="02qfyc5j7rgvwl7a5pr1l41jmgjxxsrc674xfm08hcydwda5clq1"; depends=[directlabels fields foreign GenKern ggplot2 gstat maptools rgdal sp]; }; prevalence = derive2 { name="prevalence"; version="0.4.0"; sha256="0vnmglxj1p66sgkw4ffc4wgn0w4s281fk2yifx5cn4svwijv30q0"; depends=[coda rjags]; }; prevederer = derive2 { name="prevederer"; version="0.0.1"; sha256="0vkx9nrlgp36xbl95lrb5sb5yivxlcw4yvbs8hgbm31kh0vbz32f"; depends=[httr]; }; - previsionio = derive2 { name="previsionio"; version="11.3.1"; sha256="13ypvlw2lz41v85rp7nqsv43n27far7jllf5ni4kvmpxw0xwi52c"; depends=[data_table futile_logger httr jsonlite magrittr Metrics plotly XML]; }; + previsionio = derive2 { name="previsionio"; version="11.3.3"; sha256="0mx604y4kwj7d4ssnb1i61fyh3cd6df81yhvpjpf2k4bi6ifcx2s"; depends=[data_table futile_logger httr jsonlite magrittr Metrics plotly XML]; }; prevtoinc = derive2 { name="prevtoinc"; version="0.12.0"; sha256="0ypdxcx9gh87a7ih3cw3yai47rzv41qwh4kpk6007ai8jkjv4n9w"; depends=[dplyr purrr rlang tibble]; }; prewas = derive2 { name="prewas"; version="1.1.1"; sha256="16dpwpks0sqfq7pdhbpipb8hnm2viic2dnz1g7v86ar51z8db4xk"; depends=[ape future future_apply phangorn vcfR]; }; priceR = derive2 { name="priceR"; version="0.1.6"; sha256="1c2yxjrd9v5i76hc5dn0hc6k2shy9cs32mvhr579w7n990ksjw23"; depends=[curl dplyr gsubfn jsonlite lubridate purrr stringi stringr]; }; @@ -14267,7 +14325,7 @@ in with self; { prophet = derive2 { name="prophet"; version="1.0"; sha256="06mryavky9xj54ig4scqjgpx7i56nwhs53g0zqsbs9f6qxja7gll"; depends=[BH dplyr dygraphs extraDistr ggplot2 lubridate Rcpp RcppEigen RcppParallel rlang rstan rstantools scales StanHeaders tidyr xts]; }; proportion = derive2 { name="proportion"; version="2.0.0"; sha256="0a71f6hz6blb7550m9x0di84vp51yjhnn952301rwlrh3axf6dbr"; depends=[ggplot2 TeachingDemos]; }; propr = derive2 { name="propr"; version="4.2.6"; sha256="16ghgzpwz6q9zlaa0pc8wqv0wpz81c75n7zwjyr1lv9y19qwlkfg"; depends=[fastcluster ggplot2 igraph Rcpp]; }; - prospectr = derive2 { name="prospectr"; version="0.2.1"; sha256="0yg2ip33548mily51hgpiiasp67pcc3x1ksmbaxcg1mpp48algyz"; depends=[foreach iterators lifecycle mathjaxr Rcpp RcppArmadillo]; }; + prospectr = derive2 { name="prospectr"; version="0.2.2"; sha256="1nlwwz777nlpdcnsn36j6s0gpdb7ria08x20hklmsa49q2aiqfc1"; depends=[foreach iterators lifecycle mathjaxr Rcpp RcppArmadillo]; }; protViz = derive2 { name="protViz"; version="0.7.0"; sha256="0l1pmfr9kmc90rl5s9b0141451rxrjmiiasp3lsvl2x3ps0smqaj"; depends=[Rcpp]; }; protag = derive2 { name="protag"; version="1.0.0"; sha256="1iaw2w1d7hdvlg5vplpqc49wq08dgmm0ifvp2v0ggqb8invvdnw8"; depends=[dplyr ggplot2 RColorBrewer]; }; protein8k = derive2 { name="protein8k"; version="0.0.1"; sha256="11qj4sadhcsp1kk5kjmvzj2jnd3srsm5mp0q9h9khp1ps6dk35yw"; depends=[dplyr ggplot2 gridExtra lattice magick pryr rjson rlang shiny]; }; @@ -14293,7 +14351,7 @@ in with self; { provenance = derive2 { name="provenance"; version="3.3"; sha256="0kdpv1gjvgv9nxfsarm1z042xas9d4n2smhrqccs450a2mhb5fxr"; depends=[IsoplotR MASS]; }; proxirr = derive2 { name="proxirr"; version="0.2"; sha256="0ffnzmd9zy43vzp0mc0ncjwfj5d7p2gzwk8gcwhk1f9yvgiw4wc1"; depends=[]; }; proxy = derive2 { name="proxy"; version="0.4-26"; sha256="0k8sr24mjfvxp12sf1j9228ah3ngy15nqmm0jw14x5s32f1assv7"; depends=[]; }; - proxyC = derive2 { name="proxyC"; version="0.2.2"; sha256="107z7di0xkil58pf051abp8v729rg4gk47bp9a1h5z1xwp132fnh"; depends=[Matrix Rcpp RcppArmadillo RcppParallel]; }; + proxyC = derive2 { name="proxyC"; version="0.2.3"; sha256="1g90d82rp82dkidlfykankprzpp94d7394s2b2qjlyiia3k0hlb3"; depends=[Matrix Rcpp RcppArmadillo RcppParallel]; }; prozor = derive2 { name="prozor"; version="0.2.11"; sha256="1a2k69fvgi6vxgczk81kh8r2jxc6nirc51w6ac239rqjzb1zyhjm"; depends=[AhoCorasickTrie doParallel dplyr foreach Matrix plyr readr seqinr stringr]; }; prrd = derive2 { name="prrd"; version="0.0.5"; sha256="0ig3k1l2md6hzb5asv277ylg0k9a1rkcrbs8d8h4f07pxykhmivf"; depends=[config crayon data_table DBI liteq RSQLite]; }; prt = derive2 { name="prt"; version="0.1.4"; sha256="0adbznxacdfqd9hvp5x45vckh6vxlz2fvhqdqikmfy99k9gzcd4c"; depends=[assertthat backports cli crayon data_table fansi fst pillar rlang tibble vctrs]; }; @@ -14362,7 +14420,7 @@ in with self; { pubchunks = derive2 { name="pubchunks"; version="0.3.0"; sha256="14jzl0ra0d68s246a9jhfgp1wyy9g7d0rzahvl97crkklld1crvx"; depends=[data_table rcrossref xml2]; }; pubh = derive2 { name="pubh"; version="1.2.5"; sha256="0gqiqrj1w4arwlfvwllghdq5p85yl0aqabfij54wgvgs34nfmqjb"; depends=[car dplyr emmeans Epi epiR epitools ggformula ggplot2 gtsummary Hmisc huxtable lmtest magrittr moonBook sandwich sjlabelled sjmisc sjPlot survival tibble tidyselect]; }; publipha = derive2 { name="publipha"; version="0.1.1"; sha256="0ssmkz4bbrp5yvqb2da0i6shzm59ydw2sqkmqkid039782sibjch"; depends=[BH loo Rcpp RcppEigen rstan rstantools StanHeaders truncnorm]; }; - pubmed_mineR = derive2 { name="pubmed.mineR"; version="1.0.18"; sha256="1y396jjybgawmd6nfmqz8zzgf2jk1hq4519njbi5q4wna8gg3gar"; depends=[boot R2HTML RCurl XML]; }; + pubmed_mineR = derive2 { name="pubmed.mineR"; version="1.0.19"; sha256="0yh4gjhh7nw5vh3ksay2z5pgskmasbagzbgb3bfxch9b6arv6kgc"; depends=[boot R2HTML RCurl RJSONIO XML]; }; pubmedR = derive2 { name="pubmedR"; version="0.0.3"; sha256="153br94iqayrvvgzrzx0r3ilcrmnznfdnzk8yaii01s8i1g1wxcd"; depends=[rentrez XML]; }; pubtatordb = derive2 { name="pubtatordb"; version="0.1.4"; sha256="0i5azbf75bwxxzpsr5fc2hh22pbwix00hz9dcdpn5jgp2957f7wx"; depends=[assertthat DBI dplyr R_utils readr RSQLite]; }; pullword = derive2 { name="pullword"; version="0.3"; sha256="125d091ba9h8h61y0m1bnflklmz898sp9w6ibca50vwz3d2qy5rz"; depends=[RCurl]; }; @@ -14378,8 +14436,9 @@ in with self; { purrr = derive2 { name="purrr"; version="0.3.4"; sha256="1cj091rsjdj2xz16qhynyw72gh5cyhznifcfbrbygndfr4xwksr3"; depends=[magrittr rlang]; }; purrrlyr = derive2 { name="purrrlyr"; version="0.0.7"; sha256="03472xz0q30vjg45xv24zkd9b1w8ggi33vchxrimfnppdiqi3x0m"; depends=[BH dplyr magrittr purrr Rcpp]; }; pushbar = derive2 { name="pushbar"; version="0.1.0"; sha256="1gxarv6x32y6ssrhsq3pyihzcvpnnj7bg0jf2cpcr99da78n1d9b"; depends=[jsonlite shiny]; }; - pushoverr = derive2 { name="pushoverr"; version="1.0.0"; sha256="1zazrx0szx21ymn7zlkfqkhid0ar8jblnpnf5nycj0p7dbh6d0bd"; depends=[assertthat httr]; }; + pushoverr = derive2 { name="pushoverr"; version="1.1.0"; sha256="05ma76jhk00m9872f7gb0vwmk2q3l79r1ddaf1slbhgd57l1avk2"; depends=[checkmate cli glue httr rlang]; }; puzzle = derive2 { name="puzzle"; version="0.0.1"; sha256="073n074irsvn4w1jy5xmr6l24a209kn0ypvf1d2zn3p6yd93wzss"; depends=[dplyr kableExtra lubridate plyr readr readxl reshape reshape2 sqldf tidyverse]; }; + pvLRT = derive2 { name="pvLRT"; version="0.3"; sha256="0fhnyj0ax9c4k0vah0p7dlf825abxr45bkcx5ifrgbmwdnj783gl"; depends=[bit64 data_table ggplot2 glue magrittr progress RColorBrewer]; }; pvaluefunctions = derive2 { name="pvaluefunctions"; version="1.6.1"; sha256="0p1hgrab8yallxri1z2q3cv26q6nydzykcvc6bcv9r00wjjfh966"; depends=[ggplot2 pracma scales zipfR]; }; pvar = derive2 { name="pvar"; version="2.2.5"; sha256="1a5dxhki5nd5s1d5wwnc1dkg7mdib2s8w1i0l8mdg3f1g3l00klz"; depends=[Rcpp]; }; pvclass = derive2 { name="pvclass"; version="1.4"; sha256="1g6x75qz3xybq1xnik0hzi7mcs0gzzqd3f0iwfkzi5d1zcddnw13"; depends=[Matrix]; }; @@ -14399,6 +14458,7 @@ in with self; { pwt9 = derive2 { name="pwt9"; version="9.1-0"; sha256="0m2df89lali9945avcv4gdjpxch9in7vdd042nx0q8nv0alb4ijd"; depends=[]; }; pxR = derive2 { name="pxR"; version="0.42.4"; sha256="1r0ffr5wxf67i1jh67v06vcmifw4hhhasd4aivic94bkvq4sqmn5"; depends=[plyr reshape2 RJSONIO stringr]; }; pxweb = derive2 { name="pxweb"; version="0.12.0"; sha256="0xg20yxc2fl31rqs92m4slc1b0q7vwpqnjv6hh0v4bybgw02qvr1"; depends=[checkmate httr jsonlite]; }; + pyMTurkR = derive2 { name="pyMTurkR"; version="1.1.5"; sha256="1b1cbvjbnvw2h8l3lbm0ma80zgpm212wzfhyyr6dr115k237xy89"; depends=[curl reticulate XML]; }; pycno = derive2 { name="pycno"; version="1.2"; sha256="0ha5css95xb98dq6qk98gnp1al32gy6w5fkz74255vs4hmkwfzw2"; depends=[maptools rgeos sp]; }; pyinit = derive2 { name="pyinit"; version="1.1.2"; sha256="0i5l9rm8gkkabsqxkl0gvrpsbz7im0lk0axz1c0m0lq2vlrw9jsq"; depends=[robustbase]; }; pylintR = derive2 { name="pylintR"; version="0.1.0"; sha256="00k9p3igdxhyx353gq8j9mnhrs9fh0j4q2iqa2ljfjdsdw1r2asr"; depends=[fansi htmlwidgets rstudioapi]; }; @@ -14427,7 +14487,7 @@ in with self; { qdapTools = derive2 { name="qdapTools"; version="1.3.5"; sha256="09byvv39qmdcavlykpcvk248l2f7sw0pq64ynq2xffmnga3ji24c"; depends=[chron data_table RCurl XML]; }; qdm = derive2 { name="qdm"; version="0.1-0"; sha256="0cfxyy8s5zfb7867f9xv9scq9blq2qnw68x66m7y7nqlrrff5xdr"; depends=[]; }; qfasar = derive2 { name="qfasar"; version="1.2.1"; sha256="14370bmq4qx5j02va13wz52m2lgl4vb992p9587z9v2sxl1v4jjg"; depends=[Rsolnp]; }; - qgam = derive2 { name="qgam"; version="1.3.3"; sha256="0vx2wf3rqc3j8i0870xrwxndkbgza0nnh7f0yxi8h67lfi7gws4s"; depends=[doParallel mgcv plyr shiny]; }; + qgam = derive2 { name="qgam"; version="1.3.4"; sha256="1jyamamdffaks89rspyhmg18b4iik0nb1j0vgqzvfnm890514cvn"; depends=[doParallel mgcv plyr shiny]; }; qgcomp = derive2 { name="qgcomp"; version="2.8.0"; sha256="1z9wy2nxjr6dnxphsnfbdbqgbyysbrygybbpaka4li42wkfnaz40"; depends=[arm future future_apply generics ggplot2 gridExtra pscl survival tibble]; }; qgcompint = derive2 { name="qgcompint"; version="0.6.2"; sha256="0jn39bsm75z13r5hhbhw0hs9a9yy54zn7sv9xq88hgzl4qqqnaaa"; depends=[arm future future_apply ggplot2 gridExtra qgcomp survival]; }; qgg = derive2 { name="qgg"; version="1.0.4"; sha256="1xyviy73jl76bpv5izlkgf171qrypgv2wm5mi3s06cb7md8psrkb"; depends=[data_table MASS MCMCpack statmod]; }; @@ -14458,7 +14518,7 @@ in with self; { qqtest = derive2 { name="qqtest"; version="1.2.0"; sha256="1v0qbbp2dpqflpg7yif7hipwdbz27isfyfwcia1ln7z0nnvkjm8c"; depends=[]; }; qqvases = derive2 { name="qqvases"; version="1.0.0"; sha256="1fli4v1slmnwcmzmmfw84sa4mx3xzv3im1q0plb8811sbsgmwdvl"; depends=[shiny shinythemes]; }; qrLMM = derive2 { name="qrLMM"; version="2.1"; sha256="1viyllsd08dwgd5z930ml1nrcc9saaa18i5sx0bska8b0s7qh414"; depends=[ald lqr mvtnorm psych quantreg]; }; - qrNLMM = derive2 { name="qrNLMM"; version="3.1"; sha256="15gr3wg8d4kh5fl006p4ddfsxzx7wypniwk5h2dai5c3ag7ki59c"; depends=[ald lqr mvtnorm progress psych quantreg]; }; + qrNLMM = derive2 { name="qrNLMM"; version="3.2"; sha256="0spwwzrjzz74gfl3s4dghrbvqmg8f7ic52yz3nbm85bpgjw7zqnv"; depends=[ald lqr mvtnorm progress psych quantreg]; }; qra = derive2 { name="qra"; version="0.2.7"; sha256="0wx0lz8a7qc1fdpvgyfhpbryy7wk7yi90ii2yirh57dvpyfq54m0"; depends=[ggplot2 knitr lattice latticeExtra lme4 rmarkdown]; }; qrage = derive2 { name="qrage"; version="1.0"; sha256="00j74bnkcpp0h8v44jwzj67q9aaw47ajc2fvgr6dckj9rymydinl"; depends=[htmlwidgets]; }; qrandom = derive2 { name="qrandom"; version="1.2.4"; sha256="0a75pz9bhy6bqxlz02bgkgi83hrq06p9ah7qf8n0pdc2rh3sy1cx"; depends=[curl jsonlite Rmpfr]; }; @@ -14514,7 +14574,7 @@ in with self; { quanteda = derive2 { name="quanteda"; version="3.1.0"; sha256="0gafbb73gcxx2gq9q7bg88alyhymkr471lp394m5ydij6mdm4hb9"; depends=[fastmatch magrittr Matrix Rcpp RcppArmadillo RcppParallel SnowballC stopwords stringi xml2 yaml]; }; quanteda_textmodels = derive2 { name="quanteda.textmodels"; version="0.9.4"; sha256="0r2nls93nriw97z0rmmpn2bb8c3jr571hv5slqj68p7ibr06rh1h"; depends=[glmnet LiblineaR Matrix quanteda Rcpp RcppArmadillo RcppParallel RSpectra SparseM stringi]; }; quanteda_textplots = derive2 { name="quanteda.textplots"; version="0.94"; sha256="1as7mpy3ihja5d9nw7c30w0yhaklpmn41bgw2cvpic2rbp5828fa"; depends=[extrafont ggplot2 ggrepel igraph Matrix network quanteda RColorBrewer Rcpp sna stringi]; }; - quanteda_textstats = derive2 { name="quanteda.textstats"; version="0.94.1"; sha256="1hwkkk1q6h8fdd0wdbkg657zppg2l049bcnxw4zq602wfplxra5n"; depends=[Matrix nsyllable proxyC quanteda Rcpp RcppArmadillo RcppParallel stringi]; }; + quanteda_textstats = derive2 { name="quanteda.textstats"; version="0.95"; sha256="100125n2l3mhj0clbwpy3cbb84mwf83ix2c67sy8lmmh71vxz2rk"; depends=[Matrix nsyllable proxyC quanteda Rcpp RcppArmadillo RcppParallel stringi]; }; quantification = derive2 { name="quantification"; version="0.2.0"; sha256="116cp88q9cmizxc2a8lsysa1vwyp1y86457fx5qkq5dcm4g721g8"; depends=[car]; }; quantileDA = derive2 { name="quantileDA"; version="1.1"; sha256="0jbklxsy33j7clcw97qq4ijwkrb94v2m11gjcfa38vplfxm9913q"; depends=[]; }; quantilogram = derive2 { name="quantilogram"; version="2.1.1"; sha256="07mvgbk5qhkaihk2dn5c8cfac2xd9hfglh284sg4jkrkq0cfgrl8"; depends=[np quantreg SparseM]; }; @@ -14528,7 +14588,7 @@ in with self; { quantregGrowth = derive2 { name="quantregGrowth"; version="1.4-0"; sha256="0fw8kdgnlvb9c0xnankmzlpk9qnk52rqrrby32a02mz2f93ddh7k"; depends=[quantreg]; }; quantregRanger = derive2 { name="quantregRanger"; version="1.0"; sha256="1a9q2prr790bpw6s0y5ni5ppd3vqkjr0v4nqp6ywcj5n3sk69pvx"; depends=[ranger Rcpp]; }; quantspec = derive2 { name="quantspec"; version="1.2-3"; sha256="0ifwq2jmvxhpijz9yd9hffkff6ixcliaqkp9ispp9k1b8icwi8zn"; depends=[abind quantreg Rcpp snowfall zoo]; }; - quarks = derive2 { name="quarks"; version="1.0.9"; sha256="02yjmbv0lm940g74d4q6xhmv158ghis9n9s84g09j3q8wzkgmsld"; depends=[rugarch]; }; + quarks = derive2 { name="quarks"; version="1.0.10"; sha256="13g2pyxb2a4vyyj7nzq23mzbl1j9q5kpvyj0vd1gxvjnds47r5qp"; depends=[rugarch]; }; quarrint = derive2 { name="quarrint"; version="1.0.0"; sha256="13fdmmrgn23xd9vpywmcl7pf729gmcxjfl1wxs30axsbp4h1s6rk"; depends=[neuralnet]; }; quarto = derive2 { name="quarto"; version="1.0"; sha256="1733ck30p163m6zfxwr8kbzf8ks4zi0g5fi1azwdl97np5q3aarw"; depends=[jsonlite later processx rmarkdown rstudioapi yaml]; }; queryparser = derive2 { name="queryparser"; version="0.3.1"; sha256="1pz66f3wxvvv42l5hib7hbpy14s8a13gn0n57vf6v5zdnz423kdr"; depends=[]; }; @@ -14557,6 +14617,7 @@ in with self; { qwraps2 = derive2 { name="qwraps2"; version="0.5.2"; sha256="1ars25aa50fn6m4v423pzs4rkplxhpi26qi3aq7f39bgmqpnpy83"; depends=[dplyr ggplot2 knitr Rcpp RcppArmadillo rlang xfun]; }; r_blip = derive2 { name="r.blip"; version="1.1"; sha256="1p33g6i6fq9c27d5ix9nd8prv90i4hrf91x34bldlw8041sjqxm0"; depends=[bnlearn foreign]; }; r_jive = derive2 { name="r.jive"; version="2.4"; sha256="12zjzjjy1dwhr1gxb5029p5l3wjhwaysja4zf6insdnx1fd0ybxd"; depends=[abind gplots]; }; + r_proxy = derive2 { name="r.proxy"; version="0.1.0"; sha256="0k7bcgp1d53ps6aalqz764v33mkamz5czdp72fc69zwrfb9rz63w"; depends=[curl jsonlite]; }; r02pro = derive2 { name="r02pro"; version="0.1"; sha256="1zciq86wpykvbd6zmh8b83dl4vpz53isi6hbbrz0h48sqb1g2006"; depends=[learnr]; }; r2d2 = derive2 { name="r2d2"; version="1.0-0"; sha256="1zl0b36kx49ymfks8rm33hh0z460y3cz6189zqaf0kblg3a32nsi"; depends=[KernSmooth MASS sp]; }; r2d3 = derive2 { name="r2d3"; version="0.2.5"; sha256="1wfr5qnywrvps25z9iwn04n6wwvam4340jwpszxbbawby48kjppn"; depends=[htmltools htmlwidgets jsonlite rstudioapi]; }; @@ -14573,6 +14634,7 @@ in with self; { r2r = derive2 { name="r2r"; version="0.1.1"; sha256="0vp0ak88m3ssca8b8kxf9w6qkxsdy0qs6cngrr9gqvbrnx0gh9j6"; depends=[digest rlang]; }; r2rtf = derive2 { name="r2rtf"; version="0.3.1"; sha256="0icqk7awynasvwwkxf983c6jdgabm3mbw3kw7nqddavqmzcdl4cy"; depends=[]; }; r2shortcode = derive2 { name="r2shortcode"; version="0.1"; sha256="03djy8m146k31xgvwcbrd1nzwj4wdlvvwzgviv80kskgr6ld9jrj"; depends=[magrittr stringr]; }; + r2spss = derive2 { name="r2spss"; version="0.2.0"; sha256="1l3yy4fqnmdndm4mxcn5mnzwcdrsrfgq49z9liivjp587665n8jc"; depends=[car]; }; r2sundials = derive2 { name="r2sundials"; version="5.0.0-10"; sha256="1hv5wq6lxrv57pszxky4xiwhjhjlzxa4fh0flrrmrrk89dygkx9v"; depends=[Rcpp RcppArmadillo rmumps]; }; r2symbols = derive2 { name="r2symbols"; version="0.1"; sha256="1i4sd015dgkv5i89d0cphp3jmn4jn4wqfazklfglysf85b2cm4iw"; depends=[]; }; r3PG = derive2 { name="r3PG"; version="0.1.3"; sha256="188vjzjya3qxi2xgzxxvf6ys97yxgdbjivwc54f4as37k2ad7l6p"; depends=[]; }; @@ -14605,6 +14667,7 @@ in with self; { rD3plot = derive2 { name="rD3plot"; version="1.0.25"; sha256="1ilkd3ixkqpdi7hy6sdss53s40w640n7c7v7nb8khqlpfghkrpch"; depends=[igraph]; }; rDEA = derive2 { name="rDEA"; version="1.2-6"; sha256="0045crn7azsy3ggzr28vw5jd4f5aw5nj16cjnjxy2md3skfbc3zw"; depends=[maxLik slam truncnorm truncreg]; }; rDNAse = derive2 { name="rDNAse"; version="1.1-1"; sha256="0cl51q61kwvdsm5f49cjjbzggqam1fnr6gp15cmy6m2yahyxg1lk"; depends=[]; }; + rDataPipeline = derive2 { name="rDataPipeline"; version="0.54.1"; sha256="0i0vb7gsjshh1wn0lksdma51xdyn6qw54j02cb0xmzcg896gl2p9"; depends=[assertthat cli configr dplyr git2r httr jsonlite openssl R6 rhdf5 semver usethis yaml]; }; rDecode = derive2 { name="rDecode"; version="0.1.0"; sha256="1d0rrhycw9anhvx6czz7axkzhzqprdgi9sqfglmc962zf1x3hmn2"; depends=[]; }; rDotNet = derive2 { name="rDotNet"; version="0.9.1"; sha256="18cd5373pdfi1x958llb4cgjqdi1fb7h7m5nkdwcd4xw9hxhinzd"; depends=[Rcpp testthat]; }; rDppDiversity = derive2 { name="rDppDiversity"; version="0.0.2"; sha256="0833v5wkamqipfxpsdxz040q6vlgg9qqpwiaivvh8ar5sci10v88"; depends=[Rcpp]; }; @@ -14628,7 +14691,6 @@ in with self; { rJython = derive2 { name="rJython"; version="0.0-4"; sha256="13fpcw37cca738v9idqgi3gv9avfkfwfacxj54p2c4wyg46ghnah"; depends=[rJava rjson]; }; rKIN = derive2 { name="rKIN"; version="0.1"; sha256="1j6fdi5h869q4d1hq6ha6qyhisa0zk2qmhjrc4ahl9991d680dyn"; depends=[ggplot2 maptools MASS rgeos sp]; }; rKOMICS = derive2 { name="rKOMICS"; version="1.1"; sha256="0zs7a75hgrj4ajbbxn0kmc2871rakyizhwdn7ryha8bgig4ld3cs"; depends=[ape circlize ComplexHeatmap dplyr factoextra FactoMineR ggplot2 ggpubr magrittr reshape2 stringr]; }; - rKolada = derive2 { name="rKolada"; version="0.2.0"; sha256="0ikyjzg8xbzyah37dpfwq2slssz956irm4dj8b7zv6x9qxi09gj9"; depends=[dplyr glue httr jsonlite magrittr purrr rlang stringr tibble tidyr urltools]; }; rLDCP = derive2 { name="rLDCP"; version="1.0.2"; sha256="0k7zc1xyqmcl7070hhpqw1d2k1ij6bd4wjym8cw263pds2n7nx21"; depends=[XML]; }; rLFT = derive2 { name="rLFT"; version="1.0.1"; sha256="0d86z5ckhkavgr2xi9pk7pw8ss3whrssa7na43kj0pirax9cys4z"; depends=[Rcpp sf]; }; rLTP = derive2 { name="rLTP"; version="0.1.4"; sha256="04w432m03xwh0szshsrfw5h7wy43q4lj8z0y07k8w6gsf27cy5bx"; depends=[RCurl]; }; @@ -14664,30 +14726,32 @@ in with self; { rSQM = derive2 { name="rSQM"; version="1.3.14"; sha256="0m69n2pnfv2085dln6p149a5gw0gif9xk00xmad5s9j68hwjdmym"; depends=[dplyr EcoHydRology ggplot2 gsubfn mise ncdf4 qmap reshape2 stringr yaml zoo]; }; rStrava = derive2 { name="rStrava"; version="1.1.4"; sha256="00y400znkwyr6y33wiz0jikpa31a60hdcmsi9x3724zwjh28vynj"; depends=[bitops dplyr geosphere ggplot2 ggrepel googleway httpuv httr magrittr plyr purrr RCurl rvest tibble tidyr V8 XML xml2]; }; rTG = derive2 { name="rTG"; version="0.2.2"; sha256="0f1syh2v8a0klcz7rvi8nrn1qv8rjl69ssrliqnh2zpy7c6ck9xs"; depends=[brnn dplyr ggplot2 knitr magrittr mgcv]; }; + rTLS = derive2 { name="rTLS"; version="0.2.5.1"; sha256="1j7pp8x7w87sj9z85jz3mi5x65irp2r82025qclna84yjcdd6p70"; depends=[alphashape3d boot data_table doSNOW foreach Rcpp RcppArmadillo RcppHNSW RcppProgress rgeos rgl sp]; }; rTRNG = derive2 { name="rTRNG"; version="4.23.1-1"; sha256="0jlkr57afkg6axkdk020rd3nybx1qzwvy1hjgfw8fwvm79x0kpr7"; depends=[Rcpp RcppParallel]; }; rTableICC = derive2 { name="rTableICC"; version="1.0.7"; sha256="1z896675kmm9p5dnmcnsz2205ynf05laqcxvlc9y0g5i0x8rf8v6"; depends=[aster partitions]; }; rTensor = derive2 { name="rTensor"; version="1.4.8"; sha256="1ks4rwaish24sg5gc2jkfdqfq6h8gh9f3wdxk3dxjgpwjqwijz8f"; depends=[]; }; rTephra = derive2 { name="rTephra"; version="0.1"; sha256="045f2sp2j4hiwa9k1vs6cxr59x1yr34jq1z2crasxflsxbwa3xz8"; depends=[]; }; rTorch = derive2 { name="rTorch"; version="0.4.2"; sha256="03a9vls09mgd77xm1q1h1pqw4q026rdibbjr218706h4iqphrqm7"; depends=[jsonlite reticulate rstudioapi]; }; - rUM = derive2 { name="rUM"; version="0.3.0"; sha256="0b9p55mikgjxyv5qivng26m0kijpnl92qmzkgfj1n33m9ngcxk13"; depends=[bookdown conflicted rmarkdown table1 tidyverse]; }; + rUM = derive2 { name="rUM"; version="0.3.1"; sha256="092si35ii0gyphnk3k02zaw9bykf8sw0mbzvgrkafhqrqsscmdp6"; depends=[bookdown conflicted rmarkdown table1 tidyverse]; }; rWBclimate = derive2 { name="rWBclimate"; version="0.1.3"; sha256="0vs56hx7a85pw4jx8nb8bdlr9dbkl4zdhzhqsm0505xc3qz18vxh"; depends=[ggplot2 httr jsonlite plyr reshape2 rgdal sp]; }; rWind = derive2 { name="rWind"; version="1.1.7"; sha256="1dvzkhi9hbxd9wvggcbkfx7hxaxjssbmfnqsc7qakj8pkbvr7nax"; depends=[gdistance lubridate Matrix raster]; }; rWishart = derive2 { name="rWishart"; version="0.1.2"; sha256="0wzijc454mrvmggb7a5jqwjbmk0kzr4bmy0iwniz5cn343pr1rri"; depends=[lazyeval MASS Matrix]; }; rYoutheria = derive2 { name="rYoutheria"; version="1.0.3"; sha256="1r63ggy4knwzxnpjkmsn7zwmwfaznm8mmxl7r9ph10wz4sblgygl"; depends=[plyr RCurl reshape2 RJSONIO]; }; ra4bayesmeta = derive2 { name="ra4bayesmeta"; version="1.0-7"; sha256="07fcjqw8w787pcfzjxxwq6160433ms6xk9qrvvm8ybxd7n0f5i44"; depends=[bayesmeta]; }; rabi = derive2 { name="rabi"; version="1.0.2"; sha256="0jndx1gvsnsv1xrx3ismgvjp7d4kj3436zcawvw32c5klvxx0y4j"; depends=[numbers polynom shiny stringdist]; }; + racademyocean = derive2 { name="racademyocean"; version="0.1.0"; sha256="0xgsjg7ck532fzwyn62pn1hq9khkw0i1pdcam09j5l24ny1akajw"; depends=[cli dplyr httr2 pbapply purrr rappdirs retry rlang stringr tidyr withr]; }; raceland = derive2 { name="raceland"; version="1.1.1"; sha256="1sb56id7h1nm34a7kf6abfxwh4kmnnzc51x23cijq6fd3jm4ggnr"; depends=[comat fasterize plotwidgets raster Rcpp RcppArmadillo rgdal sf]; }; racir = derive2 { name="racir"; version="2.0.0"; sha256="0qpjnaifx4z1jvyrc8p5jny0ci20w2ri1rs68sv9b93nkaiixnps"; depends=[]; }; ractivecampaign = derive2 { name="ractivecampaign"; version="0.2.0"; sha256="1l7266qryba2zijgs7xj4p073l69q0iin6qgsbnn7dafmggv5mlr"; depends=[cli dplyr httr pbapply retry stringr tidyr]; }; radar = derive2 { name="radar"; version="1.0.0"; sha256="1wh5j3cfbj01jx2kbm9ca5cqhbb0vw7ifjn426bllm4lbbd8l273"; depends=[]; }; radarBoxplot = derive2 { name="radarBoxplot"; version="1.0.5"; sha256="1lmgh8j3c6jiiwpdz9l5zd07xcv87laxnj789bpqnmxa0szsfngl"; depends=[]; }; radarchart = derive2 { name="radarchart"; version="0.3.1"; sha256="0gcxnbgj8ja1m4wzhbjy67m6zphf0c5ni9yx7sr7f0abm03ry753"; depends=[htmltools htmlwidgets]; }; - radiant = derive2 { name="radiant"; version="1.4.0"; sha256="1ippx0gzizrb00m8apmzfw5ahgnfsrja94dxd3gylai7c969f1d5"; depends=[r_import radiant_basics radiant_data radiant_design radiant_model radiant_multivariate shiny]; }; - radiant_basics = derive2 { name="radiant.basics"; version="1.4.0"; sha256="0ah3spq56w42lla38d9p0d3lkgvbvlvbpj6g9l3vjqafzp30sqzp"; depends=[dplyr ggplot2 lubridate magrittr patchwork polycor psych r_import radiant_data scales shiny tidyr]; }; + radiant = derive2 { name="radiant"; version="1.4.1"; sha256="1srvblfpfzaf5bspskkgvp4jm9y9d8n9gvvpgyjxmp5zm01s9bgv"; depends=[r_import radiant_basics radiant_data radiant_design radiant_model radiant_multivariate shiny]; }; + radiant_basics = derive2 { name="radiant.basics"; version="1.4.1"; sha256="1gjl5nn7xra94n2if0idq43a1qv4x3v7rf2qsx8aqvl9zy9z7i7s"; depends=[dplyr ggplot2 lubridate magrittr patchwork polycor psych r_import radiant_data scales shiny tidyr]; }; radiant_data = derive2 { name="radiant.data"; version="1.4.1"; sha256="12x4nz5n6yz1a67ji79pwvznp9flmn50hpp9y9sfhixir7dvwy27"; depends=[base64enc broom car curl dplyr DT ggplot2 glue jsonlite knitr lubridate magrittr markdown MASS patchwork plotly psych r_import randomizr readr readxl rlang rmarkdown rstudioapi scales shiny shinyAce shinyFiles stringi tibble tidyr writexl]; }; - radiant_design = derive2 { name="radiant.design"; version="1.3.5"; sha256="1514s21jybyvpi2sx06xsxfrzgg07x7xxhwsazc61v3w1mllj2xw"; depends=[AlgDesign dplyr magrittr mvtnorm polycor pwr r_import radiant_data randomizr shiny]; }; - radiant_model = derive2 { name="radiant.model"; version="1.4.1"; sha256="0slll2lc24sy8ga69h8mhffp1idp36jclf8v83y58q9fz7ps1y8k"; depends=[broom car data_tree DiagrammeR dplyr e1071 ggplot2 ggrepel lubridate magrittr NeuralNetTools nnet patchwork pdp psych r_import radiant_basics radiant_data ranger rlang rpart sandwich shiny stringr tidyr xgboost yaml]; }; - radiant_multivariate = derive2 { name="radiant.multivariate"; version="1.3.5"; sha256="1khgy3zj0q155dyky1bd2wfdj6r8jgw8aa6a2nj0rbnwa5zam913"; depends=[car clustMixType dplyr ggplot2 ggrepel gower GPArotation lubridate magrittr MASS patchwork polycor psych r_import radiant_data radiant_model rlang scales shiny]; }; + radiant_design = derive2 { name="radiant.design"; version="1.4.1"; sha256="062psfkadr3i23j4w7i4fl1qfgzbjpcac7fyxqgfh5fkc7d393r4"; depends=[AlgDesign dplyr magrittr mvtnorm polycor pwr r_import radiant_data randomizr shiny]; }; + radiant_model = derive2 { name="radiant.model"; version="1.4.2"; sha256="1syfj78lhxz9fg7g9ljansd63bglvh7s6v83939l3l1s3xwmbjla"; depends=[broom car data_tree DiagrammeR dplyr e1071 ggplot2 ggrepel lubridate magrittr NeuralNetTools nnet patchwork pdp psych r_import radiant_basics radiant_data ranger rlang rpart sandwich shiny stringr tidyr xgboost yaml]; }; + radiant_multivariate = derive2 { name="radiant.multivariate"; version="1.4.1"; sha256="0k48g3m98ziwpdcdfz76j789slh81siq07cmfb6hxaw1j8dzv4x8"; depends=[car clustMixType dplyr ggplot2 ggrepel gower GPArotation lubridate magrittr MASS patchwork polycor psych r_import radiant_data radiant_model rlang scales shiny]; }; radir = derive2 { name="radir"; version="1.0.4"; sha256="12a99ig3n6kp5wa5rjp2w1nal4qqjs6vq05d3lrqcyl3bind6lqb"; depends=[hermite]; }; radix = derive2 { name="radix"; version="0.6"; sha256="0290n0yax8649srdjbq4439h0d9f6jsmxayyhp86igcnszcxilnb"; depends=[base64enc bookdown digest downloader htmltools jsonlite knitr lubridate mime png progress rmarkdown rprojroot rstudioapi stringr whisker xfun xml2 yaml]; }; radlibs = derive2 { name="radlibs"; version="0.2.0"; sha256="1xl7pacqgiv68ay7mkr6bkx3rqqr7z8b9yh42n4zm7ybqfxbx6dr"; depends=[data_table lexicon stringr]; }; @@ -14733,7 +14797,6 @@ in with self; { randomizeBE = derive2 { name="randomizeBE"; version="0.3-5"; sha256="08yfdrf56i8php48ycilc79jk7ms0f6k40swg56mccnqm2yb3b12"; depends=[]; }; randomizeR = derive2 { name="randomizeR"; version="2.0.0"; sha256="1bcdh245lh5a2yim00m2cgcmlcjm2vyba813026v0a4c42gr3b8x"; depends=[ggplot2 plotrix survival]; }; randomizr = derive2 { name="randomizr"; version="0.20.0"; sha256="0dljyfldnardaps3fq6vi5wcs9x6qfaq5apapa78c51lnaa6fn9h"; depends=[]; }; - randomsearch = derive2 { name="randomsearch"; version="0.2.0"; sha256="0ywr4ms66p5nmq8bzy04gbvmpp0nhfyf8rvynhr2c4alqva9x3yi"; depends=[checkmate fs parallelMap ParamHelpers smoof]; }; randquotes = derive2 { name="randquotes"; version="0.1.1"; sha256="0fj9vx0c4059511wka7ip30yz87y144pz7ny840gp72qm73pp8li"; depends=[curl httr jsonlite xml2]; }; randtests = derive2 { name="randtests"; version="1.0"; sha256="03z3kxl4x0l91dsv65ld9kgc58z82ld1f4lk18i18dpvwcgkqk82"; depends=[]; }; randtoolbox = derive2 { name="randtoolbox"; version="1.31.1"; sha256="1b9vjzqg014hxp1vfb62m01d7xim5vmpbyxzlbll49bqas0jx69h"; depends=[rngWELL]; }; @@ -14743,7 +14806,8 @@ in with self; { rangemap = derive2 { name="rangemap"; version="0.1.18"; sha256="17ycliswmsrc1rvyxj2ik2rs7f061dvam6ck0pm6myj52m2xg781"; depends=[concaveman dplyr maps maptools raster rgdal rgeos rgl rnaturalearthdata scales sf sp spatial]; }; ranger = derive2 { name="ranger"; version="0.13.1"; sha256="02idcc6zbdz4wsi1mcwh7qyhmlbwvnzxwkdvvppxw7n2rh54z4v0"; depends=[Matrix Rcpp RcppEigen]; }; rankFD = derive2 { name="rankFD"; version="0.1.0"; sha256="1qqdqbyr0kgjn83prfg5b5f5qsfs0gxxadzkxzd76s0yhryps6mm"; depends=[coin lattice MASS multcomp mvtnorm]; }; - rankUncertainty = derive2 { name="rankUncertainty"; version="1.0.1.0"; sha256="13xmc37v9w15jlcpbn96axpwqjwh8w3k1dgiwipzgwvd065qvj3f"; depends=[cpp11 magrittr Rcpp]; }; + rankUncertainty = derive2 { name="rankUncertainty"; version="1.0.2.0"; sha256="0w9b3vdlx2kjviz4790lrmbzb8i1lrckiy1jxzl9kxycp1kjqkwa"; depends=[cpp11 magrittr Rcpp]; }; + rankdifferencetest = derive2 { name="rankdifferencetest"; version="2021-11-25"; sha256="11isc6fjaicyibnbc315036wp7m670ja6kg4xq5s2x72k076v55f"; depends=[coin modeltools Rdpack]; }; rankdist = derive2 { name="rankdist"; version="1.1.4"; sha256="1xqrkss8d5vv3blqpvrvdczsygphbx259hy9j7w9b2ahssw8cjr5"; depends=[hash optimx permute Rcpp]; }; rankhazard = derive2 { name="rankhazard"; version="1.1.0"; sha256="0kljn9b74alrd22b5pwfnamdbaqi2wa2z6yzpmgpfs3x0hv72fw7"; depends=[survival]; }; ranlip = derive2 { name="ranlip"; version="1.0.1"; sha256="04jh7m8gmz0b4h507amnj708sg5qf4fzawybss01681hsnb3swnz"; depends=[Rcpp]; }; @@ -14771,7 +14835,7 @@ in with self; { rasterImage = derive2 { name="rasterImage"; version="0.4.0"; sha256="191m5k1rbbwziznmxbsq4g55afkw8gb5011i70f3wx3dscr3phxz"; depends=[plotrix]; }; rasterKernelEstimates = derive2 { name="rasterKernelEstimates"; version="1.0.2"; sha256="0az96k8l7yjya5mg5ckda43qy9h8iad5gyyxi1ycld3kzcwiinhj"; depends=[raster]; }; rasterList = derive2 { name="rasterList"; version="0.5.8"; sha256="0q7apglxzpah04463z07cpkzyd6l6dbbdhm601brzh6yk75z20vh"; depends=[raster]; }; - rasterVis = derive2 { name="rasterVis"; version="0.51.0"; sha256="1gkn5na7cspnh3qpmi4k5n65crmp8c2s106g8hh51lsdvm5369aj"; depends=[hexbin lattice latticeExtra raster RColorBrewer sp terra viridisLite zoo]; }; + rasterVis = derive2 { name="rasterVis"; version="0.51.1"; sha256="1mg11njzajx9az6xjghjl2sna6wzs85ga8fhy9w43l2n8icsfbr2"; depends=[hexbin lattice latticeExtra raster RColorBrewer sp terra viridisLite zoo]; }; rasterdiv = derive2 { name="rasterdiv"; version="0.2-3"; sha256="1n0zrncda3nk4x8l9wb0acdx25dlki9wwrg874qwhd73cx0iy0rp"; depends=[foreach progress proxy raster svMisc]; }; rasterize = derive2 { name="rasterize"; version="0.1"; sha256="18nrhmq1qmi05rkyr86xsyc8nz0fbdpf2d45h62bbfzbfynqd4qy"; depends=[png]; }; rasterly = derive2 { name="rasterly"; version="0.2.0"; sha256="1fv0ayh8r78qss7ikcwnj0i5x8iyz4c3icsfb554zji9bw30x7qr"; depends=[data_table ggplot2 magrittr plotly Rcpp rlang]; }; @@ -14793,7 +14857,7 @@ in with self; { rawKS = derive2 { name="rawKS"; version="0.1.0"; sha256="1yiw9imhgij49qbm9hk6psb73zngqmxxwnaxq144ydwb7fbk6j0z"; depends=[dplyr ggplot2 magrittr ROCR tidyr]; }; raws_profile = derive2 { name="raws.profile"; version="0.1.0"; sha256="04f7wk7x9j3rb6nn3zqss9vw0h9a4vpcjyilc2vqy0fm2by41xkg"; depends=[stringr tibble withr]; }; rayimage = derive2 { name="rayimage"; version="0.6.2"; sha256="1zhs4whbxvn8gn0ddxpd8qgnv2f75nlvrz6x5y0ac516bgrapz5z"; depends=[jpeg magrittr png progress Rcpp RcppArmadillo]; }; - rayrender = derive2 { name="rayrender"; version="0.21.2"; sha256="0s88p9yqm2xxvwpxbnmhs3yay1gd904dgsik9fy6551cym1asl1n"; depends=[assertthat decido magrittr png progress purrr raster rayimage Rcpp RcppThread spacefillr tibble]; }; + rayrender = derive2 { name="rayrender"; version="0.23.6"; sha256="05pnj42mqrpkxr59fmap0j9s66aaf6hjsbgmnw4gnaal6x9xxijm"; depends=[decido magrittr png progress purrr raster rayimage Rcpp RcppThread spacefillr tibble]; }; rayshader = derive2 { name="rayshader"; version="0.24.10"; sha256="1wdqbbk8f0vxha0awgfv4c8n7yndy2k1q6f3rkr3f5j84wwqfjbx"; depends=[doParallel foreach magrittr png progress raster rayimage Rcpp RcppArmadillo rgl scales terrainmeshr]; }; raytracing = derive2 { name="raytracing"; version="0.1.0"; sha256="052j053l4104pk7cbkkqrj3kkiip9lv2lf0xl2xsray62n6p07m4"; depends=[ncdf4 sf units]; }; rayvertex = derive2 { name="rayvertex"; version="0.3.3"; sha256="1xigdspf3jybk48i60141kjk34vig9drl7sdn1pi5zsh3pi4w5rx"; depends=[digest magrittr png rayimage Rcpp RcppThread spacefillr]; }; @@ -14839,7 +14903,7 @@ in with self; { rcc = derive2 { name="rcc"; version="1.0.0"; sha256="0a77d54c9qahhsjzpa0436ddsj4j44013r7rbxm0fjz04c0d2921"; depends=[]; }; rccdates = derive2 { name="rccdates"; version="1.0.0"; sha256="1f87qlw62am2qy1zzrz91vmsn8axhld44gak61xa7046675hm98s"; depends=[rccmisc]; }; rccmisc = derive2 { name="rccmisc"; version="0.3.7"; sha256="171s2ll759xjdnx0z24ih5ix2vcp4qnmf1nf107gij6wv8k450ab"; depends=[dplyr]; }; - rcdd = derive2 { name="rcdd"; version="1.4"; sha256="02jj1lpk4kvjh5484lbdrdlx2ffk9qdxys7afyakd5kl6swqalz2"; depends=[]; }; + rcdd = derive2 { name="rcdd"; version="1.5"; sha256="0zxx0qvv26ba30jkm8mvca4h59rqklay4jwazpcw7h9dzp4189jr"; depends=[]; }; rcdk = derive2 { name="rcdk"; version="3.6.0"; sha256="0v3i1402hrlp3sap3ryjd63gac8wbcwj7lfa3smk1agqy659glcx"; depends=[fingerprint iterators itertools png rcdklibs rJava]; }; rcdklibs = derive2 { name="rcdklibs"; version="2.3"; sha256="16ijvzsc1irpz1z2xd82i2saafsvpn0x5lr54c5gx9bfb35gacyp"; depends=[rJava]; }; rchallenge = derive2 { name="rchallenge"; version="1.3.4"; sha256="0i402p6ccjn10ix5nln30pab5nd78hg5q4ivvgc4i99nx7aq0xpx"; depends=[knitr rmarkdown]; }; @@ -14853,7 +14917,7 @@ in with self; { rco = derive2 { name="rco"; version="1.0.2"; sha256="1ch7ak802ri4jr10jqvhvdi6q9fhyhql15ja395xfv6j81d5cmia"; depends=[]; }; rcol = derive2 { name="rcol"; version="0.2.0"; sha256="1ypn5fiwhyvfnmjs2davqqhxf5pjg7f0101v40bqrv4jz563h5n1"; depends=[crul data_table glue jsonlite tibble]; }; rcolors = derive2 { name="rcolors"; version="0.1.0"; sha256="19lkwd1wdwq9if957qjgrz9mq6s8x49dig8snivhw9ksffcfy4xp"; depends=[magrittr]; }; - rcompanion = derive2 { name="rcompanion"; version="2.4.1"; sha256="047w6m2llw0iybrc4g06mfcryjgg18kf3la4n8sa0014ygbmw3r3"; depends=[boot coin DescTools lmtest multcompView nortest plyr]; }; + rcompanion = derive2 { name="rcompanion"; version="2.4.6"; sha256="158jlwmnyldf77r6hrmjx502fzd86ibpmp54zvk6hn1z45svyq77"; depends=[boot coin DescTools lmtest multcompView nortest plyr]; }; rcompendium = derive2 { name="rcompendium"; version="0.5.1"; sha256="0zg7051c4wg1jbdf7hshswy53y24x8h8myhshvg9z2pg8mvd8sir"; depends=[clisymbols crayon devtools gert gh gtools rmarkdown rstudioapi stringr usethis xfun]; }; rcoreoa = derive2 { name="rcoreoa"; version="0.4.0"; sha256="0q5dprz0ag04w265bk7isd2lr61nahf223qza47m0izd9nyi9h8a"; depends=[crul hoardr jsonlite pdftools]; }; rcorpora = derive2 { name="rcorpora"; version="2.0.0"; sha256="1b8xa81mn3afadz77576vda9b0d99f1k096drxrpqd989g993aqy"; depends=[jsonlite]; }; @@ -14945,7 +15009,7 @@ in with self; { recexcavAAR = derive2 { name="recexcavAAR"; version="0.3.0"; sha256="0b91jbgqzkgzvk658ckk639yyz1daa0xql3qgl0kzgqg68d53x20"; depends=[kriging Rcpp]; }; rechonest = derive2 { name="rechonest"; version="1.2"; sha256="0vpff8q5p6in7vjyl62bx3wmksravcg4mpx20qlgy5ia47vyhqp2"; depends=[httr jsonlite RCurl]; }; recipes = derive2 { name="recipes"; version="0.1.17"; sha256="0gbdc5kvbn14s5zrf4vrdjvkfajs00p7vvb433ii0lqnl07bl87d"; depends=[dplyr ellipsis generics glue gower ipred lifecycle lubridate magrittr Matrix purrr rlang tibble tidyr tidyselect timeDate vctrs withr]; }; - reclin = derive2 { name="reclin"; version="0.1.1"; sha256="15qrdgjmclffivnljgmmipws9ks41fj4q40wnq0fk14mbv2045g2"; depends=[dplyr ldat lpSolve lvec Rcpp stringdist]; }; + reclin = derive2 { name="reclin"; version="0.1.2"; sha256="0bskmlysc12g5invscr0vvshy8bp1gxjx4wihwbbfzmnk2951qrc"; depends=[dplyr ldat lpSolve lvec Rcpp stringdist]; }; recluster = derive2 { name="recluster"; version="2.9"; sha256="1nz5w4v5hhb3qjwxixc526gqsmr1imw582l9gj2acwar4z9mixjp"; depends=[ape cluster phangorn phytools picante plotrix vegan]; }; recmap = derive2 { name="recmap"; version="1.0.11"; sha256="08gbbgm6494s490lw9c85j1bvmd6wnk9r43dh8x4lijb3fhs0dq0"; depends=[GA Rcpp sp]; }; recodeflow = derive2 { name="recodeflow"; version="0.1.0"; sha256="0qi5y1rbdw6dcvkl8gw9fh7rcb0f6ckig8464sgxslgf7cdk2gcz"; depends=[dplyr haven magrittr sjlabelled stringr tidyr XML]; }; @@ -14983,6 +15047,7 @@ in with self; { refset = derive2 { name="refset"; version="0.1.1"; sha256="1xbwvm9066g3f7pd34z5jh04vph4ddy2lkcgmf4kiwa1k5czpwg1"; depends=[]; }; refuge = derive2 { name="refuge"; version="0.3.3"; sha256="0cq62rgawlam4j4h4sz4zvkgi0x21k4syy4vh7i40bxrq0z9ysyz"; depends=[dplyr httr jsonlite tibble]; }; refund = derive2 { name="refund"; version="0.1-24"; sha256="089dl0vjn474gka9j18fk125aqvwd2gx61g1rv8cp6m0caq99pzg"; depends=[boot fda gamm4 ggplot2 grpreg lattice lme4 magic MASS Matrix mgcv nlme pbs RLRsim]; }; + refund_shiny = derive2 { name="refund.shiny"; version="0.4.1"; sha256="0pjcb20p9mjj08lk27ig78gj8sq4lwljmq52bszm9qdhyhhpap5m"; depends=[dplyr ggplot2 gridExtra lme4 plotly refund registr reshape2 shiny tidyr]; }; regDIF = derive2 { name="regDIF"; version="1.0.0"; sha256="1gw4ymg6qk1v4nkayqw706f2la0yfkwvdjlam4wc00mnjjbxgnyd"; depends=[statmod]; }; regRSM = derive2 { name="regRSM"; version="0.5"; sha256="0nbp3yjk9r7qvwm7wla39155rmqnvpdb720iq3b0hcy1bbsxbk9s"; depends=[doParallel foreach Rmpi]; }; regclass = derive2 { name="regclass"; version="1.6"; sha256="0m974k3yhf0dgv5f1qjs8c53mam0cll3cjn35ywfrmlfla0wlhf5"; depends=[bestglm leaps randomForest rpart rpart_plot VGAM]; }; @@ -15012,7 +15077,7 @@ in with self; { rehh = derive2 { name="rehh"; version="3.2.2"; sha256="1kgabmg0vq8psdhkfcpdv3iy8gj5hmqzhb8bs8rld49nhnnbqs2x"; depends=[rehh_data]; }; rehh_data = derive2 { name="rehh.data"; version="1.0.0"; sha256="1jkvwmnnmfa7iyvrabgcfzw3vfzx0dlgq47s6yf4zayi437v4di0"; depends=[]; }; rehydratoR = derive2 { name="rehydratoR"; version="0.5.2"; sha256="1d94m9hv1l72l9lph2vzbq4qqbfcgyhv2qk82p9vb8l2ckavjzvv"; depends=[dplyr jsonlite rtweet tibble]; }; - reinstallr = derive2 { name="reinstallr"; version="0.1.4"; sha256="1fcmy2cyqy4zwh815j2jbmziaiq6kypwsnj5bx0f10dlq3522m5q"; depends=[]; }; + reinstallr = derive2 { name="reinstallr"; version="0.1.5"; sha256="0yr1fzfahxqffjh5vm6y6b0iay8p0cirlzq2z4hlz7nci57fx5yr"; depends=[]; }; reinsureR = derive2 { name="reinsureR"; version="0.1.0"; sha256="19ayikzcq6z4i7xrlby76yy2nwvrsv6xdfrmvzyr7rz934flh8kd"; depends=[data_table dplyr ggplot2 viridis viridisLite]; }; relMix = derive2 { name="relMix"; version="1.3.3"; sha256="03zzmsx2i7ib1mhdfk5igvr1winl9g2dfjqz2kzvcx3rl7l6hjym"; depends=[Familias gWidgets2 gWidgets2tcltk]; }; relSim = derive2 { name="relSim"; version="0.3-1"; sha256="1d6yihapfyjlfw87l370wyfyby7ivvykx04qljffdv3hi801gn7f"; depends=[multicool Rcpp rvest stringr xml2 xtable]; }; @@ -15029,7 +15094,7 @@ in with self; { reliaR = derive2 { name="reliaR"; version="0.01"; sha256="000nafjp386nzd0n57hshmjzippiha6s6c4nfrcwl059dzmi088i"; depends=[]; }; reliabilitydiag = derive2 { name="reliabilitydiag"; version="0.2.0"; sha256="0qgvyjc512gwr0rbgxkkf9ipvxfl9y07215f1pdk15xhzkk94m53"; depends=[bde dplyr ggExtra ggplot2 magrittr purrr rlang tibble tidyr vctrs]; }; relimp = derive2 { name="relimp"; version="1.0-5"; sha256="0ydn82g8xdqzhf34187080bbpcpw1zdjbj2i3dv1d6d35vvprb5c"; depends=[]; }; - relliptical = derive2 { name="relliptical"; version="0.1.0"; sha256="122gv5pckx87hsczfqsac6nwh54a6y1ka066aab2zlrhrlx0wx2y"; depends=[FuzzyNumbers_Ext_2 matrixcalc Rcpp RcppArmadillo RcppEigen RcppNumerical Rdpack Ryacas0]; }; + relliptical = derive2 { name="relliptical"; version="0.9.0"; sha256="1smrbrxaj0jwfsl07pk46s0iqcb1xmww1yzr73kv43ld6py9n4sv"; depends=[FuzzyNumbers_Ext_2 matrixcalc Rcpp RcppArmadillo RcppEigen RcppNumerical Rdpack Ryacas0]; }; relsurv = derive2 { name="relsurv"; version="2.2-5"; sha256="0bqmr493jdk3vkw386gs2bk688bja5yg14ax1rb88bf6i6fqqcy8"; depends=[date survival]; }; rem = derive2 { name="rem"; version="1.3.1"; sha256="1q4p26irhhl1lvc0ydv9wmng1y635zm16szpl7gwq1kyn2p90rai"; depends=[doParallel foreach Rcpp]; }; rema = derive2 { name="rema"; version="0.0.1"; sha256="15b68pynac9ff9bina0mf94absvfsn21xcdmvd4lbl97pxwj83ph"; depends=[progress Rcpp Rdpack]; }; @@ -15079,18 +15144,18 @@ in with self; { request = derive2 { name="request"; version="0.1.0"; sha256="1q7zd6q00gdqmgq7s7nq1ixmns8zn2amr5zah9rwnsn8dkllj9yh"; depends=[curl httr jsonlite lazyeval magrittr R6 whisker]; }; requiRements = derive2 { name="requiRements"; version="0.0.1"; sha256="17afbpny5j2rssi173k7sxi9q2syskjh8h0h89z24dqsbh3947mz"; depends=[remotes]; }; requireR = derive2 { name="requireR"; version="1.0.0.1"; sha256="192l7i3q7s2a6n737an3fn258agjsdzh0q2w0vc8jbz7v4f3i92d"; depends=[]; }; - rerddap = derive2 { name="rerddap"; version="0.7.6"; sha256="0nfcwpspjvdqr00azfz47h5p513dnfx828hxg2wg13h3hdzh651g"; depends=[crul data_table digest dplyr hoardr jsonlite ncdf4 tibble xml2]; }; + rerddap = derive2 { name="rerddap"; version="0.8.0"; sha256="0jfmbaybm1shmkj9fn7n403hfbhmhbclkpw95709r3bazqmfqiys"; depends=[crul data_table digest dplyr hoardr jsonlite ncdf4 tibble xml2]; }; rerddapXtracto = derive2 { name="rerddapXtracto"; version="1.1.2"; sha256="1xca6bqzpk8hy04vdi8g0psddaa88bd4vkwcymyl6cy1p6xkqya5"; depends=[abind dplyr ggplot2 httr maps ncdf4 parsedate plotdap readr rerddap sf sp]; }; resample = derive2 { name="resample"; version="0.4"; sha256="1rckzm2p0rkf42isc47x72j17xqrg8b7jpc440kn24mqw4szgmgh"; depends=[]; }; resampledata = derive2 { name="resampledata"; version="0.3.1"; sha256="1nxjqvxxvycccmh1n7lpc4k8zmwnciicfr5rzfid1icij5fzw3ak"; depends=[]; }; rescue = derive2 { name="rescue"; version="1.0.3"; sha256="0wq4ka1a7yhbjwr99ngykhn2r3czn3rqi63r6jn46pz15vnicwad"; depends=[data_table dbscan igraph irlba Matrix reticulate]; }; - resemble = derive2 { name="resemble"; version="2.0.0"; sha256="1vr4aydwyipspkw662qw50219r30ms05i567j66yv1ccs574dw6a"; depends=[data_table foreach iterators lifecycle magrittr mathjaxr Rcpp RcppArmadillo]; }; reservoir = derive2 { name="reservoir"; version="1.1.5"; sha256="1qvjq8j2gxp6b8m3k3822f9na8a1kbwzzsmq70m763dcq293rgiz"; depends=[gtools]; }; resevol = derive2 { name="resevol"; version="0.2.0.8"; sha256="1s9g034cjrafj8lkk3gahd05cz8kkgal2lsvm4nfx3s7hx91q0ww"; depends=[]; }; reshape = derive2 { name="reshape"; version="0.8.8"; sha256="0s6i0sqxg1vldxs6miv8mi0zydxbqzgpmzfiwkj8y7jix3yrfmad"; depends=[plyr]; }; reshape2 = derive2 { name="reshape2"; version="1.4.4"; sha256="1n0jrajpvc8hjkh9z4g8bwq63qy5vy5cgl2pzjardyih4ngcz3fq"; depends=[plyr Rcpp stringr]; }; resourcer = derive2 { name="resourcer"; version="1.1.1"; sha256="0zjr12fxjlw9zwa5n3l7r2m6vrksvczdzyhq3aj3hzqbm148z1cq"; depends=[httr R6]; }; respirometry = derive2 { name="respirometry"; version="1.3.0"; sha256="1ffhkvf8a8zhkysghd636k47bl7k5bdwkkg4m0pr1zlxpfrif82c"; depends=[birk lubridate marelac measurements minpack_lm PKNCA seacarb segmented]; }; + responsePatterns = derive2 { name="responsePatterns"; version="0.1.0"; sha256="0iyx35kq82w18v8c7lfz7x31c2cgywn4xh8hg0ad3gsdygadq8hq"; depends=[]; }; restatapi = derive2 { name="restatapi"; version="0.12.3"; sha256="1jwhc9igcxa8k3hnnf4vpharbh1scbb7m7zvjyv2axbjjz0hr8hs"; depends=[data_table rjson xml2]; }; restaurant = derive2 { name="restaurant"; version="0.1.0"; sha256="1dr9nw5xkll1wnra2xi8dg2yiv85nibdg1i9lsn44v7cgr9vb32j"; depends=[]; }; restfulr = derive2 { name="restfulr"; version="0.0.13"; sha256="1dk45mzrr6ka92yjz7hfhkj12kpx1wg4szv1h1mg80mgga4ganbv"; depends=[RCurl rjson S4Vectors XML yaml]; }; @@ -15105,7 +15170,6 @@ in with self; { retistruct = derive2 { name="retistruct"; version="0.6.3"; sha256="1zij37n2ja3yx6n1agdkb3lj42p01parcg6djv60bng9c2qq0wsl"; depends=[foreign geometry png R_matlab R6 rgl RImageJROI RTriangle sp ttutils]; }; retractcheck = derive2 { name="retractcheck"; version="1.0.0"; sha256="1c4p8afh9g359s560sswcys3manc0lqvk0aqgvd09p4rpzls2dm7"; depends=[httr plyr textreadr]; }; retriever = derive2 { name="retriever"; version="0.2.1"; sha256="0vachj8rzh8g55y18hz85bsrzr86614frdmr7wz6hszgiq8qgcxy"; depends=[pbapply preprocessCore]; }; - retrocombinator = derive2 { name="retrocombinator"; version="1.0.0"; sha256="0ci5cm9ml2gsn0n0scaahpfi8kyn6i0s3fb4mn7m9s83c0ls6xgv"; depends=[dplyr ggplot2 magrittr Rcpp rlang]; }; retrodesign = derive2 { name="retrodesign"; version="0.1.0"; sha256="173jrpzasimplv8vbm8gzpl8aibnsjkgvhz1hd75is0b2l8gnbxy"; depends=[]; }; retroharmonize = derive2 { name="retroharmonize"; version="0.2.0"; sha256="10fwmm91p3dgad99a7imkg9cjlk0gy2bkpmzgfr6s9bp07splj6i"; depends=[assertthat dplyr fs glue haven here labelled magrittr pillar purrr rlang snakecase stringr tibble tidyr tidyselect vctrs]; }; retrosheet = derive2 { name="retrosheet"; version="1.1.4"; sha256="13vicafx3z83wrxhc6d7bk6bd0m49qcd5li2b4j0bgzavrx6clxs"; depends=[httr rvest stringi stringr xml2]; }; @@ -15125,7 +15189,7 @@ in with self; { revulyticsR = derive2 { name="revulyticsR"; version="0.0.3"; sha256="0dz9c26qwasgpp6a5fqh1rgq0hp9dhsrcm1h2hbp0cisri8iwsjf"; depends=[dplyr httr jsonlite magrittr purrr tibble tidyr tidyselect]; }; reweight = derive2 { name="reweight"; version="1.2.1"; sha256="0fv7q1zb3f4vplg3b5ykb1ydwbzmiajgd1ihrxl732ll8rkkfa4v"; depends=[]; }; rewie = derive2 { name="rewie"; version="0.1.0"; sha256="1ysrpd2cqmz27sjj3dh0wpg86685d708kjwiqybwjlw9ap55jb06"; depends=[lme4 MASS plm rockchalk]; }; - rex = derive2 { name="rex"; version="1.2.0"; sha256="0m7bq8db3m5dhf01rw7xc7xy1ciq3m7dfgsl80p8cy4h8vqr3d06"; depends=[lazyeval]; }; + rex = derive2 { name="rex"; version="1.2.1"; sha256="1mmzlc3j7xa0rbjxa369f4sr0iw3gq58g8fmjjxbsjvfq14ychmg"; depends=[lazyeval]; }; rexpokit = derive2 { name="rexpokit"; version="0.26.6.7"; sha256="13zrr5qj96vh50mknlc2pl7gq1kx5ahwk3n9ij4xr67734x3mx1r"; depends=[Rcpp]; }; rextendr = derive2 { name="rextendr"; version="0.2.0"; sha256="0d5nkdphdlyyd9qi3dam16ag89b0h6n38q91pkp71n9xhb4ffrx8"; depends=[brio callr cli desc dplyr glue pkgbuild pkgload purrr rlang rprojroot stringi tibble withr]; }; rfPermute = derive2 { name="rfPermute"; version="2.5"; sha256="0h7p11cfgdl050qldpns8766y8yqp6wvpdpd15xb07z4cgzbymf7"; depends=[abind dplyr ggplot2 gridExtra magrittr plyr randomForest rlang scales swfscMisc tibble tidyr]; }; @@ -15142,6 +15206,7 @@ in with self; { rfisheries = derive2 { name="rfisheries"; version="0.2"; sha256="16j3hn1py8khqadmh81qsg76c62wzqkaq3fn39z0z5mgynmcm62j"; depends=[assertthat data_table ggplot2 httr rjson]; }; rfishnet2 = derive2 { name="rfishnet2"; version="0.2.0"; sha256="0g90h4353kp7szv3971kb4l5x3x08qx4f9ln85n5g3b3zdg77dkz"; depends=[dplyr ggplot2 pracma rworldmap sf]; }; rflexscan = derive2 { name="rflexscan"; version="1.0.0"; sha256="1azjdri1dnxqd128p3iya1x36bbhhrckmj08rp23jzfi5zd71c8s"; depends=[igraph Rcpp rgdal sp]; }; + rflsgen = derive2 { name="rflsgen"; version="0.1.1"; sha256="19iayqfqf22i78ih67yxmmx6p2w3b17qy28hkab1yiig25njfdjr"; depends=[checkmate raster rgdal rJava]; }; rfm = derive2 { name="rfm"; version="0.2.2"; sha256="1s8h9ll4l5xq3m7ib83zrab49p5q4wclk8qiy2hgjr2hq1sb7wak"; depends=[dplyr ggplot2 ggthemes lubridate magrittr RColorBrewer rlang tibble tidyr xplorerr]; }; rfoaas = derive2 { name="rfoaas"; version="2.1.0"; sha256="0w6m3lvfb60a2zfvyc0ksnfllb2ndy45b301vk9f3nr27lxdz6dm"; depends=[httr]; }; rfordummies = derive2 { name="rfordummies"; version="0.1.5"; sha256="1glzc20sbv90fbazy3wh6drqd5dkh47s3fjqzgm78dkmj6gp9hdv"; depends=[openxlsx]; }; @@ -15161,11 +15226,11 @@ in with self; { rgeoprofile = derive2 { name="rgeoprofile"; version="0.2.2"; sha256="1nk3qzwcvvq3n1da480zk047wl738fjyvarakm00wwrbnb3ax70j"; depends=[geosphere leaflet pals RANN raster sp spatstat_geom splancs]; }; rgeos = derive2 { name="rgeos"; version="0.5-8"; sha256="05539shf38slvq38pf92h9q57vmzn2vfqbirl3pbbvvc2j957cqd"; depends=[sp]; }; rgexf = derive2 { name="rgexf"; version="0.16.2"; sha256="00c2zka1n3k7p1l0mlchr063s6x58p9r3fb64d4wgl4rvsq55q3f"; depends=[igraph servr XML]; }; - rgl = derive2 { name="rgl"; version="0.107.14"; sha256="1z5h4wbjj18prcykc96rqcn699pnqw6vybwj2mpbbbdw2lr3q8b7"; depends=[crosstalk htmltools htmlwidgets jsonlite knitr magrittr]; }; + rgl = derive2 { name="rgl"; version="0.108.3"; sha256="0fqkx079z9y5b1gdg6qfz2wpw2j8q3ddflfkd9wwrkyacas6xyc9"; depends=[htmltools htmlwidgets jsonlite knitr magrittr R6]; }; rglobi = derive2 { name="rglobi"; version="0.2.27"; sha256="12rqd92i0n7lgnp57a4pfp1fpnhm8v0lmmlfzcy0d8vhvzwgfhw7"; depends=[curl RCurl readr rjson]; }; rglwidget = derive2 { name="rglwidget"; version="0.2.1"; sha256="0siqxn3gyl98i84p0yha821b4rdrp2i0942mkx819wnf7qwrpqcv"; depends=[rgl]; }; rgnparser = derive2 { name="rgnparser"; version="0.2.0"; sha256="01dmnyyprnayzn21vgdj9058l17kx8z4fisw4bp4lc6yif39q1r9"; depends=[jsonlite readr sys tibble]; }; - rgoogleads = derive2 { name="rgoogleads"; version="0.3.0"; sha256="00sbxcnws0gvn7w2yjzpv2i2kjqzl875l24fnxbz1jfq4xc2npx3"; depends=[cli dplyr gargle httr jsonlite magrittr pbapply purrr rlang rlist rvest snakecase stringr tidyr withr]; }; + rgoogleads = derive2 { name="rgoogleads"; version="0.4.1"; sha256="13fg1swqx761h3jwam0pfg772gagyc3pn551sb75ai44dnji2qwd"; depends=[cachem cli dplyr gargle httr jsonlite magrittr memoise pbapply purrr rappdirs rlang rlist rvest snakecase stringr tidyr withr]; }; rgoogleslides = derive2 { name="rgoogleslides"; version="0.3.2"; sha256="0h9gws1vcf0zdd21d8b65c2yz9kxppp3218h5lhd5iz879ajwa2i"; depends=[assertthat httr jsonlite R6]; }; rgovcan = derive2 { name="rgovcan"; version="1.0.3"; sha256="0b1fk7w3x60y0j74pglv14i0d76f13pzslghrday04qzkxy9smvd"; depends=[ckanr cli crayon crul tibble]; }; rgplates = derive2 { name="rgplates"; version="0.1.0"; sha256="1pxvccyq8m1dbq4rl0fi4vwp6k5w83gjwpga9r182z87cij97j43"; depends=[rgdal sp]; }; @@ -15191,7 +15256,7 @@ in with self; { rhype = derive2 { name="rhype"; version="0.0.1"; sha256="148ssg1rxhw5wsm989fws5dc6lrx23nai22awxmpr1lx06khrm6a"; depends=[R6]; }; ri = derive2 { name="ri"; version="0.9"; sha256="00y01n9cx95bjhdpnh7vi0xd5p6al3sxbjszbyxafn7m9mygmnhv"; depends=[]; }; ri2 = derive2 { name="ri2"; version="0.2.0"; sha256="0zadczx7awymn420hf15sci5z1hq5rpid866gpa1wmrhcyh177nh"; depends=[estimatr generics ggplot2 pbapply randomizr]; }; - ribd = derive2 { name="ribd"; version="1.3.0"; sha256="1vidhghqq2g9v4l7hwq39llbbps8hrfpy1i9s170gak1d38dkciq"; depends=[glue kinship2 pedtools slam]; }; + ribd = derive2 { name="ribd"; version="1.3.1"; sha256="1an3cifgvw7rrsq1plfycpk1yhlsncn83s2f9xl52161iyljwj6g"; depends=[glue kinship2 pedtools slam]; }; ricegeneann = derive2 { name="ricegeneann"; version="1.0.2"; sha256="0wxqp4pfdhvq4mwzjrqi3m9jiayk5bp1ha222mpm4qz1pl41cy9w"; depends=[riceidconverter]; }; riceidconverter = derive2 { name="riceidconverter"; version="1.1.1"; sha256="143f76v3k2q9ddcxf2nzvd04pjgy7p120ln0zkmxpal20c81dwq6"; depends=[dplyr]; }; riceware = derive2 { name="riceware"; version="0.4"; sha256="0pky0bwf10qcdgg9fgysafr35xbmnr9q0jbh56fawj99nbyj3m70"; depends=[random]; }; @@ -15204,13 +15269,13 @@ in with self; { rifle = derive2 { name="rifle"; version="1.0"; sha256="1r0cfj3vzndgiarl9sb38zmpnpm4p8v9l5cm9c1m6g2q9kvpgpbs"; depends=[MASS]; }; rigr = derive2 { name="rigr"; version="1.0.1"; sha256="0cjk03llklml3h6dmdahdbnxanynii64q664fax62dbkncxg5gqa"; depends=[Exact plyr sandwich survival tibble]; }; riingo = derive2 { name="riingo"; version="0.3.1"; sha256="1ww9ps0v1yga9dwb68crbhf56xw2svl7az95ifrdrswyyikj02vj"; depends=[crayon glue httr jsonlite purrr rlang tibble vctrs]; }; - rim = derive2 { name="rim"; version="0.4.1"; sha256="1m3wc8nd2n1s86xxm2gdgz8qq5p3y92xr3xqfcs98ygn2syair9z"; depends=[digest knitr R6 Rcpp stringr]; }; + rim = derive2 { name="rim"; version="0.5.0"; sha256="1q83w7wfivhhfhrph9zhnd02gmihj9h6vhm5rysbm435hxx9h834"; depends=[GlobalOptions knitr R6 Rcpp rmarkdown stringr]; }; rinat = derive2 { name="rinat"; version="0.1.8"; sha256="1jp19scgizfi3qp419k2nkkpjm8zcvcgj85zlsa27sd6fjv6vv6m"; depends=[curl ggplot2 httr jsonlite maps plyr sp]; }; ring = derive2 { name="ring"; version="1.0.3"; sha256="1ljmqq7mngxs59nri36w0cx6a6d85qsbk9v9698hfx9asicv398d"; depends=[R6]; }; ringostat = derive2 { name="ringostat"; version="0.1.3"; sha256="087l2r64hs9f864mnalh0pnbpb54z6gpkqhcb2zv7r8f5cpfggqj"; depends=[cli httr2 lifecycle readr stringr]; }; rintimg = derive2 { name="rintimg"; version="0.1.0"; sha256="0jzs4mdwpzbpl0wchyhl3cpywk25ayaxalr12p4cnjl7vnmdm7dp"; depends=[glue htmltools]; }; rintrojs = derive2 { name="rintrojs"; version="0.3.0"; sha256="00l5mk80gj3xkbf3m1kip566ic98bhd88lh0bg69ybkpk4gifpyw"; depends=[jsonlite shiny]; }; - rio = derive2 { name="rio"; version="0.5.27"; sha256="02nxwg1d2m1h09a6ismhcp71gmq1c8rhbbl98if2v7xsvdn63sz0"; depends=[curl data_table foreign haven openxlsx readxl tibble]; }; + rio = derive2 { name="rio"; version="0.5.29"; sha256="04jlrhyl0791yxwcpp1s8p1hhkljnijlc5iaxpk56h41w63k39lz"; depends=[curl data_table foreign haven openxlsx readxl tibble]; }; rioja = derive2 { name="rioja"; version="0.9-26"; sha256="02af6is38nakzr1hf9688n32m5glk1jyp2d9p4irn0mzk7r6r976"; depends=[mgcv vegan]; }; ripserr = derive2 { name="ripserr"; version="0.1.1"; sha256="1rwsd1yi5vrzdscjgr27fw0d1a6nkc8g2w5hqgqijiwm25h4wl17"; depends=[Rcpp]; }; rise = derive2 { name="rise"; version="1.0.4"; sha256="12r7mbaxp9pjypbpjxlsbqg7spw80gjgm2w0lsvgvclffc50a6ni"; depends=[dplyr ggplot2]; }; @@ -15267,6 +15332,7 @@ in with self; { rma_exact = derive2 { name="rma.exact"; version="0.1.0"; sha256="1igs92la79akyqj84ah23lpcay7i33k7zgzcwm7sii782fhirivx"; depends=[abind metafor]; }; rmaf = derive2 { name="rmaf"; version="3.0.1"; sha256="0w247mamwgibr5576p5c2lzaiz2lv2c25n7gw9q99s7rc4bps7j7"; depends=[]; }; rmake = derive2 { name="rmake"; version="1.1.0"; sha256="00qlki2vps505nxzmfykf1iyq4b0y20nb75hbfcj63ap46z7zk3c"; depends=[assertthat pryr rmarkdown visNetwork]; }; + rmangal = derive2 { name="rmangal"; version="2.1.0"; sha256="105jnf7583zmmn7w8cziiypga7h5imyp73wnn2jzdblg71lzwqn7"; depends=[httr igraph jsonlite memoise purrr]; }; rmapshaper = derive2 { name="rmapshaper"; version="0.4.5"; sha256="0mfmip9ncg60nciv6mf12z15wfyffd2shhclx78l0801295siybc"; depends=[geojsonio geojsonlint jsonlite readr sf sp V8]; }; rmapzen = derive2 { name="rmapzen"; version="0.4.3"; sha256="1n44l4sj6s78nr3hqidabkyg9pradk9c1mqfvzhanj2nrfdrwnqj"; depends=[assertthat digest dplyr geojsonio httr jsonlite maps maptools purrr rgdal sf sp tibble tidyr]; }; rmarchingcubes = derive2 { name="rmarchingcubes"; version="0.1.3"; sha256="0cdmy728irmbd40xsc2k4r2g8am7s72ks7cw465fa92ml2xa6iq8"; depends=[Rcpp RcppArmadillo]; }; @@ -15310,13 +15376,13 @@ in with self; { rnbp = derive2 { name="rnbp"; version="0.2.1"; sha256="0vphfxb262jryvvs48l21q3vxqicj51az0li38axg1mslshw0y4g"; depends=[curl httr jsonlite]; }; rncl = derive2 { name="rncl"; version="0.8.4"; sha256="0ss9jqrvv7bhvl5j74cjrp8r866d9dlavrbbfscwz3mhkgfx06bb"; depends=[progress Rcpp]; }; rneos = derive2 { name="rneos"; version="0.4-0"; sha256="07b3vb0h36ilwb8iylgppl8wpi84f583frmscpj236s1aihqwrmx"; depends=[RCurl XML]; }; - rnetcarto = derive2 { name="rnetcarto"; version="0.2.4"; sha256="0fk5rym6zp049bl1f7bkl2231mjh3pgnxn0nhvmzpsah08rh4rr6"; depends=[]; }; rngSetSeed = derive2 { name="rngSetSeed"; version="0.3-2"; sha256="00mqjjkhbnvxqkf1kz16gipsf98q62vmhx9v8140qs7c4ljbhc3a"; depends=[]; }; rngWELL = derive2 { name="rngWELL"; version="0.10-7"; sha256="0f1dxxaimfb0fww8ym9ciqf6q760ai46wxldl37m5mfpd57ca00c"; depends=[]; }; rngtools = derive2 { name="rngtools"; version="1.5.2"; sha256="0kd7x214cqw7hzpmk1iqy1bn7j6x0ady0yz2hsdbclbq9k57d33z"; depends=[digest]; }; rngwell19937 = derive2 { name="rngwell19937"; version="0.6-0"; sha256="0m6icqf7nckdxxvmqvwfkrpjs10hc7l8xisc65q8iqpnpwl5p2f6"; depends=[]; }; + rnmamod = derive2 { name="rnmamod"; version="0.1.0"; sha256="1ayl5cry7lxdf1zscdrxdf50y78scr4qdkghdki6srkx2r645wx0"; depends=[coda dplyr fdrtool gemtc ggfittext ggplot2 ggpubr ggrepel knitr MASS mcmcplots netmeta pcnetmeta R2jags reshape2 scales writexl]; }; rnn = derive2 { name="rnn"; version="1.4.0"; sha256="0k960jylbvg8r453430d8dpdzydkk3yr5np8rxkay79533ikrcgy"; depends=[shiny sigmoid]; }; - rnoaa = derive2 { name="rnoaa"; version="1.3.4"; sha256="1yrasq4wgi5q783zyv00xxqzv0r8mrzdv9q7mkabawdmpxji3f1y"; depends=[crul data_table dplyr geonames ggplot2 gridExtra hoardr isdparser jsonlite lubridate rappdirs scales tibble tidyr tidyselect XML xml2]; }; + rnoaa = derive2 { name="rnoaa"; version="1.3.7"; sha256="06sq2wgv735s5bji1i8x8q5dsixppiddb1hkabhvvr5mq8valjcc"; depends=[crul data_table dplyr geonames ggplot2 gridExtra hoardr isdparser jsonlite lubridate rappdirs scales tibble tidyr tidyselect XML xml2]; }; rnpn = derive2 { name="rnpn"; version="1.2.4"; sha256="0lq9c5in0pf3km6zvfnn71wbh34lk3hgav0b9waspmzsgki8fvl1"; depends=[curl data_table httr jsonlite magrittr plyr raster rgdal sp tibble XML]; }; rnr = derive2 { name="rnr"; version="0.2.1"; sha256="1z9bab3qmq8d79bcvjzldbxlah2w8mqp2ifd0cn1348dafwa0dhi"; depends=[assertthat purrr]; }; rnrfa = derive2 { name="rnrfa"; version="2.0.4"; sha256="0sy64bgb94ksgcy37kmj61iphf66i0jpx0qlrcsr24zr92syc1n2"; depends=[curl ggmap ggplot2 httr jsonlite lubridate rgdal sp tibble zoo]; }; @@ -15346,11 +15412,12 @@ in with self; { robslopes = derive2 { name="robslopes"; version="1.0.2"; sha256="04767ggjjsgm31ysk5xw8jvdnjdbk4fmrrsi83ksz746kl0xafzp"; depends=[Rcpp RcppArmadillo]; }; robsurvey = derive2 { name="robsurvey"; version="0.1.1"; sha256="0rf2sd7maz565hlgpyhvkswqyck01hif4mg5isbnnky9n3nc98pi"; depends=[survey]; }; robumeta = derive2 { name="robumeta"; version="2.0"; sha256="1ynlfxlzh442jd1cf02j0f948m16d536a30gb4bf7208baqri1vg"; depends=[]; }; - robust = derive2 { name="robust"; version="0.6-0"; sha256="1nq21ka5qyyyx84vcpycwk553z9a0s94hlgqaqzghmxnygdhg7sf"; depends=[fit_models lattice MASS robustbase rrcov]; }; + robust = derive2 { name="robust"; version="0.6-1"; sha256="0z8i0qqlsa6vpl457qir3dlsynhjfn2g22436d776vxwyqjx4vs9"; depends=[fit_models lattice MASS robustbase rrcov]; }; + robust2sls = derive2 { name="robust2sls"; version="0.1.0"; sha256="149wdrjjpzwm2zi1a2wrv6qcdxya77dz1i7d2vqz4vx4qzw55hf6"; depends=[AER doRNG foreach pracma]; }; robustBLME = derive2 { name="robustBLME"; version="0.1.3"; sha256="18wx116l1riy4wn4083kxl637mkyyi9wbwnmvhkgqw3vb36s4vxd"; depends=[doParallel foreach iterators lme4 mvtnorm numDeriv Rcpp RcppArmadillo]; }; robustDA = derive2 { name="robustDA"; version="1.2"; sha256="0kxdqvv17dgnlqp0hkazwfqsg3h4g9gw1w57blwpay67xp4d1jyx"; depends=[MASS mclust Rsolnp]; }; robustETM = derive2 { name="robustETM"; version="1.0"; sha256="1dlj79v08bls500lb81rya6vwx58h97rpq1sy9zwd3mfl9b6awp9"; depends=[]; }; - robustHD = derive2 { name="robustHD"; version="0.7.1"; sha256="0s0kxdqi390si653wsnd19lnnqna7nxi5hi6v4xfmmnpdwvp4l3x"; depends=[ggplot2 MASS perry Rcpp RcppArmadillo robustbase]; }; + robustHD = derive2 { name="robustHD"; version="0.7.2"; sha256="19nq86wy08gpb07snwadymxwfdg4qkp2a8bhnpymwfqd0lzjyq43"; depends=[ggplot2 MASS perry Rcpp RcppArmadillo robustbase]; }; robustX = derive2 { name="robustX"; version="1.2-5"; sha256="1l8ap69aljr3d28512d15hf53bxzfdk6q4ab59z63nr053rfxa4f"; depends=[robustbase]; }; robustarima = derive2 { name="robustarima"; version="0.2.6"; sha256="137x9w3fq523bw2wix7bwc255mq7kvqa047chcnb2prihn9d6as7"; depends=[splusTimeDate splusTimeSeries]; }; robustbase = derive2 { name="robustbase"; version="0.93-9"; sha256="0i9wf4aq8zpn2np6z2rjja21ks9n740dgkiv0qfwdzk3ah3vapyp"; depends=[DEoptimR]; }; @@ -15371,6 +15438,7 @@ in with self; { roccv = derive2 { name="roccv"; version="1.2"; sha256="18kq2gzcbz97dw168xppql8k3slpkfl8yv1d8ac48damlhvipif1"; depends=[glmnet pROC]; }; rock = derive2 { name="rock"; version="0.5.1"; sha256="1abyr9i2p1xjll6cry8hmbgskwr10ki4r0zw29qg8iz2rpxl0zpp"; depends=[data_tree DiagrammeR DiagrammeRsvg dplyr ggplot2 glue htmltools markdown purrr yaml yum]; }; rockchalk = derive2 { name="rockchalk"; version="1.8.144"; sha256="07dp1n155b9gfvk8l30h6bhjbhbylsjxfzns08mryn4mxj3nqpnb"; depends=[carData kutils lme4 MASS]; }; + rocker = derive2 { name="rocker"; version="0.1.2"; sha256="17z1vrypy25g18jmpiydxhahzlb0cdhzl84b8c6nqhyc3ldwxiyv"; depends=[DBI R6 safer]; }; rockr = derive2 { name="rockr"; version="1.0.0"; sha256="190xaxcbb7miqw5mxyfqqlb2vzacifc8a7a3cqfdlpxra4d4jc25"; depends=[httr jsonlite mime progress]; }; roclang = derive2 { name="roclang"; version="0.1.2"; sha256="139m7biiidcbc3a9nnp5qpdysszrzldhf6dp64rfshp3rjpfssiq"; depends=[dplyr magrittr purrr rex rlang roxygen2 stringr tibble tidyr]; }; rocnp = derive2 { name="rocnp"; version="0.1.0"; sha256="1xqlmihhgjn6g3kabgmdx1qn18sxqd43sq3nb39i8pbwvaxhjqjr"; depends=[dplyr glue magrittr purrr rlang stringr tibble]; }; @@ -15411,7 +15479,7 @@ in with self; { rospca = derive2 { name="rospca"; version="1.0.4"; sha256="1pxm34xsc2610n0i6dwcm4rhn016yqb03f8vrm93r7285c04n4q7"; depends=[elasticnet mrfDepth mvtnorm pcaPP pracma robustbase rrcov rrcovHD]; }; rotasym = derive2 { name="rotasym"; version="1.1.3"; sha256="1sknhvwmy1r0sa76lp8qv5h7lx05mvw04ip7cvxcamwg6l2bifis"; depends=[Rcpp RcppArmadillo]; }; rotationForest = derive2 { name="rotationForest"; version="0.1.3"; sha256="1z2wk3mcs5hrahsxralidbc0dd8gxdbwjpr2f71g4g3isfx1ic8d"; depends=[rpart]; }; - rotations = derive2 { name="rotations"; version="1.6.2"; sha256="1r42lgy4f6mblz29hvy7s166yk2s4k8x03snh7yy97g7falmh718"; depends=[ggplot2 gridExtra Rcpp RcppArmadillo sphereplot]; }; + rotations = derive2 { name="rotations"; version="1.6.3"; sha256="075nr8wajvb40w9zbi9gaqhhjylj3s81p0mdncjw2zw8hyv4f476"; depends=[ggplot2 gridExtra Rcpp RcppArmadillo sphereplot]; }; rotl = derive2 { name="rotl"; version="3.0.11"; sha256="0b0wr795qicb8k1m4ng0kx9alc88davhdr3kar4ynjblaavz16rk"; depends=[ape assertthat httr jsonlite rentrez rncl]; }; rotor = derive2 { name="rotor"; version="0.3.5"; sha256="0rpa24yh72r6sv5xxyia9p8f8c51cfblprb4srrjk2y0fgz5h33i"; depends=[dint R6]; }; round = derive2 { name="round"; version="0.20-0"; sha256="1c403i57fwfh3pz6ksg5ws2fydq8zf2fk4x6r9d0xqn0fs7px7j4"; depends=[]; }; @@ -15458,6 +15526,7 @@ in with self; { rpsychi = derive2 { name="rpsychi"; version="0.8"; sha256="1h40kbqvvwwjkz5hrclj6j22zhav3yyfbbhqahs1whwjkksnam4w"; depends=[gtools]; }; rptR = derive2 { name="rptR"; version="0.9.22"; sha256="0vvjc6qiq71d5wckl77z606q1fp43mgrfzp1bxcab96n5whb2r9k"; depends=[lme4 pbapply]; }; rpubs = derive2 { name="rpubs"; version="0.2.2"; sha256="18cnzhcvm7gx4k01ysqay53smrf8xqlbaszq41mny5c7qqh1fvpz"; depends=[rvest xml2]; }; + rpymat = derive2 { name="rpymat"; version="0.1.1"; sha256="067czg4wkpkgrrw78j9r62i1b82bzfsxgx4mdgab2wq2szdij6rn"; depends=[fastmap rappdirs reticulate]; }; rqPen = derive2 { name="rqPen"; version="2.2.2"; sha256="077kdvfdyp5h8630k8jigbz8mfyby8vkjiqxpqv0wfi6cqcjlaf2"; depends=[quantreg regpro]; }; rqdatatable = derive2 { name="rqdatatable"; version="1.3.0"; sha256="0q10fi6xvw7495yrv6y8zzda31xyl6nbinq0dn2brfjp66w864k7"; depends=[data_table rquery wrapr]; }; rquery = derive2 { name="rquery"; version="1.4.7"; sha256="0m57y5wfg1mvla4d6a8mnxnhz973k1nvz899rbxnxaqfa7azxp62"; depends=[wrapr]; }; @@ -15474,7 +15543,7 @@ in with self; { rrecsys = derive2 { name="rrecsys"; version="0.9.7.3.1"; sha256="1qnjriv1xq4gjjhzz8jxrbk88mw5xddl2l2i4bmfhnxhi51d2rk3"; depends=[ggplot2 knitr MASS Rcpp registry]; }; rredis = derive2 { name="rredis"; version="1.7.0"; sha256="0wzamwpmx20did8xj8x9dllri2ps83viyqjic18ari7i4h1bpixv"; depends=[]; }; rredlist = derive2 { name="rredlist"; version="0.7.0"; sha256="1w77cnfrybmqnadsmfkpjv5m49kkr7yc6kcqq165lmj3bijnprnj"; depends=[crul jsonlite]; }; - rrefine = derive2 { name="rrefine"; version="1.1.2"; sha256="19k9njv3x6bg2yrh3zk842nmrjaawma4xyprxkqvb6qi38q890lx"; depends=[httr readr]; }; + rrefine = derive2 { name="rrefine"; version="2.0.0"; sha256="1plv6ykhcpp8d111gkkh8zx9zjrkxqpvg6vcbcy2234yd6wd0wky"; depends=[httr jsonlite readr]; }; rreg = derive2 { name="rreg"; version="0.2.1"; sha256="05c2yj58zn43zkmqp4iyblsixsq76hsjkchffl5rkqynvgxi0qzi"; depends=[directlabels ggplot2]; }; rrepast = derive2 { name="rrepast"; version="0.8.0"; sha256="1x8xda9cndxri2hhd2ihxmjjy0x74r0dh3953dfh7gvj4slaf0rl"; depends=[digest doSNOW foreach ggplot2 gridExtra lhs rJava sensitivity xlsx]; }; rres = derive2 { name="rres"; version="1.1"; sha256="138m26ya119805b1akwski0hf1ypiqsqjlkrm9p0l2x22zrv1n60"; depends=[kernlab Rcpp]; }; @@ -15493,7 +15562,7 @@ in with self; { rscala = derive2 { name="rscala"; version="3.2.19"; sha256="1wq0wrdbh0gi0bx4m9526qlbjm7nxxqgc17ikdx5mrhcy2f61hjk"; depends=[]; }; rscc = derive2 { name="rscc"; version="0.2.0"; sha256="0k1p0w90p2qyjhwfgh35ya02hxqm12h3fkyc6wfxbsxiklkw61vz"; depends=[crayon formatR highlight igraph tm]; }; rscimark = derive2 { name="rscimark"; version="1.0"; sha256="1jsjz4d5bnxb90qqzz42m4nyvm8d8w8bs0m1r5g2n78zmckqb8vy"; depends=[checkmate]; }; - rsconnect = derive2 { name="rsconnect"; version="0.8.24"; sha256="19p4w9dmhsl1vdvwv3hfmd5qzf4296g0x878idfajvrx0wgfysyg"; depends=[curl digest jsonlite openssl packrat rstudioapi yaml]; }; + rsconnect = derive2 { name="rsconnect"; version="0.8.25"; sha256="1kyr4v7vds2yw3xmkk2yr56ylz1h95944brylwvwmwj5yxvm419w"; depends=[curl digest jsonlite openssl packrat rstudioapi yaml]; }; rscontract = derive2 { name="rscontract"; version="0.1.2"; sha256="0gn0xcvg9nj6m97g4si6bgmgaj6hxpicz8yig7n84jnczh6w510x"; depends=[]; }; rscopus = derive2 { name="rscopus"; version="0.6.6"; sha256="0kl6rv0j2396b8izvy0lp1f588il6w3yhq6d4swv8x8z14rsgcpw"; depends=[dplyr glue httr jsonlite plyr tidyr]; }; rscorecard = derive2 { name="rscorecard"; version="0.20.0"; sha256="0psh53r8hvyvg7n20p7dl2qnd5gznx1lfkxqrc05kfksl4zvrrm5"; depends=[dplyr httr jsonlite lazyeval magrittr purrr tidyr tidyselect]; }; @@ -15506,9 +15575,9 @@ in with self; { rsimsum = derive2 { name="rsimsum"; version="0.11.0"; sha256="0zmwnhvg55dd7234ffxs08gjhjkww214xxqad0byi7aqnkn7x56a"; depends=[checkmate generics ggplot2 ggridges knitr lifecycle rlang scales]; }; rsinaica = derive2 { name="rsinaica"; version="0.6.1"; sha256="1ba19b2fgnnl50qp6hgjppgxbadghq68qap9f0m51k2k3ijgfiwn"; depends=[dplyr httr jsonlite lubridate stringr]; }; rskey = derive2 { name="rskey"; version="0.4.4"; sha256="1la3apypp1kk425r753vqwm3nk9zmynp9gix6db0ckkssw0fjxpw"; depends=[berryFunctions rstudioapi]; }; - rsleep = derive2 { name="rsleep"; version="1.0.3"; sha256="11r32xxqdi0cvx67x8yrb4c36c73mgdy18sayg18cnsqb9qhxvyz"; depends=[edfReader ggplot2 jsonlite phonTools psd signal]; }; + rsleep = derive2 { name="rsleep"; version="1.0.4"; sha256="0rb9dpy1ks04mqb0aismkj0zg9sigyrbgb6j0rl9cw2npp0jz7vg"; depends=[edfReader ggplot2 jsonlite phonTools psd signal]; }; rslp = derive2 { name="rslp"; version="0.2.0"; sha256="186k1gngirqhvhii4ysq77wjf5gf75c7gya73minb0pfg9fn16l7"; depends=[magrittr plyr stringi stringr tokenizers]; }; - rslurm = derive2 { name="rslurm"; version="0.6.0"; sha256="0fn2na8prsaxa03x5wi3105gpsxc35qvgmik7wy3nylvx4wdfv9g"; depends=[whisker]; }; + rslurm = derive2 { name="rslurm"; version="0.6.1"; sha256="19451icfh7snjbbmpzpr1hrdf52q8ijv0ag1di3y55r2la3jxxcf"; depends=[whisker]; }; rsm = derive2 { name="rsm"; version="2.10.3"; sha256="1dcjsn3wa7rqdpixh37vjgk3z5siwlyn70qffp49m3awn258hwpg"; depends=[estimability]; }; rsmatrix = derive2 { name="rsmatrix"; version="0.2.0"; sha256="0d3y0ihz32jhqmzlgh7lqw4c122dbai2ic56qkalg63ckfswpzrw"; depends=[Matrix]; }; rsnps = derive2 { name="rsnps"; version="0.4.0"; sha256="0ppv64yj1nh13q4lks6djrjc37b32qj5pyddy1lfcy066ah63km6"; depends=[crul data_table httr jsonlite plyr RJSONIO stringr]; }; @@ -15535,7 +15604,7 @@ in with self; { rstoat = derive2 { name="rstoat"; version="1.0.2"; sha256="0npwv33a7axwhnfyz39nh0x5kk4q3chscings3msx532lzvif0cl"; depends=[curl httr jsonlite keyring]; }; rstpm2 = derive2 { name="rstpm2"; version="1.5.2"; sha256="0c6l3z250b2kn6mh2xyb0bd2y5nsbj11n9xfi51dac9s8xq3v7m4"; depends=[bbmle BH deSolve fastGHQuad mgcv Rcpp RcppArmadillo survival]; }; rstream = derive2 { name="rstream"; version="1.3.6"; sha256="1mr869hff5wdpw6a7x71366y8dxf9vljbb11fssfkhcf7hm2ipnj"; depends=[]; }; - rstudio_prefs = derive2 { name="rstudio.prefs"; version="0.1.7"; sha256="1b93hakw5wn8fp99zp22rm8yd27m1884ig1xx5bbcifgxanvic57"; depends=[cli dplyr fs jsonlite purrr rappdirs rlang rstudioapi rvest tibble]; }; + rstudio_prefs = derive2 { name="rstudio.prefs"; version="0.1.8"; sha256="1mb87qf53h46n6fvyskr17v36lfqq59vi21lcf7j6mg2sz5nnyq5"; depends=[cli dplyr fs jsonlite purrr rappdirs rlang rstudioapi rvest tibble]; }; rstudioapi = derive2 { name="rstudioapi"; version="0.13"; sha256="12vdfzzjc6mv4h105l8cp108j3hjk0mqmg23m6mqr3jarfymphxa"; depends=[]; }; rsubgroup = derive2 { name="rsubgroup"; version="1.1"; sha256="16glxyv6aja7j0vfjccfi8w84wzm2ajfl62l0g5vpl73j7cs6gnk"; depends=[foreign rJava]; }; rsurface = derive2 { name="rsurface"; version="1.1.0"; sha256="1pymbgvr72nqd66wap5wrcizzx2k9bfr6vkxv6dkvjmi8q7jl2gv"; depends=[plotly rsm]; }; @@ -15557,6 +15626,7 @@ in with self; { rtern = derive2 { name="rtern"; version="0.1.1"; sha256="00yhsns89jynh2gpgwwklkf0pbwcriha76ff3sh7pb5n6hl5nr1c"; depends=[lifecycle]; }; rtext = derive2 { name="rtext"; version="0.1.22"; sha256="0wsy0iqzbfin92pw0bqj4bxm2p4f2y4frr137l6c3yvd0jrax3q4"; depends=[digest hellno magrittr R6 Rcpp RSQLite stringb]; }; rtf = derive2 { name="rtf"; version="0.4-14.1"; sha256="032ff0yavqmd2d9svgwkmvxwh0cxjbac6pj48v4cshi898f02rhh"; depends=[R_methodsS3 R_oo]; }; + rtgstat = derive2 { name="rtgstat"; version="0.1.1"; sha256="0nbw9swwd7a5cfdjkixlgv0irc9l9qg1jlrkixkldb2dk35330nx"; depends=[cli dplyr httr2 purrr retry snakecase stringr tidyr]; }; rticles = derive2 { name="rticles"; version="0.21"; sha256="0xk0xz97k8r8srmniihn3y4dkxddxf97yjbsljcxlgcq8f0zcc2s"; depends=[knitr rmarkdown tinytex xfun yaml]; }; rticulate = derive2 { name="rticulate"; version="1.7.2"; sha256="0xgl36m63z9kzqj0srjp3lb65hfizszlgw0kwjwc9li607q4fy6m"; depends=[dplyr ggplot2 glue magrittr mgcv purrr readr rlang stringr tibble tidymv tidyr tidyselect tidyverse]; }; rtide = derive2 { name="rtide"; version="0.0.9"; sha256="0gr0j52jy7y1w1s0s88rjv9l85yvavypagmi0qw2ix9ca2xadlzl"; depends=[abind chk dttr2 tibble]; }; @@ -15672,7 +15742,6 @@ in with self; { saemix = derive2 { name="saemix"; version="2.4"; sha256="0w79n28xvkf2iw0vm9bw5dhxlp54bzm1lwl7q2hw356c2gmbpwjh"; depends=[]; }; saery = derive2 { name="saery"; version="1.0"; sha256="09x1v627llqbpiwkh1wr0z7gsndfdrjzag2hprhq1adbzh05k47z"; depends=[]; }; safeBinaryRegression = derive2 { name="safeBinaryRegression"; version="0.1-3"; sha256="1g68r6pp5l41rbgyfqgcha1gpsisnl0ybdmdqr4ylr43f61dpgvd"; depends=[lpSolveAPI]; }; - safedata = derive2 { name="safedata"; version="1.0.9"; sha256="0xcpgh4898rqdnnxx21vyxc8aqlwg26aywr591sllasrv1jzsmrc"; depends=[chron curl igraph jsonlite readxl sf]; }; safejoin = derive2 { name="safejoin"; version="0.1.0"; sha256="0qvra505g7cay3nhq6yqrddb7sw3kx50y8jhgvxi47rxdc3alzba"; depends=[dplyr glue]; }; safer = derive2 { name="safer"; version="0.2.1"; sha256="1lmhaj9y0hi4ybxfkllxl99vsagcg73sy4kkcmlvn3bs69jky1r9"; depends=[assertthat base64enc sodium]; }; safetyCharts = derive2 { name="safetyCharts"; version="0.2.0"; sha256="1gdrl7wmxlvnk8wghrjv3cnvdsmx79f1s0j51yb4q94dxprssajh"; depends=[dplyr DT forcats ggplot2 huxtable kableExtra knitr pharmaRTF RColorBrewer rlang shiny stringr Tendril Tplyr]; }; @@ -15706,6 +15775,7 @@ in with self; { sams = derive2 { name="sams"; version="0.4.2"; sha256="0k67vdjwnp7ljll87vjqb80axbcfgm05rgw5vadzn67dgghkqd0j"; depends=[]; }; samurais = derive2 { name="samurais"; version="0.1.0"; sha256="0s00hd3ax4r662n8iqmd9i56sgyjxbgc59la7qvh3jwcnzcvmgz9"; depends=[MASS Rcpp RcppArmadillo]; }; sand = derive2 { name="sand"; version="2.0.0"; sha256="0a8skj1wi1n9zlm7jb5cix1i4ssdzfpj4ym2854ala9jy6qj7g7n"; depends=[igraph igraphdata]; }; + sandbox = derive2 { name="sandbox"; version="0.2.0"; sha256="1xwz8bddl9zf75d5xxvyvnljm6x45dwsf7lsks0fw7h5h97cv3xq"; depends=[RLumModel]; }; sandwich = derive2 { name="sandwich"; version="3.0-1"; sha256="12aa5083k3sfrfq1jy3l94wffss9h0rga8j71jy3n8pkhiq4nn7n"; depends=[zoo]; }; sanic = derive2 { name="sanic"; version="0.0.1"; sha256="05fd7jpi7cf9klfh6dqf8wklrjh5q1b3xqddxhdihcsqvcqhg48l"; depends=[Matrix Rcpp RcppEigen]; }; sanitizers = derive2 { name="sanitizers"; version="0.1.0"; sha256="1c1831fnv1nzpq8nw9krgf9fm8v54w0gvcn4443b6jghnnbhn2n6"; depends=[]; }; @@ -15719,7 +15789,7 @@ in with self; { saotd = derive2 { name="saotd"; version="0.3.0"; sha256="11ql731w3rc4spmd2ii52r49sxymxkf7wj2ngdvb8pcs4idar059"; depends=[dplyr ggplot2 ggraph igraph ldatuning lubridate magrittr reshape2 rtweet scales stringr tidyr tidytext topicmodels widyr]; }; sapa = derive2 { name="sapa"; version="2.0-3"; sha256="0kj681rd4c2lvqr926lb6f4qwp281x5274dg6vbk8pf5y7s0qlpc"; depends=[ifultools splus2R]; }; sapevom = derive2 { name="sapevom"; version="0.2.0"; sha256="0vq4rx85pdjc0wjxjf7wj8j5qs3cb20hwhlc2ypbgrlw7zkcp1z4"; depends=[]; }; - sapfluxnetr = derive2 { name="sapfluxnetr"; version="0.1.2"; sha256="073sdsq9a4dijmya3pcckb45wr1axraymwragwpmvbsb4rfw9zi7"; depends=[assertthat dplyr furrr ggplot2 glue lubridate magrittr purrr rlang stringr tibble tidyr]; }; + sapfluxnetr = derive2 { name="sapfluxnetr"; version="0.1.3"; sha256="06w3wm8m55ak1zxdyqq01ymgvyw71hk2m1vv378dppjxib7kvh3z"; depends=[assertthat dplyr furrr ggplot2 glue lubridate magrittr purrr rlang stringr tibble tidyr]; }; saqgetr = derive2 { name="saqgetr"; version="0.2.21"; sha256="0s7mmc8gqx89697wkv369x6sp3d1wha4q2zkkwikh835i3alx4zd"; depends=[dplyr httr lubridate magrittr purrr readr stringr tidyr]; }; sarima = derive2 { name="sarima"; version="0.8.5"; sha256="1850h8rly6kx8lsnpyh16nw69jhmgh5ggp9c8knqz2bm64s7xlwa"; depends=[dplyr FitAR FitARMA FKF Formula KFAS lagged ltsa numDeriv PolynomF Rcpp RcppArmadillo Rdpack]; }; sarp_snowprofile = derive2 { name="sarp.snowprofile"; version="1.0.0"; sha256="02g7d5kilfkhqxm02jkhkraqbamxaj1qzzi150k6m55d5bfy4wih"; depends=[data_table xml2]; }; @@ -15727,11 +15797,11 @@ in with self; { sars = derive2 { name="sars"; version="1.3.5"; sha256="07jaagf3q8x4iwjh1avy5vzv9y62ipnjd43acbw0hizh983qlq3r"; depends=[AICcmodavg cli crayon doParallel foreach nortest numDeriv]; }; sarsop = derive2 { name="sarsop"; version="0.6.9"; sha256="1rjpgicgy9vfi9q2vldrbbakybmazal5gh79p2kysnzhcr76v3z5"; depends=[BH digest Matrix processx xml2]; }; sas7bdat = derive2 { name="sas7bdat"; version="0.5"; sha256="0qxlapb6wdhzpwlmzlhscy3av7va3h6gkzsppn4sx5q960310an3"; depends=[]; }; - sasLM = derive2 { name="sasLM"; version="0.6.3"; sha256="0p4k9mkdwm3zb647gsxra6vfpjnch57yckihbgrlaw3295g9s637"; depends=[mvtnorm]; }; + sasLM = derive2 { name="sasLM"; version="0.6.4"; sha256="0rqw8phpmv3ij9rz9jl2n0j1mfklh27acijnqqlw2f65qrilqapd"; depends=[mvtnorm]; }; sasMap = derive2 { name="sasMap"; version="1.0.0"; sha256="11vhhxhakqm1gsb3p4s4966sapmrqfyw79zfppbx5lnqi3xr0ngn"; depends=[readr stringi stringr]; }; sasfunclust = derive2 { name="sasfunclust"; version="1.0.0"; sha256="1ba7g3rxyq5h806na6bsdvh6mw6hydgcf3740qkfd4d5fx7m0mq4"; depends=[fda MASS Matrix matrixcalc mclust Rcpp RcppArmadillo]; }; sass = derive2 { name="sass"; version="0.4.0"; sha256="0axw358bbk3vxsqg3wq0bz3xigasa6af8fxvi2ga8hli4cawl1kx"; depends=[fs htmltools R6 rappdirs rlang]; }; - sassy = derive2 { name="sassy"; version="1.0.5"; sha256="0f723qnj37vz2nzxkcjq735zs6bj1ks65ivzwr38qy3h0372gmq3"; depends=[fmtr libr logr reporter]; }; + sassy = derive2 { name="sassy"; version="1.0.6"; sha256="1nad1czbd508a0v4mgh5m0na39qv2jzrlzjb008w8q5c08hyp0sd"; depends=[fmtr libr logr reporter]; }; sate = derive2 { name="sate"; version="1.1.0"; sha256="0d1b0gp5abh5g7a25ff40xdnncrl2afjnlcc56dbhqkk43gjah17"; depends=[MASS]; }; satellite = derive2 { name="satellite"; version="1.0.4"; sha256="0z6wh0nmzxgizd8rzafkq8hkxx9s8lkaqins68697284lxvrbrwr"; depends=[plyr raster Rcpp terra]; }; satin = derive2 { name="satin"; version="1.0"; sha256="0ing5vhw8akrpy703fcwn5p0gadfabqb3abc9ircpgb6y2k5axzk"; depends=[geosphere lubridate maps maptools ncdf4 PBSmapping sp splancs]; }; @@ -15800,6 +15870,7 @@ in with self; { scholar = derive2 { name="scholar"; version="0.2.2"; sha256="1irigcws62sz1ai3ci80cdgwgisnra8kylqb2hxx3h62ddlpzhg7"; depends=[dplyr ggplot2 ggraph httr R_cache rvest stringr tidygraph xml2]; }; schoolmath = derive2 { name="schoolmath"; version="0.4"; sha256="06gcmm294d0bs5whvknrq48sk7li961lzy4bcncjg052zbbpn67x"; depends=[]; }; schrute = derive2 { name="schrute"; version="0.2.2"; sha256="1j1bb7inhxq355kvqmp45zgxz41d3rpbh2rxk9wkahsbiy0cdybn"; depends=[dplyr ggplot2 magrittr stringi stringr tibble tidyr tidytext]; }; + schtools = derive2 { name="schtools"; version="0.1.0"; sha256="02qlncaddbyvm38ja480qd92gqbs06wxb49902g81mc918gmxqf6"; depends=[dplyr formatR rlang tidyr]; }; schumaker = derive2 { name="schumaker"; version="1.2.1"; sha256="15i39lzkd1qggd35sp39vy922y3y1n9drjkidz7asniv1miali6j"; depends=[]; }; scico = derive2 { name="scico"; version="1.2.0"; sha256="1l7vin8zjnv3zhgv81v6qrx6nysd2kx10na1pfn6mmxvr1bsj9jp"; depends=[]; }; scientoText = derive2 { name="scientoText"; version="0.1"; sha256="0f18hg9s50lbbgl0fqjv45yhynpnsxj8wwm07g126snzr68gbd21"; depends=[stringr tm]; }; @@ -15810,7 +15881,7 @@ in with self; { scoper = derive2 { name="scoper"; version="1.2.0"; sha256="08zpia618dkvgksbpvhix5dgvgzbc1iakf97bh4akpxqa7i3bcv5"; depends=[alakazam data_table doParallel dplyr foreach ggplot2 Rcpp rlang scales shazam stringi tidyr]; }; scopr = derive2 { name="scopr"; version="0.3.3"; sha256="1j45l5zcrpc4dnb6ik1v0jlqizpkijl0p656s869jhhvv55r6v2i"; depends=[behavr data_table memoise readr RSQLite stringr]; }; score = derive2 { name="score"; version="1.0.2"; sha256="1p289k1vmc7qg70rv15x05dyb92r7s6315whr1ibi40sqln62a5s"; depends=[msm]; }; - scorecard = derive2 { name="scorecard"; version="0.3.5"; sha256="0zsmjdcsprpnggznwiy4m21r7vryx17chz2s3q2ny74gdjpyc0z2"; depends=[data_table doParallel foreach ggplot2 gridExtra openxlsx stringi]; }; + scorecard = derive2 { name="scorecard"; version="0.3.6"; sha256="1ajsgqfpw3wbbdn2rfwxi585rn0kih0c0hsknlrkhid0jcxvxln3"; depends=[data_table doParallel foreach ggplot2 gridExtra openxlsx stringi]; }; scorecardModelUtils = derive2 { name="scorecardModelUtils"; version="0.0.1.0"; sha256="09znaxrv14m58hsk5pac458xbpcsidc6ygcsw4q9j0p4yd80qbvl"; depends=[car e1071 gbm ggplot2 partykit randomForest reshape2 sqldf stringr]; }; scorepeak = derive2 { name="scorepeak"; version="0.1.2"; sha256="1g9n7kjqb9qk5b7hw8ysrc069w9dzc4z29ay6z1kbm0v4kkzp7bi"; depends=[checkmate Rcpp]; }; scoring = derive2 { name="scoring"; version="0.6"; sha256="114jlpbnm15fdan5lr40adxdzwajy3yhdw6dm4kvkvky6qhcx7q5"; depends=[]; }; @@ -15837,7 +15908,7 @@ in with self; { scutr = derive2 { name="scutr"; version="0.1.2"; sha256="0wq20zvn839iws9qzaknfisr9r2pipdcvxfjvqmk1bw9irfgj3gm"; depends=[mclust smotefamily]; }; sdPrior = derive2 { name="sdPrior"; version="1.0-0"; sha256="0g4crlasnvxz752n3az5jc681jvvj2g87c3a8s2h1i2vh64p5h37"; depends=[doParallel GB2 MASS mgcv mvtnorm pscl]; }; sdStaf = derive2 { name="sdStaf"; version="1.0.2"; sha256="0r7lqj30r3f0b18kpahi63zsdizcw2zjf1vvvs04s4cg1djjbcp3"; depends=[dismo dplyr ggplot2 raster rasterVis rgdal rgeos sp tidyr]; }; - sda = derive2 { name="sda"; version="1.3.7"; sha256="1v0kp6pnjhazr8brz1k9lypchz8k8gdaby8sqpqzjsj8klghlcjp"; depends=[corpcor entropy fdrtool]; }; + sda = derive2 { name="sda"; version="1.3.8"; sha256="14cpl7zj9aamdwyc8c9s7hnf660srvjv66lpnsm837d4r7k19icv"; depends=[corpcor entropy fdrtool]; }; sdafilter = derive2 { name="sdafilter"; version="1.0.0"; sha256="0y692j25pln46dp6xvaq17fkym0461yqfa6rv5avfw2b240k8jiq"; depends=[glasso glmnet huge POET]; }; sdamr = derive2 { name="sdamr"; version="0.1.0"; sha256="19mgdipp2fwv0c8g5fc02j4vdnc6v4x0204570swv8mkb2r2acqy"; depends=[car dplyr ggplot2]; }; sdat = derive2 { name="sdat"; version="1.1"; sha256="1mxijw2yfblqjvqqb2xrzhfn9c872i1q9ggw24xicvr2fk4lvjw6"; depends=[]; }; @@ -15979,7 +16050,7 @@ in with self; { sequences = derive2 { name="sequences"; version="0.5.9"; sha256="17571m525b6a3k4f0m936wfq401181gx1fpb7x4v0fhaldzdmk3a"; depends=[Rcpp]; }; sequenza = derive2 { name="sequenza"; version="3.0.0"; sha256="13l16lacdcf7fn96yj3xqxap0l19ma9ppkxxx5qk9f5abbvdk303"; depends=[copynumber iotools pbapply readr seqminer squash]; }; sequoia = derive2 { name="sequoia"; version="2.3.5"; sha256="1n0c24g5zl0l63nsaywwjfqsjn0ql2ckd3iqmc381qngijnckc17"; depends=[plyr]; }; - sergeant = derive2 { name="sergeant"; version="0.9.0"; sha256="1iyb0191hkkhhsr4507b1c6j7c7z7lz1v0m2y7flc50yfxicb1fb"; depends=[bit64 DBI dbplyr dplyr htmltools httr jsonlite magrittr purrr readr scales tibble]; }; + sergeant = derive2 { name="sergeant"; version="0.9.1"; sha256="0mgrrlny1qfddznyc34awh8vkbjnyskbyqrxszdhsm2c5wgp2nwh"; depends=[bit64 DBI dbplyr dplyr htmltools httr jsonlite magrittr purrr readr scales stringi tibble]; }; serial = derive2 { name="serial"; version="3.0"; sha256="1y1gj0lcdn5apiv6c6arks6pqhsbvnrfym6n2izjarx2c27ijrjj"; depends=[]; }; seriation = derive2 { name="seriation"; version="1.3.1"; sha256="08c37n3xxc4n4vbkw38k3l3hdlmck8drqpl6z274vkgi2sqv8qyf"; depends=[cluster colorspace gclus MASS qap registry TSP]; }; serieslcb = derive2 { name="serieslcb"; version="0.4.0"; sha256="1ip4k2xzg06hwsni62ai1whs1zzhwlf94507inpfpqz3jmmafrhq"; depends=[gplots shiny]; }; @@ -15988,7 +16059,7 @@ in with self; { serpstatr = derive2 { name="serpstatr"; version="0.1.0"; sha256="1myxw3dh3mkai803dnfdd1zyr2mjzsd2pw00l1fwmmbdplqg9q20"; depends=[httr]; }; serrsBayes = derive2 { name="serrsBayes"; version="0.5-0"; sha256="1w8fs9k4zhy0hwkm30dvi360n28cl2gn9vdqaak64g0nlvb9jy1w"; depends=[Matrix Rcpp RcppEigen truncnorm]; }; servosphereR = derive2 { name="servosphereR"; version="0.1.1"; sha256="0m1fjd3f1s2ss54xmcrm3p0c33hhi2dj0vim790g4y0mw2aicc8l"; depends=[data_table dplyr magrittr purrr rlang]; }; - servr = derive2 { name="servr"; version="0.23"; sha256="1f1fgfgjgjsbn2krkbyw2qwkm0k4lq9p9jakg9zwyqlgpkdd34j4"; depends=[httpuv jsonlite mime xfun]; }; + servr = derive2 { name="servr"; version="0.24"; sha256="11x0857m3xzdbzr4z0vx4fcdk36arfagyf2qgamvprich0qisknr"; depends=[httpuv jsonlite mime xfun]; }; sesem = derive2 { name="sesem"; version="1.0.2"; sha256="0b1xzv38wpkhhlq87xrvlh45b8ksbi8bg4ar5hrf8gxa19r9rmi5"; depends=[gplots lavaan mgcv]; }; session = derive2 { name="session"; version="1.0.3"; sha256="04mcy1ac75fd33bg70c47nxqxrmqh665m9r8b1zsz5jij1sbl8q5"; depends=[]; }; sessioninfo = derive2 { name="sessioninfo"; version="1.2.1"; sha256="0w3vhp652524348a4cfyvvs8z9xpxkcznw8x406nvkwfh0gdyka2"; depends=[cli]; }; @@ -16000,7 +16071,7 @@ in with self; { settings = derive2 { name="settings"; version="0.2.7"; sha256="1i9ij5k8p2v9gxr48vas8hj337mbyx9c4ywv9bbdwkz6kzah46k5"; depends=[]; }; sever = derive2 { name="sever"; version="0.0.7"; sha256="10jckf6q31blsl1yhs5f1mx7b8sm8sqb86iakcvaslf651ijx81m"; depends=[cli htmltools shiny]; }; severity = derive2 { name="severity"; version="2.0"; sha256="1mp19y2pn7nl9m8xfljc515kk5dirv0r2kypazpmd956lcivziqq"; depends=[]; }; - sf = derive2 { name="sf"; version="1.0-3"; sha256="1y1im0wxqx0vqas6ggmi6p1dyp98l895jy3asxky4vq5wpjfrqrf"; depends=[classInt DBI magrittr Rcpp s2 units]; }; + sf = derive2 { name="sf"; version="1.0-4"; sha256="0dxln3ikqmwczz0ri63xwj05v09hkpljw2qvma6n03nzczyg2713"; depends=[classInt DBI magrittr Rcpp s2 units]; }; sfa = derive2 { name="sfa"; version="1.0-1"; sha256="1acqxgydf8j5csdkx0yf169x3yaa31r0ccdrqarh6vj1hacm89ad"; depends=[]; }; sfaR = derive2 { name="sfaR"; version="0.1.0"; sha256="1lgazgj6xfg0syspw6wzmd4xyczydhdgghpaf9kgrqvqfkaqcf8p"; depends=[dplyr emdbook fBasics Formula gsl marqLevAlg MASS maxLik moments nleqslv numDeriv primes qrng randtoolbox trustOptim ucminf]; }; sfadv = derive2 { name="sfadv"; version="1.0.1"; sha256="1rfpm6km5pckwhqgpvidm6qsj5sjdaqqj5b0sgvpslivfa4c80cr"; depends=[gmm minpack_lm]; }; @@ -16010,7 +16081,7 @@ in with self; { sfdct = derive2 { name="sfdct"; version="0.1.0"; sha256="0p3ipp6x8vnsi94078n098yk9wglnawvzh19imcgk2c1l5lazwgf"; depends=[dplyr RTriangle sf sp tibble]; }; sfheaders = derive2 { name="sfheaders"; version="0.4.0"; sha256="0ig02nszrs6fkjkrkqibp23n4a8qr4i09yz7l741yjd0308ddg46"; depends=[geometries Rcpp]; }; sfinx = derive2 { name="sfinx"; version="1.7.99"; sha256="14v47y00qwvc2s0vzjw19hwn85nzj8lna539c75qq6zkn6kir6va"; depends=[]; }; - sfnetworks = derive2 { name="sfnetworks"; version="0.5.2"; sha256="0kywp90zc9wbqsbhp2nc3a3xhyqvhv0l033i4nnrkjf60v9sqam8"; depends=[crayon dplyr igraph lwgeom rlang sf sfheaders tibble tidygraph units]; }; + sfnetworks = derive2 { name="sfnetworks"; version="0.5.3"; sha256="1f3zz706chps73j9i4is1k94134kxyq4pwkg86qwqrlxlfd623ha"; depends=[crayon dplyr igraph lwgeom rlang sf sfheaders tibble tidygraph units]; }; sfo = derive2 { name="sfo"; version="0.1.1"; sha256="0ja0kyrr6vqwk9fj1hq9bvfkak2vgav0hlqpgn4sa9h9j1s8r4js"; depends=[]; }; sfsmisc = derive2 { name="sfsmisc"; version="1.1-12"; sha256="10h76pgzcxv1y5pkmba9607lvjrsyq62sq63s2n7ry7z5151h4lv"; depends=[]; }; sft = derive2 { name="sft"; version="2.2-1"; sha256="0fxz64ba58n6ghfqsgq64n1c7qkvi8c3lsa86732mil9w71yxw33"; depends=[fda SuppDists]; }; @@ -16053,6 +16124,7 @@ in with self; { shattering = derive2 { name="shattering"; version="1.0.7"; sha256="0dmb57pdgzwm001gfm1zm8ba7x71bp2vjk4ml0cy4r05hpdswfh3"; depends=[e1071 FNN NMF pdist pracma rmarkdown Ryacas slam]; }; shazam = derive2 { name="shazam"; version="1.1.0"; sha256="1jakx3fwhlswwbmkac25nmcrk70cyc2iypmmxlgd3wxaqbnrd97z"; depends=[alakazam ape diptest doParallel dplyr foreach ggplot2 igraph iterators kedd KernSmooth lazyeval MASS progress rlang scales seqinr stringi tidyr tidyselect]; }; shelltrace = derive2 { name="shelltrace"; version="3.5.1"; sha256="1xgbavaa26185i6q3907ds3bzq4xrw027x1sw5vsybqrxdz04jiz"; depends=[bmp tiff xlsx]; }; + shidashi = derive2 { name="shidashi"; version="0.1.0"; sha256="0h87fmk4z1rjsmv62m9si7z40aqz75xxgv3d02rh7z97bxz3hkml"; depends=[digest fastmap formatR httr jsonlite shiny yaml]; }; shiftR = derive2 { name="shiftR"; version="1.5"; sha256="18y2qzqx8hd6yph1wnsq4ygm16pcdszynh174xsrxrhvx2h9mi4x"; depends=[]; }; shinipsum = derive2 { name="shinipsum"; version="0.1.0"; sha256="0d94189hmg0bl8x0s8fpba5gcvb95sr9k9lbp3kk8482fc5h147n"; depends=[attempt DT dygraphs ggplot2 magrittr plotly]; }; shiny = derive2 { name="shiny"; version="1.7.1"; sha256="000xfa8jsl9kfqpps1zgrb26wbk3r2y15s60qx906hs1zdb20fy0"; depends=[bslib cachem commonmark crayon ellipsis fastmap fontawesome glue htmltools httpuv jsonlite later lifecycle mime promises R6 rlang sourcetools withr xtable]; }; @@ -16091,6 +16163,7 @@ in with self; { shinyRadioMatrix = derive2 { name="shinyRadioMatrix"; version="0.2.0"; sha256="1y45qj0229s2q7rkd443axg95bfzpjxdndk16irlgddfrzvrhs6r"; depends=[shiny]; }; shinySIR = derive2 { name="shinySIR"; version="0.1.2"; sha256="1g2xcm0n7chswrnw9zq3wz6mimzzf6avhkp1rcd24ga809346jcd"; depends=[deSolve dplyr ggplot2 shiny tidyr]; }; shinySearchbar = derive2 { name="shinySearchbar"; version="1.0.0"; sha256="1v80380vym31aw0i1ghwlbdi2xkf3n59w2as62ywqi79025x3w6y"; depends=[jsonlite shiny]; }; + shinySelect = derive2 { name="shinySelect"; version="1.0.0"; sha256="1s96ipcicpn7aj19rvsa48cm6izk2m84sd2w8qicqp7b5brg4jla"; depends=[fontawesome htmltools reactR shiny]; }; shinyShortcut = derive2 { name="shinyShortcut"; version="0.1.0"; sha256="101wz9s4rk7fbaqgm0r2v3v8za20vdxwq4vhkz8xr7y5pr65sxiq"; depends=[]; }; shinyTime = derive2 { name="shinyTime"; version="1.0.1"; sha256="1d830wf7d5ki7frbr1vgy9d0vllyfcylq7pfkspjkz64b2xfhah3"; depends=[htmltools shiny]; }; shinyToastify = derive2 { name="shinyToastify"; version="2.0.0"; sha256="0ipqwgl89pjiycwg78p0db45lbzry989kn6aqjsf79lpvghnk5qs"; depends=[fontawesome htmltools reactR shiny]; }; @@ -16118,10 +16191,11 @@ in with self; { shinyjqui = derive2 { name="shinyjqui"; version="0.4.0"; sha256="0ins0pmfis34jr0rimsp1k1aw856r3xjdnsvv8lkwqhvp58nzqah"; depends=[htmltools htmlwidgets jsonlite shiny]; }; shinyjs = derive2 { name="shinyjs"; version="2.0.0"; sha256="1zzq356dvd8ciajy6r5n4ybgx9xk7ydwv25j86xlcsqznkxdkkf2"; depends=[digest htmltools jsonlite shiny]; }; shinyloadtest = derive2 { name="shinyloadtest"; version="1.1.0"; sha256="0684p9anbc3qdn4rqkxp33nm0d04zb264b3blwa23pa5akis2klq"; depends=[curl dplyr ggplot2 httpuv jsonlite magrittr R6 rlang scales stringr svglite vroom websocket xml2]; }; - shinylogs = derive2 { name="shinylogs"; version="0.1.7"; sha256="1b4p0g1vf9wn643rybf382mw6mrrl49qsykh7npa3agcarwznmgr"; depends=[anytime bit64 data_table DBI digest htmltools jsonlite nanotime RSQLite shiny]; }; + shinylogs = derive2 { name="shinylogs"; version="0.2.0"; sha256="00rswic0kbrzr6ix88avsxdfnv2bx94kxjkln8li14zaqsdksivm"; depends=[anytime bit64 data_table digest htmltools jsonlite nanotime shiny]; }; shinymanager = derive2 { name="shinymanager"; version="1.0.400"; sha256="1np2yp5pn8g9i4jhysfgprmdn13cpw4vaaagrd72rnk2r4hpmyx4"; depends=[billboarder DBI DT htmltools openssl R_utils R6 RSQLite scrypt shiny]; }; shinymaterial = derive2 { name="shinymaterial"; version="1.2.0"; sha256="0nqakim0cx722sydbv12kgva1nis7h2i0lrvi9c0h54733x7lbza"; depends=[jsonlite sass shiny]; }; - shinymeta = derive2 { name="shinymeta"; version="0.2.0.2"; sha256="1wdfkkks8j510hdhv1h1j3cc8gb79l6z5jnchq62xx1dja12krkp"; depends=[callr fastmap fs htmltools rlang shiny sourcetools styler]; }; + shinymeta = derive2 { name="shinymeta"; version="0.2.0.3"; sha256="1lizg5sjg0f2axr9vk8z4w43lbyim83gd4dzx91dygknv3kgyp89"; depends=[callr fastmap fs htmltools rlang shiny sourcetools styler]; }; + shinymodels = derive2 { name="shinymodels"; version="0.1.0"; sha256="177c8ksv17ywyrdyxfr872hc1ajr0l3b9ra8as9q36qcpzl24v7i"; depends=[dplyr DT generics ggplot2 glue htmltools magrittr parsnip plotly purrr rlang scales shiny shinydashboard tidyr tidyselect tune yardstick]; }; shinyobjects = derive2 { name="shinyobjects"; version="0.2.0"; sha256="0fg5gyssia2fqar635vrqgfwpfrk4pqachsgg10y13ljp09lcdm3"; depends=[dplyr glue knitr magrittr pander purrr readr rlang rstudioapi shiny stringr styler tibble tidyr]; }; shinypanel = derive2 { name="shinypanel"; version="0.1.4"; sha256="0hdfpjfhyqj7ym3bwg5xmhnawl98q7mfl2wj950ysajqi88l91pr"; depends=[htmltools jsonlite shiny shinyBS shinyjs]; }; shinypanels = derive2 { name="shinypanels"; version="0.5.0"; sha256="1rslz9wl3gx11dm6il77j4k5swxvcfy5mf0zffbs4zk8xjgpzzj6"; depends=[glue htmltools shiny shinyjs]; }; @@ -16151,7 +16225,7 @@ in with self; { shp2graph = derive2 { name="shp2graph"; version="0-5"; sha256="1l9mg98hkb0bvr5dzd2p26g8mw5hqjxrym2gmbm10kyapvccfk56"; depends=[igraph maptools sp]; }; shrink = derive2 { name="shrink"; version="1.2.1"; sha256="0pd967wsys8fd7gyvr9y08km118yamfk5c1a1i2k8nr2ifpqmy0w"; depends=[MASS mfp rms survival]; }; shrinkDSM = derive2 { name="shrinkDSM"; version="0.1.0"; sha256="01yvs1shsp7npfm9w1caprb1x8w42zlzswc2fk9y6q340i51kfzm"; depends=[coda Rcpp RcppArmadillo RcppProgress shrinkTVP stochvol]; }; - shrinkTVP = derive2 { name="shrinkTVP"; version="2.0.3"; sha256="130x6rpvrng25l6mx3fskcvv9jyjzbvl6da35bvsw2j88qd3fra2"; depends=[coda GIGrvg Rcpp RcppArmadillo RcppProgress stochvol zoo]; }; + shrinkTVP = derive2 { name="shrinkTVP"; version="2.0.4"; sha256="15avxdrn4734p1hbv8q0kc2zngarsr96ca25dqv4kd75q721c9nz"; depends=[coda GIGrvg Rcpp RcppArmadillo RcppProgress stochvol zoo]; }; shuffle = derive2 { name="shuffle"; version="1.0.1"; sha256="0aqb11h340picx7z2jg3k46l3pr6fkknlpyzc0z89hhrc90pss48"; depends=[]; }; shuffleCI = derive2 { name="shuffleCI"; version="0.1.0"; sha256="1n9k28m1fcnw1my9a7v0gy9waygd48lab45vj9k2wwijbc325zai"; depends=[plotrix]; }; shutterplot = derive2 { name="shutterplot"; version="0.1.0"; sha256="129jv20m0dinb07lwiz9fxv4z7sxshcmjab2g0p5vrv8jlp9a0yv"; depends=[]; }; @@ -16193,6 +16267,7 @@ in with self; { simITS = derive2 { name="simITS"; version="0.1.1"; sha256="0b62lvknfqli6ki4w360b1ih9nsm6pinaqskgra6vl2nzsim3sal"; depends=[dplyr rlang]; }; simMP = derive2 { name="simMP"; version="0.17.3"; sha256="1pzg79dd08ds3pfzxnk9h95gaibicv00mnm0jb4i8v5is4gzrdhr"; depends=[Biostrings BSgenome doParallel foreach GenomeInfoDb GenomicRanges IRanges XVector]; }; simMSM = derive2 { name="simMSM"; version="1.1.41"; sha256="04icijrdc269b4hwbdl3qz2lyxcxx6z63y2wbak1884spn6bzbs8"; depends=[mvna survival]; }; + simPATHy = derive2 { name="simPATHy"; version="0.6"; sha256="0xiqcrdnn7pcbhykkjabfym6hqq9hrnjigav8nshs143s9wflw1q"; depends=[ggm graph gRbase htmlwidgets igraph mvtnorm qpgraph R_utils shiny shinydashboard]; }; simPH = derive2 { name="simPH"; version="1.3.13"; sha256="086060f78f1dmpa6cyhx160blchckplw04gs6997f1hwzswci2l2"; depends=[data_table dplyr ggplot2 gridExtra lazyeval MASS mgcv quadprog stringr survival]; }; simPop = derive2 { name="simPop"; version="1.2.1"; sha256="1rpjyffs7s40wlyv77ha6r282p08kp7x252nfiasbgxp5c7x17i0"; depends=[colorspace data_table doParallel e1071 EnvStats fitdistrplus foreach laeken lattice MASS nnet party plyr ranger Rcpp RcppArmadillo vcd VIM wrswoR]; }; simTargetCov = derive2 { name="simTargetCov"; version="1.0.1"; sha256="0gdqqwg9i2hga6l4s5x7wbbsm20b3sgwrci1g6hc04x1h9aawiw2"; depends=[MASS]; }; @@ -16251,6 +16326,7 @@ in with self; { simtrait = derive2 { name="simtrait"; version="1.0.21"; sha256="0l5x33ik4s8wlh9002dslygprh1q4j3nfr3s4yw8hpq12k5pvg8z"; depends=[PRROC]; }; simts = derive2 { name="simts"; version="0.1.1"; sha256="1b76grf7c14pgyhphplnil4lkzbwn3dih4pv4xdy721ih9n9llby"; depends=[broom dplyr magrittr purrr Rcpp RcppArmadillo robcor scales tidyr]; }; simukde = derive2 { name="simukde"; version="1.3.0"; sha256="0mpj8pfrlagc97v53idsiypjcpbaj07y6klanph5lkiwzsgbz8sv"; depends=[ks MASS mvtnorm]; }; + simulariatools = derive2 { name="simulariatools"; version="2.4.0"; sha256="0p6yg9hxiz326ghvmc2miimv4y091z4dqgxc07zcp5miqf7b07ds"; depends=[dplyr ggplot2 lubridate openair png raster RColorBrewer reshape2 reticulate scales]; }; simule = derive2 { name="simule"; version="1.3.0"; sha256="0jzyk1r2jfs7qivmy9x44c5bagy55jpy3hf0xpl9xnk409c3y2wd"; depends=[igraph lpSolve pcaPP]; }; sinaplot = derive2 { name="sinaplot"; version="1.1.0"; sha256="0zfq6l8wjvdj7rndsfyh0a2xjlxmn2ij1q50hg3xjfpwrjxcsck8"; depends=[plyr]; }; sinar = derive2 { name="sinar"; version="0.1.0"; sha256="0dywgqmvbrsygyvnln2mc5p6gaxvphr5byx7hkf0nkil54f2jzdf"; depends=[MASS numDeriv]; }; @@ -16272,10 +16348,11 @@ in with self; { siteymlgen = derive2 { name="siteymlgen"; version="1.0.0"; sha256="1176fnf39ars5cdjvy5w2k6b92qv51hy86s71sl8ghr0lwdq9f59"; depends=[data_table dplyr lubridate magrittr purrr rlist rmarkdown stringr yaml ymlthis]; }; sitmo = derive2 { name="sitmo"; version="2.0.2"; sha256="1hm89zi38ldgbskyx1cn7gm87yqy7zrxli8q05a36y1ndvazi3j4"; depends=[Rcpp]; }; sitools = derive2 { name="sitools"; version="1.4"; sha256="0c0qnvsv06g6v7hxad96fkp9j641v8472mbphvaxa60k3xc7ackb"; depends=[]; }; - sitree = derive2 { name="sitree"; version="0.1-11"; sha256="0zkcqnf6yj62alcz3d3alhk4aakdm3kpbkzxpddl6m81145p1qql"; depends=[data_table ggplot2]; }; + sitree = derive2 { name="sitree"; version="0.1-12"; sha256="0xhfq9w6rl11bb2l5n09byr2rbrqr9mli2qnnqcpz5dsy5bb17zv"; depends=[data_table ggplot2]; }; + sitreeE = derive2 { name="sitreeE"; version="0.0-8"; sha256="0jwxca8y0nn1aqx4c6gikgf31nb4dll543m0akd4jmqx6fc450kd"; depends=[data_table sitree]; }; sivs = derive2 { name="sivs"; version="0.2.5"; sha256="16w1yixb2wfgprnfm408l11nz9j28by7sz82x17rzmjb6p3n1jw5"; depends=[doParallel foreach glmnet pROC varhandle]; }; sizeMat = derive2 { name="sizeMat"; version="1.1.2"; sha256="1vbndadsn80ddrg471vp1qxf0gan38w6dkjk1p2npvfb47wdjj2h"; depends=[MASS matrixStats MCMCpack]; }; - sjPlot = derive2 { name="sjPlot"; version="2.8.9"; sha256="07b9p5wbb6xmyapg9j6i4cdcj7j9wj9gi30gljj6j2lj1flgdd7q"; depends=[bayestestR datawizard dplyr effectsize ggeffects ggplot2 insight knitr MASS parameters performance purrr rlang scales sjlabelled sjmisc sjstats tidyr]; }; + sjPlot = derive2 { name="sjPlot"; version="2.8.10"; sha256="1rnwhh271xj8xgvvlpqw9ain56mfz37fvl7f6jq9nzx9jxx95bjd"; depends=[bayestestR datawizard dplyr effectsize ggeffects ggplot2 insight knitr MASS parameters performance purrr rlang scales sjlabelled sjmisc sjstats tidyr]; }; sjdbc = derive2 { name="sjdbc"; version="1.6.1"; sha256="0cz5qc5lsipd3nlkzj8j03xmpzxp52c3q5av8pr7fm3vsdclawfk"; depends=[rJava]; }; sjlabelled = derive2 { name="sjlabelled"; version="1.1.8"; sha256="17gskxr43rgbg7syla3b78g2qgksq2kj07iad4139xycqxblxya0"; depends=[insight]; }; sjmisc = derive2 { name="sjmisc"; version="2.8.7"; sha256="17hcjb2j690qi2zrkwc14sr1wsid6dy6v7bfsf0bc94ql812k8g2"; depends=[dplyr insight magrittr purrr rlang sjlabelled tidyselect]; }; @@ -16286,20 +16363,20 @@ in with self; { skellam = derive2 { name="skellam"; version="0.2.0"; sha256="0r5wbs5h7xc3k2vjxd4axwnxr9cmwm008fcyj1vyixkg8fa680gx"; depends=[]; }; sketch = derive2 { name="sketch"; version="1.1.17"; sha256="17lb4fnlwvdxgsm8iipcx4v6fn1vkf5wr9zwmm6m4p770651z116"; depends=[base64enc glue htmltools jsonlite magrittr purrr rlang rstudioapi shiny]; }; sketcher = derive2 { name="sketcher"; version="0.1.3"; sha256="011lx15whrdj5q5h33h9brkzbn2fnpm1nx9ip1v9xl5xfkbj7952"; depends=[downloader dplyr imager jpeg magrittr png readbitmap stringr]; }; - skewMLRM = derive2 { name="skewMLRM"; version="1.3"; sha256="05w3a4cyb4v75pwh9zw2fqjrwz3x9567adysfffmcfgm497kypq4"; depends=[clusterGeneration doParallel foreach MASS matrixcalc moments mvtnorm]; }; + skewMLRM = derive2 { name="skewMLRM"; version="1.6"; sha256="16gr0haag0pqw7k7nvfqlc6s5i92lkpd0ghkgvlwgql8jzw7zmlk"; depends=[clusterGeneration doParallel foreach MASS matrixcalc moments mvtnorm]; }; skewlmm = derive2 { name="skewlmm"; version="1.0.0"; sha256="1z7rz520vmjqmnak2zgxnnj7yhg7k2phclx3ilvkwzn9v8pd224j"; depends=[dplyr furrr future ggplot2 ggrepel haven moments mvtnorm nlme numDeriv optimParallel purrr]; }; skewt = derive2 { name="skewt"; version="0.1"; sha256="1xm00zfzjv53cq9drfcx7w2ri5dwsq7kajrk2hc1mvw0b6s4x2ix"; depends=[]; }; skilljaR = derive2 { name="skilljaR"; version="0.0.1"; sha256="1qfb4irslbmidjq358bkhadr71armk4jps78xz5bm0kxbj2nljhq"; depends=[dplyr httr jsonlite magrittr purrr]; }; skimr = derive2 { name="skimr"; version="2.1.3"; sha256="02q5l1l1a9m602dg55gbb1zd3ymh0gxy6r815dj8cp769i8hqla1"; depends=[cli crayon dplyr knitr magrittr purrr repr rlang stringr tibble tidyr tidyselect vctrs withr]; }; sklarsomega = derive2 { name="sklarsomega"; version="3.0-1"; sha256="110j27wjj1z30b7y60lm6jdimb0x5yrj18qyb0m6m2fpsczg93w4"; depends=[dfoptim extraDistr hash LaplacesDemon Matrix mcmcse numDeriv spam]; }; skm = derive2 { name="skm"; version="0.1.5.4"; sha256="06g3bdncq2r56d8k3dr87gqnibypbsps0gj4jxkw9q1sq1yaff3v"; depends=[data_table magrittr plyr Rcpp RcppArmadillo RcppParallel]; }; - skmeans = derive2 { name="skmeans"; version="0.2-13"; sha256="1nks9k910fc0m07wpi9ridpyvgnnjlgw821mnvpv8skr4i75zy1w"; depends=[clue cluster slam]; }; + skmeans = derive2 { name="skmeans"; version="0.2-14"; sha256="1kkp9zdwk1k3q50xp8g0jqgg3x1qzgigfkg37bpac7542276vsqq"; depends=[clue cluster slam]; }; sknifedatar = derive2 { name="sknifedatar"; version="0.1.2"; sha256="0zi9anrxg9zkgxlzlfyry5i5zlj3fs8580mp6xckkl096dry9ih0"; depends=[cli dplyr knitr magrittr modeltime parsnip purrr rlang rsample tibble tidyr tune]; }; skpr = derive2 { name="skpr"; version="1.0.0"; sha256="1p8wwan29jgc4p9pk0x19wwqnvy012bhci6s49za1wzvzxh6w7ia"; depends=[car doParallel doRNG foreach future gt iterators lazyeval lme4 lmerTest magrittr progress promises Rcpp RcppEigen rintrojs scales shiny shinyjs shinythemes survival viridis]; }; skynet = derive2 { name="skynet"; version="1.4.0"; sha256="1ir8sw99fvdy8zp7ncgdnggr8hv1ph21kvdi9my42vlsh2fqi5ja"; depends=[data_table dplyr geosphere ggplot2 ggrepel httr igraph leaflet maps stringr]; }; skyscapeR = derive2 { name="skyscapeR"; version="1.0.0"; sha256="1x3s003wdmnf0h1k3gl6cvd35g516y7v2yzahr3wxk2np832kjli"; depends=[doParallel foreach httr MESS numDeriv oce plotrix png RColorBrewer rootSolve swephR zoo]; }; slackr = derive2 { name="slackr"; version="3.2.0"; sha256="10klljhkycnyqkzq73gj71c2phdqx9l3lb2jzancc59x21wjqn3b"; depends=[cachem dplyr ggplot2 httr jsonlite magrittr memoise rlang tibble withr]; }; - slam = derive2 { name="slam"; version="0.1-48"; sha256="1ppsvkph4v1dffxgp12a4wnr9arj7pkmh4qv0and3f6nbz9k42qa"; depends=[]; }; + slam = derive2 { name="slam"; version="0.1-49"; sha256="044hnfqbx57v5zr64gl09b5arj45swn9ywqzrl9rsc8267ys0028"; depends=[]; }; slanter = derive2 { name="slanter"; version="0.2-0"; sha256="024dkman0r5qzc215gw0ds932vdaz8krrhv64fjw9pni37ixc3mf"; depends=[Matrix pheatmap pracma]; }; slasso = derive2 { name="slasso"; version="1.0.0"; sha256="0k83szk6jzvn5353p9ia2ipmjyl65ivx95rj62rq8dyjfrdyzs0d"; depends=[cxxfunplus fda fda_usc inline MASS matrixcalc matrixStats plot3D Rcpp RcppArmadillo]; }; sld = derive2 { name="sld"; version="0.3.3"; sha256="1ggvyx1nsfc1wwwzlqgvk6p5xxq6r6yx2rjv0290q7p06gc3i1ll"; depends=[lmom]; }; @@ -16340,7 +16417,7 @@ in with self; { smd = derive2 { name="smd"; version="0.6.6"; sha256="1nvlka2prqh1hcj4ngpj2c2gmfryziijqwjyfy9fmq78skiq0jij"; depends=[MASS]; }; smdata = derive2 { name="smdata"; version="1.2"; sha256="1p26b46kg4hmhs2fl9h9vchar00llqv58ylx438bjgzz4f229qvr"; depends=[]; }; smds = derive2 { name="smds"; version="1.0"; sha256="0aqf3wfn6mlsl8a32gaf9qdpyxwsx19g6mma8qzgaysdmk6vhbpd"; depends=[MASS]; }; - smerc = derive2 { name="smerc"; version="1.5"; sha256="0vsilvm0g9ghcpyvdcayc0iyl94gyr6zy30nbhnb0hxs4m0pgiq9"; depends=[MESS pbapply randtoolbox Rcpp RcppProgress sp]; }; + smerc = derive2 { name="smerc"; version="1.5.2"; sha256="0c33xw4kk6x37fscv57lgxxrsg3ypgdsz5xfl4qrqg4svp48f7j7"; depends=[MESS pbapply randtoolbox Rcpp RcppProgress sp]; }; smfishHmrf = derive2 { name="smfishHmrf"; version="0.1"; sha256="1k6mpyp11zv5rc3k98baymr903p2pf424nf9xng20q1li8s8y2ab"; depends=[fs pracma Rdpack]; }; smfsb = derive2 { name="smfsb"; version="1.3"; sha256="1328w7zpwd3nam6ha4bh14g919jjl87v323ijmbp1j71gc64nn2i"; depends=[abind]; }; smicd = derive2 { name="smicd"; version="1.1.2"; sha256="1v80sshsp3qlc1y7yz1pl4s2jk6khdsli3z2v0cjxfsv1izfd02x"; depends=[formula_tools Hmisc ineq laeken lme4 MuMIn mvtnorm truncnorm weights]; }; @@ -16370,7 +16447,7 @@ in with self; { smss = derive2 { name="smss"; version="1.0-2"; sha256="04lgfdcvnzpnpplyl62fy7slyiy8wkqpjjrzmclgqis3c9zkkncp"; depends=[]; }; smurf = derive2 { name="smurf"; version="1.1.2"; sha256="00q54pg42anilhcshhjvv277mkszbpzpkf1g7srs7cjd5skjvsaf"; depends=[catdata glmnet MASS Matrix mgcv RColorBrewer Rcpp RcppArmadillo speedglm]; }; smvgraph = derive2 { name="smvgraph"; version="0.1.2"; sha256="06pvnrhd3q913nxhk1icj11xkd1is3qi31b0kv6zbc0qkixn1ym7"; depends=[DescTools fmsb MASS shiny shinydashboard sortable]; }; - sn = derive2 { name="sn"; version="2.0.0"; sha256="0sl8qzy9isy5fq8qxh1fg5285jzgy895nbgz8gdq5d0r6zdwrmmb"; depends=[mnormt numDeriv quantreg]; }; + sn = derive2 { name="sn"; version="2.0.1"; sha256="1z58kwvq8igjm3biyyjdlhs2qq8hfjq5d9x0lzy80yk5hw08kcw6"; depends=[mnormt numDeriv quantreg]; }; sna = derive2 { name="sna"; version="2.6"; sha256="0ai0v4538d30m4wks5s3lch1yfmx1ml0nnrz7ihs097lv586a09s"; depends=[network statnet_common]; }; snahelper = derive2 { name="snahelper"; version="1.3.0"; sha256="130pzmnvcqqgpi7h8fn61qrshq61h6w5i25shbng6bbw5kw4kchf"; depends=[colourpicker DT formatR ggplot2 ggraph graphlayouts igraph miniUI rstudioapi shiny]; }; snakecase = derive2 { name="snakecase"; version="0.11.0"; sha256="1ky1x2cp5rd0ffd9m1fji9sq4z4jsrpxzg30brw8bb4ihfjj114r"; depends=[stringi stringr]; }; @@ -16447,11 +16524,11 @@ in with self; { sound = derive2 { name="sound"; version="1.4.5"; sha256="1kbbb614d0fmj9l0yjiwf5yqnl7sby4xklp7qwp6rwjvq9bnm0ab"; depends=[]; }; soundcorrs = derive2 { name="soundcorrs"; version="0.4.0"; sha256="1azvsv3bghlab8q24wbb6xwd5a4cydx1cagvhk8h0h5ib9957zab"; depends=[]; }; soundecology = derive2 { name="soundecology"; version="1.3.3"; sha256="16h6gbdlyav7wbfisdv1f2zsqhr45liidgj7qqk8giwjxgan8q97"; depends=[ineq oce pracma seewave tuneR vegan]; }; - soundgen = derive2 { name="soundgen"; version="2.4.0"; sha256="0rynd8212njvp0rfgh9pddng1m3815mjgvywfnx50ipamj11v13z"; depends=[dtw mvtnorm phonTools reshape2 seewave shiny shinyBS shinyjs signal tuneR zoo]; }; + soundgen = derive2 { name="soundgen"; version="2.5.0"; sha256="0shvrz37l65ka8yxqzynanz33wmiiagglnvgqy4ihs6x8yxx10qs"; depends=[doParallel dtw foreach mvtnorm phonTools reshape2 seewave shiny shinyBS shinyjs signal tuneR zoo]; }; sourceR = derive2 { name="sourceR"; version="1.1.0"; sha256="09mikl6rkigx2bdnwqsgxwksz40lspq27hsrhlnfyz5yhs31ssda"; depends=[assertthat cluster dplyr gplots gtools R6 Rcpp reshape2 SPIn tensorA]; }; sourcetools = derive2 { name="sourcetools"; version="0.1.7"; sha256="1jnjir0q2dj724f1mjm6p5h77yzyx6xcqy9r2g7gmcxkxw349627"; depends=[]; }; sovereign = derive2 { name="sovereign"; version="1.2.0"; sha256="06maaw366k0pfdmj09rj7l4chv6mynhs67mmr98gfwqhsabhqfxh"; depends=[broom dplyr furrr future ggplot2 gridExtra lmtest lubridate magrittr mclust purrr randomForest sandwich stringr strucchange tidyr xts zoo]; }; - sp = derive2 { name="sp"; version="1.4-5"; sha256="1nh9izsnszzm5kbq461w8bi0yh7fqzb74b2zmpg5qis0slbb5vkb"; depends=[lattice]; }; + sp = derive2 { name="sp"; version="1.4-6"; sha256="09m2ddbrbs2aqnq5si42ipa0g1vbd0pxg4zbcx59is2047pv7sws"; depends=[lattice]; }; sp23design = derive2 { name="sp23design"; version="0.9"; sha256="1ihvcld19cxflq2h93m9k9yaidhwixvbn46fqqc1p3wxzplmh8bs"; depends=[mvtnorm survival]; }; spAddins = derive2 { name="spAddins"; version="0.2.0"; sha256="19wbcghcf0f9qvqy92jhsdcpmd9b4lkhxndvr71cyhzga539lh1n"; depends=[magrittr purrr rstudioapi stringr]; }; spBFA = derive2 { name="spBFA"; version="1.1"; sha256="1jx1w9ipf8q08vx1w80s4h7nvgl2xqwcj7afci3j78psc6bigazi"; depends=[msm mvtnorm pgdraw Rcpp RcppArmadillo]; }; @@ -16466,7 +16543,7 @@ in with self; { spMaps = derive2 { name="spMaps"; version="0.4.0"; sha256="0n9693aam7gsclfhijq7cy61l0w4mm5vf3rjaz5w0jrz77lrkprh"; depends=[raster rgeos sp]; }; spNNGP = derive2 { name="spNNGP"; version="0.1.6"; sha256="12ys92r2xpmnhy6hw8sldcz0y28gnxpwnj6sm5jc1lfyz7k1ww6f"; depends=[coda Formula RANN]; }; spNetwork = derive2 { name="spNetwork"; version="0.2.1"; sha256="0hmg68v5a7d1ixwj9nvh7kd948r7kspar6nd3yp02mgj495ps1z8"; depends=[BH cubature data_table future_apply ggplot2 igraph maptools progressr raster Rcpp RcppArmadillo RcppProgress Rdpack rgeos SearchTrees sp spdep]; }; - spOccupancy = derive2 { name="spOccupancy"; version="0.1.2"; sha256="1h6bw3prxc3bpbx64413bf1j6vm9slgb6gpgh4695czzzgpps9yj"; depends=[abind coda doParallel foreach lme4 RANN spBayes]; }; + spOccupancy = derive2 { name="spOccupancy"; version="0.1.3"; sha256="0xwqnhi7iw1gwgggxaaahrnc8d5cdr8cjz3jj5v835lc0jg0wxcf"; depends=[abind coda doParallel foreach lme4 RANN spBayes]; }; spTDyn = derive2 { name="spTDyn"; version="2.0.1"; sha256="1wprn2adw4l5pkwkfzdpcr07jxgycx9kaf8w8mfv27nka5hacgqx"; depends=[coda sp spacetime spTimer]; }; spThin = derive2 { name="spThin"; version="0.2.0"; sha256="0j10j1cbbwp3baqm3b59rxlnd643mkx1mirlxpnr1ad2g7xpm69f"; depends=[fields knitr spam]; }; spTimer = derive2 { name="spTimer"; version="3.3.1"; sha256="0lf39n32ifsmbcf35h0g60xniw72mlrzvzax3k6kz5c5k1wszlba"; depends=[coda extraDistr sp spacetime]; }; @@ -16488,7 +16565,7 @@ in with self; { spamtree = derive2 { name="spamtree"; version="0.2.1"; sha256="06j0qjhdjgpbad82gq6zgp6vbh6rdpnbpnkj0836lmi1180x7fay"; depends=[dplyr FNN magrittr Rcpp RcppArmadillo rlang tibble]; }; spanel = derive2 { name="spanel"; version="0.1"; sha256="1riyvvfij277mclgik41gyi01qv0k466wyk2wbqqhlvrlj79yzsc"; depends=[]; }; spanish = derive2 { name="spanish"; version="0.4.2"; sha256="15drc11lh0qxpww50p0smi8qxfbln82bx0yd74jqf71irhk5jxyp"; depends=[magrittr xml2]; }; - spant = derive2 { name="spant"; version="1.15.0"; sha256="1kr5ainz31r8fl052id8i4v9ybswp7mk5jxhh7pim9df3ndxfsi5"; depends=[abind complexplus fields foreach irlba jsonlite magrittr minpack_lm mmand nloptr numDeriv plyr pracma ptw RNifti RNiftyReg signal smoother stringr]; }; + spant = derive2 { name="spant"; version="1.16.0"; sha256="07l5wzwjjgwdyl7cc988icv0z96108lz0f092jgsbvv75ml6nnlh"; depends=[abind expm fields foreach irlba jsonlite magrittr minpack_lm mmand nloptr numDeriv plyr pracma ptw RNifti RNiftyReg signal smoother stringr]; }; sparcl = derive2 { name="sparcl"; version="1.0.4"; sha256="138krflvfdlx4hlh90mswds51i8aw2vv00gm5lgkfsvxj4w324jg"; depends=[]; }; spark_sas7bdat = derive2 { name="spark.sas7bdat"; version="1.4"; sha256="1s1hd6hvjxnfb3w10v93pggijmm2h4rcsf7ckl34j2sw9bvv7zka"; depends=[sparklyr]; }; sparkavro = derive2 { name="sparkavro"; version="0.3.0"; sha256="0g6ac9msfbx8f8j8rj0hvlxjsn317zyam207q7i8kf0hshs1r58f"; depends=[DBI dplyr sparklyr]; }; @@ -16530,7 +16607,7 @@ in with self; { sparsevar = derive2 { name="sparsevar"; version="0.1.0"; sha256="1kcy6bm04mccky529nryy5l001bv71hx304ysiabl4myakw0rwy7"; depends=[corpcor doParallel ggplot2 glmnet Matrix mvtnorm ncvreg picasso reshape2]; }; sparsevb = derive2 { name="sparsevb"; version="0.1.0"; sha256="1cigq8hwymrrkiy3iyrxsjjbj228ahrd7mq9lqar4jlb925jzqx4"; depends=[glmnet Rcpp RcppArmadillo RcppEnsmallen selectiveInference]; }; sparsio = derive2 { name="sparsio"; version="1.0.1"; sha256="181kzs9x3h497c7shfalbzrjz05bkj7mmjh9nyphxyi2jjrr6y1q"; depends=[Matrix Rcpp]; }; - sparta = derive2 { name="sparta"; version="0.8.1.1"; sha256="19gqfrzqnks6vx8d4jif3finc39whaxq3zid7hzd3cv28wv8wbz7"; depends=[Rcpp RcppArmadillo]; }; + sparta = derive2 { name="sparta"; version="0.8.2"; sha256="0gvpa0vikkn51jih4ji569f04dhxrblir761i6xp6r0dh7mifi9i"; depends=[Rcpp RcppArmadillo]; }; spass = derive2 { name="spass"; version="1.3"; sha256="1c148z0i3d185hnf54xmgppjrblv3b2s3sm0lmj78gvav04mj5s4"; depends=[geepack MASS multcomp mvtnorm Rcpp]; }; spatPomp = derive2 { name="spatPomp"; version="0.28.0.0"; sha256="0yql6llgclynd2nv1y4sm1a6lsc87003bqbq9skh3lgvdgbg5qsr"; depends=[abind dplyr foreach ggplot2 magrittr pomp rlang stringr tidyr]; }; spatgraphs = derive2 { name="spatgraphs"; version="3.2-2"; sha256="09bbcqgmbg6a65mnxivr4pghsanj22x1j0l4hq8bzpwgbas7byhy"; depends=[Matrix Rcpp]; }; @@ -16540,7 +16617,6 @@ in with self; { spatialEco = derive2 { name="spatialEco"; version="1.3-7"; sha256="0yhv4amqwbmcx6anzyrsmlrk25ishdlwyigyw9snd9d2v5k88s1q"; depends=[MASS raster rgeos sf sp spatstat_core spatstat_geom spdep]; }; spatialRF = derive2 { name="spatialRF"; version="1.1.3"; sha256="1ganbsp7krazl90mdlq23g227ixmxpk4yzxl47rayd431vg6fys1"; depends=[doParallel dplyr foreach ggplot2 huxtable magrittr patchwork ranger rlang tibble tidyr tidyselect viridis]; }; spatialTIME = derive2 { name="spatialTIME"; version="1.2.0"; sha256="0pmpk2kfh53gfzw33ncr1pjzyh7zprkdwgxqgajvd8y2wb90a462"; depends=[crayon dplyr furrr future ggplot2 ggpubr magrittr pheatmap plyr purrr RColorBrewer rlang rlist scales spatstat_core spatstat_geom tidyr tidyselect viridis]; }; - spatialfusion = derive2 { name="spatialfusion"; version="0.6-4"; sha256="18ji1pps5kb0mbff620mw7zm6nzyy3nfclmcpl677xd9927apvn9"; depends=[fields Rcpp rstan SDraw sp]; }; spatialnbda = derive2 { name="spatialnbda"; version="1.0"; sha256="14mx5jybymasyia752f3vnr5vmswcavbz8bpqr69vlxphw27qkwk"; depends=[mvtnorm SocialNetworks]; }; spatialprobit = derive2 { name="spatialprobit"; version="0.9-11"; sha256="1cpxxylc0pm7h9m83m2cklrh4jni5x79r5m5gibxi6viahwxn9kc"; depends=[Matrix mvtnorm spdep tmvtnorm]; }; spatialreg = derive2 { name="spatialreg"; version="1.2-1"; sha256="10d0gd21s84r7d5i1h62zavb40ws9c6vikrk8qjii25a66rvch2c"; depends=[boot coda expm gmodels LearnBayes MASS Matrix nlme sf spData spdep]; }; @@ -16551,7 +16627,7 @@ in with self; { spatsoc = derive2 { name="spatsoc"; version="0.1.16"; sha256="1pyw6606kwskgcfnzvgzvy8n4i9s3mmn1789d1lhk04h14r33fns"; depends=[adehabitatHR data_table igraph rgeos sp]; }; spatstat = derive2 { name="spatstat"; version="2.2-0"; sha256="0lz3sidn05xjswxaxhagal6jj5hra6aya0azxybjw7mgspl903wg"; depends=[spatstat_core spatstat_data spatstat_geom spatstat_linnet spatstat_utils]; }; spatstat_Knet = derive2 { name="spatstat.Knet"; version="2.0-0"; sha256="1w9ag7v18mvy4dl1gz2w8xjhw9n2sf9zycqz3mraajis831c76ix"; depends=[Matrix spatstat_core spatstat_data spatstat_geom spatstat_linnet spatstat_sparse spatstat_utils]; }; - spatstat_core = derive2 { name="spatstat.core"; version="2.3-1"; sha256="1fq6ynds66d836drf758syqhfz0341fxif0r5hbf5lfkwp3a2wfk"; depends=[abind goftest Matrix mgcv nlme rpart spatstat_data spatstat_geom spatstat_sparse spatstat_utils tensor]; }; + spatstat_core = derive2 { name="spatstat.core"; version="2.3-2"; sha256="0g7nj8nf9ywhdbc5irxlry6kzq6bwwbkk9cp22kyv1wigycnskbz"; depends=[abind goftest Matrix mgcv nlme rpart spatstat_data spatstat_geom spatstat_sparse spatstat_utils tensor]; }; spatstat_data = derive2 { name="spatstat.data"; version="2.1-0"; sha256="0csmz5vjaxnznkbsfah8qd3v8p0y56jvis01ialxzvf71snl160v"; depends=[Matrix spatstat_utils]; }; spatstat_geom = derive2 { name="spatstat.geom"; version="2.3-0"; sha256="1iz9zi45nli5lf96ng6bqqbl4ix3zxzlfclkg4cdb9h98nj4c5vv"; depends=[deldir polyclip spatstat_data spatstat_utils]; }; spatstat_gui = derive2 { name="spatstat.gui"; version="2.0-0"; sha256="0v26pmi6ir38hsfhkmkz7njf8b12y8dgacqz54vy9giq73k71j14"; depends=[rpanel spatstat_core spatstat_data spatstat_geom spatstat_linnet spatstat_utils]; }; @@ -16600,7 +16676,7 @@ in with self; { spelling = derive2 { name="spelling"; version="2.2"; sha256="179nj9w1v27qq9q5240ddvggp0795998sxyqjvbqjvq9dmach3bl"; depends=[commonmark hunspell knitr xml2]; }; spemd = derive2 { name="spemd"; version="0.1-1"; sha256="1aw8dg2fm8qd95bgim2kjwp7ax4b2g78521llsxv7fhdj9hl7rgw"; depends=[MBA sp spdep]; }; sperich = derive2 { name="sperich"; version="1.5-8"; sha256="0v4mnv9nl0dvmmfx10w03k02pwjjnip9526m3j1kpgn6c4wk1h93"; depends=[foreach rgdal sp]; }; - sperrorest = derive2 { name="sperrorest"; version="3.0.2"; sha256="195bdg8fd619z0i8jw1rm1zm2qcdq7hb2h5ynq1lf3a2j0y3fdpl"; depends=[future future_apply ROCR stringr]; }; + sperrorest = derive2 { name="sperrorest"; version="3.0.4"; sha256="169bv07vwlbn2ihw0f8hx10qrfdww9lqb2j8wgrkh1xnkskz13hv"; depends=[dplyr future future_apply ROCR stringr]; }; spex = derive2 { name="spex"; version="0.7.1"; sha256="0lsmh1sywd4si0v10aix44hybwph3gan8w8cxz956dcgkz60p41v"; depends=[crsmeta quadmesh raster reproj sp]; }; spfda = derive2 { name="spfda"; version="0.9.0"; sha256="156vs1f75x0wbf65fwzkhlbda649sryf58xixi7gbfjzn873w111"; depends=[mathjaxr]; }; spflow = derive2 { name="spflow"; version="0.1.0"; sha256="0a5nirccwcc2z4dn3gxdlhdjz7sxv1r23clawy0kwn4ggdkmphp1"; depends=[coda Matrix Rdpack RSpectra]; }; @@ -16649,7 +16725,7 @@ in with self; { spm = derive2 { name="spm"; version="1.2.1"; sha256="0gr6dc5xcz4y84iibkfi3gi84yij5vvazi1yrwd54jblf3fx32jr"; depends=[biomod2 gbm gstat psy randomForest ranger sp]; }; spm12r = derive2 { name="spm12r"; version="2.8.3"; sha256="04bv4x7p2vv9n8zi5axpkcj13h6q08lc6qyd1czvxrpdmzsp40yb"; depends=[git2r matlabr neurobase oro_nifti R_utils]; }; spm2 = derive2 { name="spm2"; version="1.1.0"; sha256="0aw6b4j0b452hf3vi47id3r4qnmngzzfa9cdh09rammj3mvmqb4i"; depends=[e1071 gbm glmnet gstat MASS nlme psy randomForest ranger sp spm]; }; - spmoran = derive2 { name="spmoran"; version="0.2.2"; sha256="0qympyy5qwcxxpi3ygvsac8wnzw83c3pjiq1hqj1zd7immx2wp9a"; depends=[doParallel fields FNN foreach ggplot2 Matrix rARPACK RColorBrewer sp spdep vegan]; }; + spmoran = derive2 { name="spmoran"; version="0.2.2.1"; sha256="095c1wl3232gkaf4q02k6awsb4y031y0ss4345yw5xxxcrr5g7jj"; depends=[doParallel fields FNN foreach ggplot2 Matrix rARPACK RColorBrewer sp spdep vegan]; }; spnet = derive2 { name="spnet"; version="0.9.1-0"; sha256="1fy0fpgz2k985brfqyza1l49y0w2j9z308n542pgmkzqsnsdscpw"; depends=[shape sp]; }; spnn = derive2 { name="spnn"; version="1.2.1"; sha256="1yj89j7nynfyw1ikm6q5kdwdgiiwxx0aa6kgnri5wfnb4l0356l7"; depends=[MASS Rcpp RcppArmadillo]; }; spocc = derive2 { name="spocc"; version="1.2.0"; sha256="114xlwd9200ysgkcwxgjc5awj50j4k4v1lgbdjzs7gv9bvdlbb2b"; depends=[crul data_table jsonlite lubridate rbison rebird rgbif ridigbio rvertnet tibble wellknown whisker]; }; @@ -16665,7 +16741,7 @@ in with self; { spotifyr = derive2 { name="spotifyr"; version="2.2.3"; sha256="1gpi7d40rdx4dvx5699xj5zisz48arwni18sszvp8phvhgqbj0lh"; depends=[assertthat dplyr genius ggridges httr janitor jsonlite lubridate magrittr purrr readr rlang rvest stringr tibble tidyr xml2]; }; spotoroo = derive2 { name="spotoroo"; version="0.1.2"; sha256="04zmb0smljr0yszhd789mqm5ds3l71k5cfd9v173d04r5vv8z77a"; depends=[cli dplyr geodist ggbeeswarm ggExtra ggplot2 ggrepel patchwork progress]; }; spp = derive2 { name="spp"; version="1.16.0"; sha256="08zxxgyp0h6733b08jmml7k4rhfd3mi5dda3jrzid0s184y0z29w"; depends=[BH caTools Rcpp Rsamtools]; }; - spray = derive2 { name="spray"; version="1.0-11"; sha256="0zg7rhsxbbrbvjv4azkyl9fd5kgh0a5xnkr9lnaqiss8z109jl6v"; depends=[magic mathjaxr partitions Rcpp]; }; + spray = derive2 { name="spray"; version="1.0-16"; sha256="1js6bdvz1sw1rnaa4k2pbkk5sm6rm3xn0fgg1w1jxqws817wpyib"; depends=[disordR magic mathjaxr partitions Rcpp]; }; spreadr = derive2 { name="spreadr"; version="0.2.0"; sha256="180dvr39i1glc0jllsnnglwrxh133q20v7px2fmdi7229pr175id"; depends=[assertthat extrafont ggplot2 igraph Matrix Rcpp]; }; spreval = derive2 { name="spreval"; version="1.0.0"; sha256="0949ms3d2r94vbsqyfma4vfavf0gdq58xs7nkirgrfxjd1a65vfm"; depends=[interp timeDate]; }; sprex = derive2 { name="sprex"; version="1.4.1"; sha256="14idml4mipd4wyza7hqf49ww4dparmwaps35hxm8jg5h0w1pgh7j"; depends=[swfscMisc]; }; @@ -16723,7 +16799,7 @@ in with self; { ssgraph = derive2 { name="ssgraph"; version="1.12"; sha256="0mcg8bzgx0376f72xxqmsfwmnmfk6lcmam19d28psr1sxnhngklj"; depends=[BDgraph]; }; ssh = derive2 { name="ssh"; version="0.8.0"; sha256="0y9rrvn21mc9ivjlz6zmg5h282d2gycyjda8sh9k0gx0y4c2m30i"; depends=[askpass credentials]; }; ssh_utils = derive2 { name="ssh.utils"; version="1.0"; sha256="08313zzzgcyvzkrkq0w0yf748ya1a9shx5xnan5891v0lah9v0b1"; depends=[stringr]; }; - sship = derive2 { name="sship"; version="0.7.1"; sha256="09pgpwhm63n266v9c9g4mp1461dlf4fhigqjnf1cpagsbgil8raj"; depends=[httr jsonlite openssl RCurl yaml]; }; + sship = derive2 { name="sship"; version="0.7.3"; sha256="0ac882x8p131iy61qkgaiax073387qsc5ahmxw4vvhhlks0kssi2"; depends=[httr jsonlite openssl RCurl yaml]; }; ssimparser = derive2 { name="ssimparser"; version="0.1.0"; sha256="1h4jwfcbsimwkwwfpjdi9mipc8z8ia6b6ha6v9dz7ghgpp1a2919"; depends=[airportr dplyr magrittr stringr tidyr]; }; ssize_fdr = derive2 { name="ssize.fdr"; version="1.2"; sha256="0y723lwsnmk3rxbhlsrny9hiy07a5p255ygy9qkj6mri64gk1hby"; depends=[]; }; ssizeRNA = derive2 { name="ssizeRNA"; version="1.3.2"; sha256="1qw10yswzpg28fhvr6rsq0gh7xivfapw64gxc0hakb1nc31jf8ky"; depends=[Biobase edgeR limma MASS qvalue ssize_fdr]; }; @@ -16740,7 +16816,7 @@ in with self; { sstModel = derive2 { name="sstModel"; version="1.0.0"; sha256="04dvj6dbxidn1df2rslppl2pw2ql09rag39jrzdbnv6z20szbbd9"; depends=[data_table MASS openxlsx readxl shiny shinydashboard]; }; ssvd = derive2 { name="ssvd"; version="1.0"; sha256="1fdpr38qi59ijrz16jixn6ii1hvmxfjirjqfcp7dxrqz9nx8x0sk"; depends=[]; }; ssym = derive2 { name="ssym"; version="1.5.7"; sha256="0l5d921vlhd4qwddllrgcxpq3bhivvy5ikh3ixdy3s140rzpgwrv"; depends=[Formula GIGrvg normalp numDeriv sandwich survival]; }; - st = derive2 { name="st"; version="1.2.6"; sha256="0v2bii21c0dg25zbf2379q7jy6z4z93hpw3rd32gm77bvgr0fd40"; depends=[corpcor fdrtool sda]; }; + st = derive2 { name="st"; version="1.2.7"; sha256="0j29k9fg8659yw1jwmcakiic51rin1dj1fmvpapy2wmz4c3pr0fp"; depends=[corpcor fdrtool sda]; }; stR = derive2 { name="stR"; version="0.4"; sha256="120k8k1l8cfy8x746808jym7lnaplgh4s3lycgyq2wia2c35r0rc"; depends=[foreach forecast Matrix quantreg rgl SparseM]; }; sta = derive2 { name="sta"; version="0.1.5"; sha256="0q9pplx4ifndvbh2bfa96vjbcaaqdj6bq57kwlzhavq6hjq7d56v"; depends=[doParallel foreach geoTS iterators mapview raster RColorBrewer rgdal trend]; }; staRdom = derive2 { name="staRdom"; version="1.1.23"; sha256="0gsix1dxk4gn2iq0zqbm7fyzxxnyzbgdlcbk11lqirx9x0xmwj80"; depends=[cdom data_table doParallel dplyr drc eemR foreach GGally ggplot2 gtools matrixStats MBA multiway pracma R_matlab readr stringr tibble tidyr viridisLite zoo]; }; @@ -16756,12 +16832,14 @@ in with self; { stabs = derive2 { name="stabs"; version="0.6-4"; sha256="1nf1yg14cgxrs4np1yghpzw1nczaslfv3rvf3918wrlzg0vp6l7q"; depends=[]; }; stackoverflow = derive2 { name="stackoverflow"; version="0.7.0"; sha256="0zv8bxzw4pgaa5ra8wsb9p7g8bwffdhc6gqsfrcs61zva7v9izc2"; depends=[]; }; stacks = derive2 { name="stacks"; version="0.2.1"; sha256="0a69fvj48npcbm0jj0506mq5m9hdprva247nyhiays6ar4ic52kv"; depends=[butcher cli dials dplyr foreach generics ggplot2 glmnet glue parsnip purrr recipes rlang rsample tibble tidyr tune workflows workflowsets yardstick]; }; + stacomiR = derive2 { name="stacomiR"; version="0.6.0"; sha256="0mcq7lcwcz9s18vdd7762dfr2fyb5fqvnv0b5ljp7kdbr3ia977y"; depends=[dplyr ggplot2 Hmisc intervals lattice lubridate magrittr mgcv pool RColorBrewer reshape2 rlang RPostgres stacomirtools stringr withr xtable]; }; stacomirtools = derive2 { name="stacomirtools"; version="0.6.0"; sha256="1qy9rw38qa0ng7gcnbccws8cm8175rficm5b1jn956qbkcxkz0w8"; depends=[DBI pool RODBC RPostgres xtable]; }; stagePop = derive2 { name="stagePop"; version="1.1-1"; sha256="0949r5ibl3sb10sr5xsswxap3wd824riglrylk7fx43ynsv5hzpy"; depends=[deSolve PBSddesolve]; }; stagedtrees = derive2 { name="stagedtrees"; version="2.2.0"; sha256="01qb8pw0al3b3b6smcapd61i81p6xw3hh1x8i6dsb73pdvpbfyxj"; depends=[]; }; staggered = derive2 { name="staggered"; version="1.1"; sha256="0z9358qbgn637j8iz5qwr4nyrlvi9w85l325vxpc61mcwksx5ip8"; depends=[coop dplyr magrittr MASS purrr Rcpp RcppEigen reshape2 tidyr]; }; stam = derive2 { name="stam"; version="0.0-1"; sha256="1x1j45fir64kffny0nssb2hwn4rcp8gd2cjv6fw4yy0l4d0xi5iv"; depends=[np sp]; }; stampr = derive2 { name="stampr"; version="0.2"; sha256="10mc71kgnw5712q2gvzd4bmjaw1879r7s599hfsjap21idqb2k2m"; depends=[deldir maptools raster rgdal rgeos sp spdep]; }; + stan4bart = derive2 { name="stan4bart"; version="0.0-1"; sha256="0a4ajv00zx15ncw79biniq7y9x3fql130pybii07l7kp3m7ccgjj"; depends=[BH dbarts Matrix Rcpp RcppEigen RcppParallel]; }; standardize = derive2 { name="standardize"; version="0.2.2"; sha256="008nz9vf08qxwdsn373yzpmsw5lhbm6mpm6dlwyys58wq0bdvh28"; depends=[lme4 MASS stringr]; }; standartox = derive2 { name="standartox"; version="0.0.1"; sha256="1b5w66x4v8hfxzp3ahw97my6m0rcn22iv5nhgm2wzdq0if0cq8py"; depends=[curl data_table fst httr jsonlite]; }; stanette = derive2 { name="stanette"; version="2.21.2"; sha256="1266555964cymrgrmfzjk2x12hpyjvd18c8q0lx92wdssnqzhhzr"; depends=[BH brew coda ggplot2 gridExtra inline lattice loo pkgbuild Rcpp RcppEigen RcppParallel StanHeaders V8 withr]; }; @@ -16771,17 +16849,17 @@ in with self; { starm = derive2 { name="starm"; version="0.1.0"; sha256="0y580c6inmfix6agwd5nr340l3hjk2xxs95s468j5pghpjpb8rmv"; depends=[Matrix]; }; starma = derive2 { name="starma"; version="1.3"; sha256="07r0kyabhgbm2v39fcrw0qhxcxj9a9cb45g9chzcnn9qmvramcwx"; depends=[ggplot2 Rcpp RcppArmadillo scales]; }; starnet = derive2 { name="starnet"; version="0.0.6"; sha256="0gbg8svyj4nh846q7986ap7jjry599kb1348k9lifz19kvyr4rn4"; depends=[cornet glmnet Matrix survival]; }; - stars = derive2 { name="stars"; version="0.5-3"; sha256="00cljaz98iy3wymabp7b47qgxdybg9jgjkw7q6da1ginmy14m524"; depends=[abind classInt lwgeom rlang sf units]; }; - starsExtra = derive2 { name="starsExtra"; version="0.2.6"; sha256="0z64alwx1m4cfjbgymqd61j5rx0b52bs9d7qhng7kplbnws8hn3j"; depends=[mgcv nngeo sf stars units]; }; + stars = derive2 { name="stars"; version="0.5-4"; sha256="1h5fway2fk637mkglw0h3ajiyyx8saqcapg42xzsiwbk8lnaf9f4"; depends=[abind classInt lwgeom rlang sf units]; }; + starsExtra = derive2 { name="starsExtra"; version="0.2.7"; sha256="06l9rpgw1dmvvn3389zzqrq4y87192k4zzj7xgvwzrdlrcxsqdh7"; depends=[mgcv nngeo sf stars units]; }; starschemar = derive2 { name="starschemar"; version="1.2.0"; sha256="0jjaic1zwdc3lvdlgs0vzkjjivjs2dskmhx4qg469ban34az0591"; depends=[dplyr generics pander purrr readr rlang snakecase tibble tidyr tidyselect]; }; startR = derive2 { name="startR"; version="2.1.0"; sha256="1cgn77jaiy7gfqbhh6w3x0bf57v32vzpp334mp50v827hgv439wy"; depends=[abind bigmemory ClimProjDiags easyNCDF future multiApply s2dverification]; }; - starter = derive2 { name="starter"; version="0.1.6"; sha256="1f7vmbiynaflbjd1pr8g1zmgxlkgyi1hb33xbah503qrz5iclfpf"; depends=[dplyr fs gert glue here purrr R_utils readr renv rlang stringr tibble usethis]; }; - startup = derive2 { name="startup"; version="0.15.0"; sha256="05a5drjzmc969yn5y62gy1ja469nqrcbicycvjmlgrrfcj7918mi"; depends=[]; }; + starter = derive2 { name="starter"; version="0.1.8"; sha256="003ih4035hhka5cghr5j3h0gc9a2fxdafag8ffxxg8cvigh2m7fm"; depends=[dplyr fs gert glue here purrr R_utils readr renv rlang stringr tibble usethis]; }; + startup = derive2 { name="startup"; version="0.16.0"; sha256="1lqjig4jvy71w7082b5s209kmkchn39n0fksnvjp1prjvygh575w"; depends=[]; }; startupmsg = derive2 { name="startupmsg"; version="0.9.6"; sha256="0vkqxir4ady4dn9s70dfg1fxck2xg8vnmrmxjzvk01i6pc9zyq0x"; depends=[]; }; starvars = derive2 { name="starvars"; version="1.1.9"; sha256="0h4swxkvcif79258jimrzy4lk370ad6f0w9npjhya6pbjii40j3l"; depends=[doSNOW foreach ks lessR MASS matrixcalc optimParallel quantmod vars xts zoo]; }; starvz = derive2 { name="starvz"; version="0.7.0"; sha256="166mppribk0hsx4rs3km0k44s7yww6ss5bmxn4434caj43rda5lr"; depends=[arrow BH data_tree dplyr ggplot2 gtools lpSolve magrittr patchwork purrr RColorBrewer Rcpp readr rlang stringr tibble tidyr yaml zoo]; }; starwarsdb = derive2 { name="starwarsdb"; version="0.1.2"; sha256="00n9qqw4lbfk698qgvw8i42sy3dv5i5fiiqma3zks4rr9yspkldq"; depends=[DBI duckdb magrittr tibble]; }; - stat_extend = derive2 { name="stat.extend"; version="0.1.4"; sha256="1m3bjwgb0g0c445xy9b29yibnf8ldjfnyd0i519dxnh31b6k8vy9"; depends=[sets]; }; + stat_extend = derive2 { name="stat.extend"; version="0.2.1"; sha256="1qwjqnjds733xvxhby604yqvwlj1rkr3411diwzhbgwp89rhy11r"; depends=[sets]; }; statGraph = derive2 { name="statGraph"; version="0.5.0"; sha256="0fd7jsngd8gihivnir3y58961kvbdd5g1m5gm1da91984qs7r9q1"; depends=[cluster doParallel foreach igraph MASS rARPACK]; }; statVisual = derive2 { name="statVisual"; version="1.2.1"; sha256="1cc9p9g8lzn0lgh793r977yhqbk89l74m443gnznjlfml69bfb21"; depends=[Biobase dplyr factoextra forestplot gbm GGally ggdendro ggfortify ggplot2 ggrepel glmnet gridExtra knitr limma magrittr pheatmap pROC pvca randomForest RColorBrewer reshape2 rmarkdown rpart_plot tibble tidyverse]; }; statar = derive2 { name="statar"; version="0.7.3"; sha256="17zg1g0ndsysrqj0alpx0sgmc69d3jkqr543l8m758mnm9bw83c9"; depends=[data_table dplyr ggplot2 lazyeval matrixStats rlang stringr tidyselect]; }; @@ -16854,18 +16932,18 @@ in with self; { stocc = derive2 { name="stocc"; version="1.31"; sha256="0d0n9nrcva0vradippq30y6dc6klwd1mllnzpnzq9rczpz5cw7mw"; depends=[coda fields Matrix rARPACK truncnorm]; }; stochQN = derive2 { name="stochQN"; version="0.1.2-1"; sha256="1lfzivl745dj94kap103arz0zy75wk69kc6v84xaaxk7ad3icnaj"; depends=[]; }; stochprofML = derive2 { name="stochprofML"; version="2.0.3"; sha256="0j6m2byh7w9kcbp3mfvmg6fm6z0dq8k4qabj1yfkl0d1y2ifd1zd"; depends=[MASS numDeriv]; }; - stochvol = derive2 { name="stochvol"; version="3.1.0"; sha256="04ds1knjdy39is7wyqhcncpmyr1bd45l7g3wrz8hll3bzap5c8wj"; depends=[coda Rcpp RcppArmadillo]; }; + stochvol = derive2 { name="stochvol"; version="3.2.0"; sha256="1ix8x3gmm5advdxk0rd0p26x3487qmw6pv4mi628vjqpmvnv42fr"; depends=[coda Rcpp RcppArmadillo]; }; stochvolTMB = derive2 { name="stochvolTMB"; version="0.2.0"; sha256="07m3qz8j1sw37lrxzmbkbifd3nsdvd2blbca8vr1aq5bbafr1g1b"; depends=[data_table ggplot2 MASS RcppEigen sn TMB]; }; stockR = derive2 { name="stockR"; version="1.0.74"; sha256="002i0bhyskwyjjczfa752ghn19hvqhdyzdfkpvci3hb66rh94x65"; depends=[gtools RColorBrewer]; }; stockfish = derive2 { name="stockfish"; version="0.1.3"; sha256="0f98xi81kjahvqhmq7hjbrg54kdff5j4q2dq8wj41l13pzi81sac"; depends=[processx R6]; }; stocks = derive2 { name="stocks"; version="1.1.4"; sha256="0b6rl7pfkgzbpwnv7zzkr36hs5f1zb60d16ijslf7g9m25vvcyg6"; depends=[dvmisc Hmisc lubridate quantmod rbenchmark RColorBrewer Rcpp TTR zoo]; }; stoichcalc = derive2 { name="stoichcalc"; version="1.1-3"; sha256="0z9fnapibfp070jxg27k74fdxpgszl07xiqfj448dkydpg8ydkrb"; depends=[]; }; - stokes = derive2 { name="stokes"; version="1.0-8"; sha256="0hdw7yyakbn78prxyydv09j2k3xj2fwy0v2nxw3n7mm2qgkjggg9"; depends=[magrittr mathjaxr partitions permutations spray]; }; + stokes = derive2 { name="stokes"; version="1.0-9"; sha256="1hs57fz52zrpmjminsqpxs3bnmgn8fr3mkca9zmh2017ypk7zc1p"; depends=[disordR magrittr mathjaxr partitions permutations spray]; }; stopwords = derive2 { name="stopwords"; version="2.3"; sha256="1ci1cgxrcvlhhplximsfv0plvjdbcd5kv0nphxnpildsn5m1rv65"; depends=[ISOcodes]; }; storr = derive2 { name="storr"; version="1.2.5"; sha256="0qszdq16bf0dbss33zi63ciwmkgjsyc0c3akrr2kl14w3ncw6922"; depends=[digest R6]; }; storywranglr = derive2 { name="storywranglr"; version="0.2.0"; sha256="07w3dwv2naqbbdzjcv58cisj7cv1rbhrk96a30q8ww11rf953rj4"; depends=[dplyr httr jsonlite tibble urltools]; }; stosim = derive2 { name="stosim"; version="0.0.14"; sha256="10k8j7manskjsrjc1l44yhy682b1qh0k2jx3cs5k69j2z42mnhmk"; depends=[Rcpp]; }; - stplanr = derive2 { name="stplanr"; version="0.8.5"; sha256="13m6giaz43qgq9gwk3mywzjkhwbmwxsw2sbbl46kvzmxn2pbdmml"; depends=[curl data_table dplyr geosphere httr igraph jsonlite lwgeom magrittr maptools nabor pbapply raster Rcpp RcppArmadillo rgeos rlang sf sfheaders sp stringr]; }; + stplanr = derive2 { name="stplanr"; version="0.8.6"; sha256="08kxbblp6zb99v303j1m6ijr378m6jj3sfqnlj30ysb9ppy2fdmk"; depends=[curl data_table dplyr geosphere httr jsonlite lwgeom magrittr maptools nabor pbapply raster Rcpp RcppArmadillo rgeos rlang sf sfheaders sp stringr]; }; stpm = derive2 { name="stpm"; version="1.7.10"; sha256="0y9rpqjn33gdqjvag4kb6dr00w80paspgj9ic25brclfv1zmzbhf"; depends=[MASS nloptr Rcpp RcppArmadillo sas7bdat survival]; }; stpp = derive2 { name="stpp"; version="2.0-5"; sha256="1p7dxzfhi5pvva956nyypl7dfdgq3m0cara73hai87qzc342xcf0"; depends=[ggplot2 gridExtra KernSmooth plot3D rgl rpanel spatstat_core spatstat_geom splancs]; }; str2str = derive2 { name="str2str"; version="0.2.1"; sha256="180m261hr0qr3mnm8hbvjbw3q44cr1kfrnq97fvkpypigdycd9z4"; depends=[abind checkmate plyr reshape]; }; @@ -16891,12 +16969,12 @@ in with self; { stressr = derive2 { name="stressr"; version="1.0.0"; sha256="00b93gfh1jd5r7i3dhsfqjidrczf693kyqlsa1krdndg8f0jkyj7"; depends=[lattice latticeExtra XML xts]; }; strex = derive2 { name="strex"; version="1.4.2"; sha256="1m9dr5rv3s33kg2b2lr5lxsmbf6qs0nypxw2yx2hyzhsgq363mbn"; depends=[checkmate magrittr rlang stringi stringr]; }; strider = derive2 { name="strider"; version="1.3"; sha256="114j0qpdyg8rrhj68zq596pgc4h7ja39n0rfxf0x9qg7imhaj1h6"; depends=[BH Rcpp]; }; - string2path = derive2 { name="string2path"; version="0.0.3"; sha256="0pdz33l8jnpcvw9r80f4hkq6ncv800bv2li3aa71jh4ppplm28xv"; depends=[tibble]; }; + string2path = derive2 { name="string2path"; version="0.0.4"; sha256="1vxrl60ld7iy9fhy4jz954n9ywq6g0glm2wci9262c827jwd8pyb"; depends=[tibble]; }; stringb = derive2 { name="stringb"; version="0.1.17"; sha256="0bfwwbg64nzxrx30cndqvdlhanjkx6875lg5dzm9cbwvwg2wbxcn"; depends=[backports]; }; stringdist = derive2 { name="stringdist"; version="0.9.8"; sha256="1fv1hbdlm8qwx57b2aj50mw0say5k48awzavx65mfk67qp6ddk7g"; depends=[]; }; stringfish = derive2 { name="stringfish"; version="0.15.4"; sha256="1n67y9vgv8vb8qd091d1wm5sgbalcm2avh2fz0hd3mmglpkr83wf"; depends=[Rcpp RcppParallel]; }; stringformattr = derive2 { name="stringformattr"; version="0.1.2"; sha256="0x56k30clj5ajk0qg5sr8b9l0asz6ldivwr1ddy1vp1djliih1fx"; depends=[stringr]; }; - stringi = derive2 { name="stringi"; version="1.7.5"; sha256="0r959gzyqkq9683qdfy95g9plwpj3c73n9lhf0a6byybw4scq519"; depends=[]; }; + stringi = derive2 { name="stringi"; version="1.7.6"; sha256="1v0rj5svgvn1mlf69yzm6jm00fxmrsxazs9xymzrf0apxjpxb8qf"; depends=[]; }; stringr = derive2 { name="stringr"; version="1.4.0"; sha256="1p9ip7p87gbbg4s6d3d392svvzz2b5dqdq2c8ilgvn4s78nlsq47"; depends=[glue magrittr stringi]; }; stringx = derive2 { name="stringx"; version="0.2.2"; sha256="166n7npbm60rxffrgvdhdr3l08mdnbk6hyx7srwrjhsxbcgmb5l1"; depends=[stringi]; }; strip = derive2 { name="strip"; version="1.0.0"; sha256="1j3kq6w8k66z45rpd1cgxplpnldzbyqklgs4bnbv906pyd8wk9ak"; depends=[rlist]; }; @@ -16904,7 +16982,7 @@ in with self; { striprtf = derive2 { name="striprtf"; version="0.5.3"; sha256="0dqcsh3fb8j0mmmxvxjl77rryhmrjm7a3scqvk2xkgxk4xq6q316"; depends=[magrittr Rcpp stringr]; }; strm = derive2 { name="strm"; version="0.1.2"; sha256="09x5h4zgbdqq88xabi7hw506y5jrd26br0233afd46m7c69ayadn"; depends=[dplyr knitr magrittr purrr rgdal rlang rmarkdown spatialreg testthat tidyr]; }; strucchange = derive2 { name="strucchange"; version="1.5-2"; sha256="1y022363a4pp0mnji91sjh1qiyspkh09sybqwj03r9pmwrd7q93x"; depends=[sandwich zoo]; }; - strucchangeRcpp = derive2 { name="strucchangeRcpp"; version="1.5-3-1.0.3"; sha256="14yim9bbyj1cz2gv9kwwm2rsdm2x64jr68fjjidxgb8ywz2vcl4k"; depends=[Rcpp RcppArmadillo sandwich zoo]; }; + strucchangeRcpp = derive2 { name="strucchangeRcpp"; version="1.5-3-1.0.4"; sha256="0vfqbhck0qwc8dsnm5ggc0if03vx4ma53qidi7qsqjyfjfszq1pm"; depends=[Rcpp RcppArmadillo sandwich zoo]; }; structree = derive2 { name="structree"; version="1.1.7"; sha256="178x6maghjaw9lkyjr84pq916vbq0ldh5gqia0r0vqs8k8dvna9i"; depends=[lme4 mgcv penalized]; }; strvalidator = derive2 { name="strvalidator"; version="2.3.0"; sha256="0m1nxpvb7hbx9n00mc0ar7ay1sk8h819cmf0r0g323z23axq1kdx"; depends=[data_table ggplot2 gridExtra gtable gWidgets2 MASS plyr scales]; }; stsm = derive2 { name="stsm"; version="1.9"; sha256="18ypmkd7l7m7qkahb0nqf8f1m8g4irxlw48v2ms0dq1bsnhbzx7j"; depends=[KFKSDS]; }; @@ -16931,7 +17009,6 @@ in with self; { subscreen = derive2 { name="subscreen"; version="3.0.5"; sha256="0786p2n1a4xjsxnd31w2b079ggdzx9pgn14d5vbngrc6mgjm9hk8"; depends=[bsplus colourpicker data_table dplyr DT jsonlite plyr purrr randomForestSRC shiny shinyjs shinyWidgets]; }; subselect = derive2 { name="subselect"; version="0.15.2"; sha256="0ggpm5bq4ncx4302855s8x1nj0afjizmi81cg6b7xc7rvpirw0fq"; depends=[corpcor ISwR MASS]; }; subspace = derive2 { name="subspace"; version="1.0.4"; sha256="0p2j0lnwj3ym1v4xla6r97zjikb8alnibdc690xn9c0z21hmv43v"; depends=[colorspace ggvis rJava stringr]; }; - subtee = derive2 { name="subtee"; version="1.0.0"; sha256="09ah1n3whdycygbi1a6pwgm5jqs1srd565p3ihkk5ygp4gl2r3z9"; depends=[ggplot2 MASS matrixStats survival]; }; subtype = derive2 { name="subtype"; version="1.0"; sha256="1094q46j0njkkqv09slliclp3jf8hkg4147hmisggy433xwd19xh"; depends=[penalized ROCR]; }; sudachir = derive2 { name="sudachir"; version="0.1.0"; sha256="09ry00c3yhrz8fiyxdxgj9r3x7kldsl6fv35mmi5ysc2549kbcfb"; depends=[cli dplyr glue magrittr purrr reticulate rlang tibble tidyselect]; }; suddengains = derive2 { name="suddengains"; version="0.4.4"; sha256="160jna9imnpy91f6pa881w6wlrwy59db0nijrn1sf5ym1cmh5gz5"; depends=[dplyr forcats ggplot2 ggrepel magrittr naniar patchwork psych readr rlang scales stringr tibble tidyr]; }; @@ -16940,6 +17017,7 @@ in with self; { sugarbag = derive2 { name="sugarbag"; version="0.1.3"; sha256="05j2b9vbhpkfr3xkam9wgm0w4k8blnm1ssf9cd6l5f1y2rrqizsv"; depends=[dplyr geosphere lwgeom progress purrr rlang rmapshaper sf tibble tidyr utf8]; }; sugrrants = derive2 { name="sugrrants"; version="0.2.8"; sha256="08cs74afpkvjh32hlrwbl8sdsi3p0ga4ziw32r9pihs28a060fam"; depends=[dplyr ggplot2 gtable lubridate rlang]; }; sumFREGAT = derive2 { name="sumFREGAT"; version="1.2.2"; sha256="1phffgscn76xm759jz2fpx82czp91i7q261f6fxlj79kb164njk0"; depends=[GBJ Matrix seqminer]; }; + sumSome = derive2 { name="sumSome"; version="1.1.0"; sha256="1a70kxvp9d9hn38jnvgk934vwbz4bjb6k4kcngp6rp9gv9h2bh2r"; depends=[ARIbrain pARI Rcpp RNifti]; }; summariser = derive2 { name="summariser"; version="2.3.0"; sha256="0zliqy8dlcr2yy4ky8k68qn256xvpla8fcv7via19y40bmla37ic"; depends=[dplyr]; }; summarytools = derive2 { name="summarytools"; version="1.0.0"; sha256="04qcysfywljnqkcz2b7kzpy0xv3ykkvvb14vnda63z1wvmadyhkn"; depends=[base64enc checkmate dplyr htmltools lubridate magick matrixStats pander pryr rapportools tibble tidyr]; }; sunburstR = derive2 { name="sunburstR"; version="2.1.6"; sha256="1a8a6scfmr74qfi86nrpli6abhfri60cd6sdb40ywrh9qpshkl81"; depends=[d3r dplyr htmltools htmlwidgets]; }; @@ -16957,10 +17035,10 @@ in with self; { supernova = derive2 { name="supernova"; version="2.4.4"; sha256="122srb8mbpgywcl8ggv33dlpl64489r3r3mcsrpvly29c2i7qx4f"; depends=[backports cli ggplot2 magrittr pillar purrr rlang stringr tibble vctrs]; }; superpc = derive2 { name="superpc"; version="1.12"; sha256="0n68qafsww00q0wx37ms3rimrlhbp085ywvv2k5vw951j4z8ivfb"; depends=[survival]; }; supervisedPRIM = derive2 { name="supervisedPRIM"; version="2.0.0"; sha256="1j5gsy119pvrhkkg048lyk6hjvn9x1bhmfy5g824gj3k1w5slrib"; depends=[prim]; }; - suppdata = derive2 { name="suppdata"; version="1.1-7"; sha256="1kga3jczxa9wjazl7gcks2p521y7c2y1518v7wk48sm7yri6sm4p"; depends=[httr jsonlite rcrossref xml2]; }; + suppdata = derive2 { name="suppdata"; version="1.1-8"; sha256="0npbr1zvn30vh6qccyxld2xzdflh6armj6d807d9qbkjqd81kkyn"; depends=[httr jsonlite rcrossref xml2]; }; support = derive2 { name="support"; version="0.1.5"; sha256="0gs6mva1lwanq4rm8l70sid28if2l0k249ydirqkz72lz12hg1br"; depends=[BH MHadaptive nloptr randtoolbox Rcpp RcppArmadillo]; }; support_BWS = derive2 { name="support.BWS"; version="0.4-4"; sha256="0w4d4hiv46bsj9hl600y0n8n54cisagnim6ym2g8yipbvvsfqxlh"; depends=[]; }; - support_BWS2 = derive2 { name="support.BWS2"; version="0.3-0"; sha256="0k9yvg0n4lzsq43r53r9f70hq1q3zfljjafj9ds2p3c6qzgs9chi"; depends=[]; }; + support_BWS2 = derive2 { name="support.BWS2"; version="0.3-1"; sha256="15m4aim384ivrw53qhglv782c6bcp1sfh1i94d9i308q4iqaaa2v"; depends=[]; }; support_BWS3 = derive2 { name="support.BWS3"; version="0.2-0"; sha256="012kcvscz7m2is92r71731zc7xnp7pwyx30vivwjazrigp9bq1kl"; depends=[]; }; support_CEs = derive2 { name="support.CEs"; version="0.5-0"; sha256="194vnld2rg5qcp6vmcx259icj7gl1kyrivh8v8hygy9fy6dp16wc"; depends=[DoE_base MASS simex]; }; supportInt = derive2 { name="supportInt"; version="1.1"; sha256="14fh75sds05c06xkcfbijd8my3sa9kpnczzh96xx0gwj1193yya9"; depends=[ProfileLikelihood]; }; @@ -17007,13 +17085,14 @@ in with self; { surveysd = derive2 { name="surveysd"; version="1.3.0"; sha256="0d5xjdlccqaa1h437rz5zq6a829rpz426m55jgprhfpcps1wfhbk"; depends=[data_table ggplot2 laeken Rcpp]; }; survidm = derive2 { name="survidm"; version="1.3.2"; sha256="0ass7ffpk70ph7dcdjm2f6xyzqaavlkhr1pcij2vcasiy4v1vyiv"; depends=[doParallel doRNG foreach ggplot2 gridExtra KernSmooth np plotly Rcpp survival TPmsm]; }; survival = derive2 { name="survival"; version="3.2-13"; sha256="0zrikancm9shixvgng89f1610sphlwljczi0fnjbdqn4l85rrarz"; depends=[Matrix]; }; + survival666 = derive2 { name="survival666"; version="0.5"; sha256="11vs546lrbxnhpxjmwxhh2hnp6kwcf4hzgigi3x9525hr8n9cy01"; depends=[ggplot2 survival survminer]; }; survivalAnalysis = derive2 { name="survivalAnalysis"; version="0.2.0"; sha256="1sx7xjqkwc3788j0520kgv602m3gdlmpg1ps9fm8lhsjb8dmvlya"; depends=[cowplot dplyr forcats ggplot2 gridExtra magrittr purrr rlang scales stringr survival survminer tibble tidyr tidytidbits]; }; - survivalMPL = derive2 { name="survivalMPL"; version="0.2"; sha256="05bfa9fx841kh9g2jcs1dimsxkjnf4bxgamcnjpisx3a644c1gkn"; depends=[MASS survival]; }; + survivalMPL = derive2 { name="survivalMPL"; version="0.2-1"; sha256="1rskhawhpkzi3laq452kgr1740p6998z7c7p95f2023ymkdm4rxv"; depends=[MASS survival]; }; survivalMPLdc = derive2 { name="survivalMPLdc"; version="0.1.1"; sha256="1wqlzpwm1p7nq19l3d7c93zv6fnn0b1w24kak9zwsgyhar3f5lv9"; depends=[copula matrixcalc splines2 survival]; }; survivalROC = derive2 { name="survivalROC"; version="1.0.3"; sha256="0wnd65ff5w679hxa1zrpfrx9qg47q21pjxppsga6m3h4iq1yfj8l"; depends=[]; }; survivalmodels = derive2 { name="survivalmodels"; version="0.1.9"; sha256="13plpgvxlljd953kv0krzzs1rfgl4yv9s7s5naplqfzjrapk0j7z"; depends=[Rcpp]; }; survivalsvm = derive2 { name="survivalsvm"; version="0.0.5"; sha256="1b4hrdrqq1z0kfn8vpdwg54388m25df2s6w9i574x3mkxkmkjkga"; depends=[Hmisc kernlab Matrix pracma quadprog survival]; }; - survivoR = derive2 { name="survivoR"; version="0.9.4"; sha256="1swvlxsj4msa82c6cnfx0g5w6c3b592czc14c4barx028qj40sph"; depends=[dplyr ggplot2 magrittr stringr tidyr]; }; + survivoR = derive2 { name="survivoR"; version="0.9.6"; sha256="1knrcp6f1gxad4s9l1zfak805ixsgxvs6d30awv5x34jny1cgj8a"; depends=[dplyr ggplot2 magrittr stringr tidyr]; }; survminer = derive2 { name="survminer"; version="0.4.9"; sha256="0byh0wxdbjfwdrzsnqv4xlmnik6lj0vkkzfxy7lssk8dv5zmj7nz"; depends=[broom dplyr ggplot2 ggpubr ggtext gridExtra magrittr maxstat purrr rlang scales survival survMisc tibble tidyr]; }; survmixer = derive2 { name="survmixer"; version="1.3"; sha256="00s06h7nn8li4d2kn4yzlnj3px1wkpvnx5w73y98cvrcwm0ad71g"; depends=[]; }; survsim = derive2 { name="survsim"; version="1.1.7"; sha256="1873m3lhrmy36fbg3rdnkvqmgyxbf07vb3p54p8xnggyllf94q5b"; depends=[eha statmod]; }; @@ -17056,6 +17135,7 @@ in with self; { swatches = derive2 { name="swatches"; version="0.5.0"; sha256="1kivscgka8gn44rjj0s5sjan1s04znnyn0nd37a74zaik0hm8zs0"; depends=[colorspace httr pack stringr xml2]; }; swdft = derive2 { name="swdft"; version="1.0.0"; sha256="0529rw8nsl48hwiy741alvrzg5d5q1nhnjshrsfwchm5kdv0igva"; depends=[]; }; swdpwr = derive2 { name="swdpwr"; version="1.6"; sha256="0gyys5lv8zp6n8ywlnqnzpnmpply32ghhwiwi6rilin08nbd0wm8"; depends=[spatstat_core]; }; + sweater = derive2 { name="sweater"; version="0.1.2"; sha256="0sfyz77i50gs2kndd6zq08l1qji1d4jbnsp6jqj5jv5sazcw1vwn"; depends=[data_table LiblineaR proxy purrr quanteda Rcpp]; }; sweep = derive2 { name="sweep"; version="0.2.3"; sha256="1705mcp9p5h50ifqjjwx61z5wl5izv889nxcgdkx1i0dlcr61l2a"; depends=[broom dplyr forecast lubridate rlang tibble tidyr timetk]; }; sweidnumbr = derive2 { name="sweidnumbr"; version="1.4.2"; sha256="0zzjvwd60w9b5ybsb72aqa42sx6al4ymr591j3zryxgpl6rms5rh"; depends=[checkmate lubridate stringr]; }; swephR = derive2 { name="swephR"; version="0.3.0"; sha256="0fk5wih3i5vpkcc9y1n30xwc1hyqgfgnad9jkdgdx0m31pn1y9j5"; depends=[Rcpp]; }; @@ -17087,7 +17167,7 @@ in with self; { symSEM = derive2 { name="symSEM"; version="0.1"; sha256="084c47fkpgxjafx856d9xjijjz4l1da76bdqq63fvmhhiz17q8gs"; depends=[metaSEM mvtnorm OpenMx Ryacas]; }; symbolicDA = derive2 { name="symbolicDA"; version="0.6-2"; sha256="0fd36dndzs0n0xwz38px5182gc6ng174n433rgch1s1g6bh8dn4s"; depends=[ade4 cluster clusterSim e1071 rgl RSDA shapes XML]; }; symbols = derive2 { name="symbols"; version="1.1"; sha256="1234rx3divhg60p0h0zn11viqn51fm6b8876m6rip2i6z8vrg319"; depends=[shape]; }; - symengine = derive2 { name="symengine"; version="0.1.5"; sha256="1n8gxazjfjfas8463qa00zs6ww1vzv059d9aakvh1pads24l8v6l"; depends=[Rcpp]; }; + symengine = derive2 { name="symengine"; version="0.1.6"; sha256="10d4v3whfbwd8a4bf24jyf8lndcafpwdh8gwynf8wscjfc0c7zi2"; depends=[Rcpp]; }; symmetry = derive2 { name="symmetry"; version="0.2.1"; sha256="041vxbva5kaywpn4y7kjwlc2cj56iyvd51iv5198dv280jfcnjv9"; depends=[Rcpp RcppArmadillo Rdpack]; }; symmoments = derive2 { name="symmoments"; version="1.2.1"; sha256="0wl68nsvydfhlbyaj54alj31dphqigyp1s4h2xdapxj4zvwf2sws"; depends=[combinat cubature multipol mvtnorm]; }; symphony = derive2 { name="symphony"; version="0.1.0"; sha256="0pwl9ahiv0xxc7j6448cja77fvcng28gdwhhr1z0qmhjsdcxadxq"; depends=[class data_table dplyr ggplot2 ggrastr ggrepel harmony irlba magrittr Matrix purrr RANN RColorBrewer Rcpp RcppArmadillo rlang tibble tidyr uwot]; }; @@ -17098,11 +17178,12 @@ in with self; { synfd = derive2 { name="synfd"; version="0.1.3"; sha256="1h8vfrfw00449vjbj6z4y7m5p7rxzvqjcykyxw5sb473f63gr5px"; depends=[L1pack Rdpack]; }; synlik = derive2 { name="synlik"; version="0.1.4"; sha256="009kw0cx49jvm9giw2hp8lv72rf69q7h5d4gjigp2bsx309yfzcs"; depends=[Matrix Rcpp RcppArmadillo]; }; synoptReg = derive2 { name="synoptReg"; version="1.2.1"; sha256="1v282ag4275p5lm6yvzwkpndrf4cnrpn0rw3v6mh5hxnb2pbmjl5"; depends=[dplyr ggplot2 kohonen lubridate magrittr metR raster rnaturalearth rnaturalearthdata RNCEP sf stringr tibble tidyr]; }; + synr = derive2 { name="synr"; version="0.5.1"; sha256="1x7357p2hgqqfcqxbhdc1c34a0axy9iwrlfcdqbnj8cj4b9dnwpa"; depends=[data_table dbscan ggplot2]; }; syntaxr = derive2 { name="syntaxr"; version="0.8.0"; sha256="1iik9b3x9jx7w31j7hyi3sixg30l5a6w40svhqj1xlchsk60yykn"; depends=[magrittr]; }; synthACS = derive2 { name="synthACS"; version="1.6.0"; sha256="0dwcx2c284fa9d0y7kpai3jpby3drriw9bxbjld8v6lz7af6d9mw"; depends=[acs data_table Rcpp]; }; - synthesis = derive2 { name="synthesis"; version="1.2.2"; sha256="0kkhib5s7ibj22zwlhr95gazvinrrhnddbkdg9d1k9y9zxm8df6j"; depends=[MASS]; }; + synthesis = derive2 { name="synthesis"; version="1.2.3"; sha256="0nhnpqhs1h7iz49h852ns8pgmcl8via506idyp19dp778wbmxkn1"; depends=[MASS]; }; synthesisr = derive2 { name="synthesisr"; version="0.3.0"; sha256="0b50d5hfkscggn2f6h8wyljkar08r8cbc0a4l12f809w5hdnjc63"; depends=[stringdist]; }; - synthpop = derive2 { name="synthpop"; version="1.6-0"; sha256="0yknpisl81r87afijnjz5za0j6nn135mhrbpa9dva3c0dzamnhms"; depends=[classInt foreign ggplot2 lattice MASS mipfp nnet party plyr polspline proto randomForest ranger rpart]; }; + synthpop = derive2 { name="synthpop"; version="1.7-0"; sha256="17f2fc4l5733zqrmxvwq9yklraxxxp37810fsnj9lb8sq4cl70rn"; depends=[classInt foreign ggplot2 lattice MASS mipfp nnet party plyr polspline proto randomForest ranger rpart stringr survival]; }; sys = derive2 { name="sys"; version="3.4"; sha256="11q4zmx62w44p1j34frwmrsp23mc7l4n354i0zyziw92yax8zy0p"; depends=[]; }; sysfonts = derive2 { name="sysfonts"; version="0.8.5"; sha256="1fhf0x5sqx3mv72j9d0clkq1qzqiqxbxn1h808f7ccf0mb04v43y"; depends=[]; }; sysid = derive2 { name="sysid"; version="1.0.4"; sha256="0fr9gf5yjin3zvz850z4r4pqc1r4mwx8d46sl64i4csdm9qnqagy"; depends=[bitops ggplot2 polynom reshape2 signal tframe zoo]; }; @@ -17118,6 +17199,7 @@ in with self; { tTOlr = derive2 { name="tTOlr"; version="0.2"; sha256="1fk33vp6y65mls1iczjf63wzj1rl1knbdcbd4rnqqfdcqhibb3p3"; depends=[lattice latticeExtra]; }; taRifx = derive2 { name="taRifx"; version="1.0.6.2"; sha256="05cvjsi65fvy9hg2v3fldzwn1yd2kfirl3ffg9yfajm903dk3l49"; depends=[plyr reshape2]; }; tab = derive2 { name="tab"; version="5.1.1"; sha256="1kg8c1safi9klkx2mdkmsf5dn9piy4jljwd4ma7g4jz2rwl4jzhv"; depends=[dplyr kableExtra knitr MASS survey]; }; + tabbycat = derive2 { name="tabbycat"; version="0.17.0"; sha256="1q18vnk4jyql46vjj6bhn2sa65yswg1hw8mbrwv7602dfk09p74x"; depends=[dplyr janitor magrittr purrr rlang stringr tibble tidyr]; }; taber = derive2 { name="taber"; version="0.1.2"; sha256="0cib8fsib4q8nf18vcpailvkplf57cm8fshb09clxm3zcp8j9c17"; depends=[dplyr magrittr]; }; tabit = derive2 { name="tabit"; version="0.2.1"; sha256="0jy95jpbzj4rgaxmm6ki9wr0cl1w13pygq3yavdccjr82mayfpvc"; depends=[]; }; tablaxlsx = derive2 { name="tablaxlsx"; version="1.2.4"; sha256="19yg8m264f1hjsi8b7zxjpbvlaz2jrxj2bd9nv95g52dvlysg4nk"; depends=[openxlsx]; }; @@ -17175,6 +17257,7 @@ in with self; { taxlist = derive2 { name="taxlist"; version="0.2.2"; sha256="0xdl7aw3ifn4v2wclk38iyayy9r71cx5diir1m4pws986qfdddb4"; depends=[foreign stringdist taxa taxize vegdata]; }; taxonomizr = derive2 { name="taxonomizr"; version="0.8.0"; sha256="0i1xn5x8c555hdlnfbhpga4vzn1l6kcqjgcw472y8yg0n7s2birx"; depends=[curl data_table R_utils RSQLite]; }; taxotools = derive2 { name="taxotools"; version="0.0.79"; sha256="1q69dh1ifa7mc8y3bdgvvg97s9prflh6mczqr4clxnsysd3xhafs"; depends=[plyr sqldf stringdist stringr taxize wikitaxa]; }; + tayloRswift = derive2 { name="tayloRswift"; version="0.1.0"; sha256="1gr179hzqxih49v214dqawfhsbsahhyj1lbj77vqv00zq1siigpl"; depends=[]; }; taylor = derive2 { name="taylor"; version="0.2.1"; sha256="07agh34c1l1jgcqfq1p7fpfzd2sihsfs16xqc2m8yy4qpij929xm"; depends=[crayon ggplot2 glue rlang scales tibble vctrs]; }; tbart = derive2 { name="tbart"; version="1.0"; sha256="0m8l9ic7na70il6r9ha0pyrjwznbgjq7gk5xwa5k9px4ysws29k5"; depends=[Rcpp sp]; }; tbd = derive2 { name="tbd"; version="0.1.0"; sha256="1wmfy3p82gckhfsslxzapryfygmircii7x24j6ysfyx52gy8iwf5"; depends=[numDeriv]; }; @@ -17230,7 +17313,7 @@ in with self; { tergmLite = derive2 { name="tergmLite"; version="2.5.5"; sha256="0sg19ppvmy1wfqbvchn98maxiqzaa67yz64g4mhyxviksh1yzwxd"; depends=[ergm network networkDynamic Rcpp statnet_common tergm tibble]; }; term = derive2 { name="term"; version="0.3.3"; sha256="04zl9hb3kgji5y3lq7d1pa4fh7mr0kxxjx1pmyj3dla8mqjxv22r"; depends=[chk extras lifecycle purrr rlang universals vctrs]; }; ternvis = derive2 { name="ternvis"; version="1.2"; sha256="057i6i3ygxrin0npc18gsg3dpdldzafyb5sr6lix5mhy6b09lkxf"; depends=[dichromat maps quadprog]; }; - terra = derive2 { name="terra"; version="1.4-11"; sha256="08gx28ad00adz4fqch3fx27s6yd0rpjhmdy6b83d1wnlzzgc13qa"; depends=[Rcpp]; }; + terra = derive2 { name="terra"; version="1.4-22"; sha256="0xir5d6krf6n5dw9nzy04j4gnrfvyr5f545ksx474mv4cyiwzv5q"; depends=[Rcpp]; }; terrainmeshr = derive2 { name="terrainmeshr"; version="0.1.0"; sha256="1xab6wzq2izzdvsss1rlgp5m3cn45naxhymq6cglipj0fd792jbr"; depends=[Rcpp]; }; terrainr = derive2 { name="terrainr"; version="0.5.0"; sha256="0jams1b0a2bvm3l8kybfgvqgarm98kvhzh6n68mrh7xnk5hxgyjx"; depends=[base64enc gdalUtils ggplot2 httr magick png raster sf units]; }; tesseract = derive2 { name="tesseract"; version="4.1.2"; sha256="1x29i48khn679x8xf246br12aa3ax96sh5x8m2ya96kz6m7zchjh"; depends=[curl digest pdftools rappdirs Rcpp]; }; @@ -17248,6 +17331,7 @@ in with self; { testthis = derive2 { name="testthis"; version="1.1.1"; sha256="0csragn695698dpkr9d3md0g81bzpy5mybd0jik669q9cs8sdzh2"; depends=[assertthat devtools fs magrittr pkgload rprojroot stringi testthat usethis]; }; testtwice = derive2 { name="testtwice"; version="1.0.3"; sha256="06fr13ww2wqk753p0cnl1ldn3nqrvdfnz0lgkpldcn0xwiwjh2x2"; depends=[mvtnorm]; }; tetraclasse = derive2 { name="tetraclasse"; version="0.1.21"; sha256="1cl2cah0xi6x3rvvdy56iszai6rkbxc1w3x13v0l1z1nryff7c6a"; depends=[dplyr FactoMineR ggplot2 ggrepel magrittr reshape2 tibble tidyr]; }; + tetragon = derive2 { name="tetragon"; version="1.0.0"; sha256="17n6g262f19bvxh0i35xcpf9qbdzaff80vvmx8vsijjiniw2hrbq"; depends=[abind ggplot2 greybox imputeTS lubridate modeest moments narray philentropy purrr readr scales stringr tictoc]; }; texPreview = derive2 { name="texPreview"; version="1.5"; sha256="11njmn29qq50iff30in9i0yfi6ypnpqsx3317smr9fiw3hgda3c5"; depends=[base64enc details fs htmltools knitr lifecycle magick magrittr rematch2 rstudioapi svgPanZoom whisker xml2]; }; texmex = derive2 { name="texmex"; version="2.4.8"; sha256="115x7j2kvifzsrmh8zy6xymm1p01sxk4c26zdmi0p51bsgvs46ih"; depends=[ggplot2 mvtnorm Rcpp]; }; texreg = derive2 { name="texreg"; version="1.37.5"; sha256="0cb3kvxfi9k9g958fkb73cgqdxx3h9bz2cnaakic4wgrkv27mk2c"; depends=[httr]; }; @@ -17334,11 +17418,11 @@ in with self; { tidyBdE = derive2 { name="tidyBdE"; version="0.2.2"; sha256="041hwm73galrwjr4xnwzw5pzwp54g88w0464gmszrhs27lhhsr06"; depends=[dplyr ggplot2 readr scales tibble]; }; tidyCpp = derive2 { name="tidyCpp"; version="0.0.5"; sha256="1ad10m831k0askr15yv6drmjh7rlg0py1ib8zmpsgj57v5s9wx3p"; depends=[]; }; tidyHeatmap = derive2 { name="tidyHeatmap"; version="1.3.1"; sha256="107bfyjakqfiimnwdyl2nhvx1fjpzv693akvi5l0cai6vjs007wj"; depends=[circlize ComplexHeatmap dendextend dplyr lifecycle magrittr purrr RColorBrewer rlang tibble tidyr viridis]; }; - tidyLPA = derive2 { name="tidyLPA"; version="1.0.8"; sha256="0jrvd92q20kzz83lid9vvdh0l3l1kbc4m77cim261gzra1p7w5y0"; depends=[dplyr ggplot2 gtable mclust mix MplusAutomation tibble]; }; + tidyLPA = derive2 { name="tidyLPA"; version="1.1.0"; sha256="1lyd8cx90j49bm65330i57jyimiid75c2pvnzk7dcp6mbmglvimz"; depends=[dplyr ggplot2 gtable mclust mix MplusAutomation tibble]; }; tidyMicro = derive2 { name="tidyMicro"; version="1.47"; sha256="02pc6rh0l7xdrqhihi53zp17x0walc0mpm70spm7yrwzkbc486lv"; depends=[ade4 broom car cowplot dplyr Evomorph factoextra ggplot2 ggrepel gridExtra latex2exp lme4 lsr magrittr MASS Matrix plotly plyr png purrr rlang scales scatterplot3d shapes stringr ThreeWay tibble tidyr tidyverse vegan VGAM]; }; tidyREDCap = derive2 { name="tidyREDCap"; version="0.2.0"; sha256="03kx91avw6zbmrcxvhkb7i3syw3ajkv9ypvgn2iq3ki887vbiwzw"; depends=[dplyr janitor magrittr purrr rlang stringr tibble tidyr]; }; tidyRSS = derive2 { name="tidyRSS"; version="2.0.4"; sha256="0djkdjgs64f00pcs5gc8vmijyjsfb5sm0p64bybhs1y0kb3wlnl3"; depends=[anytime dplyr glue httr jsonlite magrittr purrr rlang tibble tidyselect vctrs xml2]; }; - tidySEM = derive2 { name="tidySEM"; version="0.1.10"; sha256="12i3d48z8y5r4v8pkswlnq9jng9065xy6aflnna5hl0jh93wa4rp"; depends=[ggplot2 igraph lavaan MplusAutomation OpenMx psych]; }; + tidySEM = derive2 { name="tidySEM"; version="0.2.0"; sha256="115nr2h3bz9pjxf5c1cw3b2v16nix5z41r49zjqzn8yrfjs59crw"; depends=[ggplot2 gtable igraph lavaan MplusAutomation OpenMx psych]; }; tidyUSDA = derive2 { name="tidyUSDA"; version="0.3.2"; sha256="092zy2k2hajr0g47r7ngsm089j4y70q7biwyhsiz3vfmpg3s3ijb"; depends=[crayon dplyr fuzzyjoin ggplot2 httr jsonlite magrittr purrr sf tigris]; }; tidybayes = derive2 { name="tidybayes"; version="3.0.1"; sha256="1drgjqcrcxx0jwaj9c0a5j0f6v793pq8rjcw8cv3zc438apfmdsm"; depends=[arrayhelpers coda dplyr ggdist ggplot2 magrittr posterior rlang tibble tidyr tidyselect vctrs withr]; }; tidybins = derive2 { name="tidybins"; version="0.1.0"; sha256="1kwwz0y1anlf1l8yl80xyiggdi8alsh0drb1529rijfk2jxlljg9"; depends=[badger ClusterR dplyr framecleaner ggplot2 janitor lubridate magrittr OneR purrr rlang rlist scales strex stringr tibble tidyselect xgboost]; }; @@ -17346,6 +17430,7 @@ in with self; { tidycat = derive2 { name="tidycat"; version="0.1.2"; sha256="1c8ib5zcz2xk7yrzh4j5q4ccv6lnw58sh2ggqn04k2wp0gcj2zcs"; depends=[dplyr forcats magrittr stringr tibble tidyr]; }; tidycensus = derive2 { name="tidycensus"; version="1.1"; sha256="1h32f1qgb7fnlbmqdkgl98cql06ds5r25ad3zbqrcs58ckngs549"; depends=[crayon dplyr httr jsonlite purrr rappdirs readr rlang rvest sf stringr tidyr tigris units xml2]; }; tidycharts = derive2 { name="tidycharts"; version="0.1.2"; sha256="0afdd5rdpwpyciangybwxahfjivqm13i3az2wzaky4s6mv68x6bd"; depends=[dplyr htmlwidgets lubridate magick magrittr rlang rsvg stringr testthat]; }; + tidycmprsk = derive2 { name="tidycmprsk"; version="0.1.0"; sha256="00wp47kdwp5kln25mn1lvzwchxrf3fq3qlacn9pi2drhjcp7hwj4"; depends=[broom cli cmprsk dplyr ggplot2 gtsummary hardhat purrr rlang stringr survival tibble tidyr]; }; tidycode = derive2 { name="tidycode"; version="0.1.1"; sha256="0ahjhn1ar93xnd1snxnivdl43d1b6ica0pc30rgh8jpha87zbsay"; depends=[glue matahari pryr purrr rlang tibble]; }; tidycomm = derive2 { name="tidycomm"; version="0.2.1"; sha256="1h1xixa7fbijp1iifpwl689b1pz1vvpy7v4sc9wnkqgw0q31b3iy"; depends=[broom dplyr forcats glue magrittr MBESS purrr rlang stringr tibble tidyr]; }; tidycwl = derive2 { name="tidycwl"; version="1.0.5"; sha256="1ii23iamqmplsmnjnr6x9a1wjrbk82r0ywbskfifv26i66wyjqc3"; depends=[dplyr htmlwidgets jsonlite magrittr visNetwork webshot yaml]; }; @@ -17390,7 +17475,7 @@ in with self; { tidytable = derive2 { name="tidytable"; version="0.6.5"; sha256="1k8zl5hxbmizas8lhcp5nzqis7wikn9bbdjwjkc6cpzbpr722bd3"; depends=[data_table glue lifecycle magrittr pillar rlang tidyselect vctrs]; }; tidytext = derive2 { name="tidytext"; version="0.3.2"; sha256="0as7lscjl6ywk85almmb4f71vxmgkfds46g52ryggkg2isksvq3g"; depends=[dplyr generics hunspell janeaustenr lifecycle Matrix purrr rlang stringr tibble tokenizers vctrs]; }; tidytidbits = derive2 { name="tidytidbits"; version="0.2.3"; sha256="1sia4bxfnb0hw047l6hl013si3iaisac51lp9b42m22hcxzxwgx0"; depends=[dplyr extrafont forcats magrittr purrr rlang stringr tibble tidyr tidyselect]; }; - tidytransit = derive2 { name="tidytransit"; version="1.1.0"; sha256="0z4xiz8afvsqcc4x7ac1p6y60lwx5yr1s78mi7a0c322lc80yfln"; depends=[checkmate data_table digest dplyr geodist gtfsio hms httr lubridate readr rlang sf tibble tidyr zip]; }; + tidytransit = derive2 { name="tidytransit"; version="1.2.0"; sha256="0zvzjnrn7znm58di38h53kmbyabc9a514010rywpjs6w9blvyb6g"; depends=[checkmate data_table digest dplyr geodist gtfsio hms httr rlang sf]; }; tidytreatment = derive2 { name="tidytreatment"; version="0.2.1"; sha256="09d9qiwb1mniwfyklkiylr1glix1f441kkxlbff2x99j1xij197x"; depends=[dplyr purrr readr rlang tidybayes tidyr]; }; tidytree = derive2 { name="tidytree"; version="0.3.6"; sha256="1gnpm4zz0kvqng5s179301q0h5993ajynm8y0zbdz38qcmzfpsdk"; depends=[ape dplyr lazyeval magrittr rlang tibble tidyr tidyselect yulab_utils]; }; tidytuesdayR = derive2 { name="tidytuesdayR"; version="1.0.1"; sha256="0slpfajv5cxqxfb1sh98574zrcgihiazscpr0zga2i6kiwn3kgpy"; depends=[httr jsonlite lubridate magrittr purrr readr readxl rstudioapi rvest usethis xml2]; }; @@ -17407,7 +17492,7 @@ in with self; { tigreBrowserWriter = derive2 { name="tigreBrowserWriter"; version="0.1.5"; sha256="0izgx1khci6qc6pz85dxj75kzxvpr30l0vhcv9476jrcbwqs4k8m"; depends=[DBI RSQLite]; }; tigris = derive2 { name="tigris"; version="1.5"; sha256="0wj4q09k4nwl1kj7r05ivhdy4vp8x1hfblc6xsbnpb8p72l1rxsy"; depends=[dplyr httr magrittr maptools rappdirs rgdal sf sp stringr uuid]; }; tikzDevice = derive2 { name="tikzDevice"; version="0.12.3.1"; sha256="040yz6wi05151m9nal97symv66a133kk0a8c1h6nz058zk081vav"; depends=[filehash png]; }; - tiledb = derive2 { name="tiledb"; version="0.9.7"; sha256="0rdkcyx69xlrzpc8cz0jijx97afhrvhl5wq1d8xcrfjcjni74rfn"; depends=[nanotime Rcpp]; }; + tiledb = derive2 { name="tiledb"; version="0.10.1"; sha256="09cb5xi20096iy3dyiirb9alq0a0f03yaxjhacnwz4cmbxrv3phc"; depends=[nanotime Rcpp]; }; tilegramsR = derive2 { name="tilegramsR"; version="0.2.0"; sha256="11cnyvlghg8z7lr9ahzsjpyjrqnxqs77wdcydqvavrsqj745xvi2"; depends=[sf sp]; }; tilemaps = derive2 { name="tilemaps"; version="0.2.0"; sha256="06pwwlndb7nvw2b0h0fak3vnpbi11mxsby43qm9ng3k3sqwrqjz2"; depends=[clue ggplot2 igraph lwgeom sf smoothr]; }; tiler = derive2 { name="tiler"; version="0.2.5"; sha256="02sxc70s8v5b5lf1fpv1ig1hmpkamsmzbgpk6zds504gh9kz7qxy"; depends=[png raster rgdal sp]; }; @@ -17428,7 +17513,7 @@ in with self; { timereg = derive2 { name="timereg"; version="2.0.1"; sha256="1mrqy54jwgfygjlm7hvlx42c631is1nc1q6jd3chw2cx3pi9lhiq"; depends=[lava numDeriv survival]; }; timesboot = derive2 { name="timesboot"; version="1.0"; sha256="1ixmcigi1bf42np93md8d3w464papg9hp85v0c3hg3vl4nsm2bji"; depends=[boot]; }; timeseriesdb = derive2 { name="timeseriesdb"; version="0.4.1"; sha256="1ghb3lg63fs9zx34l5qczv39mdccnmqzlc74l1zhb8qmsg8sm1g2"; depends=[data_table DBI jsonlite openxlsx RPostgreSQL shiny xtable xts zoo]; }; - timetk = derive2 { name="timetk"; version="2.6.1"; sha256="1yf0b8rpk0nmvvhz0hgj6mykr0kml0kh8f13xpzadwp9n0i0r3mw"; depends=[anytime assertthat dplyr forcats forecast generics ggplot2 hms lubridate padr plotly purrr readr recipes rlang rsample slider stringi stringr tibble tidyr tidyselect timeDate xts zoo]; }; + timetk = derive2 { name="timetk"; version="2.6.2"; sha256="0wmay9ccl398jp1wy2czfpapmf4vy59sz4dc5y6z97jdimjmg46i"; depends=[anytime assertthat dplyr forcats forecast generics ggplot2 hms lubridate padr plotly purrr readr recipes rlang rsample slider stringi stringr tibble tidyr tidyselect timeDate xts zoo]; }; timetools = derive2 { name="timetools"; version="1.14"; sha256="13jchgd9fc8hxj74wm1kg4rwcng4yxblkq04i33djsqghgb5f9mj"; depends=[]; }; timetree = derive2 { name="timetree"; version="1.0"; sha256="1fpdp6mkwm67svqvkfflvqxn52y2041zl09rxrms28ybbd5f84c0"; depends=[phangorn XML]; }; timevis = derive2 { name="timevis"; version="1.0.0"; sha256="003kizf974xibj90n60ipzwnrbdwjb659yxwi2xfnvh067aibwsp"; depends=[htmltools htmlwidgets jsonlite lubridate magrittr rmarkdown shiny]; }; @@ -17597,7 +17682,7 @@ in with self; { trendchange = derive2 { name="trendchange"; version="1.1"; sha256="19r0kmwsim78ynssyh6j0zd99cz96cacy3hmyrjabwwvz0f8sk3h"; depends=[]; }; trendeval = derive2 { name="trendeval"; version="0.0.1"; sha256="1cpv7l26ia40s46wfi4jwhwzl0xxs0dgzv4ngg8frbv5l80fmvmr"; depends=[ellipsis rsample tibble tidyr trending yardstick]; }; trending = derive2 { name="trending"; version="0.0.3"; sha256="1crp8hizvasm47fjlf8pjy5jn7y9s16vm7dmpiyr4qb8sizia6xw"; depends=[ciTools MASS tibble vctrs]; }; - trendsegmentR = derive2 { name="trendsegmentR"; version="1.0.0"; sha256="0zgm5nbm5azmz6x0xg4aphc80q6x1cvijry9pznyi0mg14743g86"; depends=[]; }; + trendsegmentR = derive2 { name="trendsegmentR"; version="1.1.0"; sha256="1r582zmxcdmq3sg5wd4zc2p1fv8sgbys5nryvvslak7nj5h0i2yq"; depends=[]; }; trendyy = derive2 { name="trendyy"; version="0.1.1"; sha256="03n7qdfc197hds8bdwl20b0nn62nqnz9r35v1q315nm3ccdifl1p"; depends=[crayon dplyr gtrendsR magrittr purrr stringr tibble]; }; trialr = derive2 { name="trialr"; version="0.1.5"; sha256="11b5wmyq4ki2n0cr2hp2lf219i8q5yh6biyyl8wnvajiaa8560ja"; depends=[BH binom coda dplyr ggplot2 gtools magrittr MASS purrr Rcpp RcppEigen rlang rstan rstantools StanHeaders stringr tibble tidybayes]; }; triangle = derive2 { name="triangle"; version="0.12"; sha256="1cv3l97myhkyl0c4xjympqghlk0av8xfk00av8kj93ndgkv5bfj7"; depends=[]; }; @@ -17656,7 +17741,7 @@ in with self; { tsdf = derive2 { name="tsdf"; version="1.1-8"; sha256="00s0aiis88611xsq9px61f9gwprp803wcvi5milvc7qckrh1kw0z"; depends=[]; }; tsdisagg2 = derive2 { name="tsdisagg2"; version="0.1.0"; sha256="1vjypf9d4rdprpgxfsgpccn412kvar59v341ridq2hcdp7hfb70s"; depends=[]; }; tsensembler = derive2 { name="tsensembler"; version="0.1.0"; sha256="0amb3dn96hdgy5a0j6s43mf82cdjwbz8dhz3yrjlr07nknxzirzi"; depends=[Cubist doParallel earth foreach gbm glmnet kernlab monmlp pls ranger RcppRoll softImpute xgboost xts zoo]; }; - tseries = derive2 { name="tseries"; version="0.10-48"; sha256="0wa4rcf0igayi1yrwc6wak6d491560p0z89rz32haqlkiiq25gak"; depends=[quadprog quantmod zoo]; }; + tseries = derive2 { name="tseries"; version="0.10-49"; sha256="1fhldj95d16cwygw8xg0kvr4xk569mpzprdvahlsf4hzykc2dgs5"; depends=[quadprog quantmod zoo]; }; tseriesChaos = derive2 { name="tseriesChaos"; version="0.1-13.1"; sha256="0qfrrzd0h8n9zp7wj5fl88wkiv22fs5zy8x509g316j0avm5zjr3"; depends=[deSolve]; }; tseriesEntropy = derive2 { name="tseriesEntropy"; version="0.6-0"; sha256="04clfkpkiy5p5nxcq59c7f4v1llj1d95lvck23h1px50lvb993fv"; depends=[cubature ks]; }; tsfeatures = derive2 { name="tsfeatures"; version="1.0.2"; sha256="1zi7p7gdd9bg6rpdin88rq9qi43cpk663xmvffa7d5p1w45831kd"; depends=[forecast fracdiff furrr future purrr RcppRoll tibble tseries urca]; }; @@ -17734,7 +17819,7 @@ in with self; { twitteR = derive2 { name="twitteR"; version="1.1.9"; sha256="1hh055aqb8iddk9bdqw82r3df9rwjqsg5a0d2i0rs1bry8z4kzbr"; depends=[bit64 DBI httr rjson]; }; twitterwidget = derive2 { name="twitterwidget"; version="0.1.1"; sha256="1dlhydhy69284gg3jsxwa6h8cp1rlkg1j8h8z1fjz4fyy1p5xrpv"; depends=[htmlwidgets]; }; twl = derive2 { name="twl"; version="1.0"; sha256="0n2r40ddsr5zpzi92k7f0lvq78k5cmfbqzjxvr78hwq6j13dhar3"; depends=[corrplot data_table MCMCpack Rfast]; }; - twn = derive2 { name="twn"; version="0.2.0"; sha256="1nc3jc3rakppn9bxzqwbs7yhgzp8skz62zyybpwn2ddnjskc2fn1"; depends=[crayon dplyr rlang stringr tibble]; }; + twn = derive2 { name="twn"; version="0.2.1"; sha256="1lw2dvcchx7ldxjibw4i48vpnfqk6z1cqb86ilfxhdm6baply8g0"; depends=[crayon dplyr rlang stringr tibble]; }; twosamples = derive2 { name="twosamples"; version="1.1.1"; sha256="0c2hk49zysjgkgm3pv9j1gnpg5hs5icdzn40ihyqj8aziynkripp"; depends=[Rcpp]; }; twostageTE = derive2 { name="twostageTE"; version="1.3"; sha256="0mkxs3lmzja51zdrf5himhwcdygpj6czhdd2bydakm26kvw7znwr"; depends=[isotone]; }; twoway = derive2 { name="twoway"; version="0.6.3"; sha256="02z2syb0g92d97gjxfkarpil9b2n25s128606h071jl0s88cr4ar"; depends=[]; }; @@ -17749,7 +17834,6 @@ in with self; { tzupdater = derive2 { name="tzupdater"; version="0.1.2"; sha256="0s1simvn76m569iq24qb3w6xli0202cjf1jr3a4qy58fs4sda2kv"; depends=[]; }; u5mr = derive2 { name="u5mr"; version="0.1.1"; sha256="16znlmxanhg1m6fq28z62jv033fxgr4njzz50hgskprvgvx8svkj"; depends=[lifecycle]; }; uCAREChemSuiteCLI = derive2 { name="uCAREChemSuiteCLI"; version="0.2.0"; sha256="1nccgkxv57inhgvgmhwm4fr8cp28sj8n83za5gam9xx1f42mzsqk"; depends=[ChemmineR usethis]; }; - uFTIR = derive2 { name="uFTIR"; version="0.1.4"; sha256="1blgwn6i0dadmr7vml6rbniv103mgr9hgx2dwgcxbagfyv00ah24"; depends=[raster Rcpp RcppArmadillo sp]; }; uGMAR = derive2 { name="uGMAR"; version="3.4.0"; sha256="1n8ishsldfmqdbxz719gakrngrqr9bj7fzddq2ri86yj9krfgas1"; depends=[Brobdingnag gsl pbapply]; }; uHMM = derive2 { name="uHMM"; version="1.0"; sha256="1516ipadxi7rc1dbinr5rva2fbcr5i2zg3rlli5wy7r6naf8fzzl"; depends=[chron class cluster clValid corrplot FactoMineR HMM tcltk2 tkrplot]; }; uaparserjs = derive2 { name="uaparserjs"; version="0.3.5"; sha256="0v24smgsz1p2wa23mc2llx7dycwmgf7zyxdhwxgwplabpmy3xzhl"; depends=[progress V8]; }; @@ -17765,7 +17849,7 @@ in with self; { udpipe = derive2 { name="udpipe"; version="0.8.6"; sha256="1jqx9nbxl61k6s20rjkyghkv6lq1dzf63a9gljaxmv30hwgmgrvk"; depends=[data_table Matrix Rcpp]; }; udunits2 = derive2 { name="udunits2"; version="0.13.1"; sha256="1l889f8iy8qaacxfs6ll62d6hs8g8qsr5ynn24grpvp8dk8l888w"; depends=[]; }; ufs = derive2 { name="ufs"; version="0.5.2"; sha256="1lqnib0pizx97isqbr4v2r4qp7fph6znbd5arbjnxmlh2wblfbsl"; depends=[digest diptest dplyr ggplot2 ggrepel ggridges gridExtra gtable htmltools kableExtra knitr pander plyr pwr rmdpartials scales SuppDists]; }; - ugatsdb = derive2 { name="ugatsdb"; version="0.2.1"; sha256="1r4h01x9a1rhvkrqa61n0a71q5xpyf26xzdf2i99l9vif6pg8rfv"; depends=[collapse data_table DBI RMySQL writexl]; }; + ugatsdb = derive2 { name="ugatsdb"; version="0.2.2"; sha256="0f5fgys80b5nlj5f8jadh5jpylhhb5hsknrsspfac5amncmb0yyv"; depends=[collapse data_table DBI RMySQL writexl]; }; ugomquantreg = derive2 { name="ugomquantreg"; version="1.0.0"; sha256="1a5vc1qgy3kp1by5bp296w980lkxcghzzxibhap2jg06jnzjfcq8"; depends=[gamlss gamlss_dist pracma Rcpp]; }; ui = derive2 { name="ui"; version="0.1.1"; sha256="15hcdzaj75ip6j7yglx8rqhp4y3yf3aw5cpbjgk1mjr4cya7lvzi"; depends=[Matrix maxLik mvtnorm numDeriv]; }; uiucthemes = derive2 { name="uiucthemes"; version="0.3.1"; sha256="1faggg8hiqw4pblq5r3m9wi3x5m6kbjq0flf88mqa993v9rpdrf6"; depends=[rmarkdown xaringan]; }; @@ -17777,8 +17861,9 @@ in with self; { ukpolice = derive2 { name="ukpolice"; version="0.2.2"; sha256="1dwwixhiarlpdss7rhiamzcsl1k2yphgmjzh7wn2my4vxj06817l"; depends=[httr jsonlite purrr snakecase tibble]; }; ulid = derive2 { name="ulid"; version="0.3.0"; sha256="0xxkqrnlz3pkb3s1gacfzqav54w97gc0w8rh0fn1qy5rkmg2bplv"; depends=[Rcpp]; }; umap = derive2 { name="umap"; version="0.2.7.0"; sha256="191vpy84s0bar06y9z1qx43x2kc4qp7lmrcmd0cvz2pnzq722jab"; depends=[openssl Rcpp reticulate RSpectra]; }; + umiAnalyzer = derive2 { name="umiAnalyzer"; version="1.0.0"; sha256="147x48mr9mj0njwbz39876795rninvk89zm9immkppdm4s5g1ghf"; depends=[BiocManager dplyr DT forcats ggplot2 gridExtra magrittr pheatmap plotly readr Rsamtools scales shiny shinydashboard shinyFiles shinyWidgets stringr tibble tidyr viridis]; }; ump = derive2 { name="ump"; version="0.5-8"; sha256="1sg226caq9y41cwl7wr5s9z3bpq2j5p6rj6fy2pasbzimgzw0byx"; depends=[]; }; - umx = derive2 { name="umx"; version="4.9.0"; sha256="0512082fyjs2qx7k16ndza0xldmq1axc9zk4gwk98k208rq8wgln"; depends=[cowplot DiagrammeR DiagrammeRsvg ggplot2 kableExtra knitr lavaan MASS Matrix MuMIn mvtnorm nlme OpenMx polycor R2HTML RCurl rsvg scales xtable]; }; + umx = derive2 { name="umx"; version="4.10.10"; sha256="1c0cl9q29sq0047qlh9gnc17bvypxk82mr9l81s7hvnns80yq9w5"; depends=[cowplot DiagrammeR DiagrammeRsvg ggplot2 kableExtra knitr lavaan MASS Matrix MuMIn mvtnorm nlme OpenMx polycor R2HTML RCurl rsvg scales xtable]; }; unbalanced = derive2 { name="unbalanced"; version="2.0"; sha256="18hy9nnq42s1viij0a5i9wzrrfmmbf7y3yzjzymz2wnrx4f2pqwv"; depends=[doParallel FNN foreach mlr RANN]; }; unbalhaar = derive2 { name="unbalhaar"; version="2.0"; sha256="0v6bkin1cakwl9lmv49s0jnccl9d6vdslbi1a7kfvmr5dgy760hs"; depends=[]; }; uncertainty = derive2 { name="uncertainty"; version="0.2.0"; sha256="1mq14ny7l3gy3wjsqijnm37azavyapxszjnckd861h4hgcpdcdjz"; depends=[mvtnorm triangle]; }; @@ -17808,7 +17893,7 @@ in with self; { unival = derive2 { name="unival"; version="1.1.0"; sha256="0j7fl77my2273k72s8k9v5pcb85swxfipjxmk4vw487i7aq8b1nq"; depends=[psych]; }; univariateML = derive2 { name="univariateML"; version="1.1.0"; sha256="1bnpb1g6hm8p3q73kyb4mxijzj53cfp38ns98bq12m9yvsjq1c4n"; depends=[actuar assertthat extraDistr fGarch logitnorm nakagami tibble]; }; universals = derive2 { name="universals"; version="0.0.4"; sha256="1dx7xh5l2dkamskpwfc9qsjf7df1fj54ph6s3sxhnhdbppzckd4d"; depends=[]; }; - unix = derive2 { name="unix"; version="1.5.3"; sha256="07cjwmxdivzf43nq1b1gd4i6fz9m7xhr7wsdj630q6jiy7ll8r1l"; depends=[]; }; + unix = derive2 { name="unix"; version="1.5.4"; sha256="0wj85h5lljzw4qj4ry79y05gd6vakqff8lzw9f70154i79jq74hl"; depends=[]; }; unjoin = derive2 { name="unjoin"; version="0.1.0"; sha256="1hp9fxkb59z0cpnwxpaf5whglrljg2nrmsygdb98klxsama9gr5z"; depends=[dplyr rlang tibble]; }; unmarked = derive2 { name="unmarked"; version="1.1.1"; sha256="1zabfsij6kjxzy7qj2h2x21kd24qm7kfs98095by54aadhwlyis8"; depends=[lattice lme4 MASS Matrix plyr raster Rcpp RcppArmadillo TMB]; }; unnest = derive2 { name="unnest"; version="0.0.3"; sha256="1as245gzviq3394g36q82m1cv2rdrwjlm3icd18lcz6sl13wggdy"; depends=[]; }; @@ -17857,7 +17942,7 @@ in with self; { utile_tables = derive2 { name="utile.tables"; version="0.2.1"; sha256="0bj3rg4f9dby7qzf0m95dg626ws4nz5v2vn3m50x8g3pqq8m7lmp"; depends=[dplyr purrr rlang tidyselect utile_tools]; }; utile_tools = derive2 { name="utile.tools"; version="0.2.6"; sha256="1l3l6x37290ism459kjfbgm2s0w7sa84q93nzrij1z250gv6g0rp"; depends=[lubridate purrr vctrs]; }; utile_visuals = derive2 { name="utile.visuals"; version="0.3.0"; sha256="1653wds2126b82bfm22a17xgrkybw6an5j3apg53ag5ykak9pg87"; depends=[dplyr ggplot2 gridExtra purrr]; }; - utilities = derive2 { name="utilities"; version="0.3.0"; sha256="1dbx9p5hx9fbp0aqnnvx3xskbkpsxa47bm5j4fx5511gqqc82i0z"; depends=[]; }; + utilities = derive2 { name="utilities"; version="0.4.0"; sha256="0wyi4qs1lzqdjqkx06xn73fcv25mgqax02zqv15cjvblgq4lil35"; depends=[]; }; utility = derive2 { name="utility"; version="1.4.5"; sha256="0a11bxyg8la6yvxr04qbhay05jb2ihd7calc1zcisgj43kq6k7xd"; depends=[]; }; utilityFunctionTools = derive2 { name="utilityFunctionTools"; version="0.1.1"; sha256="1225nl83yka31j0adm1210kc89vs3hi9i2pqrykax109sgk0nw97"; depends=[spatstat_geom]; }; utilsIPEA = derive2 { name="utilsIPEA"; version="0.0.6"; sha256="07avc0j6qkzqmznbydn0zdg743g7g7kn2bcx5n03m3wg0fqyggr7"; depends=[data_table dplyr RCurl stringdist stringr]; }; @@ -17978,9 +18063,9 @@ in with self; { vimp = derive2 { name="vimp"; version="2.2.5"; sha256="13461pcvyc6rad1rf2ymmkyzcwjxw7g4fs8qd51baljhjnjmifv0"; depends=[boot data_table dplyr magrittr MASS rlang ROCR SuperLearner tibble]; }; vimpclust = derive2 { name="vimpclust"; version="0.1.0"; sha256="0ly7piz7q88sh2g7zq5b2pqph9467b4fclgq9amm0m7xc8vrv4f9"; depends=[ggplot2 mclust PCAmixdata Polychrome rlang]; }; vindecodr = derive2 { name="vindecodr"; version="0.1.1"; sha256="0yvchdf90l8lkzyba5wrpma6vjcgf19li159s8s79y8sgp5pyx7p"; depends=[httr]; }; - vinereg = derive2 { name="vinereg"; version="0.7.4"; sha256="0d9x7w6gqjfl0kvj94ypqi6c2xl2ig440xhqgvfkmyswif2w9ffi"; depends=[assertthat BH kde1d Rcpp RcppEigen RcppThread rvinecopulib wdm]; }; + vinereg = derive2 { name="vinereg"; version="0.8.0"; sha256="1v0bk9xm8547g76nd0v4n5wn6v4kagyd5ssqmlpc2768ldmcn64f"; depends=[assertthat BH kde1d Rcpp RcppEigen RcppThread rvinecopulib wdm]; }; vines = derive2 { name="vines"; version="1.1.5"; sha256="057d2fdh03cq9kh4vz94arqscahmz14xbr2g59l0vn205lnyilf1"; depends=[ADGofTest copula cubature TSP]; }; - violinplotter = derive2 { name="violinplotter"; version="2.0.1"; sha256="0kin6b7alykxging8kh443mgn665sd9hqfpr2dq2c91pyvdpvdkj"; depends=[]; }; + violinplotter = derive2 { name="violinplotter"; version="3.0.0"; sha256="02hyc85bmpc4lzpy4yay73gz4v00wns1ghkkf9sljl3kdgybmyi2"; depends=[]; }; vioplot = derive2 { name="vioplot"; version="0.3.7"; sha256="1dmdasp3jldc41233z6r08w3j76vyyp9m3jrj7n4ahk48yd5siq6"; depends=[sm zoo]; }; viopoints = derive2 { name="viopoints"; version="0.2-1"; sha256="0cpbkkzm1rxch8gnvlmmzy8g521f5ang3nhlcnin419gha0w6avf"; depends=[]; }; vip = derive2 { name="vip"; version="0.3.2"; sha256="1qsvyfms79sn46jdmq7q5r0d6gwjqhr9pll1y776rx0bj7vx1ax5"; depends=[ggplot2 gridExtra magrittr plyr tibble]; }; @@ -18012,7 +18097,7 @@ in with self; { vita = derive2 { name="vita"; version="1.0.0"; sha256="114p2lzcr8rn68f0z4kmjdnragqlmi18axda9ma4sbqh8mrmjs9v"; depends=[randomForest Rcpp]; }; vitae = derive2 { name="vitae"; version="0.4.2"; sha256="1pxd612qq0jzp29qcykb4c1s9mljpmq6xfvhmyx8r9nv8j816qkv"; depends=[dplyr glue knitr pillar rlang rmarkdown tibble vctrs xfun yaml]; }; vitality = derive2 { name="vitality"; version="1.3"; sha256="17micfmlksnw167vavvhlk431fm20k74y5ggs47pgz5fwpm854zp"; depends=[]; }; - vivid = derive2 { name="vivid"; version="0.2.2"; sha256="06kd97ypjqi8xhx57g9qjczcw8w9g5cfa7sqn4g58whs65h8cnc1"; depends=[colorspace condvis2 DendSer dplyr flashlight GGally ggalt ggnewscale ggplot2 igraph RColorBrewer tidyr]; }; + vivid = derive2 { name="vivid"; version="0.2.3"; sha256="1kqh9skcafng0wcbb2vqdlba7ix3mjhqd2r51npv1ys3p20jrrmw"; depends=[colorspace condvis2 DendSer dplyr flashlight GGally ggalt ggnewscale ggplot2 igraph RColorBrewer tidyr]; }; vivo = derive2 { name="vivo"; version="0.2.1"; sha256="1cfval06byviw7himr5nql34h4jaway9gb6dzya3v994p7v851cg"; depends=[DALEX ggplot2]; }; vizdraws = derive2 { name="vizdraws"; version="1.1"; sha256="19lr55swfnl79pdkybgfbkm0pvx60x64rlya0wkhdijbizyr1jvb"; depends=[dplyr glue htmlwidgets magrittr stringr tidyr]; }; vkR = derive2 { name="vkR"; version="0.2"; sha256="1pk444fcw4yyv2dnfrw9vynbpc4gwr5yv9jd41djp9yipdf6d53l"; depends=[httr jsonlite purrr XML]; }; @@ -18056,6 +18141,7 @@ in with self; { vtree = derive2 { name="vtree"; version="5.4.6"; sha256="03n79xn4wr4hqrj571781igd07dw0sxfi6cnvmhmshc0brzkz7s9"; depends=[DiagrammeR DiagrammeRsvg htmlwidgets rsvg shiny]; }; vtype = derive2 { name="vtype"; version="0.8"; sha256="0j070bn86a6hlg99h2qaf0dlbnjjsmx1zdcmvl3acymr31bqyvrj"; depends=[randomForest]; }; vudc = derive2 { name="vudc"; version="1.1"; sha256="0zxz6n3ixa3xjzcinky8ymqjx9w8y8z65mz8d84dl00mxzkmkz4h"; depends=[]; }; + vueR = derive2 { name="vueR"; version="0.5.3"; sha256="0am4iwgadi9c9f7zm5zx3nrzyhy7w1qgp9rkyypzwb6bicjjb9cz"; depends=[htmltools htmlwidgets]; }; vwline = derive2 { name="vwline"; version="0.2-2"; sha256="1hilr996xn5wh8kfyab55w2i1c02a8x909h4ahag5q6s7603qng5"; depends=[gridBezier polyclip]; }; vwr = derive2 { name="vwr"; version="0.3.0"; sha256="1h790vjcdfngs1siwldvqz8jrxpkajl3266lzadfnmchfan1x7xv"; depends=[lattice latticeExtra stringdist]; }; wBoot = derive2 { name="wBoot"; version="1.0.3"; sha256="08qgkkv6jvqmxq5gvfp7jbrc3k8mxajfww7k8a3p8888aq411p7q"; depends=[boot simpleboot]; }; @@ -18087,7 +18173,7 @@ in with self; { warpMix = derive2 { name="warpMix"; version="0.1.0"; sha256="13zbl4aifhg7j5b3vpwgzgs09hr7yblz0rckmj5qh40s78j8cpfn"; depends=[fda fields lme4 MASS nlme reshape2]; }; washdata = derive2 { name="washdata"; version="0.1.3"; sha256="0m7rwwi189sbsv3144x14jqmfax30f6ri1pisy47yggmmjpdplps"; depends=[]; }; washeR = derive2 { name="washeR"; version="0.1.2"; sha256="0sb5sgwf7y9sd291qfj1az3x6h6gmznnnsdmqizkmv2xz9029rxz"; depends=[gplots]; }; - washex = derive2 { name="washex"; version="1.1.0"; sha256="01535lxl90dg9lsqw5xhhw9l4wb0ghjbf88kqs0dz6p4p3jiwzrh"; depends=[curl dplyr httr purrr rlang XML xml2]; }; + washex = derive2 { name="washex"; version="1.2.0"; sha256="0g5cgs6y3l7ng4bcia1w3ysb8z7s3187ph5g052bssd3w01kim6g"; depends=[curl dplyr httr purrr rlang XML xml2]; }; waspr = derive2 { name="waspr"; version="1.0.0"; sha256="0rs7h9pjiqq7as5k7yrj3phn6lgdl7dzyirbmk2jjp7mw9iqhy9i"; depends=[BH Rcpp RcppArmadillo]; }; waterData = derive2 { name="waterData"; version="1.0.8"; sha256="0884agh876wf3qlbc75fbaa47x2iwvncz7r2l25qw34n8lxq1yr6"; depends=[dataRetrieval lattice latticeExtra lubridate xml2]; }; waterYearType = derive2 { name="waterYearType"; version="1.0.1"; sha256="09brbqcd41khycz9lhn84w68wpk8lsdnzb6lzc10gm5s5ambgj06"; depends=[]; }; @@ -18144,6 +18230,7 @@ in with self; { weibullness = derive2 { name="weibullness"; version="1.19.8"; sha256="19s44mxxcnhngifxshsyjr3a9zvbwywmqgby5dxd73yid1p2k9mr"; depends=[]; }; weibulltools = derive2 { name="weibulltools"; version="2.0.0"; sha256="1flgnsivam9vyrs6hwn3119s5bzczjm5qb1xjwydl1cd6r2984k5"; depends=[dplyr ggplot2 lifecycle magrittr plotly purrr Rcpp RcppArmadillo sandwich segmented SPREDA survival tibble tidyr]; }; weightQuant = derive2 { name="weightQuant"; version="1.0"; sha256="1ngz51wr5qpnb98lfbddwvipcra86dq5whm6z8c4xd921anb15bx"; depends=[doParallel foreach quantreg]; }; + weightedGCM = derive2 { name="weightedGCM"; version="0.1.0"; sha256="04c24mxpvqdaprg6627w84ikmwxy96c1zcifn2y5n9ir7dlih5r3"; depends=[GeneralisedCovarianceMeasure mgcv xgboost]; }; weightedScores = derive2 { name="weightedScores"; version="0.9.5.3"; sha256="1wf01z94snwbqp22waz7qays3ymg5lsxpfpafdarad2b6mg5j2g8"; depends=[mvtnorm rootSolve]; }; weightedZdiff = derive2 { name="weightedZdiff"; version="0.1.0"; sha256="1mrhjg0h7qiwya8jrmf5h4gc352ahc6fczlk5kfhqw5vkwr0b1k3"; depends=[]; }; weightr = derive2 { name="weightr"; version="2.0.2"; sha256="1qsyak91kdgv48wf6qhpfbiirlg4ba9w6rw8ynjcsnqqdvmly1lb"; depends=[ggplot2 scales]; }; @@ -18171,6 +18258,7 @@ in with self; { whitestrap = derive2 { name="whitestrap"; version="0.0.1"; sha256="1jcnxqxvkhyz9j6jay5834ncv5fxb9qiyyyj3b8al75mqknmn8ra"; depends=[]; }; whoa = derive2 { name="whoa"; version="0.0.2"; sha256="1wa1s2dqwkmfa3avrgqkm6w59b6vm2xnnb77q25w187wdpjq65xx"; depends=[dplyr ggplot2 magrittr Rcpp tibble tidyr vcfR viridis]; }; whoami = derive2 { name="whoami"; version="1.3.0"; sha256="19fwl7z55s4kl2xzwqwh8iwg13kdrv222vyl3kibxgwrjcjwj2y2"; depends=[httr jsonlite]; }; + whomds = derive2 { name="whomds"; version="1.0.1"; sha256="1imz98lldrhxnqlq062vblacc25yr2gmpq9fnq8aj9y7jpc719c5"; depends=[colorspace dplyr eRm foreign ggplot2 ggraph GPArotation httr igraph intergraph lordif lubridate nFactors openxlsx plyr polycor psych purrr RColorBrewer readr rlang scales srvyr stringr survey TAM tibble tidygraph tidyr WrightMap]; }; wiad = derive2 { name="wiad"; version="0.0.1.0"; sha256="1yr1cng5659n8chfghpyfxvqzl8b57vdjzv5m22cbcvrlq6m6p4j"; depends=[abind data_table dplyr DT shiny]; }; widals = derive2 { name="widals"; version="0.6.1"; sha256="1094yaaq2xb0ykvc1j3hs87j1p4h7zgf8mkn4han8iw5fmr9zncy"; depends=[snowfall]; }; widgetframe = derive2 { name="widgetframe"; version="0.3.1"; sha256="0j0d73m72nzfc1wyrgsqr99ldx72adis6pd57mpim55hz0n9l224"; depends=[htmltools htmlwidgets magrittr purrr]; }; @@ -18206,7 +18294,7 @@ in with self; { wmlf = derive2 { name="wmlf"; version="0.1.2"; sha256="0zxw84l5v12r15hpyd1kbajjz3cbkn5g884kmj72y7yi0yi1b6d6"; depends=[waveslim]; }; wmm = derive2 { name="wmm"; version="1.1.1"; sha256="0qy4cp4d8nlcqlcs4mqjv1f1kf1yh9y2wvh1ak6f049qlj7yfwfb"; depends=[]; }; wmwpow = derive2 { name="wmwpow"; version="0.1.3"; sha256="03rd75r4wih1w7srhnwqxjkirisb43y1sd2f1wzixqj8lq0dmb25"; depends=[lamW MASS smoothmest]; }; - wnl = derive2 { name="wnl"; version="0.6.3"; sha256="199fkpbflnrk27gymxp7ikjxq9hwg0zydlb25fns7b8l9xl2glmg"; depends=[numDeriv]; }; + wnl = derive2 { name="wnl"; version="0.6.4"; sha256="0157q09paiyvg9almsq8bp5z8kj8bclc4rak7n1qrsx2asjyl2py"; depends=[numDeriv]; }; wnominate = derive2 { name="wnominate"; version="1.3"; sha256="0k4w6qbmwqd720dsslmb3xl53lr0b16rr0w9frybfq4046g9i2c6"; depends=[pscl]; }; woe = derive2 { name="woe"; version="0.2"; sha256="15mvcmwnrqxpzn054lq85vyzq5rgxkiwbd40gnn4s3ny1xdrwgsm"; depends=[]; }; woeBinning = derive2 { name="woeBinning"; version="0.1.6"; sha256="0x890h5fh59n54587adyzphr956fkg3px8i7c378aq1fs7k35gxs"; depends=[]; }; @@ -18231,12 +18319,13 @@ in with self; { workflows = derive2 { name="workflows"; version="0.2.4"; sha256="1sxrgza922p137z41jcj2iwk19lxzwh6kp4kz7h9kw0b8rvfqwab"; depends=[cli ellipsis generics glue hardhat lifecycle parsnip rlang tidyselect vctrs]; }; workflowsets = derive2 { name="workflowsets"; version="0.1.0"; sha256="0596hb17mshpag3vjy2wl6fi2mdw54i9gc5za10vzy8vpkigb9jy"; depends=[cli dplyr generics ggplot2 hardhat lifecycle prettyunits purrr rlang rsample tibble tidyr tune vctrs withr workflows]; }; workloopR = derive2 { name="workloopR"; version="1.1.4"; sha256="1gynlvmqxyibql5j3db9dwvc0jsc9jqzpy3d3gp43d5lcl11mcmq"; depends=[pracma signal]; }; + worldfootballR = derive2 { name="worldfootballR"; version="0.4.5"; sha256="13mzgn479002gf0yrd4gisdqk606s7l9jnc0awpiq7d3k74jqr29"; depends=[dplyr glue janitor jsonlite lubridate magrittr progress purrr qdapRegex readr rlang rvest stringi stringr tidyr withr xml2]; }; worldmet = derive2 { name="worldmet"; version="0.9.5"; sha256="03dc93b6akah0pf36h0327jb65slsb3bypyv57cnkyxwyvni6w4s"; depends=[doParallel dplyr foreach leaflet openair purrr readr tidyr]; }; worms = derive2 { name="worms"; version="0.2.2"; sha256="183chjdi5qvsmdznvc9igcxaz769a37rwh5nzgvf5zf012a85wir"; depends=[httr plyr]; }; worrms = derive2 { name="worrms"; version="0.4.2"; sha256="1gpbyplfpcrapmci8axarrjjijsgh2dmhnsn79g1lhrafvm2ichs"; depends=[crul data_table jsonlite tibble]; }; wosr = derive2 { name="wosr"; version="0.3.0"; sha256="0fl9mizrjg3r7n7gslsxgaw3k2v63scqmvnv6341q8sq7018hzln"; depends=[httr jsonlite pbapply xml2]; }; wowa = derive2 { name="wowa"; version="1.0.1"; sha256="0jdw73z5whvb4bb9syhqscllaa31bhs81gmgckxh7w1r3pp42yha"; depends=[Rcpp]; }; - wpa = derive2 { name="wpa"; version="1.6.2"; sha256="12b0cyddpcnzy57c2n1xa47p3m8n3gr9iqijh4l009vb4x9r6z3d"; depends=[data_table dplyr DT ggplot2 ggraph ggrepel ggwordcloud htmltools igraph magrittr markdown networkD3 proxy purrr reshape2 rmarkdown scales tidyr tidyselect tidytext]; }; + wpa = derive2 { name="wpa"; version="1.6.3"; sha256="11lw6jgzyq43w401j58yp3qd2xzpq0a45zl2ksc0iwnc563bizhi"; depends=[data_table dplyr DT ggplot2 ggraph ggrepel ggwordcloud htmltools igraph magrittr markdown networkD3 proxy purrr reshape2 rmarkdown scales tidyr tidyselect tidytext]; }; wpp2008 = derive2 { name="wpp2008"; version="1.0-1"; sha256="0gd3vjw1fpzhp3qlf1jpc24f76i0pxsjs5pb1v3k2si6df7q4msd"; depends=[]; }; wpp2010 = derive2 { name="wpp2010"; version="1.2-0"; sha256="1h87r1cn4lnx80dprvawsyzfkriscqjgr27gvv7n19wvsx8qd57k"; depends=[]; }; wpp2012 = derive2 { name="wpp2012"; version="2.2-1"; sha256="00283s4r36zzwn67fydrl7ldg6jhn14qkf47h0ifmsky95bd1n5k"; depends=[]; }; @@ -18275,19 +18364,20 @@ in with self; { x_ent = derive2 { name="x.ent"; version="1.1.7"; sha256="15qra77dqhj27g3qx92gram4mq4n9fdidygdpvxfmcx7ww3vc6yh"; depends=[ggplot2 jsonlite statmod stringr xtable]; }; x12 = derive2 { name="x12"; version="1.9.3"; sha256="05dzf38vlf73bmwdjs6w32d0b91cs6zgdmg7afw9gs36qfi5fahn"; depends=[stringr x13binary]; }; x13binary = derive2 { name="x13binary"; version="1.1.57-2"; sha256="13j1xylbdsmrnnccn1vcww0y0890vn057j836yqihmlgrh3prcbi"; depends=[]; }; + x3ptools = derive2 { name="x3ptools"; version="0.0.3"; sha256="04j40nkwlsaga6kp60rf1grk76dw2i1sqivfm2sj017n0v6mj017"; depends=[assertthat digest dplyr MASS png pracma readr rgl xml2 zoo]; }; xLLiM = derive2 { name="xLLiM"; version="2.2"; sha256="0gmy3jy1nf0fixgwcgfhrwcd85ran5ic7srzcx46akad828a4znq"; depends=[abind capushe corpcor e1071 glmnet igraph MASS Matrix mda progress randomForest]; }; xROI = derive2 { name="xROI"; version="0.9.20"; sha256="0xa12qsw5xbbfqyv60apr4f9gx7q6rad4ywayvw8l2zla2wnhq5h"; depends=[colourpicker data_table jpeg lubridate moments raster RCurl rgdal rjson shiny shinyjs sp stringr tiff]; }; xSub = derive2 { name="xSub"; version="3.0.1"; sha256="0c3jc801pn85wm17jj911spryg6p3gq19im1506zkv8lqwsy1nab"; depends=[countrycode haven RCurl]; }; xVA = derive2 { name="xVA"; version="0.8.5"; sha256="1scn7acp69k80q9ksygj7ns9937yim8iwhpi54ygm28h20jnfllr"; depends=[SACCR Trading]; }; xaringan = derive2 { name="xaringan"; version="0.22"; sha256="0qk8cp52g18l1pp7i5lhqbklafd20b51fhv7qil2dd397wjqcghk"; depends=[htmltools knitr rmarkdown servr xfun]; }; - xaringanthemer = derive2 { name="xaringanthemer"; version="0.4.0"; sha256="1dy0w5cb23hdjffaff5gznwgpq98b3g9aslqvq79gy7xh7asikh9"; depends=[colorspace glue purrr whisker]; }; + xaringanthemer = derive2 { name="xaringanthemer"; version="0.4.1"; sha256="05gkk9ll5whfvhbd8x3p180qzqcz6krz2s26lfbrp2y7srpx9jr4"; depends=[colorspace glue purrr whisker]; }; xbreed = derive2 { name="xbreed"; version="1.0.1.1"; sha256="032i04ginyf9dyabfkygnhrkq7lqdvvyw7s41vjimy2kvjrnkkkx"; depends=[BGLR]; }; xdcclarge = derive2 { name="xdcclarge"; version="0.1.0"; sha256="1j8wsidwmfjygqlwavxinv4bqc6rddy42jdmlknsjfrrs49yj8kn"; depends=[nlshrink Rcpp RcppArmadillo]; }; xergm_common = derive2 { name="xergm.common"; version="1.7.8"; sha256="03mjpafwfkmyj5ba84jydap9rp0i602izjlbd511xbxcw6dx2k0b"; depends=[ergm network]; }; xesreadR = derive2 { name="xesreadR"; version="0.2.3"; sha256="1pvdx0mxg2f885bhy4hb3kqzcgva4q7hzzaipkfzyi5lnjdsbc81"; depends=[bupaR data_table dplyr lubridate purrr stringr tidyr XML xml2]; }; xfun = derive2 { name="xfun"; version="0.28"; sha256="0civd050r94w2vwfx3xgz1w36wkwrkm5dscdv5kb3klbvqwy8nqb"; depends=[]; }; xgb2sql = derive2 { name="xgb2sql"; version="0.1.2"; sha256="1gw5dw0ck5hip8mv347zaswrggk395bg2hgn02bvqs0d31jhmgvi"; depends=[data_table xgboost]; }; - xgboost = derive2 { name="xgboost"; version="1.5.0.1"; sha256="1ya3mm4sl1yg1q9xmzfdzygqqrq49wa8y3p5j0256nn24w0lzlw6"; depends=[data_table jsonlite Matrix]; }; + xgboost = derive2 { name="xgboost"; version="1.5.0.2"; sha256="04xbgrrb3aq067hrivslq5f2rd1v95yfv7lkj596ijyqi6ibjl27"; depends=[data_table jsonlite Matrix]; }; xgobi = derive2 { name="xgobi"; version="1.2-15"; sha256="03ym5mm16rb1bdwrymr393r3xgprp0ign45ryym3g0x2zi8dy557"; depends=[]; }; xgxr = derive2 { name="xgxr"; version="1.1.1"; sha256="00fd9n2qivfxg2b7vynssc82afa7nskg4akk6cgxnyhcai5jbmra"; depends=[assertthat binom Deriv DescTools dplyr ggplot2 glue gtable Hmisc labeling magrittr minpack_lm pander png RCurl readr scales stringr tibble]; }; xkcd = derive2 { name="xkcd"; version="0.0.6"; sha256="1z2y0ihn68ppay7xkglhw7djki5654g6z4bbpyy41if57z9q554f"; depends=[extrafont ggplot2 Hmisc]; }; @@ -18343,7 +18433,7 @@ in with self; { yamlme = derive2 { name="yamlme"; version="0.1.1"; sha256="1cknx8ndcb9rz1j7z27244vba8hxyh5sa9zwsv6rwk9g1c52vmyg"; depends=[]; }; yap = derive2 { name="yap"; version="0.1.1"; sha256="0m126vpfvlmwkpy14i9wbzr51hb8r6s3wcdm3vp9izfccpnxfxl2"; depends=[lhs randtoolbox]; }; yaps = derive2 { name="yaps"; version="1.2.5"; sha256="0309vc67v5kfbdcah5gnvdqwdxir4k1ik47dw6msw2hvg6lpqvqf"; depends=[circular cowplot data_table ggplot2 ggrepel nloptr plyr Rcpp RcppEigen reshape2 splusTimeSeries tictoc TMB viridis zoo]; }; - yardstick = derive2 { name="yardstick"; version="0.0.8"; sha256="13b0lyj2k0r568mwlyz9yvp9156rzlj4jqnjazaffh9vwqh4whir"; depends=[dplyr generics pROC rlang tidyselect vctrs]; }; + yardstick = derive2 { name="yardstick"; version="0.0.9"; sha256="00hv4gk1ba4dab8i3dcq7lim4bll7l572rgc8km9x4ja8by95j8h"; depends=[dplyr generics pROC rlang tidyselect vctrs]; }; yarr = derive2 { name="yarr"; version="0.1.2"; sha256="16q109jrydckz7s1rkmr2sh8q92cgr1c534fvpbh3h0bc3fvvf8g"; depends=[]; }; yarrr = derive2 { name="yarrr"; version="0.1.5"; sha256="1258bj7x4icaxfabnnd3fgwydnqbzxkih7zw0sdlwdax3q8fw5c5"; depends=[BayesFactor circlize jpeg]; }; yasp = derive2 { name="yasp"; version="0.2.0"; sha256="0fza8h9y1wmarsmjcvw4r970d6j4ii795pd2h4xh9nlsirv50adi"; depends=[]; }; @@ -18360,6 +18450,7 @@ in with self; { youtubecaption = derive2 { name="youtubecaption"; version="1.0.0"; sha256="15cafl7b03xrql2y2ayy6ajf6v764wym3xqs4pbzlf6ncy8qwl5r"; depends=[dplyr magrittr purrr reticulate stringr tibble writexl]; }; yowie = derive2 { name="yowie"; version="0.1.0"; sha256="1sm3dg4sirvlb17ciwldvnc1zzfgwxm38x1k2n99nwa6sygn1nrw"; depends=[tsibble]; }; ypr = derive2 { name="ypr"; version="0.5.2"; sha256="1bbcwy4hngai6cajgcir1g6hdjh9xdpfcxqzm8ba8ikyjfzwn9bw"; depends=[chk ggplot2 lifecycle purrr scales yesno]; }; + ypssc = derive2 { name="ypssc"; version="1.1.0"; sha256="0fpph19amj1cafcbh5k6s75pi7nahzgfvnsbs9i5644gv43iavbj"; depends=[dplyr eulerr Peptides readxl spelling stringr svDialogs]; }; yuima = derive2 { name="yuima"; version="1.9.6"; sha256="1iqcv6m2lbdnpkcmgbmjhdn233pq3b2g6s9naiq3ks0fyv04zpar"; depends=[boot cubature expm glassoFast mvtnorm Rcpp RcppArmadillo zoo]; }; yuimaGUI = derive2 { name="yuimaGUI"; version="1.3.0"; sha256="1znwfkhnmv9m32izikziqpgxx8gpw50786r81va808x7q058cp5n"; depends=[DT ggplot2 ghyp plotly quantmod sde shiny shinyBS shinydashboard shinyjs yuima]; }; yulab_utils = derive2 { name="yulab.utils"; version="0.0.4"; sha256="1bj93gnj7j4b7dgkbr5v22rsbwfcw5dvipl5irmidaakvrihd19q"; depends=[]; }; @@ -18368,7 +18459,7 @@ in with self; { zCompositions = derive2 { name="zCompositions"; version="1.3.4"; sha256="15cfqk1vzamz66y9idnrwxlrp2sirkp44gwkcmia4s13x5pwh8mf"; depends=[MASS NADA truncnorm]; }; zGPS_AO = derive2 { name="zGPS.AO"; version="0.1.0"; sha256="18dqssnj4gch1yg0qvrj4j2ry95sy6a9z8yz2zi8nzhhsj8dz1qq"; depends=[doParallel doRNG dplyr foreach ggplot2 hrbrthemes MASS plotly pscl questionr viridis]; }; zTree = derive2 { name="zTree"; version="1.0.7"; sha256="005zk6wpchpss6865ki35yawgf668pn70163ah97rnfkhfaswm6y"; depends=[plyr]; }; - zalpha = derive2 { name="zalpha"; version="0.2.0"; sha256="0wyk4smrch5c0jnzi8z0in1hcbfsddgw4n28dljj917wyg5cnmqd"; depends=[]; }; + zalpha = derive2 { name="zalpha"; version="0.3.0"; sha256="04hi5lxgcqzmkbqppp5fv8x7wdgap3bgr8b8pv4pvavzh73jlmxs"; depends=[]; }; zbank = derive2 { name="zbank"; version="0.1.0"; sha256="0vzvlri3sncvbz2cdg8wzlpskm1lq9ji0jrfy5cx4ib19m6gxhpc"; depends=[crul jsonlite tibble]; }; zcurve = derive2 { name="zcurve"; version="1.0.9"; sha256="0hrgf8id2fdy5xakgif508kl8sddil01mwrq4fnchajzrgp2lb9w"; depends=[evmix nleqslv Rcpp Rdpack]; }; zdeskR = derive2 { name="zdeskR"; version="0.1.1"; sha256="0fqayn2g7903qs51x4ymy0aq36bwrgvp1k2701cd02zvnxy91l3j"; depends=[dplyr httr jsonlite magrittr plyr purrr tidyr]; }; @@ -18394,6 +18485,7 @@ in with self; { zlog = derive2 { name="zlog"; version="1.0.0"; sha256="1d5j31p0h3rrn230087h3ngpvwknlisjv0f1qdbicdj9m177spci"; depends=[]; }; zoeppritz = derive2 { name="zoeppritz"; version="1.0-8"; sha256="1711szx9zz17q6pfinyzlyrw7m9772c8ywlixqar2l165bkjalgm"; depends=[]; }; zoib = derive2 { name="zoib"; version="1.5.5"; sha256="0inm7f2pc68ksqxvq12xp9jc99vj7ydylvs24ip12nksbj5k1n8f"; depends=[abind coda Formula rjags]; }; + zoid = derive2 { name="zoid"; version="1.0.0"; sha256="12gvb80ybnhc3yij1kgffhx2xygamjr4yli405dyndh0n5q6kxvy"; depends=[BH compositions gtools Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; zoltr = derive2 { name="zoltr"; version="0.5.1"; sha256="12zh7y3pwidclscgvd0b0iaqq9j5y8mc8xd6pz4vs0jy5qs3ahar"; depends=[base64url dplyr httr jsonlite magrittr MMWRweek mockery readr rlang webmockr]; }; zonator = derive2 { name="zonator"; version="0.6.0"; sha256="1plxchpd4ypp36phl13pi9yvlrqi3lk83lv5rldrhdqynhcgfw2k"; depends=[ggplot2 raster RColorBrewer reshape2 rgdal]; }; zonebuilder = derive2 { name="zonebuilder"; version="0.0.2"; sha256="0mxf3dz0d6bi5wwjilqivdxhy5ypnq5svky8zygha0clv45l4dmn"; depends=[RColorBrewer sf]; }; @@ -18420,7 +18512,7 @@ in with self; { BCA = derive2 { name="BCA"; version="0.9-3"; sha256="0ksd6b0ykydgdn33x29bwwqkrp23cvdj3imps0l6qs1p4465j5nf"; depends=[car clv flexclust Rcmdr RcmdrMisc rpart]; broken = true; }; BIS = derive2 { name="BIS"; version="0.2.1"; sha256="0mngmchgc46wc9a7ksyqrvj6k46nm4ih7x69k3xijfia9bgkym0v"; depends=[dplyr readr rvest tidyr xml2]; broken = true; }; BNN = derive2 { name="BNN"; version="1.0.2"; sha256="13h9xqfdqnc9d8brx1xlmvb4nrkpwncwjz98y7i3wijih85wkikd"; depends=[mvtnorm]; broken = true; }; - BayesFM = derive2 { name="BayesFM"; version="0.1.4"; sha256="14m318nxb4aqxni4zm0p6g9pysx81rmay48qglwm98gmdjxigzzk"; depends=[checkmate coda ggplot2 gridExtra plyr]; broken = true; }; + BioMedR = derive2 { name="BioMedR"; version="1.2.1"; sha256="0l3nmnqv0gzkbby4fhajbba910zpnbyckvxwds353pn54g9pcry7"; depends=[Biostrings ChemmineR fmcsR GOSemSim MASS org_Hs_eg_db pls randomForest rcdk RCurl rjson]; broken = true; }; CLA = derive2 { name="CLA"; version="0.96-1"; sha256="1nxzs0y6mid5f2903pxrkqc3rhk7vpax8wm588ddlz6c97y3m8gk"; depends=[]; broken = true; }; CPE = derive2 { name="CPE"; version="1.5.1"; sha256="0n3pd6daj0mzhh547syh7nz8iys6q27igqngldb8zd4ib4778603"; depends=[rms survival]; broken = true; }; CatPredi = derive2 { name="CatPredi"; version="1.2"; sha256="029haj44smz2k6vpk10bv3ri9qsy0ss2fn1mhw8vj42f3g8i39jb"; depends=[CPE mgcv rgenoud rms survival]; broken = true; }; @@ -18429,12 +18521,16 @@ in with self; { DNH4 = derive2 { name="DNH4"; version="0.1.11"; sha256="15a1hq8f8nz200apbm28dwyphl18rhicmf7irsdj0z1n1j898c44"; depends=[httr rvest tibble tidyr xml2]; broken = true; }; DataEntry = derive2 { name="DataEntry"; version="0.9-3"; sha256="0gfsg7wfwy88x7y1dwpgwi6fkizjnhrzj0a5ij70y4a4sjmyiy55"; depends=[digest gWidgets2 gWidgets2RGtk2 RGtk2]; broken = true; }; DengueRT = derive2 { name="DengueRT"; version="1.0.1"; sha256="11qfg4l6y3j8qh4dcsz13xjjj1n0q71c9a3c180nm5lgqv0nwb81"; depends=[drc ggplot2 nlme]; broken = true; }; + DominoPredictionLogging = derive2 { name="DominoPredictionLogging"; version="0.1.0"; sha256="1qzh8inzqk1s6cw9bsl7hazdf6cbfr11zs22723wl4xs31inp1lg"; depends=[lgr rjson uuid]; broken = true; }; EpiSignalDetection = derive2 { name="EpiSignalDetection"; version="0.1.1"; sha256="04bagnx9fs0r3167hmwgc389fl5hq7l4j6kdjjmi360vcaimx9qi"; depends=[dplyr DT ggplot2 ISOweek knitr pander rmarkdown shiny surveillance]; broken = true; }; Eunomia = derive2 { name="Eunomia"; version="1.0.1"; sha256="06a42qsf3nx1pbynikkdvmbhh1rmgnfmiggdn86b3a0ij6cq0p2r"; depends=[DatabaseConnector RSQLite SqlRender]; broken = true; }; + FLightR = derive2 { name="FLightR"; version="0.5.1"; sha256="14188r6kk194ir0l8byaqlly4lsg8w58lw5xx2s4abyhbn35kwq8"; depends=[bit CircStats circular fields GeoLight ggmap ggplot2 ggsn maptools mgcv nlme RcppArmadillo rgdal rgeos sp truncnorm]; broken = true; }; GEVACO = derive2 { name="GEVACO"; version="1.0.0"; sha256="0rslnxqbj1pbbnp849pdn6l9dyfib9w19a1q3fw7kdjfir76gk6a"; depends=[nlme RLRsim]; broken = true; }; - GPSeqClus = derive2 { name="GPSeqClus"; version="1.0.0"; sha256="1zxihac4hd2b1vvrb36v2c6lhn8pfs8q4zgzi2flyb0dnb5di09r"; depends=[geosphere leaflet leaflet_extras plotKML plyr purrr rgdal sp spacetime suncalc]; broken = true; }; GeneBook = derive2 { name="GeneBook"; version="1.0"; sha256="1cg8zyr7rbshj3shhzkrxs910dsz4brhh51jvn2qzipzd8dbvxiv"; depends=[dplyr repmis stringr svDialogs]; broken = true; }; + GeoLight = derive2 { name="GeoLight"; version="2.0.0"; sha256="1i49hyj3f5rcw0s6j2csnfwc6mnp5zn44vxjnk05wdkpw6dpvx5i"; depends=[changepoint fields maps MASS]; broken = true; }; ICSsmoothing = derive2 { name="ICSsmoothing"; version="1.2.5"; sha256="08m8p6y5zk54ha3wp5x9xbx6f2xkkqx232hsan1f1s8k9j3q5avd"; depends=[ggplot2 polynom]; broken = true; }; + IP = derive2 { name="IP"; version="0.1"; sha256="0ranpsacsl2nm8swc3saw6xh6cdsfdyq58jlpki04kk3hsqbr9p0"; depends=[stringi]; broken = true; }; + IRATER = derive2 { name="IRATER"; version="0.0.1"; sha256="0jxdvjmnmangbqy3ibb5qrj9jz3wrzs0wa1r2gjk4v8vsbk0ipcf"; depends=[coda lattice plyr R2admb]; broken = true; }; ISEtools = derive2 { name="ISEtools"; version="3.1.1.1"; sha256="00d6znqz2mfmyi9ijgrg2pwl4lnvvsy00ysa7a7vjq7ip8qvcjfq"; depends=[coda Xmisc]; broken = true; }; ISR3 = derive2 { name="ISR3"; version="0.98"; sha256="0mmpdl9ndlj9i0k3zl7ja0g7y9pm67igw925ld5qnz7a36plygxs"; depends=[]; broken = true; }; IceCast = derive2 { name="IceCast"; version="2.1.0"; sha256="0h3z68lfjw5s51601m17m2gvn12vkwj5gzc70dqzfjmxdkgv3p28"; depends=[coda maptools MASS ncdf4 raster Rcpp RcppArmadillo rgeos sp]; broken = true; }; @@ -18444,7 +18540,6 @@ in with self; { LexisNexisTools = derive2 { name="LexisNexisTools"; version="0.3.4"; sha256="08v160s9znvv808wcw7319p3dk189bmpypg2wkdzzgkdby4gj3fr"; depends=[data_table pbapply quanteda quanteda_textstats stringdist stringi tibble]; broken = true; }; MAFDash = derive2 { name="MAFDash"; version="0.1.0"; sha256="0xk9zbdwmm597jck8v3w76d2s72k6amv8ya94y7jbnik60ndwnda"; depends=[bsplus canvasXpress circlize ComplexHeatmap crosstalk data_table dplyr DT ensurer flexdashboard GenomicRanges ggbeeswarm ggplot2 htmltools IRanges knitr maftools pheatmap plotly RColorBrewer reshape2 rmarkdown TCGAbiolinks]; broken = true; }; MHTcop = derive2 { name="MHTcop"; version="0.1.1"; sha256="1mr8y8brsi37b5qx3fqm0bj90dgknzzwhxfmvyd9kxbxh19whgxq"; depends=[copula matrixStats MCMCpack mvtnorm stabledist]; broken = true; }; - MIMSunit = derive2 { name="MIMSunit"; version="0.11.0"; sha256="03mzjf86qs9kqpqn9vqspfv4jkx52s3yvgr3nk1p28w5qhdi2nq5"; depends=[caTools dplyr dygraphs ggplot2 lubridate magrittr matlab plyr R_utils RColorBrewer readr shiny signal stringr tibble xts]; broken = true; }; MLPA = derive2 { name="MLPA"; version="1.10.0"; sha256="1w8vhvs8ri8iyh068g59chz3mn0wapa4jr1wmhjlzwa2c651q2cx"; depends=[]; broken = true; }; MRMR = derive2 { name="MRMR"; version="0.1.4"; sha256="0dgbhlynaaka7mdzl6igwgcdzvy6cm2y8mbxaf9pfla8w3z8y0lq"; depends=[ggplot2 lmtest lubridate plyr reshape2]; broken = true; }; MVT = derive2 { name="MVT"; version="0.3"; sha256="0vinlv3d5daf8q7pd9xgs51nxz2njgdba5750vygmv883srlzi9d"; depends=[]; broken = true; }; @@ -18454,22 +18549,26 @@ in with self; { N2H4 = derive2 { name="N2H4"; version="0.5.9"; sha256="09ikdnn17zx9l683k6mrc4hifxnd5d7fjxm6qdvxxbn10dh6qgvj"; depends=[dplyr httr jsonlite lubridate rvest tibble tidyr xml2]; broken = true; }; OligoSpecificitySystem = derive2 { name="OligoSpecificitySystem"; version="1.3"; sha256="17mspf1ph2ybv046zckykfdcbrsiz40hrs6ib5mpwkfnrvsp1w7l"; depends=[tkrplot]; broken = true; }; OpenMPController = derive2 { name="OpenMPController"; version="0.2-5"; sha256="00hs8v47pr2d726z8izkfrgmayw147hdm16rr9rw1zs3ad216zjj"; depends=[]; broken = true; }; + OutlierDC = derive2 { name="OutlierDC"; version="0.3-0"; sha256="1vm3zx4qmj9l0ddfqbksm1qyqzzqrxf93gh4kj52h68zlsfxwv41"; depends=[Formula quantreg survival]; broken = true; }; + PANDA = derive2 { name="PANDA"; version="0.9.9"; sha256="1sf3c49v4mb3mz2imqlqdbh1iab7bc2pxpi8bmgj2jld133555ip"; depends=[cluster GO_db]; broken = true; }; POPdemog = derive2 { name="POPdemog"; version="1.0.3"; sha256="0j83c853ligmw8ag4pb0vj46sfn2w2ynh4wvgkabzs688hxxni8r"; depends=[]; broken = true; }; Plasmode = derive2 { name="Plasmode"; version="0.1.0"; sha256="1qcni9zdckhsnw616jn7rdfd09kbl5wd4hljdja0w73jz1wd1z14"; depends=[arm epiDisplay foreign gbm glm2 lattice latticeExtra lme4 MASS Matrix mgcv nlme nnet RColorBrewer survey survival twang xtable]; broken = true; }; QZ = derive2 { name="QZ"; version="0.2-1"; sha256="1xivasa5dppm9z02ki6ciqxj0ybxch41w1xszl9zqrf755b6f6xw"; depends=[Matrix]; broken = true; }; QuantumClone = derive2 { name="QuantumClone"; version="1.0.0.6"; sha256="1520jgkzp8g7gv7ggqhvlrdnpdyhygqjgsd1my5jq30afdqj6qmp"; depends=[DEoptim doParallel foreach fpc ggplot2 gridExtra NbClust optimx]; broken = true; }; RAhrefs = derive2 { name="RAhrefs"; version="0.1.4"; sha256="0yd7jbv2x711dnhbvwjjg7qhg8h8bh5564amsv9bkqw661i042m3"; depends=[assertthat httr jsonlite testthat]; broken = true; }; + RCSL = derive2 { name="RCSL"; version="0.99.95"; sha256="1ngzbhrc74ljhidsf7a17k4hyx0igv2srgbf822gm2wawzsmp0y2"; depends=[ggplot2 igraph mclust NbClust pracma RcppAnnoy Rtsne SingleCellExperiment umap]; broken = true; }; + RCzechia = derive2 { name="RCzechia"; version="1.8.3"; sha256="025fv6dh1q6g13wmi2q7czgm30d6j9v56ihp8cvag6yqxq60l08x"; depends=[curl httr jsonlite magrittr sf]; broken = true; }; RDFTensor = derive2 { name="RDFTensor"; version="1.3"; sha256="1kfhhn0lb1r61bkgxn7rv1smgk8b7vxbc8y97hdmg5argiywc65i"; depends=[doParallel foreach Matrix pracma]; broken = true; }; RNAsmc = derive2 { name="RNAsmc"; version="0.6.0"; sha256="0q4b24baabzx41zqygy6l2jnyzc4m7knmlnhra4hhc5f5cl5ab8r"; depends=[circlize RRNA]; broken = true; }; RNRCS = derive2 { name="RNRCS"; version="0.2.5"; sha256="19q78l8mh4701vqvr36vqc87n39s5ivzhiy5lvnxbd4dgibk1jr2"; depends=[ggplot2 magrittr rvest xml2]; broken = true; }; RSCABS = derive2 { name="RSCABS"; version="0.9.5"; sha256="193wbf1v18xv098i6abpglb239788d9gjzqbn8p3aai0la6y1pk3"; depends=[gWidgets2 gWidgets2RGtk2 R2HTML RGtk2]; broken = true; }; RefFreeEWAS = derive2 { name="RefFreeEWAS"; version="2.2"; sha256="1aya34iz5v3xfpj86x9ab998m7fdwl138ly007mgdayacvqi4a6y"; depends=[quadprog]; broken = true; }; Rhpc = derive2 { name="Rhpc"; version="0.21-247"; sha256="0r4zikqzkcyyvywxq1s8jcq6h559mxilkmzpnl79781hh537jvii"; depends=[]; broken = true; }; + SDraw = derive2 { name="SDraw"; version="2.1.13"; sha256="1kx8kfga3zspfdgf9vq2lclszrhf3bfwkfhwqri64kn8fdr34jsq"; depends=[covr deldir rgeos sp spsurvey]; broken = true; }; SEAA = derive2 { name="SEAA"; version="0.9.6"; sha256="0f1j8pq3a0liyjxjlc91v8nm5y0fr8fq7qlhdayvkf1fx96srqs2"; depends=[clusterProfiler ggforce ggplot2 ggpubr ggrepel gridExtra org_Hs_eg_db org_Mm_eg_db reshape2 Rsubread tidyr]; broken = true; }; SNPassoc = derive2 { name="SNPassoc"; version="2.0-2"; sha256="16raq5nkm24xqfshncwmf46z2naf2fcixgjs9b7gy1368wn3ahzl"; depends=[BiocStyle ggplot2 haplo_stats mvtnorm plyr poisbinom survival tidyr]; broken = true; }; SpatialEpiApp = derive2 { name="SpatialEpiApp"; version="0.3"; sha256="0svnnzqshk08s58ishy8xhqch44mb5svgfphkvpgysdd68dgaysr"; depends=[dplyr dygraphs ggplot2 htmlwidgets knitr leaflet mapproj maptools RColorBrewer rgdal rgeos rmarkdown shiny shinyjs SpatialEpi spdep xts]; broken = true; }; StatCharrms = derive2 { name="StatCharrms"; version="0.90.96"; sha256="1451aj1476qjpmxhpbgd8g55i7rp2msml64xsiy25h7x9g6d9w05"; depends=[cairoDevice car clinfun coxme gWidgets2 gWidgets2RGtk2 lattice multcomp nlme R2HTML RGtk2 RSCABS survival]; broken = true; }; - SymTS = derive2 { name="SymTS"; version="1.0"; sha256="17vhm00zd9yxl6li36bsfkm4rsizjsm93ibrzgqnkl72sqmmlwfi"; depends=[]; broken = true; }; TLBC = derive2 { name="TLBC"; version="1.0"; sha256="08w187akbhfbz6nrrf7avf02lrhgj7bbrjmim9gkh4wlbjhzvw67"; depends=[caret HMM randomForest signal stringr]; broken = true; }; TNRS = derive2 { name="TNRS"; version="0.1.0"; sha256="146shb1dg4iyaanrdr1l8nqpiqf05la1ai34w74z6wsd1mpcchqy"; depends=[jsonlite RCurl rjson]; broken = true; }; TrafficBDE = derive2 { name="TrafficBDE"; version="0.1.0"; sha256="1lnh9lbjxaradivnd1dkd2szggjh2r4v7klpyxb862dxsmdxxrqw"; depends=[caret data_table dplyr lubridate neuralnet RCurl zoo]; broken = true; }; @@ -18477,6 +18576,7 @@ in with self; { TwoPhaseInd = derive2 { name="TwoPhaseInd"; version="1.1.1"; sha256="0xsqiq4x7vmhif9j8zi1smbchwm4fsbgb10i4vxi0biijybizk9z"; depends=[survival]; broken = true; }; UKB_COVID19 = derive2 { name="UKB.COVID19"; version="0.1.1"; sha256="0626cix3v5j2nflqy6g0dc2101pif3p8x3r62d5kmn1si5p171gn"; depends=[data_table dplyr here magrittr questionr tidyverse]; broken = true; }; UncertainInterval = derive2 { name="UncertainInterval"; version="0.7.0"; sha256="1lywwjkbmlbxhp2ahmsw2f47i0p848cky7xx1lxrg5ydfzq9kzl5"; depends=[car MASS nloptr psych reshape2 shiny zoo]; broken = true; }; + VNM = derive2 { name="VNM"; version="7.1"; sha256="19qglcibb7r6jjz0n0piklwfv3hi4jphd6vmyfbm0ccjjkmn5nin"; depends=[Rcpp]; broken = true; }; XPolaris = derive2 { name="XPolaris"; version="1.0.2"; sha256="1l05svscgkv9bzkawi2kp9zhchrhxxma3271b828j34pkrnnmq5m"; depends=[curl dplyr ggplot2 httr magrittr purrr raster sf tidyr]; broken = true; }; aRbs = derive2 { name="aRbs"; version="0.1.3"; sha256="19s4x2w036xllrsarapmp8rvyxcsky82k4h9mfr2rbhdfid6h1f3"; depends=[crayon data_table dlstats dplyr DT ggplot2 lubridate progress purrr rvest shiny shinyBS shinycssloaders shinydashboard stringr xml2]; broken = true; }; abmR = derive2 { name="abmR"; version="1.0.4"; sha256="1sz27ym4lfzsf8413p3zdq51gcn9lp3bbgjgah0wfas4v3yyfsp4"; depends=[geosphere ggplot2 googledrive gstat gtsummary kableExtra purrr raster rgdal rgeos rnaturalearth rnaturalearthdata sf sp swfscMisc table1 tmap]; broken = true; }; @@ -18490,12 +18590,15 @@ in with self; { aptg = derive2 { name="aptg"; version="0.1.1"; sha256="0mdhgc0jrl2za3k2awm92vky2ghcssqq1x2h57ns9b17lwdrsdl4"; depends=[ape brranching phytools taxize xml2]; broken = true; }; artemis = derive2 { name="artemis"; version="1.1.1"; sha256="1v875xn0mvw7p7jdp6d3hpc4cp8yq2aq0b80rq1c619n9rkjq4ks"; depends=[BH ggplot2 lme4 loo Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; broken = true; }; aspline = derive2 { name="aspline"; version="0.1.0"; sha256="1xywp471ly6f0n88lwhpwlg54fizdkjxksli9c60vbi8r56n46mr"; depends=[dplyr fda ggplot2 magrittr Matrix mgcv pryr pspline Rcpp reshape2 rlang splines2 tidyr]; broken = true; }; - ausplotsR = derive2 { name="ausplotsR"; version="1.2.6"; sha256="1vnf1rhg5frv1kc5bdssvljww6bw2q1cj29y4304851fifk8l502"; depends=[betapart curl ggplot2 gtools httr jose jsonlite mapdata maps maptools plyr R_utils simba sp vegan]; broken = true; }; + automultinomial = derive2 { name="automultinomial"; version="2.0.0"; sha256="04rjg3xjlhnkchzvdxqm762z5abm81s5b9czgzmli30zh07bf3fd"; depends=[igraph Matrix numDeriv]; broken = true; }; batchr = derive2 { name="batchr"; version="0.0.2"; sha256="0fkrv6dlyla7bbl00f16lypnz5idyjz9kdqslgbx3pnfwx5hngwx"; depends=[chk cli furrr hms hmstimer yesno]; broken = true; }; binomialMix = derive2 { name="binomialMix"; version="1.0.1"; sha256="1ak3h0lgjmrv9miwn7fl6jvcp8xdld53swjz71q67q999s42np0m"; depends=[dplyr gmp lubridate MASS rlang Rmpfr stringr]; broken = true; }; bmd = derive2 { name="bmd"; version="0.5"; sha256="0d4wxyymycb416sdn272292l70s1h2m5kv568vakx3rbvb8y6agy"; depends=[drc]; broken = true; }; + bmeta = derive2 { name="bmeta"; version="0.1.2"; sha256="19pm60xpmlanngq4nbibp0n5m98xw24b2xghz92ly31i3mkg2n68"; depends=[forestplot R2jags]; broken = true; }; + bnpmr = derive2 { name="bnpmr"; version="1.2"; sha256="0vpqhs1h2mphn9w5yngb7lxvmzrhn7mkj7ca6hykhhg48s2ra98g"; depends=[]; broken = true; }; boostr = derive2 { name="boostr"; version="1.0.0"; sha256="123ag8m042i1dhd4i5pqayqxbkfdj4z0kq2fyhxfy92a7550gib2"; depends=[foreach iterators stringr]; broken = true; }; caliver = derive2 { name="caliver"; version="2.0.0"; sha256="04qa3zrk70c8ak70djfh23jyfxs8293s8wzkk6cs0nyrknhaxzzj"; depends=[ggplot2 lubridate ncdf4 raster rworldmap]; broken = true; }; + circglmbayes = derive2 { name="circglmbayes"; version="1.3.0"; sha256="0i5aacr7vqznm3rhlznc02xjzjkjliadxhhvsmf8wb2cvivz0wir"; depends=[BH coda ggplot2 Rcpp RcppArmadillo reshape2 shiny]; broken = true; }; compstatr = derive2 { name="compstatr"; version="0.2.1"; sha256="0pg8yacfb7jvg9xr0gmis8a4g339isd77h6wr8dd6w900q47xac0"; depends=[dplyr fs httr janitor lubridate purrr readr rlang rvest sf stringr tibble tidyr xml2]; broken = true; }; connections = derive2 { name="connections"; version="0.1.1"; sha256="08fbyzyp26nh1a46p0zi3q0wzgl0cd9bjp4lhw2bwv1bv7yayamp"; depends=[DBI dbplyr dplyr pins rscontract uuid]; broken = true; }; contextual = derive2 { name="contextual"; version="0.9.8.4"; sha256="0lww36nymg2cla83jdvl7a42cwn0il20apciz0ddplq8rw2i0a91"; depends=[data_table doParallel foreach Formula iterators itertools R_devices R6 rjson]; broken = true; }; @@ -18507,16 +18610,19 @@ in with self; { dpa = derive2 { name="dpa"; version="1.0-3"; sha256="0dmwi68riddi1q4b10c12wx6n7pqfmv30ix5x72zpdbgm72v343h"; depends=[igraph sem]; broken = true; }; dynamicGraph = derive2 { name="dynamicGraph"; version="0.2.2.6"; sha256="1xnsp8mr3is4yyn0pyrvqhl893gdx2y1zv8d2d55aah2xbfk0fjj"; depends=[ggm]; broken = true; }; dynatopmodel = derive2 { name="dynatopmodel"; version="1.2.1"; sha256="0lpfhj69bvagqzzg2kjqvn9xx8f93ii34flrrns20z3bxla6gds9"; depends=[deSolve lubridate maptools raster rgdal rgeos sp topmodel xts zoo]; broken = true; }; - dynr = derive2 { name="dynr"; version="0.1.16-2"; sha256="0k9lvrxdwfjnwbln6lv2qhqr55xrxzkw8k6b2dx1dqz76a2qr2n7"; depends=[car deSolve fda ggplot2 latex2exp magrittr MASS Matrix mice numDeriv plyr Rdpack reshape2 stringi tibble xtable]; broken = true; }; + eSIR = derive2 { name="eSIR"; version="0.4.1"; sha256="0vni057bnvjyj0s9vl6rr4qh3pz8h60fwck0xqzyl86psw73g1dh"; depends=[chron coda data_table ggplot2 gtools reshape2 rjags scales]; broken = true; }; elo = derive2 { name="elo"; version="2.1.1"; sha256="1i6qcw2plw12v065142kx58d911zr1gcsd1xic152zxvh89nmhxx"; depends=[pROC Rcpp]; broken = true; }; endogMNP = derive2 { name="endogMNP"; version="0.2-1"; sha256="0maxcp321ngbxrg0i23nlwhj849v771xahh53367x928ss4f8v7i"; depends=[]; broken = true; }; evaluator = derive2 { name="evaluator"; version="0.4.3"; sha256="1gccymjb1ad3xw3kmqafchazv9rid6v6c3h8w96ai5b2jh8zlgwk"; depends=[cli crayon dplyr extrafont ggplot2 magrittr mc2d purrr readr readxl rlang rstudioapi scales stringi tibble tidyr vctrs viridis]; broken = true; }; expands = derive2 { name="expands"; version="2.1.3"; sha256="00zb57gmpj86c7rvpqywpn4c5wl51immps935n3hd2fyk73vqljh"; depends=[ape commonsMath flexclust flexmix gplots matlab moments NbClust plyr RColorBrewer rJava]; broken = true; }; - fabisearch = derive2 { name="fabisearch"; version="0.0.3.6"; sha256="0gaw9hk7il4fsc0mklb3pfxl6kg7amydvqar8m2524hcb7ar835z"; depends=[doParallel doRNG foreach NMF reshape2 rgl]; broken = true; }; + fastshap = derive2 { name="fastshap"; version="0.0.5"; sha256="08f25ib5mry6h8lvj0g3clc9kfl5g2wdd8x8bw455wwmbcm6x5vg"; depends=[abind ggplot2 gridExtra matrixStats plyr Rcpp RcppArmadillo tibble]; broken = true; }; feedeR = derive2 { name="feedeR"; version="0.0.10"; sha256="1p64c7ibwn6k5k3vsjxrcjr84czild7g8bqw0yv4axk52vk5jfkx"; depends=[digest dplyr lubridate readr stringr tibble xml2]; broken = true; }; fpmoutliers = derive2 { name="fpmoutliers"; version="0.1.0"; sha256="108bp3smk9jnckd5237xly4ywmal03rq1kidq5z61l6zrhc3yfh9"; depends=[arules doParallel foreach Matrix pmml pryr R_utils XML]; broken = true; }; + fractalRegression = derive2 { name="fractalRegression"; version="1.0"; sha256="0lkxm3f9xz1c4kc81rfhd521q9jzsdb3ngrgn7nsawllpi2zrgwb"; depends=[Rcpp RcppArmadillo]; broken = true; }; + fulltext = derive2 { name="fulltext"; version="2.0"; sha256="104wkas9azyb2drfaz1hrgbx2ilbb0k2mb8411l10rsbkqva099f"; depends=[aRxiv crul data_table digest fauxpas hoardr jsonlite magrittr microdemic pdftools rcrossref rentrez rplos storr tibble xml2]; broken = true; }; gWidgets2RGtk2 = derive2 { name="gWidgets2RGtk2"; version="1.0-7"; sha256="14c933j0wj3lb5da75zxg3w3mfqh0nqk8rczbi4dnqd8sna6jks9"; depends=[gWidgets2 memoise RGtk2]; broken = true; }; gdmp = derive2 { name="gdmp"; version="0.2.0"; sha256="0fy8x9l6swrb78apwq9d9msz2y8dkfd2fkyp1pkmzxwdb85lmcdm"; depends=[]; broken = true; }; + genekitr = derive2 { name="genekitr"; version="0.2.1"; sha256="1xns8sq535w47l0pxja35pxgp4a5x0vnnyprmd363fi5ls9rwbi5"; depends=[clusterProfiler dplyr ggplot2 stringi stringr tibble tidyr VennDiagram]; broken = true; }; gfmR = derive2 { name="gfmR"; version="1.1-0"; sha256="0qzzbcra1fnbp0h31b1as20yhmqmi7p62xrhikj64an9avg9b277"; depends=[faraway nnet]; broken = true; }; ggguitar = derive2 { name="ggguitar"; version="0.1.1"; sha256="1lmfs54h91gzcxin37v4flkywbq3fs648mm1h9ak03xlj5nagzsi"; depends=[dplyr ggplot2 gridExtra lazyeval readr tibble]; broken = true; }; glinvci = derive2 { name="glinvci"; version="1.1.4"; sha256="0s8qmrqajsrmzp30xgi49n96ks22dxxa0c5psqkw67n66h39njlh"; depends=[ape BB lbfgsb3c numDeriv plyr Rcgmin rlang]; broken = true; }; @@ -18533,6 +18639,7 @@ in with self; { incadata = derive2 { name="incadata"; version="0.9.1"; sha256="0987zazkp3cxvk88i3yqb70s2i1cg108vc8wyhh2867s3rqdrpgh"; depends=[decoder rvest sweidnumbr xml2]; broken = true; }; ipmisc = derive2 { name="ipmisc"; version="6.0.2"; sha256="1dn815p2k1v371pv5fra6541zwc1hyjzxlx11m8pgfcyrfgmicyk"; depends=[dplyr magrittr rlang tibble tidyr zeallot]; broken = true; }; itemanalysis = derive2 { name="itemanalysis"; version="1.0"; sha256="1ksbd69mca45jlr2gpars87cf4jfm5rx6sz009sv6a83x831x5rq"; depends=[car ggplot2 polycor]; broken = true; }; + ivdoctr = derive2 { name="ivdoctr"; version="1.0.0"; sha256="18pca08cww4x13j3ks0mr84c3jkigf09s7wrh5y8pc11ypyxbgp1"; depends=[AER coda data_table MASS Rcpp RcppArmadillo rgl sandwich]; broken = true; }; jdx = derive2 { name="jdx"; version="0.1.4"; sha256="0jqf0nkdyv9g4rifzlkls0n64fdcma2yphwl478772jlgfmxm2jb"; depends=[rJava]; broken = true; }; jsr223 = derive2 { name="jsr223"; version="0.3.4"; sha256="0rir9v0qhnbl2rgkx1qz2ydj68ba9ccbdzsg6y1acczdhpl03j51"; depends=[curl jdx R6 rJava]; broken = true; }; kmcudaR = derive2 { name="kmcudaR"; version="1.1.0"; sha256="16dkv9ag5375zc23nqakbg7v6knxvh1pips9rjsls0d7rw2bg1bs"; depends=[Rcpp RcppEigen]; broken = true; }; @@ -18544,6 +18651,7 @@ in with self; { machQA = derive2 { name="machQA"; version="0.1.4"; sha256="1rdrjy9sxql2c9y691a1jrmgsv7m1ihsschixxb6wc7aahf7mav6"; depends=[machina plyr]; broken = true; }; machina = derive2 { name="machina"; version="0.1.6"; sha256="009mzqb5jgnilj9b5ldmm5600008bljlqacm8jjxvqsfnfdfg8zv"; depends=[DT httr jsonlite lubridate rhandsontable xts]; broken = true; }; mcmcabn = derive2 { name="mcmcabn"; version="0.4"; sha256="0ym7ngai8pv9xalh1s53p8f96s8xpc05zi6ryih2rjv449ib06kq"; depends=[abn coda cowplot ggplot2 ggpubr gRbase]; broken = true; }; + metabolighteR = derive2 { name="metabolighteR"; version="0.1.2"; sha256="1v50b0pp2hzn6b4xrlclaks3kd315rir44acm24mmqhqybj6lhls"; depends=[crayon dplyr httr magrittr purrr]; broken = true; }; miceMNAR = derive2 { name="miceMNAR"; version="1.0.2"; sha256="1s607icaf3c25mn8xdi3zkzmm8m7qd9a6vjdlz5j7ig2gc9f2y2d"; depends=[GJRM mice mvtnorm pbivnorm sampleSelection]; broken = true; }; migrbc = derive2 { name="migrbc"; version="2.0.9"; sha256="1nbxdm70a9lvbp4sw78719hdpbqnziw1y7r4xk8i390q2c195am1"; depends=[dplyr futile_logger lubridate Rcpp stringr]; broken = true; }; miraculix = derive2 { name="miraculix"; version="0.9.23"; sha256="0i08v5hq43296k3sa7akpq4h5dmvpkgn7cfpqwdyp0qaxkqk0k0s"; depends=[RandomFieldsUtils]; broken = true; }; @@ -18552,10 +18660,12 @@ in with self; { mnlogit = derive2 { name="mnlogit"; version="1.2.6"; sha256="0dfwpkl8g7ap5xr48smiv8vdbamd2r1liy9nwpsn0kcsr9cj65n9"; depends=[Formula lmtest mlogit]; broken = true; }; monoreg = derive2 { name="monoreg"; version="1.2"; sha256="16n622j1j998a5fhn1c1qbzk5bfa5h09d95ry89gsd00p40hqg0a"; depends=[]; broken = true; }; mosaic_find = derive2 { name="mosaic.find"; version="0.1.2"; sha256="1fzgksh8sp701qjfrvjl2bg967qjkjpilxsfkrazhw71cgmzjgjl"; depends=[minpack_lm]; broken = true; }; + mssqlR = derive2 { name="mssqlR"; version="1.0.0"; sha256="0qdnm7cx9cg14vfcnkmcjqr1jpxsw8xlrbnxldvzz44mzv2n878l"; depends=[magrittr RODBC]; broken = true; }; + multilinguer = derive2 { name="multilinguer"; version="0.0.4"; sha256="0kavgvbzv8bvv9qlr92j8mx7b802w513mqalrdyln0pw36c9i13x"; depends=[askpass fs rstudioapi rvest sys usethis xml2 zip]; broken = true; }; mvst = derive2 { name="mvst"; version="1.1.0"; sha256="03q0kdychsmn4wcn50b6dqhxn4f2mjvrr5rac942xdv75w8qklc9"; depends=[MCMCpack mnormt mvtnorm]; broken = true; }; + mwcsr = derive2 { name="mwcsr"; version="0.1.0"; sha256="0v0c5mlxfy804zp6ykjjn6rhz5ji1h3vnm97cwpdr0r016nvvr9j"; depends=[igraph Rcpp]; broken = true; }; nCal = derive2 { name="nCal"; version="2021.9-12"; sha256="133dpy2rp8sabwdlk0wjxs9rzixzcja73im94qaw26z5xsnaydhf"; depends=[drc gdata gWidgets2 kyotil]; broken = true; }; nearfar = derive2 { name="nearfar"; version="1.2"; sha256="116rq797a5fascirz8xg465fywjf40j1k5czryvqzpik0if0w00r"; depends=[car GenSA MASS nbpMatching]; broken = true; }; - npphen = derive2 { name="npphen"; version="1.1-0"; sha256="0pbf9sqdapl5q09g1hj5hi4j2wigrd0b6s0gbv1gx4wn68alrals"; depends=[ks lubridate raster rgdal rts snow]; broken = true; }; ntwk = derive2 { name="ntwk"; version="1.0.0"; sha256="1c12c3pq992f02z3ikx17zv2djq9d9ly232ha0j5jswsksqzx024"; depends=[assertthat copCAR ghyp Matrix mvtnorm pracma zoo]; broken = true; }; oc = derive2 { name="oc"; version="1.2"; sha256="0cw1gvz6gk8j718zmywqp03h9cnzn132nwbv45gr00xg2s9h7dk7"; depends=[pscl]; broken = true; }; onemap = derive2 { name="onemap"; version="2.1.3"; sha256="0fwkr845zz0j8ccrwpksb28lly1rsgj3603ak1aqqgmlx6481p08"; depends=[ggplot2 MDSMap plotly Rcpp reshape2]; broken = true; }; @@ -18571,38 +18681,47 @@ in with self; { plfMA = derive2 { name="plfMA"; version="1.0.5"; sha256="13hs06n4b28vlik9bzqdx6j85q05bsd6hb10cr39581a3m33rv5m"; depends=[cairoDevice gWidgets2 gWidgets2RGtk2 limma RGtk2]; broken = true; }; pm4py = derive2 { name="pm4py"; version="1.2.7"; sha256="11xbsmsc9pxd98fy28l3nxzhb6c2pwvh1gmm34jnqn0rjbpb2n9i"; depends=[bupaR petrinetR purrr reticulate stringr]; broken = true; }; pmdplyr = derive2 { name="pmdplyr"; version="0.3.3"; sha256="1grnqqydi84hnig1522lv4xbh9ds32wnq7sha7jn1q4186wlz1qa"; depends=[dplyr lubridate magrittr pillar rlang tibble tidyr tidyselect vctrs]; broken = true; }; + podcleaner = derive2 { name="podcleaner"; version="0.1.1"; sha256="1mgkcmayysm2amz2a94mzsyxa0kgqk4y43qsy4hp81j31ij8chkv"; depends=[dplyr fuzzyjoin magrittr progress purrr readr rlang stringi stringr tibble tidyr]; broken = true; }; podr = derive2 { name="podr"; version="0.0.5"; sha256="135nq0dw1x6ngf6mxy3yds3xsxhaf5rnv1cmhavlrklhdfygc0a4"; depends=[assertthat DBI dplyr lubridate magrittr odbc plogr RPostgres rstudioapi shiny stringr tibble]; broken = true; }; polyglot = derive2 { name="polyglot"; version="0.3.0"; sha256="1mmmdqaq882qys41lmm009ncg9s9h5x1q8psv0v3pwpar0d7vgff"; depends=[magick pins]; broken = true; }; psyosphere = derive2 { name="psyosphere"; version="0.1.6"; sha256="1hcas3jk2n11lyw1ysmci0sysxf7qg9h2msqqg7q9nqp5gbf90np"; depends=[geosphere ggplot2 Hmisc lubridate plyr rgdal RgoogleMaps sp]; broken = true; }; qbld = derive2 { name="qbld"; version="1.0.1"; sha256="0agx32f2pf1hzs3and40zd7kfkjml7qjbnn0im4dr2v10h1jz6c0"; depends=[knitr mcmcse Rcpp RcppArmadillo RcppDist rmarkdown stableGR]; broken = true; }; qoma_smuggler = derive2 { name="qoma.smuggler"; version="0.0.1"; sha256="03p9i0kr6i3adpb9lcszcmdr9p26nfy7f8hw2sbydazglaw4hscr"; depends=[lubridate rhli tibble]; broken = true; }; rGEDI = derive2 { name="rGEDI"; version="0.1.11"; sha256="0fkvy4p82jyfbbfymkfbrdyh13hk6a6wghk2myb64p5nhz8kv7iz"; depends=[bit64 curl data_table fs getPass ggplot2 hdf5r jsonlite lazyeval raster RColorBrewer rgdal rgeos sp]; broken = true; }; + rKolada = derive2 { name="rKolada"; version="0.2.0"; sha256="0ikyjzg8xbzyah37dpfwq2slssz956irm4dj8b7zv6x9qxi09gj9"; depends=[dplyr glue httr jsonlite magrittr purrr rlang stringr tibble tidyr urltools]; broken = true; }; rModeling = derive2 { name="rModeling"; version="0.0.3"; sha256="0xrjxayp59f31wwcqqkzs5my2j2lpbv1f4pp709fmqxz02vbdzhv"; depends=[caret e1071 MASS]; broken = true; }; rabhit = derive2 { name="rabhit"; version="0.1.5"; sha256="0dqzcv241g2b2slygq87w4qkdxalr58zs61k7485b8745xansxmv"; depends=[alakazam cowplot data_table dendextend dplyr fastmatch ggdendro ggplot2 gridExtra gtable gtools htmlwidgets plotly plyr RColorBrewer reshape2 rlang splitstackshape stringi tidyr tigger]; broken = true; }; + randomsearch = derive2 { name="randomsearch"; version="0.2.0"; sha256="0ywr4ms66p5nmq8bzy04gbvmpp0nhfyf8rvynhr2c4alqva9x3yi"; depends=[checkmate fs parallelMap ParamHelpers smoof]; broken = true; }; rawr = derive2 { name="rawr"; version="0.1.3"; sha256="0k0x1pmxs73j6dmjg33n4hhwjwzpnhzbmmmjza6kw7hj6lfmipx4"; depends=[clipr dplyr jsonlite rvest stringr xml2]; broken = true; }; rdaemon = derive2 { name="rdaemon"; version="1.0.6"; sha256="1qr6v7kgk9nd5qp96667x51331xmpp1yz1r190dgd1fqigw735s5"; depends=[base64enc futile_logger Rcpp]; broken = true; }; + resemble = derive2 { name="resemble"; version="2.0.0"; sha256="1vr4aydwyipspkw662qw50219r30ms05i567j66yv1ccs574dw6a"; depends=[data_table foreach iterators lifecycle magrittr mathjaxr Rcpp RcppArmadillo]; broken = true; }; + retrocombinator = derive2 { name="retrocombinator"; version="1.0.0"; sha256="0ci5cm9ml2gsn0n0scaahpfi8kyn6i0s3fb4mn7m9s83c0ls6xgv"; depends=[dplyr ggplot2 magrittr Rcpp rlang]; broken = true; }; rgho = derive2 { name="rgho"; version="2.0.1"; sha256="1byvq2swn2j9v0zy5smjklv7bkncrclhli62cf1f2wiah5qg8sv2"; depends=[curl dplyr httr jsonlite lazyeval magrittr memoise readr rlang tibble tidyr]; broken = true; }; rijkspalette = derive2 { name="rijkspalette"; version="1.0.2"; sha256="00726q8s36si08ghd9sgi7ikadcj11xqwhgv8f3cml6lvwz7ppzz"; depends=[crayon imager jsonlite]; broken = true; }; + rnetcarto = derive2 { name="rnetcarto"; version="0.2.4"; sha256="0fk5rym6zp049bl1f7bkl2231mjh3pgnxn0nhvmzpsah08rh4rr6"; depends=[]; broken = true; }; + safedata = derive2 { name="safedata"; version="1.0.9"; sha256="0xcpgh4898rqdnnxx21vyxc8aqlwg26aywr591sllasrv1jzsmrc"; depends=[chron curl igraph jsonlite readxl sf]; broken = true; }; sara4r = derive2 { name="sara4r"; version="0.0.8"; sha256="0b8ir25f0348pd2ckwzv1pyz3iz98zy09baih3rkgxxn8hjdnxj7"; depends=[raster rgdal RGtk2 sp]; broken = true; }; seedwater = derive2 { name="seedwater"; version="2.0"; sha256="1q6q612245hqqx89jzlp77f73vj2baxi0bghd9l8kpjz4ydh6rv8"; depends=[rpanel]; broken = true; }; shinyypr = derive2 { name="shinyypr"; version="0.0.2"; sha256="1k6jsw6gnpwk90hkpa9grki0b68cab57vbd0h6ldjqr11giwcz8z"; depends=[bsplus chk dplyr DT ggplot2 lifecycle magrittr purrr readr shiny shinyjs waiter ypr]; broken = true; }; simLife = derive2 { name="simLife"; version="0.5.2"; sha256="1dhrjszfgxr0j4dkc2bwykyj515ji5rkb572nmnyjgkyi652j01v"; depends=[splancs]; broken = true; }; simba = derive2 { name="simba"; version="0.3-5"; sha256="14kqxqavacckl5s1518iiwzrmlgbxz1lxy33y8c9qq7xaln41g9h"; depends=[vegan]; broken = true; }; - sitreeE = derive2 { name="sitreeE"; version="0.0-7"; sha256="07x7p0rqkmjlf6lykx9ckh9dbwjqjkmszrhar1vmpy54i8gv3ha7"; depends=[data_table sitree]; broken = true; }; slga = derive2 { name="slga"; version="1.2.0"; sha256="0n96vqczpzc51ln2nraxz0846amasfbm541sy0wf0dsng283mh13"; depends=[httr raster s2 sf xml2]; broken = true; }; smartR = derive2 { name="smartR"; version="0.62.3"; sha256="0ardb4arhr7qmr30b3ahf7hkwlys9i420bm8h2688phahgfkk0y8"; depends=[caret chron cluster foreign ggplot2 ggrepel ggthemes gridExtra gstat gsubfn gWidgets2 gWidgets2RGtk2 igraph jpeg jsonlite lattice mapdata mapproj maps maptools marmap mtsdi nnls PBSmapping plyr R6 RColorBrewer reshape2 rgdal rgeos rjags ROCR rpart scales shape sp spdep sqldf vegan]; broken = true; }; soilphysics = derive2 { name="soilphysics"; version="4.0"; sha256="0b4fkc1plmafjdlad7s4pvca6lafmrswwpfddvsh73734s7cslmq"; depends=[boot fields MASS shiny shinydashboard]; broken = true; }; spANOVA = derive2 { name="spANOVA"; version="0.99.3"; sha256="0w817zwbk6amh3n3j8wzjr15qqhfbk9s23c77b27iwcc5akdgbix"; depends=[ape car DT geoR gtools knitr MASS Matrix multcomp multcompView mvtnorm rmarkdown ScottKnott shiny shinyBS shinycssloaders shinythemes spatialreg spdep xtable]; broken = true; }; spate = derive2 { name="spate"; version="1.7"; sha256="1cr5jjrycfj9larsqgzfakk4qgfz8m5djg4ddzk6s3lg2iw06y43"; depends=[mvtnorm truncnorm]; broken = true; }; + spatialfusion = derive2 { name="spatialfusion"; version="0.6-4"; sha256="18ji1pps5kb0mbff620mw7zm6nzyy3nfclmcpl677xd9927apvn9"; depends=[fields Rcpp rstan SDraw sp]; broken = true; }; spfilteR = derive2 { name="spfilteR"; version="1.1.1"; sha256="0y6jmg4iz584c35r6xs16z8zbs2z5y8g6wshnall7i6g2hv35nnj"; depends=[]; broken = true; }; spsann = derive2 { name="spsann"; version="2.2.0"; sha256="00nlrwk50ch128brzvfxld0pcpq1syks9rvwdrcf1i2pcxnva7d0"; depends=[pedometrics Rcpp sp SpatialTools]; broken = true; }; stratifyR = derive2 { name="stratifyR"; version="1.0-2"; sha256="10qlxkdbym206bvl2wc8ig00fvj1n7553vmjk6rs2n4p945qd47g"; depends=[actuar fitdistrplus mc2d triangle zipfR]; broken = true; }; + subtee = derive2 { name="subtee"; version="1.0.0"; sha256="09ah1n3whdycygbi1a6pwgm5jqs1srd565p3ihkk5ygp4gl2r3z9"; depends=[ggplot2 MASS matrixStats survival]; broken = true; }; supc = derive2 { name="supc"; version="0.2.5"; sha256="1qj7a1zcj3mf0a40anifjyq851yjksygrpj4vsf0dm4yfwl5viwx"; depends=[BH Rcpp]; broken = true; }; survRatio = derive2 { name="survRatio"; version="0.1"; sha256="1xrqin3q3b7r8ga4i71ci97rsm4lj5ffd0720n7s563jkpnpyb9l"; depends=[ggplot2 ggpubr gridExtra survival]; broken = true; }; tabulizer = derive2 { name="tabulizer"; version="0.2.2"; sha256="0zd5cfqwgirqchw1mvziscxvzl8pb1y6rbfywkn9i9pxfydkm5vi"; depends=[png rJava tabulizerjars]; broken = true; }; tabulizerjars = derive2 { name="tabulizerjars"; version="1.0.1"; sha256="005n2gyzzmq8h0mpj8xs6ri6llzwag7nqzpm4vnzp81vwy8kmf92"; depends=[rJava]; broken = true; }; thectar = derive2 { name="thectar"; version="1.0.0"; sha256="1qh0qzg0ybb38kzm56xxlvhm201pdjm16aky5f1fdflcsszgy8mx"; depends=[proxy smacof]; broken = true; }; txshift = derive2 { name="txshift"; version="0.3.6"; sha256="16ffkzgy9x1ng6338mb4flg3xy3cc32lrhqmb7rgpzs2fb0h20zr"; depends=[assertthat data_table ggplot2 hal9001 haldensify latex2exp lspline mvtnorm Rdpack scales stringr]; broken = true; }; + uFTIR = derive2 { name="uFTIR"; version="0.1.4"; sha256="1blgwn6i0dadmr7vml6rbniv103mgr9hgx2dwgcxbagfyv00ah24"; depends=[raster Rcpp RcppArmadillo sp]; broken = true; }; unfoldr = derive2 { name="unfoldr"; version="0.7.1"; sha256="1khas7d04g4y2kwldnsja5xk1n5mys2s66pln3l0gqlsbk67na12"; depends=[]; broken = true; }; usethis2 = derive2 { name="usethis2"; version="0.2.0"; sha256="0ljvfgwg73y71yvyz2pp4c1rzgiqk1x7kmgswxa1ay05zwdgyi0x"; depends=[microservices purrr usethis withr]; broken = true; }; viewshed3d = derive2 { name="viewshed3d"; version="4.0.0"; sha256="039xx39w3k3hckf0qci7j1364s47vja5s18siqjh6c5yy1w8q737"; depends=[data_table hyper_fit lidR nabor pkgcond plotrix pracma raster rgl sp viridis]; broken = true; }; From e4a127c171a5a7878f7ee68b62eda4009fa944b3 Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Thu, 2 Dec 2021 13:20:21 +1100 Subject: [PATCH 015/278] rPackages: allow overriding of platforms --- pkgs/development/r-modules/default.nix | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index a88f9635793b..7924d4724882 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -15,7 +15,7 @@ let # # some packages, e.g. cncaGUI, require X running while installation, # so that we use xvfb-run if requireX is true. - mkDerive = {mkHomepage, mkUrls, hydraPlatforms ? R.meta.platforms}: args: + mkDerive = {mkHomepage, mkUrls, hydraPlatforms ? null}: args: let hydraPlatforms' = hydraPlatforms; in lib.makeOverridable ({ name, version, sha256, @@ -23,7 +23,8 @@ let doCheck ? true, requireX ? false, broken ? false, - hydraPlatforms ? hydraPlatforms', + platforms ? R.meta.platforms, + hydraPlatforms ? if hydraPlatforms' != null then hydraPlatforms' else platforms, maintainers ? [] }: buildRPackage { name = "${name}-${version}"; @@ -35,7 +36,7 @@ let propagatedBuildInputs = depends; nativeBuildInputs = depends; meta.homepage = mkHomepage (args // { inherit name; }); - meta.platforms = R.meta.platforms; + meta.platforms = platforms; meta.hydraPlatforms = hydraPlatforms; meta.broken = broken; meta.maintainers = maintainers; From c520de648ba5df38620d0b8212bfb66e7cfcd53b Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Thu, 2 Dec 2021 13:20:51 +1100 Subject: [PATCH 016/278] rPackages.Rrdrand: restrict to x86 architecture --- pkgs/development/r-modules/default.nix | 2 ++ 1 file changed, 2 insertions(+) diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index 7924d4724882..efd205152a0f 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -1281,6 +1281,8 @@ let rgl = old.rgl.overrideDerivation (attrs: { RGL_USE_NULL = "true"; }); + + Rrdrand = old.Rrdrand.override { platforms = lib.platforms.x86_64 ++ lib.platforms.x86; }; }; in self From 08b77f388663dd611f3a872489dbf2ade0678d24 Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Thu, 2 Dec 2021 13:21:30 +1100 Subject: [PATCH 017/278] rPackages.RcppMeCab: fix build --- pkgs/development/r-modules/default.nix | 2 ++ 1 file changed, 2 insertions(+) diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index efd205152a0f..3ba20d6c2d80 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -489,6 +489,7 @@ let trackViewer = [ pkgs.zlib.dev ]; themetagenomics = [ pkgs.zlib.dev ]; NanoMethViz = [ pkgs.zlib.dev ]; + RcppMeCab = [ pkgs.pkg-config ]; }; packagesWithBuildInputs = { @@ -636,6 +637,7 @@ let PoissonBinomial = [ pkgs.fftw.dev ]; rrd = [ pkgs.rrdtool ]; flowWorkspace = [ pkgs.zlib.dev ]; + RcppMeCab = [ pkgs.mecab ]; }; packagesRequiringX = [ From 248f05a1204d53b631c0ac1fdd224d2bef9b035c Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Thu, 2 Dec 2021 13:21:55 +1100 Subject: [PATCH 018/278] rPackages.PING: fix build --- pkgs/development/r-modules/default.nix | 1 + 1 file changed, 1 insertion(+) diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index 3ba20d6c2d80..731b7a517f8c 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -638,6 +638,7 @@ let rrd = [ pkgs.rrdtool ]; flowWorkspace = [ pkgs.zlib.dev ]; RcppMeCab = [ pkgs.mecab ]; + PING = [ pkgs.gsl ]; }; packagesRequiringX = [ From 2d8306ef9d6d0d820a03b19f3fdd8c295e9901c8 Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Thu, 2 Dec 2021 13:22:17 +1100 Subject: [PATCH 019/278] rPackages.RcppAlgos: fix build --- pkgs/development/r-modules/default.nix | 1 + 1 file changed, 1 insertion(+) diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index 731b7a517f8c..8bb4b7bc1b99 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -639,6 +639,7 @@ let flowWorkspace = [ pkgs.zlib.dev ]; RcppMeCab = [ pkgs.mecab ]; PING = [ pkgs.gsl ]; + RcppAlgos = [ pkgs.gmp.dev ]; }; packagesRequiringX = [ From f223a2b84de408362a0d6d71fa4a54e595ff068b Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Thu, 2 Dec 2021 13:22:50 +1100 Subject: [PATCH 020/278] rPackages.RcppBigIntAlgos: fix build --- pkgs/development/r-modules/default.nix | 1 + 1 file changed, 1 insertion(+) diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index 8bb4b7bc1b99..0a4e7fde499d 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -640,6 +640,7 @@ let RcppMeCab = [ pkgs.mecab ]; PING = [ pkgs.gsl ]; RcppAlgos = [ pkgs.gmp.dev ]; + RcppBigIntAlgos = [ pkgs.gmp.dev ]; }; packagesRequiringX = [ From 10feaddf41b3a83a7eea16ef291cacde59757d76 Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Thu, 2 Dec 2021 13:23:16 +1100 Subject: [PATCH 021/278] rPackages.HilbertVisGUI: fix build --- pkgs/development/r-modules/default.nix | 2 ++ 1 file changed, 2 insertions(+) diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index 0a4e7fde499d..c0e918741487 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -490,6 +490,7 @@ let themetagenomics = [ pkgs.zlib.dev ]; NanoMethViz = [ pkgs.zlib.dev ]; RcppMeCab = [ pkgs.pkg-config ]; + HilbertVisGUI = with pkgs; [ pkg-config which ]; }; packagesWithBuildInputs = { @@ -641,6 +642,7 @@ let PING = [ pkgs.gsl ]; RcppAlgos = [ pkgs.gmp.dev ]; RcppBigIntAlgos = [ pkgs.gmp.dev ]; + HilbertVisGUI = [ pkgs.gnome2.gtkmm.dev ]; }; packagesRequiringX = [ From aa8c9a81836c40f69e3920d2ebea585525f85b92 Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Thu, 2 Dec 2021 13:23:34 +1100 Subject: [PATCH 022/278] rPackages.MatchIt: fix build patch no-longer applicable --- pkgs/development/r-modules/default.nix | 7 ------- 1 file changed, 7 deletions(-) diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index c0e918741487..b4e3770fdbd6 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -1238,13 +1238,6 @@ let ''; }); - MatchIt = old.MatchIt.overrideDerivation (attrs: { - patches = [ (pkgs.fetchpatch { - url = "https://github.com/kosukeimai/MatchIt/commit/8c15a1afa16b74eb04a45e7e46f8aca64ed89bcb.patch"; - sha256 = "sha256-3UI60n49xuX6LniHpTLOUSsHCEAQ7f1FMBVH0jNlW60="; - }) ]; - }); - h2o = old.h2o.overrideDerivation (attrs: { preConfigure = '' # prevent download of jar file during install and postpone to first use From 35fbf7a7093342df530c1ad6875ffa091505b5da Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Thu, 2 Dec 2021 13:24:05 +1100 Subject: [PATCH 023/278] rPackages.{HiveR,HIBAG}: mark broken --- pkgs/development/r-modules/default.nix | 2 ++ 1 file changed, 2 insertions(+) diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index b4e3770fdbd6..60d69c002bb9 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -897,6 +897,8 @@ let "x13binary" "valse" "HierO" + "HIBAG" + "HiveR" # Impure network access during build "waddR" From e2415dbb8f091ef8846a94f06ff72d075f0f912f Mon Sep 17 00:00:00 2001 From: talyz Date: Fri, 26 Nov 2021 13:54:45 +0100 Subject: [PATCH 024/278] discourse: 2.7.9 -> 2.8.0.beta9 Update to the latest beta, since upstream advocates for it. See https://github.com/NixOS/nixpkgs/issues/146308 for more info. --- nixos/modules/services/web-apps/discourse.nix | 8 +- .../discourse/auto_generated_path.patch | 4 +- pkgs/servers/web-apps/discourse/default.nix | 32 +- .../web-apps/discourse/rubyEnv/Gemfile | 45 +- .../web-apps/discourse/rubyEnv/Gemfile.lock | 269 ++++++----- .../web-apps/discourse/rubyEnv/gemset.nix | 450 ++++++++++-------- pkgs/servers/web-apps/discourse/update.py | 2 +- 7 files changed, 448 insertions(+), 362 deletions(-) diff --git a/nixos/modules/services/web-apps/discourse.nix b/nixos/modules/services/web-apps/discourse.nix index c4fb7e2b316f..1c7ffd59a596 100644 --- a/nixos/modules/services/web-apps/discourse.nix +++ b/nixos/modules/services/web-apps/discourse.nix @@ -621,12 +621,13 @@ in max_user_api_reqs_per_minute = 20; max_user_api_reqs_per_day = 2880; - max_admin_api_reqs_per_key_per_minute = 60; + max_admin_api_reqs_per_minute = 60; max_reqs_per_ip_per_minute = 200; max_reqs_per_ip_per_10_seconds = 50; max_asset_reqs_per_ip_per_10_seconds = 200; max_reqs_per_ip_mode = "block"; max_reqs_rate_limit_on_private = false; + skip_per_ip_rate_limit_trust_level = 1; force_anonymous_min_queue_seconds = 1; force_anonymous_min_per_10_seconds = 3; background_requests_max_queue_length = 0.5; @@ -646,6 +647,9 @@ in enable_email_sync_demon = false; max_digests_enqueued_per_30_mins_per_site = 10000; cluster_name = null; + multisite_config_path = "config/multisite.yml"; + enable_long_polling = null; + long_polling_interval = null; }; services.redis.enable = lib.mkDefault (cfg.redis.host == "localhost"); @@ -825,7 +829,7 @@ in appendHttpConfig = '' # inactive means we keep stuff around for 1440m minutes regardless of last access (1 week) - # levels means it is a 2 deep heirarchy cause we can have lots of files + # levels means it is a 2 deep hierarchy cause we can have lots of files # max_size limits the size of the cache proxy_cache_path /var/cache/nginx inactive=1440m levels=1:2 keys_zone=discourse:10m max_size=600m; diff --git a/pkgs/servers/web-apps/discourse/auto_generated_path.patch b/pkgs/servers/web-apps/discourse/auto_generated_path.patch index 9dcb1cb5595e..e63d4a283a74 100644 --- a/pkgs/servers/web-apps/discourse/auto_generated_path.patch +++ b/pkgs/servers/web-apps/discourse/auto_generated_path.patch @@ -1,8 +1,8 @@ diff --git a/lib/plugin/instance.rb b/lib/plugin/instance.rb -index 380a63e987..b2ce7fa982 100644 +index e59a6fbc05..c773a1356e 100644 --- a/lib/plugin/instance.rb +++ b/lib/plugin/instance.rb -@@ -403,7 +403,7 @@ class Plugin::Instance +@@ -447,7 +447,7 @@ class Plugin::Instance end def auto_generated_path diff --git a/pkgs/servers/web-apps/discourse/default.nix b/pkgs/servers/web-apps/discourse/default.nix index 9206d39a3466..62e9be80bcd9 100644 --- a/pkgs/servers/web-apps/discourse/default.nix +++ b/pkgs/servers/web-apps/discourse/default.nix @@ -1,22 +1,22 @@ { stdenv, pkgs, makeWrapper, runCommand, lib, writeShellScript , fetchFromGitHub, bundlerEnv, callPackage -, ruby, replace, gzip, gnutar, git, cacert, util-linux, gawk +, ruby, replace, gzip, gnutar, git, cacert, util-linux, gawk, nettools , imagemagick, optipng, pngquant, libjpeg, jpegoptim, gifsicle, jhead -, libpsl, redis, postgresql, which, brotli, procps, rsync -, nodePackages, v8 +, libpsl, redis, postgresql, which, brotli, procps, rsync, icu +, nodePackages, nodejs-16_x , plugins ? [] }@args: let - version = "2.7.9"; + version = "2.8.0.beta9"; src = fetchFromGitHub { owner = "discourse"; repo = "discourse"; rev = "v${version}"; - sha256 = "sha256-SOERjFbG4l/tUfOl51XEW0nVbza3L4adjiPhz4Hj0YU="; + sha256 = "sha256-cTedMbf0N50ysRQqA9Fm1WQmI5J5hsqDSi2JZIa49jg="; }; runtimeDeps = [ @@ -33,6 +33,7 @@ let procps # For ps and kill util-linux # For renice gawk + nettools # For hostname # Image optimization imagemagick @@ -110,16 +111,21 @@ let gems = import ./rubyEnv/gemset.nix; in gems // { + mini_racer = gems.mini_racer // { + buildInputs = [ icu ]; + dontBuild = false; + NIX_LDFLAGS = "-licui18n"; + }; libv8-node = let noopScript = writeShellScript "noop" "exit 0"; linkFiles = writeShellScript "link-files" '' cd ../.. - mkdir -p vendor/v8/out.gn/libv8/obj/ - ln -s "${v8}/lib/libv8.a" vendor/v8/out.gn/libv8/obj/libv8_monolith.a + mkdir -p vendor/v8/${stdenv.hostPlatform.system}/libv8/obj/ + ln -s "${nodejs-16_x.libv8}/lib/libv8.a" vendor/v8/${stdenv.hostPlatform.system}/libv8/obj/libv8_monolith.a - ln -s ${v8}/include vendor/v8/include + ln -s ${nodejs-16_x.libv8}/include vendor/v8/include mkdir -p ext/libv8-node echo '--- !ruby/object:Libv8::Node::Location::Vendor {}' >ext/libv8-node/.location.yml @@ -155,13 +161,9 @@ let pname = "discourse-assets"; inherit version src; - nativeBuildInputs = [ - rubyEnv.wrappedRuby + nativeBuildInputs = runtimeDeps ++ [ postgresql redis - which - brotli - procps nodePackages.uglify-js nodePackages.terser ]; @@ -255,10 +257,6 @@ let # one constructed by bundlerEnv ./plugin_gem_api_version.patch - # Use mv instead of rename, since rename doesn't work across - # device boundaries - ./use_mv_instead_of_rename.patch - # Change the path to the auto generated plugin assets, which # defaults to the plugin's directory and isn't writable at the # time of asset generation diff --git a/pkgs/servers/web-apps/discourse/rubyEnv/Gemfile b/pkgs/servers/web-apps/discourse/rubyEnv/Gemfile index 71ee3f910c0e..9cdfbf21a9d8 100644 --- a/pkgs/servers/web-apps/discourse/rubyEnv/Gemfile +++ b/pkgs/servers/web-apps/discourse/rubyEnv/Gemfile @@ -18,13 +18,14 @@ else # this allows us to include the bits of rails we use without pieces we do not. # # To issue a rails update bump the version number here - gem 'actionmailer', '6.1.3.2' - gem 'actionpack', '6.1.3.2' - gem 'actionview', '6.1.3.2' - gem 'activemodel', '6.1.3.2' - gem 'activerecord', '6.1.3.2' - gem 'activesupport', '6.1.3.2' - gem 'railties', '6.1.3.2' + rails_version = '6.1.4.1' + gem 'actionmailer', rails_version + gem 'actionpack', rails_version + gem 'actionview', rails_version + gem 'activemodel', rails_version + gem 'activerecord', rails_version + gem 'activesupport', rails_version + gem 'railties', rails_version gem 'sprockets-rails' end @@ -60,8 +61,6 @@ gem 'redis-namespace' # better maintained living fork gem 'active_model_serializers', '~> 0.8.3' -gem 'onebox' - gem 'http_accept_language', require: false # Ember related gems need to be pinned cause they control client side @@ -90,9 +89,7 @@ gem 'unf', require: false gem 'email_reply_trimmer' -# Forked until https://github.com/toy/image_optim/pull/162 is merged -# https://github.com/discourse/image_optim -gem 'discourse_image_optim', require: 'image_optim' +gem 'image_optim' gem 'multi_json' gem 'mustache' gem 'nokogiri' @@ -108,7 +105,10 @@ gem 'omniauth-oauth2', require: false gem 'omniauth-google-oauth2' -gem 'oj' +# Pinning oj until https://github.com/ohler55/oj/issues/699 is resolved. +# Segfaults and stuck processes after upgrading. +gem 'oj', '3.13.2' + gem 'pg' gem 'mini_sql' gem 'pry-rails', require: false @@ -169,6 +169,8 @@ group :test, :development do gem 'parallel_tests' gem 'rswag-specs' + + gem 'annotate' end group :development do @@ -177,8 +179,16 @@ group :development do gem 'better_errors', platform: :mri, require: !!ENV['BETTER_ERRORS'] gem 'binding_of_caller' gem 'yaml-lint' - gem 'annotate' - gem 'discourse_dev' +end + +if ENV["ALLOW_DEV_POPULATE"] == "1" + gem 'discourse_dev_assets' + gem 'faker', "~> 2.16" +else + group :development do + gem 'discourse_dev_assets' + gem 'faker', "~> 2.16" + end end # this is an optional gem, it provides a high performance replacement @@ -205,6 +215,9 @@ gem 'gc_tracer', require: false, platform: :mri # required for feed importing and embedding gem 'ruby-readability', require: false +# rss gem is a bundled gem from Ruby 3 onwards +gem 'rss', require: false + gem 'stackprof', require: false, platform: :mri gem 'memory_profiler', require: false, platform: :mri @@ -231,6 +244,8 @@ gem 'sshkey', require: false gem 'rchardet', require: false gem 'lz4-ruby', require: false, platform: :ruby +gem 'sanitize' + if ENV["IMPORT"] == "1" gem 'mysql2' gem 'redcarpet' diff --git a/pkgs/servers/web-apps/discourse/rubyEnv/Gemfile.lock b/pkgs/servers/web-apps/discourse/rubyEnv/Gemfile.lock index 0b83d3483392..3a3217224cf6 100644 --- a/pkgs/servers/web-apps/discourse/rubyEnv/Gemfile.lock +++ b/pkgs/servers/web-apps/discourse/rubyEnv/Gemfile.lock @@ -8,22 +8,22 @@ GIT GEM remote: https://rubygems.org/ specs: - actionmailer (6.1.3.2) - actionpack (= 6.1.3.2) - actionview (= 6.1.3.2) - activejob (= 6.1.3.2) - activesupport (= 6.1.3.2) + actionmailer (6.1.4.1) + actionpack (= 6.1.4.1) + actionview (= 6.1.4.1) + activejob (= 6.1.4.1) + activesupport (= 6.1.4.1) mail (~> 2.5, >= 2.5.4) rails-dom-testing (~> 2.0) - actionpack (6.1.3.2) - actionview (= 6.1.3.2) - activesupport (= 6.1.3.2) + actionpack (6.1.4.1) + actionview (= 6.1.4.1) + activesupport (= 6.1.4.1) rack (~> 2.0, >= 2.0.9) rack-test (>= 0.6.3) rails-dom-testing (~> 2.0) rails-html-sanitizer (~> 1.0, >= 1.2.0) - actionview (6.1.3.2) - activesupport (= 6.1.3.2) + actionview (6.1.4.1) + activesupport (= 6.1.4.1) builder (~> 3.1) erubi (~> 1.4) rails-dom-testing (~> 2.0) @@ -32,21 +32,21 @@ GEM actionview (>= 6.0.a) active_model_serializers (0.8.4) activemodel (>= 3.0) - activejob (6.1.3.2) - activesupport (= 6.1.3.2) + activejob (6.1.4.1) + activesupport (= 6.1.4.1) globalid (>= 0.3.6) - activemodel (6.1.3.2) - activesupport (= 6.1.3.2) - activerecord (6.1.3.2) - activemodel (= 6.1.3.2) - activesupport (= 6.1.3.2) - activesupport (6.1.3.2) + activemodel (6.1.4.1) + activesupport (= 6.1.4.1) + activerecord (6.1.4.1) + activemodel (= 6.1.4.1) + activesupport (= 6.1.4.1) + activesupport (6.1.4.1) concurrent-ruby (~> 1.0, >= 1.0.2) i18n (>= 1.6, < 2) minitest (>= 5.1) tzinfo (~> 2.0) zeitwerk (~> 2.3) - addressable (2.7.0) + addressable (2.8.0) public_suffix (>= 2.0.2, < 5.0) annotate (3.1.1) activerecord (>= 3.2, < 7.0) @@ -59,10 +59,10 @@ GEM aws-partitions (~> 1, >= 1.239.0) aws-sigv4 (~> 1.1) jmespath (~> 1.0) - aws-sdk-kms (1.42.0) + aws-sdk-kms (1.44.0) aws-sdk-core (~> 3, >= 3.112.0) aws-sigv4 (~> 1.1) - aws-sdk-s3 (1.90.0) + aws-sdk-s3 (1.96.1) aws-sdk-core (~> 3, >= 3.112.0) aws-sdk-kms (~> 1) aws-sigv4 (~> 1.1) @@ -80,10 +80,10 @@ GEM rack (>= 0.9.0) binding_of_caller (1.0.0) debug_inspector (>= 0.0.1) - bootsnap (1.7.5) + bootsnap (1.9.3) msgpack (~> 1.0) builder (3.2.4) - bullet (6.1.4) + bullet (6.1.5) activesupport (>= 3.0.0) uniform_notifier (~> 1.11) byebug (11.1.3) @@ -92,7 +92,7 @@ GEM chunky_png (1.4.0) coderay (1.1.3) colored2 (3.1.2) - concurrent-ruby (1.1.8) + concurrent-ruby (1.1.9) connection_pool (2.2.5) cose (1.2.0) cbor (~> 0.5.9) @@ -101,7 +101,7 @@ GEM crack (0.4.5) rexml crass (1.0.6) - css_parser (1.9.0) + css_parser (1.10.0) addressable debug_inspector (1.1.0) diff-lcs (1.4.4) @@ -114,15 +114,10 @@ GEM jquery-rails (>= 1.0.17) railties (>= 3.1) discourse-ember-source (3.12.2.3) - discourse-fonts (0.0.8) - discourse_dev (0.2.1) + discourse-fonts (0.0.9) + discourse_dev_assets (0.0.3) faker (~> 2.16) - discourse_image_optim (0.26.2) - exifr (~> 1.2, >= 1.2.2) - fspath (~> 3.0) - image_size (~> 1.5) - in_threads (~> 1.3) - progress (~> 3.0, >= 3.0.1) + literate_randomizer docile (1.4.0) ecma-re-validator (0.3.0) regexp_parser (~> 2.0) @@ -134,30 +129,40 @@ GEM sprockets (>= 3.3, < 4.1) ember-source (2.18.2) erubi (1.10.0) - excon (0.81.0) + excon (0.88.0) execjs (2.8.1) exifr (1.3.9) fabrication (2.22.0) - faker (2.17.0) + faker (2.19.0) i18n (>= 1.6, < 2) fakeweb (1.3.0) - faraday (1.4.1) + faraday (1.8.0) + faraday-em_http (~> 1.0) + faraday-em_synchrony (~> 1.0) faraday-excon (~> 1.1) + faraday-httpclient (~> 1.0.1) faraday-net_http (~> 1.0) faraday-net_http_persistent (~> 1.1) + faraday-patron (~> 1.0) + faraday-rack (~> 1.0) multipart-post (>= 1.2, < 3) ruby2_keywords (>= 0.0.4) + faraday-em_http (1.0.0) + faraday-em_synchrony (1.0.0) faraday-excon (1.1.0) + faraday-httpclient (1.0.1) faraday-net_http (1.0.1) - faraday-net_http_persistent (1.1.0) - fast_blank (1.0.0) + faraday-net_http_persistent (1.2.0) + faraday-patron (1.0.0) + faraday-rack (1.0.0) + fast_blank (1.0.1) fast_xs (0.8.0) - fastimage (2.2.3) - ffi (1.15.0) + fastimage (2.2.5) + ffi (1.15.4) fspath (3.1.2) gc_tracer (1.5.1) - globalid (0.4.2) - activesupport (>= 4.2.0) + globalid (1.0.0) + activesupport (>= 5.0) guess_html_encoding (0.0.11) hana (1.3.7) hashdiff (1.0.1) @@ -166,16 +171,23 @@ GEM hkdf (0.3.0) htmlentities (4.3.4) http_accept_language (2.1.1) - i18n (1.8.10) + i18n (1.8.11) concurrent-ruby (~> 1.0) - image_size (1.5.0) + image_optim (0.31.1) + exifr (~> 1.2, >= 1.2.2) + fspath (~> 3.0) + image_size (>= 1.5, < 4) + in_threads (~> 1.3) + progress (~> 3.0, >= 3.0.1) + image_size (3.0.1) in_threads (1.5.4) + ipaddr (1.2.3) jmespath (1.4.0) jquery-rails (4.4.0) rails-dom-testing (>= 1, < 3) railties (>= 4.2.0) thor (>= 0.14, < 2.0) - json (2.5.1) + json (2.6.1) json-schema (2.8.1) addressable (>= 2.4) json_schemer (0.2.18) @@ -183,12 +195,14 @@ GEM hana (~> 1.3) regexp_parser (~> 2.0) uri_template (~> 0.7) - jwt (2.2.3) - kgio (2.11.3) - libv8-node (15.14.0.1) - listen (3.5.1) + jwt (2.3.0) + kgio (2.11.4) + libv8-node (16.10.0.0) + libv8-node (16.10.0.0-aarch64-linux) + listen (3.7.0) rb-fsevent (~> 0.10, >= 0.10.3) rb-inotify (~> 0.9, >= 0.9.10) + literate_randomizer (0.4.0) lograge (0.11.2) actionpack (>= 4) activesupport (>= 4) @@ -197,53 +211,51 @@ GEM logstash-event (1.2.02) logstash-logger (0.26.1) logstash-event (~> 1.2) - logster (2.9.6) - loofah (2.9.1) + logster (2.10.0) + loofah (2.12.0) crass (~> 1.0.2) nokogiri (>= 1.5.9) lru_redux (1.1.0) lz4-ruby (0.3.3) maxminddb (0.1.22) memory_profiler (1.0.0) - message_bus (3.3.5) + message_bus (3.3.6) rack (>= 1.1.3) method_source (1.0.0) - mini_mime (1.1.0) - mini_portile2 (2.5.3) - mini_racer (0.4.0) - libv8-node (~> 15.14.0.0) + mini_mime (1.1.2) + mini_portile2 (2.6.1) + mini_racer (0.5.0) + libv8-node (~> 16.10.0.0) mini_scheduler (0.13.0) sidekiq (>= 4.2.3) mini_sql (1.1.3) mini_suffix (0.3.2) ffi (~> 1.9) minitest (5.14.4) - mocha (1.12.0) - mock_redis (0.28.0) + mocha (1.13.0) + mock_redis (0.29.0) ruby2_keywords msgpack (1.4.2) multi_json (1.15.0) multi_xml (0.6.0) multipart-post (2.1.1) mustache (1.1.1) - nio4r (2.5.7) - nokogiri (1.11.7) - mini_portile2 (~> 2.5.0) + nio4r (2.5.8) + nokogiri (1.12.5) + mini_portile2 (~> 2.6.1) racc (~> 1.4) - nokogumbo (2.0.5) - nokogiri (~> 1.8, >= 1.8.4) - oauth (0.5.6) + oauth (0.5.8) oauth2 (1.4.7) faraday (>= 0.8, < 2.0) jwt (>= 1.0, < 3.0) multi_json (~> 1.3) multi_xml (~> 0.5) rack (>= 1.2, < 3) - oj (3.11.5) + oj (3.13.2) omniauth (1.9.1) hashie (>= 3.4.6) rack (>= 1.6.2, < 3) - omniauth-facebook (8.0.0) + omniauth-facebook (9.0.0) omniauth-oauth2 (~> 1.2) omniauth-github (1.4.0) omniauth (~> 1.5) @@ -256,27 +268,21 @@ GEM omniauth-oauth (1.2.0) oauth omniauth (>= 1.0, < 3) - omniauth-oauth2 (1.7.1) + omniauth-oauth2 (1.7.2) oauth2 (~> 1.4) omniauth (>= 1.9, < 3) omniauth-twitter (1.4.0) omniauth-oauth (~> 1.1) rack - onebox (2.2.17) - addressable (~> 2.7.0) - htmlentities (~> 4.3) - multi_json (~> 1.11) - mustache - nokogiri (~> 1.7) - sanitize - openssl (2.2.0) + openssl (2.2.1) + ipaddr openssl-signature_algorithm (1.1.1) openssl (~> 2.0) optimist (3.0.1) - parallel (1.20.1) - parallel_tests (3.7.0) + parallel (1.21.0) + parallel_tests (3.7.3) parallel - parser (3.0.1.1) + parser (3.0.3.1) ast (~> 2.4.1) pg (1.2.3) progress (3.6.0) @@ -289,12 +295,12 @@ GEM pry-rails (0.3.9) pry (>= 0.10.4) public_suffix (4.0.6) - puma (5.3.1) + puma (5.5.2) nio4r (~> 2.0) r2 (0.2.7) - racc (1.5.2) + racc (1.6.0) rack (2.2.3) - rack-mini-profiler (2.3.2) + rack-mini-profiler (2.3.3) rack (>= 1.2.0) rack-protection (2.1.0) rack @@ -303,24 +309,24 @@ GEM rails-dom-testing (2.0.3) activesupport (>= 4.2.0) nokogiri (>= 1.6) - rails-html-sanitizer (1.3.0) + rails-html-sanitizer (1.4.2) loofah (~> 2.3) rails_failover (0.7.3) activerecord (~> 6.0) concurrent-ruby railties (~> 6.0) - rails_multisite (3.0.0) + rails_multisite (4.0.0) activerecord (> 5.0, < 7) railties (> 5.0, < 7) - railties (6.1.3.2) - actionpack (= 6.1.3.2) - activesupport (= 6.1.3.2) + railties (6.1.4.1) + actionpack (= 6.1.4.1) + activesupport (= 6.1.4.1) method_source - rake (>= 0.8.7) + rake (>= 0.13) thor (~> 1.0) rainbow (3.0.0) - raindrops (0.19.1) - rake (13.0.3) + raindrops (0.19.2) + rake (13.0.6) rb-fsevent (0.11.0) rb-inotify (0.10.1) ffi (~> 1.0) @@ -329,7 +335,7 @@ GEM msgpack (>= 0.4.3) optimist (>= 3.0.0) rchardet (1.8.0) - redis (4.2.5) + redis (4.5.1) redis-namespace (1.8.1) redis (>= 3.0.4) regexp_parser (2.1.1) @@ -338,10 +344,10 @@ GEM rexml (3.2.5) rinku (2.0.6) rotp (6.2.0) - rqrcode (2.0.0) + rqrcode (2.1.0) chunky_png (~> 1.0) rqrcode_core (~> 1.0) - rqrcode_core (1.0.0) + rqrcode_core (1.2.0) rspec (3.10.0) rspec-core (~> 3.10.0) rspec-expectations (~> 3.10.0) @@ -357,7 +363,7 @@ GEM rspec-mocks (3.10.2) diff-lcs (>= 1.2.0, < 2.0) rspec-support (~> 3.10.0) - rspec-rails (5.0.1) + rspec-rails (5.0.2) actionpack (>= 5.2) activesupport (>= 5.2) railties (>= 5.2) @@ -365,40 +371,40 @@ GEM rspec-expectations (~> 3.10) rspec-mocks (~> 3.10) rspec-support (~> 3.10) - rspec-support (3.10.2) + rspec-support (3.10.3) + rss (0.2.9) + rexml rswag-specs (2.4.0) activesupport (>= 3.1, < 7.0) json-schema (~> 2.2) railties (>= 3.1, < 7.0) rtlit (0.0.5) - rubocop (1.14.0) + rubocop (1.23.0) parallel (~> 1.10) parser (>= 3.0.0.0) rainbow (>= 2.2.2, < 4.0) regexp_parser (>= 1.8, < 3.0) rexml - rubocop-ast (>= 1.5.0, < 2.0) + rubocop-ast (>= 1.12.0, < 2.0) ruby-progressbar (~> 1.7) unicode-display_width (>= 1.4.0, < 3.0) - rubocop-ast (1.5.0) + rubocop-ast (1.13.0) parser (>= 3.0.1.1) - rubocop-discourse (2.4.1) + rubocop-discourse (2.4.2) rubocop (>= 1.1.0) rubocop-rspec (>= 2.0.0) - rubocop-rspec (2.3.0) - rubocop (~> 1.0) - rubocop-ast (>= 1.1.0) + rubocop-rspec (2.6.0) + rubocop (~> 1.19) ruby-prof (1.4.3) ruby-progressbar (1.11.0) ruby-readability (0.7.0) guess_html_encoding (>= 0.0.4) nokogiri (>= 1.6.0) - ruby2_keywords (0.0.4) - rubyzip (2.3.0) - sanitize (5.2.3) + ruby2_keywords (0.0.5) + rubyzip (2.3.2) + sanitize (6.0.0) crass (~> 1.0.2) - nokogiri (>= 1.8.0) - nokogumbo (~> 2.0) + nokogiri (>= 1.12.0) sassc (2.0.1) ffi (~> 1.9) rake @@ -411,9 +417,9 @@ GEM seed-fu (2.3.9) activerecord (>= 3.1) activesupport (>= 3.1) - shoulda-matchers (4.5.1) - activesupport (>= 4.2.0) - sidekiq (6.2.1) + shoulda-matchers (5.0.0) + activesupport (>= 5.2.0) + sidekiq (6.3.1) connection_pool (>= 2.2.2) rack (~> 2.0) redis (>= 4.2.0) @@ -426,13 +432,13 @@ GEM sprockets (3.7.2) concurrent-ruby (~> 1.0) rack (> 1, < 3) - sprockets-rails (3.2.2) - actionpack (>= 4.0) - activesupport (>= 4.0) + sprockets-rails (3.4.1) + actionpack (>= 5.2) + activesupport (>= 5.2) sprockets (>= 3.0.0) sshkey (2.0.0) stackprof (0.2.17) - test-prof (1.0.5) + test-prof (1.0.7) thor (1.1.0) tilt (2.0.10) tzinfo (2.0.4) @@ -441,15 +447,15 @@ GEM execjs (>= 0.3.0, < 3) unf (0.1.4) unf_ext - unf_ext (0.0.7.7) - unicode-display_width (2.0.0) + unf_ext (0.0.8) + unicode-display_width (2.1.0) unicorn (6.0.0) kgio (~> 2.6) raindrops (~> 0.7) uniform_notifier (1.14.2) uri_template (0.7.0) - webmock (3.12.2) - addressable (>= 2.3.6) + webmock (3.14.0) + addressable (>= 2.8.0) crack (>= 0.3.2) hashdiff (>= 0.4.0, < 2.0.0) webpush (1.1.0) @@ -457,20 +463,21 @@ GEM jwt (~> 2.0) xorcist (1.1.2) yaml-lint (0.0.10) - zeitwerk (2.4.2) + zeitwerk (2.5.1) PLATFORMS + aarch64-linux ruby DEPENDENCIES - actionmailer (= 6.1.3.2) - actionpack (= 6.1.3.2) - actionview (= 6.1.3.2) + actionmailer (= 6.1.4.1) + actionpack (= 6.1.4.1) + actionview (= 6.1.4.1) actionview_precompiler active_model_serializers (~> 0.8.3) - activemodel (= 6.1.3.2) - activerecord (= 6.1.3.2) - activesupport (= 6.1.3.2) + activemodel (= 6.1.4.1) + activerecord (= 6.1.4.1) + activesupport (= 6.1.4.1) addressable annotate aws-sdk-s3 @@ -491,13 +498,13 @@ DEPENDENCIES discourse-ember-rails (= 0.18.6) discourse-ember-source (~> 3.12.2) discourse-fonts - discourse_dev - discourse_image_optim + discourse_dev_assets email_reply_trimmer ember-handlebars-template (= 0.8.0) excon execjs fabrication + faker (~> 2.16) fakeweb fast_blank fast_xs @@ -506,6 +513,7 @@ DEPENDENCIES highline htmlentities http_accept_language + image_optim json json_schemer listen @@ -531,14 +539,13 @@ DEPENDENCIES multi_json mustache nokogiri - oj + oj (= 3.13.2) omniauth omniauth-facebook omniauth-github omniauth-google-oauth2 omniauth-oauth2 omniauth-twitter - onebox parallel_tests pg pry-byebug @@ -550,7 +557,7 @@ DEPENDENCIES rack-protection rails_failover rails_multisite - railties (= 6.1.3.2) + railties (= 6.1.4.1) rake rb-fsevent rbtrace @@ -563,12 +570,14 @@ DEPENDENCIES rspec rspec-html-matchers rspec-rails + rss rswag-specs rtlit rubocop-discourse ruby-prof ruby-readability rubyzip + sanitize sassc (= 2.0.1) sassc-rails seed-fu @@ -590,4 +599,4 @@ DEPENDENCIES yaml-lint BUNDLED WITH - 2.2.24 + 2.2.26 diff --git a/pkgs/servers/web-apps/discourse/rubyEnv/gemset.nix b/pkgs/servers/web-apps/discourse/rubyEnv/gemset.nix index f63b68164ef2..7ee104f66745 100644 --- a/pkgs/servers/web-apps/discourse/rubyEnv/gemset.nix +++ b/pkgs/servers/web-apps/discourse/rubyEnv/gemset.nix @@ -5,10 +5,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1nqdaykzgib8fsldkxdkw0w44jzz4grvb028crzg0qpwvv03g2wp"; + sha256 = "00s07l2ac5igch1g2rpa0linmiq7mhgk6v6wxkckg8gbiqijb592"; type = "gem"; }; - version = "6.1.3.2"; + version = "6.1.4.1"; }; actionpack = { dependencies = ["actionview" "activesupport" "rack" "rack-test" "rails-dom-testing" "rails-html-sanitizer"]; @@ -16,10 +16,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1wdgv5llgbl4nayx5j78lfvhhjssrzfmypb45mjy37mgm8z5l5m5"; + sha256 = "0xgysqnibjsy6kdz10x2xb3kwa6lssiqhh0zggrbgs31ypwhlpia"; type = "gem"; }; - version = "6.1.3.2"; + version = "6.1.4.1"; }; actionview = { dependencies = ["activesupport" "builder" "erubi" "rails-dom-testing" "rails-html-sanitizer"]; @@ -27,10 +27,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1r6db2g3fsrca1hp9kbyvjx9psipsxw0g306qharkcblxl8h1ysn"; + sha256 = "1yf4ic5kl324rs0raralpwx24s6hvvdzxfhinafylf8f3x7jj23z"; type = "gem"; }; - version = "6.1.3.2"; + version = "6.1.4.1"; }; actionview_precompiler = { dependencies = ["actionview"]; @@ -60,32 +60,32 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0p80rbahcxhxlkxgf4bh580hbifn9q4gr5g9fy8fd0z5g6gr9xxq"; + sha256 = "1q7c0i0kwarxgcbxk71wa9jnlg45grbxmhlrh7dk9bgcv7r7r7hn"; type = "gem"; }; - version = "6.1.3.2"; + version = "6.1.4.1"; }; activemodel = { dependencies = ["activesupport"]; - groups = ["default" "development"]; + groups = ["default" "development" "test"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1gpd3hh4ryyr84drj6m0b5sy6929nyf50bfgksw1hpc594542nal"; + sha256 = "16ixam4lni8b5lgx0whnax0imzh1dh10fy5r9pxs52n83yz5nbq3"; type = "gem"; }; - version = "6.1.3.2"; + version = "6.1.4.1"; }; activerecord = { dependencies = ["activemodel" "activesupport"]; - groups = ["default" "development"]; + groups = ["default" "development" "test"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0fg58qma2zgrz0gr61p61qcz8c3h88fd5lbdrkpkm96aq5shwh68"; + sha256 = "1ccgvlj767ybps3pxlaa4iw77n7wbriw2sr8754id3ngjfap08ja"; type = "gem"; }; - version = "6.1.3.2"; + version = "6.1.4.1"; }; activesupport = { dependencies = ["concurrent-ruby" "i18n" "minitest" "tzinfo" "zeitwerk"]; @@ -93,10 +93,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1csxddyhl6k773ycxjvmyshyr4g9jb1icbs3pnm7crnavqs4h1yr"; + sha256 = "19gx1jcq46x9d1pi1w8xq0bgvvfw239y4lalr8asm291gj3q3ds4"; type = "gem"; }; - version = "6.1.3.2"; + version = "6.1.4.1"; }; addressable = { dependencies = ["public_suffix"]; @@ -104,10 +104,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1fvchp2rhp2rmigx7qglf69xvjqvzq7x0g49naliw29r2bz656sy"; + sha256 = "022r3m9wdxljpbya69y2i3h9g3dhhfaqzidf95m6qjzms792jvgp"; type = "gem"; }; - version = "2.7.0"; + version = "2.8.0"; }; annotate = { dependencies = ["activerecord" "rake"]; @@ -167,10 +167,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "00wgf83cdy6z77b2y0ld0aqiidfyldi71hx0z8b73gxjdlbwpq1i"; + sha256 = "0407yggwsy89fzh387vq3af5azplci5v0a8y97h7r6da4jrv1ksm"; type = "gem"; }; - version = "1.42.0"; + version = "1.44.0"; }; aws-sdk-s3 = { dependencies = ["aws-sdk-core" "aws-sdk-kms" "aws-sigv4"]; @@ -178,10 +178,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0sm1x1pm2wb8gj3p4yv45r7n8m4k3qawk3lrnd2lvk2vg5nyfh61"; + sha256 = "0q28bdmpm2c2fw9wh00zhqxnb8p2nzdfi5l6wwa6bl63fm28816h"; type = "gem"; }; - version = "1.90.0"; + version = "1.96.1"; }; aws-sdk-sns = { dependencies = ["aws-sdk-core" "aws-sigv4"]; @@ -252,10 +252,10 @@ }]; source = { remotes = ["https://rubygems.org"]; - sha256 = "12n09iwpssnsfw9s140ynfxr9psd0xcfx42yqdsk0hq60zhq2nlx"; + sha256 = "18prmylz53gsw651f0sibb2mvdxgd2zzdzh6a9a1idpqhyxcnbg7"; type = "gem"; }; - version = "1.7.5"; + version = "1.9.3"; }; builder = { groups = ["default" "development" "test"]; @@ -273,10 +273,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0r8d3vh1xjfx46qlv75228rkshzgqxpmf491vxzpicpqi1xad5ni"; + sha256 = "01xachwsyykmp153514vz2khanbsz1n27j09za5gcxj54srh5l4p"; type = "gem"; }; - version = "6.1.4"; + version = "6.1.5"; }; byebug = { groups = ["development" "test"]; @@ -351,10 +351,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0mr23wq0szj52xnj0zcn1k0c7j4v79wlwbijkpfcscqww3l6jlg3"; + sha256 = "0nwad3211p7yv9sda31jmbyw6sdafzmdi2i2niaz6f0wk5nq9h0f"; type = "gem"; }; - version = "1.1.8"; + version = "1.1.9"; }; connection_pool = { groups = ["default"]; @@ -414,10 +414,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0xs4ind9xd099rb52b73pch8ha143dl8bhivqsbba4wrvxpbx751"; + sha256 = "1q8gj3wkc2mbzsqw5zcsr3kyzrrb2pda03pi769rjbvqr94g3bm5"; type = "gem"; }; - version = "1.9.0"; + version = "1.10.0"; }; debug_inspector = { groups = ["default" "development"]; @@ -475,32 +475,21 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1gr1d80wmb1jvip82jlbsz5bcpwsz9lryxxfnwiw537vx8pqkk3p"; + sha256 = "1q1q9fmqc7dir2nj94nai58h26zsh6fqmbr6hfax5d6xpy4pm1yf"; type = "gem"; }; - version = "0.0.8"; + version = "0.0.9"; }; - discourse_dev = { - dependencies = ["faker"]; + discourse_dev_assets = { + dependencies = ["faker" "literate_randomizer"]; groups = ["development"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1sn2lcgjhsbqnaca97a37bfk249c55b3cn1q8abnf1am9jq5hdiw"; + sha256 = "0c6cxrf6kvv4pg6fsig71dn5nrzy7jxbxmyi8206m1ijgpj8nddg"; type = "gem"; }; - version = "0.2.1"; - }; - discourse_image_optim = { - dependencies = ["exifr" "fspath" "image_size" "in_threads" "progress"]; - groups = ["default"]; - platforms = []; - source = { - remotes = ["https://rubygems.org"]; - sha256 = "11nqmga5ygxyhjmsc07gsa0fwwyhdpwi20yyr4fnh263xs1xylvv"; - type = "gem"; - }; - version = "0.26.2"; + version = "0.0.3"; }; docile = { groups = ["default" "test"]; @@ -584,10 +573,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "19g5nvkycnkzqq4mqn1zjznq9adrlv2jz0dr9w10cbn42hhqpiz7"; + sha256 = "15yrwawhvkjvfg0dsf8z81876ddj6161q0wh5s7pw4sim8z8pspr"; type = "gem"; }; - version = "0.81.0"; + version = "0.88.0"; }; execjs = { groups = ["assets" "default"]; @@ -621,14 +610,14 @@ }; faker = { dependencies = ["i18n"]; - groups = ["default" "development"]; + groups = ["development"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0z3d4y6xg8prn3zdjw1qpqrnziq1d3zigqil4sxjj0pbr46gc1d6"; + sha256 = "0hb9wfxyb4ss2vl2mrj1zgdk7dh4yaxghq22gbx62yxj5yb9w4zw"; type = "gem"; }; - version = "2.17.0"; + version = "2.19.0"; }; fakeweb = { groups = ["test"]; @@ -641,15 +630,35 @@ version = "1.3.0"; }; faraday = { - dependencies = ["faraday-excon" "faraday-net_http" "faraday-net_http_persistent" "multipart-post" "ruby2_keywords"]; + dependencies = ["faraday-em_http" "faraday-em_synchrony" "faraday-excon" "faraday-httpclient" "faraday-net_http" "faraday-net_http_persistent" "faraday-patron" "faraday-rack" "multipart-post" "ruby2_keywords"]; groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0q646m07lfahakx5jdq77j004rcgfj6lkg13c0f84993gi78dhvi"; + sha256 = "0afhlqgby2cizcwgh7h2sq5f77q01axjbdl25bsvfwsry9n7gyyi"; type = "gem"; }; - version = "1.4.1"; + version = "1.8.0"; + }; + faraday-em_http = { + groups = ["default"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "12cnqpbak4vhikrh2cdn94assh3yxza8rq2p9w2j34bqg5q4qgbs"; + type = "gem"; + }; + version = "1.0.0"; + }; + faraday-em_synchrony = { + groups = ["default"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "1vgrbhkp83sngv6k4mii9f2s9v5lmp693hylfxp2ssfc60fas3a6"; + type = "gem"; + }; + version = "1.0.0"; }; faraday-excon = { groups = ["default"]; @@ -661,6 +670,16 @@ }; version = "1.1.0"; }; + faraday-httpclient = { + groups = ["default"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0fyk0jd3ks7fdn8nv3spnwjpzx2lmxmg2gh4inz3by1zjzqg33sc"; + type = "gem"; + }; + version = "1.0.1"; + }; faraday-net_http = { groups = ["default"]; platforms = []; @@ -676,10 +695,30 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0l2c835wl7gv34xp49fhd1bl4czkpw2g3ahqsak2251iqv5589ka"; + sha256 = "0dc36ih95qw3rlccffcb0vgxjhmipsvxhn6cw71l7ffs0f7vq30b"; type = "gem"; }; - version = "1.1.0"; + version = "1.2.0"; + }; + faraday-patron = { + groups = ["default"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "19wgsgfq0xkski1g7m96snv39la3zxz6x7nbdgiwhg5v82rxfb6w"; + type = "gem"; + }; + version = "1.0.0"; + }; + faraday-rack = { + groups = ["default"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "1h184g4vqql5jv9s9im6igy00jp6mrah2h14py6mpf9bkabfqq7g"; + type = "gem"; + }; + version = "1.0.0"; }; fast_blank = { groups = ["default"]; @@ -692,10 +731,10 @@ }]; source = { remotes = ["https://rubygems.org"]; - sha256 = "16s1ilyvwzmkcgmklbrn0c2pch5n02vf921njx0bld4crgdr6z56"; + sha256 = "1shpmamyzyhyxmv95r96ja5rylzaw60r19647d0fdm7y2h2c77r6"; type = "gem"; }; - version = "1.0.0"; + version = "1.0.1"; }; fast_xs = { groups = ["default"]; @@ -718,10 +757,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0lgr0vs9kg5622qaf2l3f37b238dncs037fisiygvkbq8sg11i68"; + sha256 = "05i1fgqy4l40niwm9y56d04f876sm0cvc7q3w2rpddf8gya4lcs9"; type = "gem"; }; - version = "2.2.3"; + version = "2.2.5"; }; ffi = { groups = ["default" "development" "test"]; @@ -732,10 +771,10 @@ }]; source = { remotes = ["https://rubygems.org"]; - sha256 = "0nq1fb3vbfylccwba64zblxy96qznxbys5900wd7gm9bpplmf432"; + sha256 = "0ssxcywmb3flxsjdg13is6k01807zgzasdhj4j48dm7ac59cmksn"; type = "gem"; }; - version = "1.15.0"; + version = "1.15.4"; }; fspath = { groups = ["default"]; @@ -767,10 +806,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1zkxndvck72bfw235bd9nl2ii0lvs5z88q14706cmn702ww2mxv1"; + sha256 = "1n5yc058i8xhi1fwcp1w7mfi6xaxfmrifdb4r4hjfff33ldn8lqj"; type = "gem"; }; - version = "0.4.2"; + version = "1.0.0"; }; guess_html_encoding = { groups = ["default"]; @@ -858,20 +897,31 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0g2fnag935zn2ggm5cn6k4s4xvv53v2givj1j90szmvavlpya96a"; + sha256 = "0vdd1kii40qhbr9n8qx71k2gskq6rkl8ygy8hw5hfj8bb5a364xf"; type = "gem"; }; - version = "1.8.10"; + version = "1.8.11"; + }; + image_optim = { + dependencies = ["exifr" "fspath" "image_size" "in_threads" "progress"]; + groups = ["default"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "1l3n59w1cbvfg2srfa14g3jdqwbkf7l86g4qrgfz3qps7zi0drg7"; + type = "gem"; + }; + version = "0.31.1"; }; image_size = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0zrn2mqaf1kk548wn1y35i1a6kwh3320q62m929kn9m8sqpy4fk7"; + sha256 = "130yn87pcnr5sblssm88hnvg8hc76isgrnhlf1d9355zhv4i2hsz"; type = "gem"; }; - version = "1.5.0"; + version = "3.0.1"; }; in_threads = { groups = ["default"]; @@ -883,6 +933,16 @@ }; version = "1.5.4"; }; + ipaddr = { + groups = ["default"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0s2cipiyhm1r8igc1n43py5p5r3rdz8lvagaa61jrm62prn7v5b2"; + type = "gem"; + }; + version = "1.2.3"; + }; jmespath = { groups = ["default"]; platforms = []; @@ -909,10 +969,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0lrirj0gw420kw71bjjlqkqhqbrplla61gbv1jzgsz6bv90qr3ci"; + sha256 = "1z9grvjyfz16ag55hg522d3q4dh07hf391sf9s96npc0vfi85xkz"; type = "gem"; }; - version = "2.5.1"; + version = "2.6.1"; }; json-schema = { dependencies = ["addressable"]; @@ -941,10 +1001,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "036i5fc09275ms49mw43mh4i9pwaap778ra2pmx06ipzyyjl6bfs"; + sha256 = "0bg8pjx0mpvl10k6d8a6gc8dzlv2z5jkqcjbjcirnk032iriq838"; type = "gem"; }; - version = "2.2.3"; + version = "2.3.0"; }; kgio = { groups = ["default"]; @@ -957,20 +1017,20 @@ }]; source = { remotes = ["https://rubygems.org"]; - sha256 = "0ai6bzlvxbzpdl466p1qi4dlhx8ri2wcrp6x1l19y3yfs3a29rng"; + sha256 = "1ipzvw7n0kz1w8rkqybyxvf3hb601a770khm0xdqm68mc4aa59xx"; type = "gem"; }; - version = "2.11.3"; + version = "2.11.4"; }; libv8-node = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1xx217hrkpcm41p41inmy05kb7g8p9w5fwabgjgmpvz0d60j2862"; + sha256 = "102ixp1626b4zjh98h3jxhwv0sdbkgijz38wyb1ffgxqr47c7s0w"; type = "gem"; }; - version = "15.14.0.1"; + version = "16.10.0.0"; }; listen = { dependencies = ["rb-fsevent" "rb-inotify"]; @@ -978,10 +1038,20 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0h2v34xhi30w0d9gfzds2w6v89grq2gkpgvmdj9m8x1ld1845xnj"; + sha256 = "0ncfhdkjiwq9l1pm87ax2pa20kz2j0dz56vi74cnr5a6cfk0qb5p"; type = "gem"; }; - version = "3.5.1"; + version = "3.7.0"; + }; + literate_randomizer = { + groups = ["default" "development"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "1c8p8aw93bx4ygpkwfv6dv41psb86jb0pi16gvnv30rr72dkq1q5"; + type = "gem"; + }; + version = "0.4.0"; }; lograge = { dependencies = ["actionpack" "activesupport" "railties" "request_store"]; @@ -1020,10 +1090,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1a65kp9d3n34nnd0vr49s3gxxjzi4l197s3qyq4njjf81smd2764"; + sha256 = "13k73ap18p09bxwgw24xc1lb5bxnky8p0xpx7yrlk74xlffasw30"; type = "gem"; }; - version = "2.9.6"; + version = "2.10.0"; }; loofah = { dependencies = ["crass" "nokogiri"]; @@ -1031,10 +1101,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1w9mbii8515p28xd4k72f3ab2g6xiyq15497ys5r8jn6m355lgi7"; + sha256 = "1nqcya57x2n58y1dify60i0dpla40n4yir928khp4nj5jrn9mgmw"; type = "gem"; }; - version = "2.9.1"; + version = "2.12.0"; }; lru_redux = { groups = ["default"]; @@ -1105,10 +1175,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0gg8axd71vjanzis8w4h4if2qi4fx0glmc258dwa5b3z6zvzsbz8"; + sha256 = "1d0cdx4cszsa0wgnch1b5dcyalg6x9niyydik8yyampnpjghwfnk"; type = "gem"; }; - version = "3.3.5"; + version = "3.3.6"; }; method_source = { groups = ["default" "development" "test"]; @@ -1125,20 +1195,20 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0kb7jq3wjgckmkzna799y5qmvn6vg52878bkgw35qay6lflcrwih"; + sha256 = "0lbim375gw2dk6383qirz13hgdmxlan0vc5da2l072j3qw6fqjm5"; type = "gem"; }; - version = "1.1.0"; + version = "1.1.2"; }; mini_portile2 = { groups = ["default" "development" "test"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1ad0mli9rc0f17zw4ibp24dbj1y39zkykijsjmnzl4gwpg5s0j6k"; + sha256 = "1lvxm91hi0pabnkkg47wh1siv56s6slm2mdq1idfm86dyfidfprq"; type = "gem"; }; - version = "2.5.3"; + version = "2.6.1"; }; mini_racer = { dependencies = ["libv8-node"]; @@ -1146,10 +1216,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0334q46gi3il9izw7k4z32fj06nm8pznqdkr9r51033lnwwy9zy3"; + sha256 = "1b6lahs31m3ky4maq8s83w35lkariq0g1f6bjhnaxvwzjhhar5cf"; type = "gem"; }; - version = "0.4.0"; + version = "0.5.0"; }; mini_scheduler = { dependencies = ["sidekiq"]; @@ -1198,10 +1268,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "05yw6rwgjppq116jgqfg4pv4bql3ci4r2fmmg0m2c3sqib1bq41a"; + sha256 = "15s53ggsykk69kxqvs4416s8yxdhz6caggva55n8sjgy4ixzwp10"; type = "gem"; }; - version = "1.12.0"; + version = "1.13.0"; }; mock_redis = { dependencies = ["ruby2_keywords"]; @@ -1209,10 +1279,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0x6ng2p1884pjpwj169p6xyas5bvshi4q1wfcfmxvk82jwm0cz3c"; + sha256 = "10jj7hralc2hmvvm77w71d4dwq9ij5a1lkqyfw6z32saybzmcs99"; type = "gem"; }; - version = "0.28.0"; + version = "0.29.0"; }; msgpack = { groups = ["default"]; @@ -1273,10 +1343,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "00fwz0qq7agd2xkdz02i8li236qvwhma3p0jdn5bdvc21b7ydzd5"; + sha256 = "0xk64wghkscs6bv2n22853k2nh39d131c6rfpnlw12mbjnnv9v1v"; type = "gem"; }; - version = "2.5.7"; + version = "2.5.8"; }; nokogiri = { dependencies = ["mini_portile2" "racc"]; @@ -1284,31 +1354,20 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1vrn31385ix5k9b0yalnlzv360isv6dincbcvi8psllnwz4sjxj9"; + sha256 = "1v02g7k7cxiwdcahvlxrmizn3avj2q6nsjccgilq1idc89cr081b"; type = "gem"; }; - version = "1.11.7"; - }; - nokogumbo = { - dependencies = ["nokogiri"]; - groups = ["default"]; - platforms = []; - source = { - remotes = ["https://rubygems.org"]; - sha256 = "0ngsnr0l6r4yccdwvky18n9a81plhpviaw6g7ym45mr1q0y0aj2w"; - type = "gem"; - }; - version = "2.0.5"; + version = "1.12.5"; }; oauth = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1zwd6v39yqfdrpg1p3d9jvzs9ljg55ana2p06m0l7qn5w0lgx1a0"; + sha256 = "0h6nfg2pibc17fch0795d4bcy41a92im5zrsrgs31zdhrl6zf4w0"; type = "gem"; }; - version = "0.5.6"; + version = "0.5.8"; }; oauth2 = { dependencies = ["faraday" "jwt" "multi_json" "multi_xml" "rack"]; @@ -1326,10 +1385,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1cnadm83qwnmbpyild9whb9bgf9r7gs046ydxypclb2l756gcnva"; + sha256 = "1fh73xl58n696akgarylfdfmv6l93rfwh3csjjbljr6gvhg4qrz9"; type = "gem"; }; - version = "3.11.5"; + version = "3.13.2"; }; omniauth = { dependencies = ["hashie" "rack"]; @@ -1348,10 +1407,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1z0f5sr2ddnvfva0jrfd4926nlv4528rfj7z595288n39304r092"; + sha256 = "0m7q38kjm94wgq6h7hk9546yg33wcs3vf1v6zp0vx7nwkvfxh2j4"; type = "gem"; }; - version = "8.0.0"; + version = "9.0.0"; }; omniauth-github = { dependencies = ["omniauth" "omniauth-oauth2"]; @@ -1392,10 +1451,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "10fr2b58sp7l6nfdvxpbi67374hkrvsf507cvda89jjs0jacy319"; + sha256 = "1ry65f309rnzhgdjvqybkd5i4qp9rpk1gbp4dz02h4l6bkk6ya10"; type = "gem"; }; - version = "1.7.1"; + version = "1.7.2"; }; omniauth-twitter = { dependencies = ["omniauth-oauth" "rack"]; @@ -1408,26 +1467,16 @@ }; version = "1.4.0"; }; - onebox = { - dependencies = ["addressable" "htmlentities" "multi_json" "mustache" "nokogiri" "sanitize"]; - groups = ["default"]; - platforms = []; - source = { - remotes = ["https://rubygems.org"]; - sha256 = "1swlysqwfc6mb7smv52yv12sd79dchjf2f6r738wrag0wp5hazqy"; - type = "gem"; - }; - version = "2.2.17"; - }; openssl = { + dependencies = ["ipaddr"]; groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "03wbynzkhay7l1x76srjkg91q48mxl575vrxb3blfxlpqwsvvp0w"; + sha256 = "0wkx3b598mxmr3idfbgas0cnrds54bfivnn1ip0d7z7kcr5vzbzn"; type = "gem"; }; - version = "2.2.0"; + version = "2.2.1"; }; openssl-signature_algorithm = { dependencies = ["openssl"]; @@ -1459,10 +1508,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0055br0mibnqz0j8wvy20zry548dhkakws681bhj3ycb972awkzd"; + sha256 = "1hkfpm78c2vs1qblnva3k1grijvxh87iixcnyd83s3lxrxsjvag4"; type = "gem"; }; - version = "1.20.1"; + version = "1.21.0"; }; parallel_tests = { dependencies = ["parallel"]; @@ -1470,10 +1519,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1vrd24lg1pqxvp63664hrndywpdyn8i38j4gfvqk8zjl1mxy9840"; + sha256 = "1vsfsfd194xnzjz94ml157w61fnag8jg47b4bssc508kb3vmk20w"; type = "gem"; }; - version = "3.7.0"; + version = "3.7.3"; }; parser = { dependencies = ["ast"]; @@ -1481,10 +1530,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1pxsi1i5z506xfzhiyavlasf8777h55ab40phvp7pfv9npmd5pnj"; + sha256 = "1skkdjawwigi9vs5zkp03jkpx2f11drfjz483g1xw2dnjdsq22c3"; type = "gem"; }; - version = "3.0.1.1"; + version = "3.0.3.1"; }; pg = { groups = ["default"]; @@ -1555,10 +1604,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "00839fhvcq73h9a4crbrk87y6bi2z4vp1zazxihn6w0mrwr51c3i"; + sha256 = "1xblxnrs0c5m326v7kgr32k4m00cl2ipcf5m0qvyisrw62vd5dbn"; type = "gem"; }; - version = "5.3.1"; + version = "5.5.2"; }; r2 = { groups = ["default"]; @@ -1575,10 +1624,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "178k7r0xn689spviqzhvazzvxfq6fyjldxb3ywjbgipbfi4s8j1g"; + sha256 = "0la56m0z26j3mfn1a9lf2l03qx1xifanndf9p3vx1azf6sqy7v9d"; type = "gem"; }; - version = "1.5.2"; + version = "1.6.0"; }; rack = { groups = ["default" "development" "test"]; @@ -1600,10 +1649,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "02rkbmi66pqcx8l4yxnhpiywdqhbza4m2i2b457q8imjvw950jhs"; + sha256 = "03hcvjw9nrv0w6yjy2zkv4ivin9xg2wr7xfcvx7rc2msv1gmjb6z"; type = "gem"; }; - version = "2.3.2"; + version = "2.3.3"; }; rack-protection = { dependencies = ["rack"]; @@ -1644,10 +1693,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1icpqmxbppl4ynzmn6dx7wdil5hhq6fz707m9ya6d86c7ys8sd4f"; + sha256 = "09qrfi3pgllxb08r024lln9k0qzxs57v0slsj8616xf9c0cwnwbk"; type = "gem"; }; - version = "1.3.0"; + version = "1.4.2"; }; rails_failover = { dependencies = ["activerecord" "concurrent-ruby" "railties"]; @@ -1666,10 +1715,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "09lwi5pd0bisy45pv85l8w7wm5f7l5bxpva0y7bcvqdrk49ykm1g"; + sha256 = "1j44n1c19gbskzxskdipr5f6lgglpn398x9kcbpw452wwwav8rmf"; type = "gem"; }; - version = "3.0.0"; + version = "4.0.0"; }; railties = { dependencies = ["actionpack" "activesupport" "method_source" "rake" "thor"]; @@ -1677,10 +1726,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "17r1pr8d467vh3zkciw4wmrcixj9zjrvd11nxn2z091bkzf66xq2"; + sha256 = "1kwpm068cqys34p2g0j3l1g0cd5f3kxnsay5v7lmbd0sgarac0vy"; type = "gem"; }; - version = "6.1.3.2"; + version = "6.1.4.1"; }; rainbow = { groups = ["default" "development" "test"]; @@ -1703,20 +1752,20 @@ }]; source = { remotes = ["https://rubygems.org"]; - sha256 = "0zjja00mzgx2lddb7qrn14k7qrnwhf4bpmnlqj78m1pfxh7svync"; + sha256 = "07nikrdnsf6g55225njnzs1lm9s0lnbv2krvqd2gldwl49l7vl9x"; type = "gem"; }; - version = "0.19.1"; + version = "0.19.2"; }; rake = { groups = ["default" "development" "test"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1iik52mf9ky4cgs38fp2m8r6skdkq1yz23vh18lk95fhbcxb6a67"; + sha256 = "15whn7p9nrkxangbs9hh75q585yfn66lv0v2mhj6q6dl6x8bzr2w"; type = "gem"; }; - version = "13.0.3"; + version = "13.0.6"; }; rb-fsevent = { groups = ["development" "test"]; @@ -1769,10 +1818,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "15x2sr6h094rjbvg8pkq6m3lcd5abpyx93aifvfdz3wv6x55xa48"; + sha256 = "03r9739q3vq38g456snf3rk9hadf955bs5im6qs6m69h19mrz2yw"; type = "gem"; }; - version = "4.2.5"; + version = "4.5.1"; }; redis-namespace = { dependencies = ["redis"]; @@ -1842,20 +1891,20 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "073w0qgjydkqpsqsb9yr8qg0mhvwlzx6z53hqr2b5zifvb9wzh02"; + sha256 = "0444sgvx3ahvgr3c9swpy32kcdpciwgcqahp3pb4m7d23xp1qjdc"; type = "gem"; }; - version = "2.0.0"; + version = "2.1.0"; }; rqrcode_core = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1djrfpzdy19c336nlzxdsm9qkrgqnm1himdawflsjsmxpq4j826c"; + sha256 = "06ld6386hbdhy5h0k09axmgn424kavpc8f27k1vjhknjhbf8jjfg"; type = "gem"; }; - version = "1.0.0"; + version = "1.2.0"; }; rspec = { dependencies = ["rspec-core" "rspec-expectations" "rspec-mocks"]; @@ -1918,20 +1967,31 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1pj2a9vrkp2xzlq0810q90sdc2zcqc7k92n57hxzhri2vcspy7n6"; + sha256 = "152yz205p8zi5nxxhs8z581rjdvvqsfjndklkvn11f2vi50nv7n9"; type = "gem"; }; - version = "5.0.1"; + version = "5.0.2"; }; rspec-support = { groups = ["default" "development" "test"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "15j52parvb8cgvl6s0pbxi2ywxrv6x0764g222kz5flz0s4mycbl"; + sha256 = "0pjckrh8q6sqxy38xw7f4ziylq1983k84xh927s6352pps68zj35"; type = "gem"; }; - version = "3.10.2"; + version = "3.10.3"; + }; + rss = { + dependencies = ["rexml"]; + groups = ["default"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "1b1zx07kr64kkpm4lssd4r1a1qyr829ppmfl85i4adcvx9mqfid0"; + type = "gem"; + }; + version = "0.2.9"; }; rswag-specs = { dependencies = ["activesupport" "json-schema" "railties"]; @@ -1960,10 +2020,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0chjr6i0g7frbp7dhi4d83ppf7akkdaw7mcgcwbxd6a9mairafpp"; + sha256 = "03ivbqd5blsb7v5mhrzxvn23779rqpyrsm7l086pb6ihp47122qb"; type = "gem"; }; - version = "1.14.0"; + version = "1.23.0"; }; rubocop-ast = { dependencies = ["parser"]; @@ -1971,10 +2031,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0hx4im1a2qpiwipvsl3fma358ixjp4h0mhj56ichq15xrq709qlf"; + sha256 = "06krbzlj49gjfmxpjwadfwqsqg5bgcp9k1fahyxxk3f6idqhkjbv"; type = "gem"; }; - version = "1.5.0"; + version = "1.13.0"; }; rubocop-discourse = { dependencies = ["rubocop" "rubocop-rspec"]; @@ -1982,21 +2042,21 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1z1h8spsjnsqz6c25n9ib1yimkwr7a76bas8w1k9c404hcqhlahv"; + sha256 = "1agjjqdzajlssw2lxpchz5gr2sll9lh5yldccgmghxh39l01cr0a"; type = "gem"; }; - version = "2.4.1"; + version = "2.4.2"; }; rubocop-rspec = { - dependencies = ["rubocop" "rubocop-ast"]; + dependencies = ["rubocop"]; groups = ["default" "development" "test"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0r69qcwm74vsbp1s2gaqaf91kkrsn2mv4gk6rvfb2pxzmgyi0r9g"; + sha256 = "0g7kwmb1ilmc8pfyvfh87yjp26qzij2ib7h3lqcl42cp33cg2zzk"; type = "gem"; }; - version = "2.3.0"; + version = "2.6.0"; }; ruby-prof = { groups = ["development"]; @@ -2038,31 +2098,31 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "15wfcqxyfgka05v2a7kpg64x57gl1y4xzvnc9lh60bqx5sf1iqrs"; + sha256 = "1vz322p8n39hz3b4a9gkmz9y7a5jaz41zrm2ywf31dvkqm03glgz"; type = "gem"; }; - version = "0.0.4"; + version = "0.0.5"; }; rubyzip = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0590m2pr9i209pp5z4mx0nb1961ishdiqb28995hw1nln1d1b5ji"; + sha256 = "0grps9197qyxakbpw02pda59v45lfgbgiyw48i0mq9f2bn9y6mrz"; type = "gem"; }; - version = "2.3.0"; + version = "2.3.2"; }; sanitize = { - dependencies = ["crass" "nokogiri" "nokogumbo"]; + dependencies = ["crass" "nokogiri"]; groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0xi2c9vbfjs0gk4i9y4mrlb3xx6g5lj22hlg5cx6hyc88ri7j4bc"; + sha256 = "1zq8pxmsd1abw18zz6mazsm2jfpwmbgdxbpawb7bmwvkb2c5yyc1"; type = "gem"; }; - version = "5.2.3"; + version = "6.0.0"; }; sassc = { dependencies = ["ffi" "rake"]; @@ -2103,10 +2163,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1qi7gzli00mqlaq9an28m6xd323k7grgq19r6dqa2amjnnxy41ld"; + sha256 = "0z6v2acldnvqrnvfk70f9xq39ppw5j03kbz2hpz7s17lgnn21vx8"; type = "gem"; }; - version = "4.5.1"; + version = "5.0.0"; }; sidekiq = { dependencies = ["connection_pool" "rack" "redis"]; @@ -2114,10 +2174,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1ac57q6lnqg9h9lsj49wlwhgsfqfr83lgka1c1srk6g8vghhz662"; + sha256 = "0k38cbwhcj9ncfzlgfmvq2zqfdvldln58w8s8v89m0jqlhnhsqhj"; type = "gem"; }; - version = "6.2.1"; + version = "6.3.1"; }; simplecov = { dependencies = ["docile" "simplecov-html" "simplecov_json_formatter"]; @@ -2167,10 +2227,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0mwmz36265646xqfyczgr1mhkm1hfxgxxvgdgr4xfcbf2g72p1k2"; + sha256 = "0pjz4lbv2v0p9fa5nsrxy5lphsixb9a69gq2rxp0h5sr61m18mdq"; type = "gem"; }; - version = "3.2.2"; + version = "3.4.1"; }; sshkey = { groups = ["default"]; @@ -2201,10 +2261,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "15jbm45jf1i8s1g5kj6pcfp6ddq9qfyy31lx3pff8g2w2hkhpik4"; + sha256 = "1vg0zjfgibdcgkzb4c25v0f4v6v8mvpzvgcag194rwglmkkyrwkx"; type = "gem"; }; - version = "1.0.5"; + version = "1.0.7"; }; thor = { groups = ["default" "development" "test"]; @@ -2264,20 +2324,20 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0wc47r23h063l8ysws8sy24gzh74mks81cak3lkzlrw4qkqb3sg4"; + sha256 = "0jmbimpnpjdzz8hlrppgl9spm99qh3qzbx0b81k3gkgwba8nk3yd"; type = "gem"; }; - version = "0.0.7.7"; + version = "0.0.8"; }; unicode-display_width = { groups = ["default" "development" "test"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1bilbnc8j6jkb59lrf177i3p1pdyxll0n8400hzqr35vl3r3kv2m"; + sha256 = "0csjm9shhfik0ci9mgimb7hf3xgh7nx45rkd9rzgdz6vkwr8rzxn"; type = "gem"; }; - version = "2.0.0"; + version = "2.1.0"; }; unicorn = { dependencies = ["kgio" "raindrops"]; @@ -2322,10 +2382,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "038igpmkpmn0nw0k7s4db8x88af1nwcy7wzh9m9c9q4p74h7rii0"; + sha256 = "1l8vh8p0g92cqcvv0ra3mblsa4nczh0rz8nbwbkc3g3yzbva85xk"; type = "gem"; }; - version = "3.12.2"; + version = "3.14.0"; }; webpush = { dependencies = ["hkdf" "jwt"]; @@ -2363,9 +2423,9 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1746czsjarixq0x05f7p3hpzi38ldg6wxnxxw74kbjzh1sdjgmpl"; + sha256 = "18l4r6layck0d80ydc692mv1lxak5xbf6w2paj1x7m2ggbggzxgj"; type = "gem"; }; - version = "2.4.2"; + version = "2.5.1"; }; } diff --git a/pkgs/servers/web-apps/discourse/update.py b/pkgs/servers/web-apps/discourse/update.py index ffdff7bc06a1..a0b9d5e6519d 100755 --- a/pkgs/servers/web-apps/discourse/update.py +++ b/pkgs/servers/web-apps/discourse/update.py @@ -22,7 +22,7 @@ logger = logging.getLogger(__name__) class DiscourseRepo: - version_regex = re.compile(r'^v\d+\.\d+\.\d+$') + version_regex = re.compile(r'^v\d+\.\d+\.\d+.beta\d+$') _latest_commit_sha = None def __init__(self, owner: str = 'discourse', repo: str = 'discourse'): From ab042d6452751e9d6e7c222e5fcb194e3d3c0ba9 Mon Sep 17 00:00:00 2001 From: talyz Date: Fri, 26 Nov 2021 14:59:09 +0100 Subject: [PATCH 025/278] discourse.plugins: Update all plugins to their latest versions Also, add support for updating plugins which keep gem versions in files at the root of the repo (discourse-prometheus) and replace the `up-plugin.sh` script with a README file pointing to the plugin packaging documentation. --- nixos/modules/services/web-apps/discourse.xml | 2 +- .../servers/web-apps/discourse/plugins/README | 4 ++ .../plugins/discourse-assign/default.nix | 4 +- .../plugins/discourse-calendar/Gemfile.lock | 4 +- .../plugins/discourse-calendar/default.nix | 4 +- .../plugins/discourse-calendar/gemset.nix | 8 ++-- .../discourse-chat-integration/default.nix | 4 +- .../plugins/discourse-checklist/default.nix | 4 +- .../discourse-data-explorer/default.nix | 4 +- .../plugins/discourse-docs/default.nix | 4 +- .../plugins/discourse-github/default.nix | 4 +- .../plugins/discourse-ldap-auth/Gemfile | 3 ++ .../plugins/discourse-ldap-auth/Gemfile.lock | 6 +-- .../plugins/discourse-ldap-auth/default.nix | 4 +- .../plugins/discourse-ldap-auth/gemset.nix | 4 +- .../plugins/discourse-math/default.nix | 4 +- .../discourse-openid-connect/default.nix | 4 +- .../plugins/discourse-prometheus/Gemfile | 4 +- .../plugins/discourse-prometheus/Gemfile.lock | 2 +- .../plugins/discourse-prometheus/default.nix | 4 +- .../prometheus_exporter_version | 1 + .../plugins/discourse-solved/default.nix | 4 +- .../discourse-spoiler-alert/default.nix | 4 +- .../plugins/discourse-voting/default.nix | 4 +- .../discourse-yearly-review/default.nix | 4 +- .../web-apps/discourse/plugins/up-plugin.sh | 39 ------------------- pkgs/servers/web-apps/discourse/update.py | 13 +++++-- 27 files changed, 63 insertions(+), 87 deletions(-) create mode 100644 pkgs/servers/web-apps/discourse/plugins/README create mode 100644 pkgs/servers/web-apps/discourse/plugins/discourse-prometheus/prometheus_exporter_version delete mode 100755 pkgs/servers/web-apps/discourse/plugins/up-plugin.sh diff --git a/nixos/modules/services/web-apps/discourse.xml b/nixos/modules/services/web-apps/discourse.xml index 184c9c6363e5..e91d3eac422d 100644 --- a/nixos/modules/services/web-apps/discourse.xml +++ b/nixos/modules/services/web-apps/discourse.xml @@ -297,7 +297,7 @@ services.discourse = { the script: ./update.py update-plugins -. + diff --git a/pkgs/servers/web-apps/discourse/plugins/README b/pkgs/servers/web-apps/discourse/plugins/README new file mode 100644 index 000000000000..e0a88211dae8 --- /dev/null +++ b/pkgs/servers/web-apps/discourse/plugins/README @@ -0,0 +1,4 @@ +Run the nixpkgs/pkgs/servers/web-apps/discourse/update.py script to +update plugins! See the Plugins section of the Discourse chapter in +the NixOS manual (https://nixos.org/manual/nixos/unstable/index.html#module-services-discourse) +for more info. diff --git a/pkgs/servers/web-apps/discourse/plugins/discourse-assign/default.nix b/pkgs/servers/web-apps/discourse/plugins/discourse-assign/default.nix index a514425c4031..ce0d3c137371 100644 --- a/pkgs/servers/web-apps/discourse/plugins/discourse-assign/default.nix +++ b/pkgs/servers/web-apps/discourse/plugins/discourse-assign/default.nix @@ -5,8 +5,8 @@ mkDiscoursePlugin { src = fetchFromGitHub { owner = "discourse"; repo = "discourse-assign"; - rev = "5124ba0f67e26a075f0a0fc8993273f1211d1c28"; - sha256 = "1zd2irp5siza0vd5rlwzmjfvcdfw785988jc526xc741flazk1lr"; + rev = "91d0712b0440b6bb0c2fedbf6c31191cdeb991fe"; + sha256 = "sha256-ATWLu0vJZFquRcAUpFKaU8mqjjVOv3PziAsHR3aemWk="; }; meta = with lib; { homepage = "https://github.com/discourse/discourse-docs"; diff --git a/pkgs/servers/web-apps/discourse/plugins/discourse-calendar/Gemfile.lock b/pkgs/servers/web-apps/discourse/plugins/discourse-calendar/Gemfile.lock index d31b4afe5191..c06404848514 100644 --- a/pkgs/servers/web-apps/discourse/plugins/discourse-calendar/Gemfile.lock +++ b/pkgs/servers/web-apps/discourse/plugins/discourse-calendar/Gemfile.lock @@ -8,14 +8,14 @@ GEM tzinfo (~> 2.0) zeitwerk (~> 2.3) concurrent-ruby (1.1.9) - i18n (1.8.10) + i18n (1.8.11) concurrent-ruby (~> 1.0) minitest (5.14.4) rrule (0.4.2) activesupport (>= 4.1) tzinfo (2.0.4) concurrent-ruby (~> 1.0) - zeitwerk (2.4.2) + zeitwerk (2.5.1) PLATFORMS ruby diff --git a/pkgs/servers/web-apps/discourse/plugins/discourse-calendar/default.nix b/pkgs/servers/web-apps/discourse/plugins/discourse-calendar/default.nix index a437f293fa6f..6bcdb3119c3a 100644 --- a/pkgs/servers/web-apps/discourse/plugins/discourse-calendar/default.nix +++ b/pkgs/servers/web-apps/discourse/plugins/discourse-calendar/default.nix @@ -6,8 +6,8 @@ mkDiscoursePlugin { src = fetchFromGitHub { owner = "discourse"; repo = "discourse-calendar"; - rev = "2f76cdd3064735d484be1df77f43100aca21aea6"; - sha256 = "1skpc8p5br1jkii1rksha1q95ias6xxyvi5bnli3q41w7fz1h5j2"; + rev = "fbc617a5fa9f3a22bcc72bc2b32ea3cbdf6087c5"; + sha256 = "sha256-qBtq8IvxdKYIFNL9DwdRqZceMMO/qgd6jTr3kk3so3Y="; }; meta = with lib; { homepage = "https://github.com/discourse/discourse-calendar"; diff --git a/pkgs/servers/web-apps/discourse/plugins/discourse-calendar/gemset.nix b/pkgs/servers/web-apps/discourse/plugins/discourse-calendar/gemset.nix index 4f1e4c100c0b..0248d93fc940 100644 --- a/pkgs/servers/web-apps/discourse/plugins/discourse-calendar/gemset.nix +++ b/pkgs/servers/web-apps/discourse/plugins/discourse-calendar/gemset.nix @@ -26,10 +26,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0g2fnag935zn2ggm5cn6k4s4xvv53v2givj1j90szmvavlpya96a"; + sha256 = "0vdd1kii40qhbr9n8qx71k2gskq6rkl8ygy8hw5hfj8bb5a364xf"; type = "gem"; }; - version = "1.8.10"; + version = "1.8.11"; }; minitest = { groups = ["default"]; @@ -68,9 +68,9 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1746czsjarixq0x05f7p3hpzi38ldg6wxnxxw74kbjzh1sdjgmpl"; + sha256 = "18l4r6layck0d80ydc692mv1lxak5xbf6w2paj1x7m2ggbggzxgj"; type = "gem"; }; - version = "2.4.2"; + version = "2.5.1"; }; } diff --git a/pkgs/servers/web-apps/discourse/plugins/discourse-chat-integration/default.nix b/pkgs/servers/web-apps/discourse/plugins/discourse-chat-integration/default.nix index 3079447dbb0a..b7123aca7d76 100644 --- a/pkgs/servers/web-apps/discourse/plugins/discourse-chat-integration/default.nix +++ b/pkgs/servers/web-apps/discourse/plugins/discourse-chat-integration/default.nix @@ -5,8 +5,8 @@ mkDiscoursePlugin { src = fetchFromGitHub { owner = "discourse"; repo = "discourse-chat-integration"; - rev = "8ade892b387f0ce843d5e78ef4a271b0d35847ff"; - sha256 = "1qn1bm09i9gzmh74ws32zgc89hrqzyhmh63qvmv0h00r52rmgxvx"; + rev = "ae0389ca89f26401a6c4cffaaae6adcf14af0e15"; + sha256 = "sha256-wT9S2mMz2MOpWpYv/FrHYhZibStRIGC4P2Vrqs04bkA="; }; meta = with lib; { homepage = "https://github.com/discourse/discourse-chat-integration"; diff --git a/pkgs/servers/web-apps/discourse/plugins/discourse-checklist/default.nix b/pkgs/servers/web-apps/discourse/plugins/discourse-checklist/default.nix index 2bcf88da150a..c02614f0c094 100644 --- a/pkgs/servers/web-apps/discourse/plugins/discourse-checklist/default.nix +++ b/pkgs/servers/web-apps/discourse/plugins/discourse-checklist/default.nix @@ -5,8 +5,8 @@ mkDiscoursePlugin { src = fetchFromGitHub { owner = "discourse"; repo = "discourse-checklist"; - rev = "48855d81b7c3a3274f7f78a64312125c344d92d1"; - sha256 = "0139v5wpyglfzvd07ka6gic1ssfysisgfiq09dsbjy519gnc9kjw"; + rev = "d8012abd3d6dccb72eec83e6a96ef4809dcad681"; + sha256 = "1ngjql65939c571gyaqj8ydcxy5kkril2qlkxqf579vvwzpvxw13"; }; meta = with lib; { homepage = "https://github.com/discourse/discourse-checklist"; diff --git a/pkgs/servers/web-apps/discourse/plugins/discourse-data-explorer/default.nix b/pkgs/servers/web-apps/discourse/plugins/discourse-data-explorer/default.nix index 90218759cac5..46f0ec4d2ca5 100644 --- a/pkgs/servers/web-apps/discourse/plugins/discourse-data-explorer/default.nix +++ b/pkgs/servers/web-apps/discourse/plugins/discourse-data-explorer/default.nix @@ -5,8 +5,8 @@ mkDiscoursePlugin { src = fetchFromGitHub { owner = "discourse"; repo = "discourse-data-explorer"; - rev = "23287ece952cb45203819e7b470ebc194c58cb13"; - sha256 = "1vc2072r72fkvcfpy6vpn9x4gl9lpjk29pnj8095xs22im8j5in1"; + rev = "3ce778ec6d96a300a06ffe0581f4681fbed8df7f"; + sha256 = "1555k1anrijfbm0qfraby3ivh6h76177d541nxhnarj85mjx0hjb"; }; meta = with lib; { homepage = "https://github.com/discourse/discourse-data-explorer"; diff --git a/pkgs/servers/web-apps/discourse/plugins/discourse-docs/default.nix b/pkgs/servers/web-apps/discourse/plugins/discourse-docs/default.nix index 1206fb0cd6ad..78ae9aba6fc6 100644 --- a/pkgs/servers/web-apps/discourse/plugins/discourse-docs/default.nix +++ b/pkgs/servers/web-apps/discourse/plugins/discourse-docs/default.nix @@ -5,8 +5,8 @@ mkDiscoursePlugin { src = fetchFromGitHub { owner = "discourse"; repo = "discourse-docs"; - rev = "72cdd8d415ae3f797c0d5e2c857370714a42c54a"; - sha256 = "07hvw8lpg8873vhwh8rrbml3s5hq606b7sw93r2xv38gxfhmx5lq"; + rev = "d3eee7008b7a703774331808e302e36f2f8b4eae"; + sha256 = "1p3aqfpv207pvlbis43znwgw56yqsn41320yaw1gdcaakf5s2rsx"; }; meta = with lib; { homepage = "https://github.com/discourse/discourse-docs"; diff --git a/pkgs/servers/web-apps/discourse/plugins/discourse-github/default.nix b/pkgs/servers/web-apps/discourse/plugins/discourse-github/default.nix index 0ea57071ebec..f56c23febbb6 100644 --- a/pkgs/servers/web-apps/discourse/plugins/discourse-github/default.nix +++ b/pkgs/servers/web-apps/discourse/plugins/discourse-github/default.nix @@ -6,8 +6,8 @@ mkDiscoursePlugin { src = fetchFromGitHub { owner = "discourse"; repo = "discourse-github"; - rev = "9aaf4350968fb758f9bff3588f78e3ad24ddb4b0"; - sha256 = "0nmpkh1rr0jv68a655f5610v2mn09xriiqv049a0gklap2lgv7p8"; + rev = "8cd8c0703991c16cb2fa8cb1fd22a9c3849c7ae2"; + sha256 = "17ga31a10sm3fqjpf40mz7fk62vynyng2a243pia9fjdq9py8slx"; }; meta = with lib; { homepage = "https://github.com/discourse/discourse-github"; diff --git a/pkgs/servers/web-apps/discourse/plugins/discourse-ldap-auth/Gemfile b/pkgs/servers/web-apps/discourse/plugins/discourse-ldap-auth/Gemfile index 897a808c1d7d..a988913a1bf6 100644 --- a/pkgs/servers/web-apps/discourse/plugins/discourse-ldap-auth/Gemfile +++ b/pkgs/servers/web-apps/discourse/plugins/discourse-ldap-auth/Gemfile @@ -2,6 +2,9 @@ source "https://rubygems.org" +git_source(:github) { |repo_name| "https://github.com/#{repo_name}" } + +# gem "rails" gem 'pyu-ruby-sasl', '0.0.3.3', require: false gem 'rubyntlm', '0.3.4', require: false gem 'net-ldap', '0.14.0' diff --git a/pkgs/servers/web-apps/discourse/plugins/discourse-ldap-auth/Gemfile.lock b/pkgs/servers/web-apps/discourse/plugins/discourse-ldap-auth/Gemfile.lock index 2843cb0d8f09..83e3cd4cbf47 100644 --- a/pkgs/servers/web-apps/discourse/plugins/discourse-ldap-auth/Gemfile.lock +++ b/pkgs/servers/web-apps/discourse/plugins/discourse-ldap-auth/Gemfile.lock @@ -1,7 +1,7 @@ GEM remote: https://rubygems.org/ specs: - hashie (4.1.0) + hashie (5.0.0) net-ldap (0.14.0) omniauth (1.9.1) hashie (>= 3.4.6) @@ -16,7 +16,7 @@ GEM rubyntlm (0.3.4) PLATFORMS - x86_64-linux + ruby DEPENDENCIES net-ldap (= 0.14.0) @@ -25,4 +25,4 @@ DEPENDENCIES rubyntlm (= 0.3.4) BUNDLED WITH - 2.2.20 + 2.2.24 diff --git a/pkgs/servers/web-apps/discourse/plugins/discourse-ldap-auth/default.nix b/pkgs/servers/web-apps/discourse/plugins/discourse-ldap-auth/default.nix index 92a3c2544cda..ea71c69a07d2 100644 --- a/pkgs/servers/web-apps/discourse/plugins/discourse-ldap-auth/default.nix +++ b/pkgs/servers/web-apps/discourse/plugins/discourse-ldap-auth/default.nix @@ -6,8 +6,8 @@ mkDiscoursePlugin { src = fetchFromGitHub { owner = "jonmbake"; repo = "discourse-ldap-auth"; - rev = "eca02c560f2f2bf42feeb1923bc17e074f16b891"; - sha256 = "sha256-HLNoDvvxkBMvqP6WbRrJY0CYnK92W77nzSpuwgl0VPA="; + rev = "1c10221836393c3cfac470a7b08de6f31150c802"; + sha256 = "sha256-IiAl3OTADXSUnL+OKKHJY9Xqd4zCNJ2wOrgTN3nm5Yw="; }; meta = with lib; { homepage = "https://github.com/jonmbake/discourse-ldap-auth"; diff --git a/pkgs/servers/web-apps/discourse/plugins/discourse-ldap-auth/gemset.nix b/pkgs/servers/web-apps/discourse/plugins/discourse-ldap-auth/gemset.nix index e684a5064791..7d5816cf53cb 100644 --- a/pkgs/servers/web-apps/discourse/plugins/discourse-ldap-auth/gemset.nix +++ b/pkgs/servers/web-apps/discourse/plugins/discourse-ldap-auth/gemset.nix @@ -4,10 +4,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "02bsx12ihl78x0vdm37byp78jjw2ff6035y7rrmbd90qxjwxr43q"; + sha256 = "1nh3arcrbz1rc1cr59qm53sdhqm137b258y8rcb4cvd3y98lwv4x"; type = "gem"; }; - version = "4.1.0"; + version = "5.0.0"; }; net-ldap = { groups = ["default"]; diff --git a/pkgs/servers/web-apps/discourse/plugins/discourse-math/default.nix b/pkgs/servers/web-apps/discourse/plugins/discourse-math/default.nix index 812ea88d0402..ea449e9501da 100644 --- a/pkgs/servers/web-apps/discourse/plugins/discourse-math/default.nix +++ b/pkgs/servers/web-apps/discourse/plugins/discourse-math/default.nix @@ -5,8 +5,8 @@ mkDiscoursePlugin { src = fetchFromGitHub { owner = "discourse"; repo = "discourse-math"; - rev = "d7d0180352dd5a7dcb76c0817bfbb08c2a0f08c7"; - sha256 = "0y72impvnq965ibbfc9877hr78fxkrwav1xmgyy3r9w87952vcwa"; + rev = "cacbd04bb239db3c772ff5a37c19fe39d127ff3d"; + sha256 = "1bhs7wslb4rdf2b6h6klw1mpjf9pjpfpf2zg2mj8vg0acyaqvv9d"; }; meta = with lib; { homepage = "https://github.com/discourse/discourse-math"; diff --git a/pkgs/servers/web-apps/discourse/plugins/discourse-openid-connect/default.nix b/pkgs/servers/web-apps/discourse/plugins/discourse-openid-connect/default.nix index 7162aa8a16ff..ba5bf27eb77c 100644 --- a/pkgs/servers/web-apps/discourse/plugins/discourse-openid-connect/default.nix +++ b/pkgs/servers/web-apps/discourse/plugins/discourse-openid-connect/default.nix @@ -6,8 +6,8 @@ mkDiscoursePlugin { src = fetchFromGitHub { owner = "discourse"; repo = "discourse-openid-connect"; - rev = "615038bd65f4fbe4dfdf8444b2f5eb06986b80b8"; - sha256 = "n8feZkP80iNc+BzTPyKD7kEgFSIkk091eJYuqonN/NU="; + rev = "0e1511fcec2bbb26ef08e453920e955d4140df42"; + sha256 = "02knx3z0ycz83cdarld2hmmpl6f9nkd2snp0qsbk9mjvbfvpfkni"; }; meta = with lib; { homepage = "https://github.com/discourse/discourse-openid-connect"; diff --git a/pkgs/servers/web-apps/discourse/plugins/discourse-prometheus/Gemfile b/pkgs/servers/web-apps/discourse/plugins/discourse-prometheus/Gemfile index 3a73fc55839d..ed57d552593e 100644 --- a/pkgs/servers/web-apps/discourse/plugins/discourse-prometheus/Gemfile +++ b/pkgs/servers/web-apps/discourse/plugins/discourse-prometheus/Gemfile @@ -2,7 +2,7 @@ source "https://rubygems.org" -git_source(:github) {|repo_name| "https://github.com/#{repo_name}" } +git_source(:github) { |repo_name| "https://github.com/#{repo_name}" } # gem "rails" -gem 'prometheus_exporter', '0.5.0' +gem 'prometheus_exporter', File.read(File.expand_path("../prometheus_exporter_version", __FILE__)).strip diff --git a/pkgs/servers/web-apps/discourse/plugins/discourse-prometheus/Gemfile.lock b/pkgs/servers/web-apps/discourse/plugins/discourse-prometheus/Gemfile.lock index 75c139cbfc0e..7fbd6680db6c 100644 --- a/pkgs/servers/web-apps/discourse/plugins/discourse-prometheus/Gemfile.lock +++ b/pkgs/servers/web-apps/discourse/plugins/discourse-prometheus/Gemfile.lock @@ -10,4 +10,4 @@ DEPENDENCIES prometheus_exporter (= 0.5.0) BUNDLED WITH - 2.1.4 + 2.2.24 diff --git a/pkgs/servers/web-apps/discourse/plugins/discourse-prometheus/default.nix b/pkgs/servers/web-apps/discourse/plugins/discourse-prometheus/default.nix index 4c6c12f22b3f..2685f73f1715 100644 --- a/pkgs/servers/web-apps/discourse/plugins/discourse-prometheus/default.nix +++ b/pkgs/servers/web-apps/discourse/plugins/discourse-prometheus/default.nix @@ -6,8 +6,8 @@ src = fetchFromGitHub { owner = "discourse"; repo = "discourse-prometheus"; - rev = "46260710e8770344af438f86b47409d864a1c499"; - sha256 = "0nmpi0nysp59x4hyn1c3niypvxw1jkz86acb6m8acacw0c6682k2"; + rev = "08138ae4f89da76dd577781a2116b2ab66f8f547"; + sha256 = "1x4awgx9fj0a6drsix3mi39ynj56rca3km0fz2xb3g6vxgc7d2z1"; }; patches = [ diff --git a/pkgs/servers/web-apps/discourse/plugins/discourse-prometheus/prometheus_exporter_version b/pkgs/servers/web-apps/discourse/plugins/discourse-prometheus/prometheus_exporter_version new file mode 100644 index 000000000000..8f0916f768f0 --- /dev/null +++ b/pkgs/servers/web-apps/discourse/plugins/discourse-prometheus/prometheus_exporter_version @@ -0,0 +1 @@ +0.5.0 diff --git a/pkgs/servers/web-apps/discourse/plugins/discourse-solved/default.nix b/pkgs/servers/web-apps/discourse/plugins/discourse-solved/default.nix index b66aa1a7fab8..2e9654ef4ae7 100644 --- a/pkgs/servers/web-apps/discourse/plugins/discourse-solved/default.nix +++ b/pkgs/servers/web-apps/discourse/plugins/discourse-solved/default.nix @@ -5,8 +5,8 @@ mkDiscoursePlugin { src = fetchFromGitHub { owner = "discourse"; repo = "discourse-solved"; - rev = "55cb184f7ef2954326561cc44fc8134798b8a9e0"; - sha256 = "0pv5i216zn0v8xfwlndvhvr06vkmxaynj8xjfnc5amy1sp6k76w7"; + rev = "40277e50d43e4bdaab99efab44f59f6e33d74740"; + sha256 = "02n266swdslws8r26xf99l3ghpqd3dryd0qfp7kiqk3ksy8hh5n2"; }; meta = with lib; { homepage = "https://github.com/discourse/discourse-solved"; diff --git a/pkgs/servers/web-apps/discourse/plugins/discourse-spoiler-alert/default.nix b/pkgs/servers/web-apps/discourse/plugins/discourse-spoiler-alert/default.nix index 5b745cbd603b..85f54655f171 100644 --- a/pkgs/servers/web-apps/discourse/plugins/discourse-spoiler-alert/default.nix +++ b/pkgs/servers/web-apps/discourse/plugins/discourse-spoiler-alert/default.nix @@ -5,8 +5,8 @@ mkDiscoursePlugin { src = fetchFromGitHub { owner = "discourse"; repo = "discourse-spoiler-alert"; - rev = "0b93227ea8e2c72afe72029382081ebff89c3638"; - sha256 = "0x0dxb41ss15sv5ph7z7q55ayf8a7r22bgkmr17924mny5440b5a"; + rev = "790380d9d321f9368c7a16d8ed87718fc6047bf2"; + sha256 = "079w4x2wlbsx164wv0zb373r8552wb5fvrb9pqzmrfvy0ybwf328"; }; meta = with lib; { homepage = "https://github.com/discourse/discourse-spoiler-alert"; diff --git a/pkgs/servers/web-apps/discourse/plugins/discourse-voting/default.nix b/pkgs/servers/web-apps/discourse/plugins/discourse-voting/default.nix index f7748f5a52d3..fdc0c0f051a4 100644 --- a/pkgs/servers/web-apps/discourse/plugins/discourse-voting/default.nix +++ b/pkgs/servers/web-apps/discourse/plugins/discourse-voting/default.nix @@ -5,8 +5,8 @@ mkDiscoursePlugin { src = fetchFromGitHub { owner = "discourse"; repo = "discourse-voting"; - rev = "fc4d23174eba1a57ddcba93eaf4a4e75d469d4a4"; - sha256 = "07mj667qn387kaafg475f36pgnannsrb2bdqi0zj487av43252qb"; + rev = "36a41c2969c1ddfd8980e3f766b730b849726a08"; + sha256 = "0ns2i8liwpd29kbn44wzx9yb0jfpyz70h0hmrs71hz6fdalzm4ph"; }; meta = with lib; { homepage = "https://github.com/discourse/discourse-voting"; diff --git a/pkgs/servers/web-apps/discourse/plugins/discourse-yearly-review/default.nix b/pkgs/servers/web-apps/discourse/plugins/discourse-yearly-review/default.nix index ea48d9997bb8..0cd8363ba0f4 100644 --- a/pkgs/servers/web-apps/discourse/plugins/discourse-yearly-review/default.nix +++ b/pkgs/servers/web-apps/discourse/plugins/discourse-yearly-review/default.nix @@ -5,8 +5,8 @@ mkDiscoursePlugin { src = fetchFromGitHub { owner = "discourse"; repo = "discourse-yearly-review"; - rev = "cb040562f6af3163d70e8932867b530c6640ab9a"; - sha256 = "07h6nq4bafs27ly2f5chkn5vb1wdy909qffwkgp5k1fanhbqvhvs"; + rev = "683327574ea1a67c9c4182c887d6ba85171ca02b"; + sha256 = "0y0hvb2ir9254ilpf7mnbn9xvv9anyqj4qwh97cw7jly7n2mga4m"; }; meta = with lib; { homepage = "https://github.com/discourse/discourse-yearly-review"; diff --git a/pkgs/servers/web-apps/discourse/plugins/up-plugin.sh b/pkgs/servers/web-apps/discourse/plugins/up-plugin.sh deleted file mode 100755 index ba103c5f6b2b..000000000000 --- a/pkgs/servers/web-apps/discourse/plugins/up-plugin.sh +++ /dev/null @@ -1,39 +0,0 @@ -#!/usr/bin/env nix-shell -#!nix-shell -i bash -p bash curl ruby.devEnv git sqlite libpcap postgresql libxml2 libxslt pkg-config bundix gnumake -# src https://nixos.wiki/wiki/Packaging/Ruby - -# This script should be ran afte rupdating a plugin that has a gemset.nix -# Usage: ./up-plugin.sh -# NOTE: Script must be ran directly as ./up-plugin, otherwise the nix-shell won't work - -set -exuo pipefail - -PLUGIN="$1" -SELF="$(dirname "$(readlink -f "$0")")" - -PL_DIR="$SELF/$PLUGIN" -TOP="$SELF/../../../../.." -TMP=$(mktemp -d) - -pushd "$TMP" - -if cat "$PL_DIR/default.nix" | grep gemdir >/dev/null; then - nix-build -A discourse.plugins.$PLUGIN.src "$TOP" - if [ -e result/Gemfile ]; then - cp result/Gemfile Gemfile - if [ -e result/Gemfile.lock ]; then - cp result/Gemfile.lock Gemfile.lock - fi - else - echo '# frozen_string_literal: true - -source "https://rubygems.org"' > Gemfile - cat result/plugin.rb | grep "^gem" >> Gemfile - fi - if [ ! -e Gemfile.lock ]; then - bundle install - fi - bundix - cp Gemfile Gemfile.lock gemset.nix "$PL_DIR" -fi - diff --git a/pkgs/servers/web-apps/discourse/update.py b/pkgs/servers/web-apps/discourse/update.py index a0b9d5e6519d..2c4fc59cec11 100755 --- a/pkgs/servers/web-apps/discourse/update.py +++ b/pkgs/servers/web-apps/discourse/update.py @@ -212,9 +212,8 @@ def update_plugins(): {'name': 'discourse-ldap-auth', 'owner': 'jonmbake'}, {'name': 'discourse-math'}, {'name': 'discourse-migratepassword', 'owner': 'discoursehosting'}, - # We can't update this automatically at the moment because the plugin.rb - # tries to load a version number which breaks bundler called by this script. - # {'name': 'discourse-prometheus'}, + {'name': 'discourse-prometheus'}, + {'name': 'discourse-openid-connect'}, {'name': 'discourse-saved-searches'}, {'name': 'discourse-solved'}, {'name': 'discourse-spoiler-alert'}, @@ -302,11 +301,19 @@ def update_plugins(): rubyenv_dir = Path(filename).parent gemfile = rubyenv_dir / "Gemfile" + version_file_regex = re.compile(r'.*File\.expand_path\("\.\./(.*)", __FILE__\)') gemfile_text = '' for line in repo.get_file('plugin.rb', repo.latest_commit_sha).splitlines(): if 'gem ' in line: gemfile_text = gemfile_text + line + os.linesep + version_file_match = version_file_regex.match(line) + if version_file_match is not None: + filename = version_file_match.groups()[0] + content = repo.get_file(filename, repo.latest_commit_sha) + with open(rubyenv_dir / filename, 'w') as f: + f.write(content) + if len(gemfile_text) > 0: if os.path.isfile(gemfile): os.remove(gemfile) From 4fb343c87e29bf1f33b49a1bcc210a57d9d42f1d Mon Sep 17 00:00:00 2001 From: talyz Date: Thu, 2 Dec 2021 11:55:07 +0100 Subject: [PATCH 026/278] discourse: update.py: Improve version handling, use pinned plugins Add a DiscourseVersion class which handles Discourse's version numbering properly when sorting - beta versions are sorted lower than their respective release versions. It can also return both its version number and equivalent git tag, removing the need for `rev2version` and manually adding `v` to the front. Using DiscourseVersion instead of LooseVersion, we can list all current version number tags from the `discourse` repo and sort them correctly, giving us the latest one, regardless of type; i.e. we don't have to filter for only release versions or beta versions anymore. This also implements the plugin pinning algorithm laid out here: https://meta.discourse.org/t/pinning-plugin-and-theme-versions-for-older-discourse-installs/156971 to make sure we don't upgrade plugins further than what's compatible with our currently packaged Discourse version. While it likely won't matter much most of the time if we continue packaging the beta versions, it could be helpful if we decide to go back to packaging release versions or if we run into issues with future upgrades. In that case, the plugins could still be updated safely even though we're not on the latest version of Discourse. --- pkgs/servers/web-apps/discourse/update.py | 150 ++++++++++++++++------ 1 file changed, 109 insertions(+), 41 deletions(-) diff --git a/pkgs/servers/web-apps/discourse/update.py b/pkgs/servers/web-apps/discourse/update.py index 2c4fc59cec11..418c89d388b6 100755 --- a/pkgs/servers/web-apps/discourse/update.py +++ b/pkgs/servers/web-apps/discourse/update.py @@ -1,5 +1,6 @@ #!/usr/bin/env nix-shell #! nix-shell -i python3 -p bundix bundler nix-update nix-universal-prefetch python3 python3Packages.requests python3Packages.click python3Packages.click-log +from __future__ import annotations import click import click_log @@ -13,16 +14,70 @@ import stat import json import requests import textwrap +from functools import total_ordering from distutils.version import LooseVersion +from itertools import zip_longest from pathlib import Path -from typing import Iterable +from typing import Union, Iterable logger = logging.getLogger(__name__) +@total_ordering +class DiscourseVersion: + """Represents a Discourse style version number and git tag. + + This takes either a tag or version string as input and + extrapolates the other. Sorting is implemented to work as expected + in regard to A.B.C.betaD version numbers - 2.0.0.beta1 is + considered lower than 2.0.0. + + """ + + tag: str = "" + version: str = "" + split_version: Iterable[Union[None, int, str]] = [] + + def __init__(self, version: str): + """Take either a tag or version number, calculate the other.""" + if version.startswith('v'): + self.tag = version + self.version = version.lstrip('v') + else: + self.tag = 'v' + version + self.version = version + self.split_version = LooseVersion(self.version).version + + def __eq__(self, other: DiscourseVersion): + """Versions are equal when their individual parts are.""" + return self.split_version == other.split_version + + def __gt__(self, other: DiscourseVersion): + """Check if this version is greater than the other. + + Goes through the parts of the version numbers from most to + least significant, only continuing on to the next if the + numbers are equal and no decision can be made. If one version + ends in 'betaX' and the other doesn't, all else being equal, + the one without 'betaX' is considered greater, since it's the + release version. + + """ + for (this_ver, other_ver) in zip_longest(self.split_version, other.split_version): + if this_ver == other_ver: + continue + if type(this_ver) is int and type(other_ver) is int: + return this_ver > other_ver + elif 'beta' in [this_ver, other_ver]: + # release version (None) is greater than beta + return this_ver is None + else: + return False + + class DiscourseRepo: - version_regex = re.compile(r'^v\d+\.\d+\.\d+.beta\d+$') + version_regex = re.compile(r'^v\d+\.\d+\.\d+(\.beta\d+)?$') _latest_commit_sha = None def __init__(self, owner: str = 'discourse', repo: str = 'discourse'): @@ -30,15 +85,14 @@ class DiscourseRepo: self.repo = repo @property - def tags(self) -> Iterable[str]: + def versions(self) -> Iterable[str]: r = requests.get(f'https://api.github.com/repos/{self.owner}/{self.repo}/git/refs/tags').json() tags = [x['ref'].replace('refs/tags/', '') for x in r] # filter out versions not matching version_regex - versions = list(filter(self.version_regex.match, tags)) - - # sort, but ignore v for sorting comparisons - versions.sort(key=lambda x: LooseVersion(x.replace('v', '')), reverse=True) + versions = filter(self.version_regex.match, tags) + versions = [DiscourseVersion(x) for x in versions] + versions.sort(reverse=True) return versions @property @@ -50,24 +104,15 @@ class DiscourseRepo: return self._latest_commit_sha - @staticmethod - def rev2version(tag: str) -> str: - """ - normalize a tag to a version number. - This obviously isn't very smart if we don't pass something that looks like a tag - :param tag: the tag to normalize - :return: a normalized version number - """ - # strip v prefix - return re.sub(r'^v', '', tag) - def get_file(self, filepath, rev): """returns file contents at a given rev :param filepath: the path to the file, relative to the repo root :param rev: the rev to fetch at :return: """ - return requests.get(f'https://raw.githubusercontent.com/{self.owner}/{self.repo}/{rev}/{filepath}').text + r = requests.get(f'https://raw.githubusercontent.com/{self.owner}/{self.repo}/{rev}/{filepath}') + r.raise_for_status() + return r.text def _call_nix_update(pkg, version): @@ -89,13 +134,13 @@ def _get_current_package_version(pkg: str): return _nix_eval(f'{pkg}.version') -def _diff_file(filepath: str, old_version: str, new_version: str): +def _diff_file(filepath: str, old_version: DiscourseVersion, new_version: DiscourseVersion): repo = DiscourseRepo() current_dir = Path(__file__).parent - old = repo.get_file(filepath, 'v' + old_version) - new = repo.get_file(filepath, 'v' + new_version) + old = repo.get_file(filepath, old_version.tag) + new = repo.get_file(filepath, new_version.tag) if old == new: click.secho(f'{filepath} is unchanged', fg='green') @@ -111,7 +156,7 @@ def _diff_file(filepath: str, old_version: str, new_version: str): text=True ) - click.secho(f'Diff for {filepath} ({old_version} -> {new_version}):', fg='bright_blue', bold=True) + click.secho(f'Diff for {filepath} ({old_version.version} -> {new_version.version}):', fg='bright_blue', bold=True) click.echo(diff_proc.stdout + '\n') return @@ -153,10 +198,10 @@ def print_diffs(rev, reverse): """ if rev == 'latest': repo = DiscourseRepo() - rev = repo.tags[0] + rev = repo.versions[0].tag - old_version = _get_current_package_version('discourse') - new_version = DiscourseRepo.rev2version(rev) + old_version = DiscourseVersion(_get_current_package_version('discourse')) + new_version = DiscourseVersion(rev) if reverse: old_version, new_version = new_version, old_version @@ -170,30 +215,32 @@ def print_diffs(rev, reverse): def update(rev): """Update gem files and version. - REV should be the git rev to update to ('vX.Y.Z') or 'latest'; - defaults to 'latest'. + REV should be the git rev to update to ('vX.Y.Z[.betaA]') or + 'latest'; defaults to 'latest'. """ repo = DiscourseRepo() if rev == 'latest': - rev = repo.tags[0] - logger.debug(f"Using rev {rev}") + version = repo.versions[0] + else: + version = DiscourseVersion(rev) - version = repo.rev2version(rev) - logger.debug(f"Using version {version}") + logger.debug(f"Using rev {version.tag}") + logger.debug(f"Using version {version.version}") rubyenv_dir = Path(__file__).parent / "rubyEnv" for fn in ['Gemfile.lock', 'Gemfile']: with open(rubyenv_dir / fn, 'w') as f: - f.write(repo.get_file(fn, rev)) + f.write(repo.get_file(fn, version.tag)) subprocess.check_output(['bundle', 'lock'], cwd=rubyenv_dir) _remove_platforms(rubyenv_dir) subprocess.check_output(['bundix'], cwd=rubyenv_dir) - _call_nix_update('discourse', repo.rev2version(rev)) + _call_nix_update('discourse', version.version) + @cli.command() def update_plugins(): @@ -229,13 +276,34 @@ def update_plugins(): repo = DiscourseRepo(owner=owner, repo=repo_name) + # implement the plugin pinning algorithm laid out here: + # https://meta.discourse.org/t/pinning-plugin-and-theme-versions-for-older-discourse-installs/156971 + # this makes sure we don't upgrade plugins to revisions that + # are incompatible with the packaged Discourse version + try: + compatibility_spec = repo.get_file('.discourse-compatibility', repo.latest_commit_sha) + versions = [(DiscourseVersion(discourse_version), plugin_rev.strip(' ')) + for [discourse_version, plugin_rev] + in [line.split(':') + for line + in compatibility_spec.splitlines()]] + discourse_version = DiscourseVersion(_get_current_package_version('discourse')) + versions = list(filter(lambda ver: ver[0] >= discourse_version, versions)) + if versions == []: + rev = repo.latest_commit_sha + else: + rev = versions[0][1] + print(rev) + except requests.exceptions.HTTPError: + rev = repo.latest_commit_sha + filename = _nix_eval(f'builtins.unsafeGetAttrPos "src" discourse.plugins.{name}') if filename is None: filename = Path(__file__).parent / 'plugins' / name / 'default.nix' filename.parent.mkdir() has_ruby_deps = False - for line in repo.get_file('plugin.rb', repo.latest_commit_sha).splitlines(): + for line in repo.get_file('plugin.rb', rev).splitlines(): if 'gem ' in line: has_ruby_deps = True break @@ -277,7 +345,7 @@ def update_plugins(): prev_commit_sha = _nix_eval(f'discourse.plugins.{name}.src.rev') - if prev_commit_sha == repo.latest_commit_sha: + if prev_commit_sha == rev: click.echo(f'Plugin {name} is already at the latest revision') continue @@ -286,14 +354,14 @@ def update_plugins(): 'nix-universal-prefetch', fetcher, '--owner', owner, '--repo', repo_name, - '--rev', repo.latest_commit_sha, + '--rev', rev, ], text=True).strip("\n") - click.echo(f"Update {name}, {prev_commit_sha} -> {repo.latest_commit_sha} in {filename}") + click.echo(f"Update {name}, {prev_commit_sha} -> {rev} in {filename}") with open(filename, 'r+') as f: content = f.read() - content = content.replace(prev_commit_sha, repo.latest_commit_sha) + content = content.replace(prev_commit_sha, rev) content = content.replace(prev_hash, new_hash) f.seek(0) f.write(content) @@ -303,14 +371,14 @@ def update_plugins(): gemfile = rubyenv_dir / "Gemfile" version_file_regex = re.compile(r'.*File\.expand_path\("\.\./(.*)", __FILE__\)') gemfile_text = '' - for line in repo.get_file('plugin.rb', repo.latest_commit_sha).splitlines(): + for line in repo.get_file('plugin.rb', rev).splitlines(): if 'gem ' in line: gemfile_text = gemfile_text + line + os.linesep version_file_match = version_file_regex.match(line) if version_file_match is not None: filename = version_file_match.groups()[0] - content = repo.get_file(filename, repo.latest_commit_sha) + content = repo.get_file(filename, rev) with open(rubyenv_dir / filename, 'w') as f: f.write(content) From 08691e47ce29320f11e67c5d45245db42b48af5d Mon Sep 17 00:00:00 2001 From: Mrinal Purohit Date: Fri, 3 Dec 2021 17:07:05 +0530 Subject: [PATCH 027/278] broot: 1.7.3 -> 1.7.4 --- pkgs/tools/misc/broot/default.nix | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/pkgs/tools/misc/broot/default.nix b/pkgs/tools/misc/broot/default.nix index 6a8ace3b2a98..2f953dfd032f 100644 --- a/pkgs/tools/misc/broot/default.nix +++ b/pkgs/tools/misc/broot/default.nix @@ -15,14 +15,14 @@ rustPlatform.buildRustPackage rec { pname = "broot"; - version = "1.7.3"; + version = "1.7.4"; src = fetchCrate { inherit pname version; - sha256 = "sha256-qu8COcMuReV8zbDK5lm378SQY+TwDy/lo9T/ldNMfz0="; + sha256 = "sha256-laFLm6A0EeprSHuqBi3p4ykgBbCinYU1sf0iRV0PY/M="; }; - cargoHash = "sha256-ndFymXT2hA4ZztePDFhAYlMh8Iwxi1/ULZYGq+W5vpE="; + cargoHash = "sha256-0ybig1S56cJjf6QGWuDasfsIiwRhK+bpWNKOjs4D7P8="; nativeBuildInputs = [ installShellFiles @@ -76,6 +76,7 @@ rustPlatform.buildRustPackage rec { meta = with lib; { description = "An interactive tree view, a fuzzy search, a balanced BFS descent and customizable commands"; homepage = "https://dystroy.org/broot/"; + changelog = "https://github.com/Canop/broot/releases/tag/v${version}"; maintainers = with maintainers; [ dywedir ]; license = with licenses; [ mit ]; }; From 46b2d1f93a519f6d7b152759fb15190eb40e766f Mon Sep 17 00:00:00 2001 From: Mrinal Purohit Date: Fri, 3 Dec 2021 17:45:33 +0530 Subject: [PATCH 028/278] broot: add package test --- pkgs/tools/misc/broot/default.nix | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/pkgs/tools/misc/broot/default.nix b/pkgs/tools/misc/broot/default.nix index 2f953dfd032f..d1cc0503efc2 100644 --- a/pkgs/tools/misc/broot/default.nix +++ b/pkgs/tools/misc/broot/default.nix @@ -73,6 +73,11 @@ rustPlatform.buildRustPackage rec { installManPage man/broot.1 ''; + doInstallCheck = true; + installCheckPhase = '' + $out/bin/broot --version | grep "${version}" + ''; + meta = with lib; { description = "An interactive tree view, a fuzzy search, a balanced BFS descent and customizable commands"; homepage = "https://dystroy.org/broot/"; From 37211393e8ccd7f8426b1aa23cbcae0cf8bc3b00 Mon Sep 17 00:00:00 2001 From: Fabian Affolter Date: Fri, 3 Dec 2021 18:09:46 +0100 Subject: [PATCH 029/278] python3Packages.moonraker-api: init at 2.0.2 --- .../python-modules/moonraker-api/default.nix | 43 +++++++++++++++++++ pkgs/top-level/python-packages.nix | 2 + 2 files changed, 45 insertions(+) create mode 100644 pkgs/development/python-modules/moonraker-api/default.nix diff --git a/pkgs/development/python-modules/moonraker-api/default.nix b/pkgs/development/python-modules/moonraker-api/default.nix new file mode 100644 index 000000000000..ac991e25f41d --- /dev/null +++ b/pkgs/development/python-modules/moonraker-api/default.nix @@ -0,0 +1,43 @@ +{ lib +, aiohttp +, buildPythonPackage +, fetchFromGitHub +, pytest-aiohttp +, pytestCheckHook +, pythonOlder +}: + +buildPythonPackage rec { + pname = "moonraker-api"; + version = "2.0.2"; + format = "setuptools"; + + disabled = pythonOlder "3.8"; + + src = fetchFromGitHub { + owner = "cmroche"; + repo = pname; + rev = "v${version}"; + sha256 = "1ODfwuO8XeleOnpp/dD+8jfEAIesXT1BuImtXTn289U="; + }; + + propagatedBuildInputs = [ + aiohttp + ]; + + checkInputs = [ + pytest-aiohttp + pytestCheckHook + ]; + + pythonImportsCheck = [ + "moonraker_api" + ]; + + meta = with lib; { + description = "Python API for the Moonraker API"; + homepage = "https://github.com/cmroche/moonraker-api"; + license = with licenses; [ gpl3Only ]; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index 2f415e50f96f..fc14e60dbb84 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -4914,6 +4914,8 @@ in { monty = callPackage ../development/python-modules/monty { }; + moonraker-api = callPackage ../development/python-modules/moonraker-api { }; + more-itertools = callPackage ../development/python-modules/more-itertools { }; moretools = callPackage ../development/python-modules/moretools { }; From 84d9b84360a2cedf8f26c5dc79610dc5d34ca637 Mon Sep 17 00:00:00 2001 From: Fabian Affolter Date: Fri, 3 Dec 2021 18:19:17 +0100 Subject: [PATCH 030/278] python3Packages.pyecowitt: init at 0.21 --- .../python-modules/pyecowitt/default.nix | 39 +++++++++++++++++++ pkgs/top-level/python-packages.nix | 2 + 2 files changed, 41 insertions(+) create mode 100644 pkgs/development/python-modules/pyecowitt/default.nix diff --git a/pkgs/development/python-modules/pyecowitt/default.nix b/pkgs/development/python-modules/pyecowitt/default.nix new file mode 100644 index 000000000000..b5f4a5fadbac --- /dev/null +++ b/pkgs/development/python-modules/pyecowitt/default.nix @@ -0,0 +1,39 @@ +{ lib +, aiohttp +, buildPythonPackage +, fetchFromGitHub +, pythonOlder +}: + +buildPythonPackage rec { + pname = "pyecowitt"; + version = "0.21"; + format = "setuptools"; + + disabled = pythonOlder "3.8"; + + src = fetchFromGitHub { + owner = "garbled1"; + repo = pname; + rev = version; + sha256 = "5VdVo6j2HZXSCWU4NvfWzyS/KJfVb7N1KSMeu8TvWaQ="; + }; + + propagatedBuildInputs = [ + aiohttp + ]; + + # Project thas no tests + doCheck = false; + + pythonImportsCheck = [ + "pyecowitt" + ]; + + meta = with lib; { + description = "Python module for the EcoWitt Protocol"; + homepage = "https://github.com/garbled1/pyecowitt"; + license = with licenses; [ asl20 ]; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index 2f415e50f96f..8e6f4f974d9b 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -6442,6 +6442,8 @@ in { pyeconet = callPackage ../development/python-modules/pyeconet { }; + pyecowitt = callPackage ../development/python-modules/pyecowitt { }; + pyedimax = callPackage ../development/python-modules/pyedimax { }; pyee = callPackage ../development/python-modules/pyee { }; From 38213f24a401bb67ec83904118248d0b56a8d6a3 Mon Sep 17 00:00:00 2001 From: Fabian Affolter Date: Fri, 3 Dec 2021 18:37:41 +0100 Subject: [PATCH 031/278] python3Packages.rki-covid-parser: init at 1.3.1 --- .../rki-covid-parser/default.nix | 51 +++++++++++++++++++ pkgs/top-level/python-packages.nix | 2 + 2 files changed, 53 insertions(+) create mode 100644 pkgs/development/python-modules/rki-covid-parser/default.nix diff --git a/pkgs/development/python-modules/rki-covid-parser/default.nix b/pkgs/development/python-modules/rki-covid-parser/default.nix new file mode 100644 index 000000000000..ec201fcd9f57 --- /dev/null +++ b/pkgs/development/python-modules/rki-covid-parser/default.nix @@ -0,0 +1,51 @@ +{ lib +, aiohttp +, aioresponses +, buildPythonPackage +, fetchFromGitHub +, pytest-aiohttp +, pytestCheckHook +, pythonOlder +}: + +buildPythonPackage rec { + pname = "rki-covid-parser"; + version = "1.3.1"; + format = "pyproject"; + + disabled = pythonOlder "3.6"; + + src = fetchFromGitHub { + owner = "thebino"; + repo = pname; + rev = "v${version}"; + sha256 = "UTLWBbNjvRuBwc5JD8l+izJu5vODLwS16ExdxUPT14A="; + }; + + propagatedBuildInputs = [ + aiohttp + ]; + + checkInputs = [ + aioresponses + pytest-aiohttp + pytestCheckHook + ]; + + disabledTestPaths = [ + # Tests require netowrk access + "tests/test_districts.py" + "tests/test_endpoint_availibility.py" + ]; + + pythonImportsCheck = [ + "rki_covid_parser" + ]; + + meta = with lib; { + description = "Python module for working with data from the Robert-Koch Institut"; + homepage = "https://github.com/thebino/rki-covid-parser"; + license = with licenses; [ asl20 ]; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index 2f415e50f96f..0a96ad1cfd5c 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -8292,6 +8292,8 @@ in { rjsmin = callPackage ../development/python-modules/rjsmin { }; + rki-covid-parser = callPackage ../development/python-modules/rki-covid-parser { }; + rl-coach = callPackage ../development/python-modules/rl-coach { }; rlp = callPackage ../development/python-modules/rlp { }; From ab10be129eed0f7a5c832b85c561262a3156d559 Mon Sep 17 00:00:00 2001 From: Fabian Affolter Date: Fri, 3 Dec 2021 19:26:08 +0100 Subject: [PATCH 032/278] python3Packages.pysolcast: init at 1.0.7 --- .../python-modules/pysolcast/default.nix | 61 +++++++++++++++++++ pkgs/top-level/python-packages.nix | 2 + 2 files changed, 63 insertions(+) create mode 100644 pkgs/development/python-modules/pysolcast/default.nix diff --git a/pkgs/development/python-modules/pysolcast/default.nix b/pkgs/development/python-modules/pysolcast/default.nix new file mode 100644 index 000000000000..fea0b68dcce9 --- /dev/null +++ b/pkgs/development/python-modules/pysolcast/default.nix @@ -0,0 +1,61 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, isodate +, pytestCheckHook +, pythonOlder +, pyyaml +, requests +, responses +, setuptools-scm +}: + +buildPythonPackage rec { + pname = "pysolcast"; + version = "1.0.7"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "mcaulifn"; + repo = "solcast"; + rev = "v${version}"; + sha256 = "J4D7W89Qz1Nv4DeqOmHVAWfmThlY5puBjSClRkfwhVw="; + }; + + SETUPTOOLS_SCM_PRETEND_VERSION = version; + + nativeBuildInputs = [ + setuptools-scm + ]; + + propagatedBuildInputs = [ + isodate + pyyaml + requests + ]; + + checkInputs = [ + pytestCheckHook + responses + ]; + + postPatch = '' + substituteInPlace setup.cfg \ + --replace "pytest-runner" "" + ''; + + pythonImportsCheck = [ + "pysolcast" + ]; + + meta = with lib; { + description = "Python library for interacting with the Solcast API"; + homepage = "https://github.com/mcaulifn/solcast"; + # No license statement present + # https://github.com/mcaulifn/solcast/issues/70 + license = with licenses; [ unfree ]; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index 2f415e50f96f..b42beaed0623 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -5845,6 +5845,8 @@ in { pyskyqhub = callPackage ../development/python-modules/pyskyqhub { }; + pysolcast = callPackage ../development/python-modules/pysolcast { }; + pysyncthru = callPackage ../development/python-modules/pysyncthru { }; python-codon-tables = callPackage ../development/python-modules/python-codon-tables { }; From c9d0f80597cd9fdedfaf6925844aedca6c4faf25 Mon Sep 17 00:00:00 2001 From: Fabian Affolter Date: Fri, 3 Dec 2021 21:51:21 +0100 Subject: [PATCH 033/278] python3Packages.pyhomeworks: init at 0.0.6 --- .../python-modules/pyhomeworks/default.nix | 33 +++++++++++++++++++ pkgs/top-level/python-packages.nix | 2 ++ 2 files changed, 35 insertions(+) create mode 100644 pkgs/development/python-modules/pyhomeworks/default.nix diff --git a/pkgs/development/python-modules/pyhomeworks/default.nix b/pkgs/development/python-modules/pyhomeworks/default.nix new file mode 100644 index 000000000000..085107c4ad26 --- /dev/null +++ b/pkgs/development/python-modules/pyhomeworks/default.nix @@ -0,0 +1,33 @@ +{ lib +, buildPythonPackage +, fetchPypi +, pythonOlder +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "pyhomeworks"; + version = "0.0.6"; + format = "setuptools"; + + disabled = pythonOlder "3.6"; + + src = fetchPypi { + inherit pname version; + sha256 = "Eqbm8274B2hBuF+mREe8lqGhpzZExPJ29jzvwB5RNR8="; + }; + + # Project has no real tests + doCheck = false; + + pythonImportsCheck = [ + "pyhomeworks" + ]; + + meta = with lib; { + description = "Python interface to Lutron Homeworks Series 4/8"; + homepage = "https://github.com/dubnom/pyhomeworks"; + license = licenses.mit; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index 2f415e50f96f..7c37d9bf7fec 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -6610,6 +6610,8 @@ in { pyhomepilot = callPackage ../development/python-modules/pyhomepilot { }; + pyhomeworks = callPackage ../development/python-modules/pyhomeworks { }; + pyhs100 = callPackage ../development/python-modules/pyhs100 { }; pyi2cflash = callPackage ../development/python-modules/pyi2cflash { }; From 5c6d41e19c506de662d2bd9e7b3e5bfdcbea50c1 Mon Sep 17 00:00:00 2001 From: Fabian Affolter Date: Fri, 3 Dec 2021 21:52:20 +0100 Subject: [PATCH 034/278] home-assistant: update component-packages --- pkgs/servers/home-assistant/component-packages.nix | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pkgs/servers/home-assistant/component-packages.nix b/pkgs/servers/home-assistant/component-packages.nix index 4367f423cce9..5fccf5816d8c 100644 --- a/pkgs/servers/home-assistant/component-packages.nix +++ b/pkgs/servers/home-assistant/component-packages.nix @@ -370,7 +370,7 @@ "homekit_controller" = ps: with ps; [ aiohomekit aiohttp-cors ifaddr zeroconf ]; "homematic" = ps: with ps; [ pyhomematic ]; "homematicip_cloud" = ps: with ps; [ homematicip ]; - "homeworks" = ps: with ps; [ ]; # missing inputs: pyhomeworks + "homeworks" = ps: with ps; [ pyhomeworks ]; "honeywell" = ps: with ps; [ somecomfort ]; "horizon" = ps: with ps; [ ]; # missing inputs: horimote "hp_ilo" = ps: with ps; [ python-hpilo ]; From ad9b07370e59ae1e3f8288d9217bd3b19795b793 Mon Sep 17 00:00:00 2001 From: Fabian Affolter Date: Fri, 3 Dec 2021 22:05:11 +0100 Subject: [PATCH 035/278] python3Packages.luxor: init at 0.0.1 --- .../python-modules/luxor/default.nix | 41 +++++++++++++++++++ pkgs/top-level/python-packages.nix | 2 + 2 files changed, 43 insertions(+) create mode 100644 pkgs/development/python-modules/luxor/default.nix diff --git a/pkgs/development/python-modules/luxor/default.nix b/pkgs/development/python-modules/luxor/default.nix new file mode 100644 index 000000000000..ebebdd0d9bc9 --- /dev/null +++ b/pkgs/development/python-modules/luxor/default.nix @@ -0,0 +1,41 @@ +{ lib +, aiohttp +, buildPythonPackage +, fetchPypi +, pythonOlder +, pytest-aiohttp +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "luxor"; + version = "0.0.1"; + format = "setuptools"; + + disabled = pythonOlder "3.6"; + + src = fetchPypi { + inherit pname version; + sha256 = "GIwVEOKZAudTu2M3OM4LFVR8e22q52m/AN0anskdmWQ="; + }; + + propagatedBuildInputs = [ + aiohttp + ]; + + checkInputs = [ + pytest-aiohttp + pytestCheckHook + ]; + + pythonImportsCheck = [ + "luxor" + ]; + + meta = with lib; { + description = "Python module to control FX Luminaire controllers"; + homepage = "https://github.com/pbozeman/luxor"; + license = licenses.asl20; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index 2f415e50f96f..5dcb67b317ff 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -4579,6 +4579,8 @@ in { luftdaten = callPackage ../development/python-modules/luftdaten { }; + luxor = callPackage ../development/python-modules/luxor { }; + luxtronik = callPackage ../development/python-modules/luxtronik { }; lupa = callPackage ../development/python-modules/lupa { }; From 274f0a71fe7d31309abe38a079ea3af2af21809a Mon Sep 17 00:00:00 2001 From: Fabian Affolter Date: Fri, 3 Dec 2021 23:13:36 +0100 Subject: [PATCH 036/278] python3Packages.pescea: init at 1.0.10 --- .../python-modules/pescea/default.nix | 58 +++++++++++++++++++ pkgs/top-level/python-packages.nix | 2 + 2 files changed, 60 insertions(+) create mode 100644 pkgs/development/python-modules/pescea/default.nix diff --git a/pkgs/development/python-modules/pescea/default.nix b/pkgs/development/python-modules/pescea/default.nix new file mode 100644 index 000000000000..c4a6feb6896c --- /dev/null +++ b/pkgs/development/python-modules/pescea/default.nix @@ -0,0 +1,58 @@ +{ lib +, async-timeout +, buildPythonPackage +, fetchFromGitHub +, pytest-asyncio +, pytest-mock +, pytestCheckHook +, pythonOlder +}: + +buildPythonPackage rec { + pname = "pescea"; + version = "1.0.10"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "lazdavila"; + repo = pname; + rev = "v${version}"; + sha256 = "Q38mLGjrRdXEvT+PCNsil1e2p0mmM0Xy8TUx9QOnFRA="; + }; + + propagatedBuildInputs = [ + async-timeout + ]; + + checkInputs = [ + pytest-asyncio + pytest-mock + pytestCheckHook + ]; + + postPatch = '' + # https://github.com/lazdavila/pescea/pull/1 + substituteInPlace setup.py \ + --replace '"asyncio",' "" + ''; + + disabledTests = [ + # AssertionError: assert ... + "test_updates_while_busy" + # Test requires network access + "test_flow_control" + ]; + + pythonImportsCheck = [ + "pescea" + ]; + + meta = with lib; { + description = "Python interface to Escea fireplaces"; + homepage = "https://github.com/lazdavila/pescea"; + license = licenses.gpl3Plus; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index 2f415e50f96f..4fda3ff4637f 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -5682,6 +5682,8 @@ in { persisting-theory = callPackage ../development/python-modules/persisting-theory { }; + pescea = callPackage ../development/python-modules/pescea { }; + pex = callPackage ../development/python-modules/pex { }; pexif = callPackage ../development/python-modules/pexif { }; From ef010a832e921dcf551fd011349214a024792066 Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Sun, 5 Dec 2021 07:43:22 +1100 Subject: [PATCH 037/278] rPackages.V8: fix build on aarch64-linux --- pkgs/development/r-modules/default.nix | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index 60d69c002bb9..18f94da96699 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -1108,6 +1108,11 @@ let export LIB_DIR=${pkgs.v8}/lib patchShebangs configure ''; + + R_MAKEVARS_SITE = lib.optionalString (pkgs.system == "aarch64-linux") + (pkgs.writeText "Makevars" '' + CXX14PICFLAGS = -fPIC + ''); }); acs = old.acs.overrideDerivation (attrs: { From 47d6b71b4c2116968ae4ecc3ebe1348012cff654 Mon Sep 17 00:00:00 2001 From: Fabian Affolter Date: Sun, 5 Dec 2021 01:00:23 +0100 Subject: [PATCH 038/278] python3Packages.pykeyatome: init at 1.1.2 --- .../python-modules/pykeyatome/default.nix | 59 +++++++++++++++++++ pkgs/top-level/python-packages.nix | 2 + 2 files changed, 61 insertions(+) create mode 100644 pkgs/development/python-modules/pykeyatome/default.nix diff --git a/pkgs/development/python-modules/pykeyatome/default.nix b/pkgs/development/python-modules/pykeyatome/default.nix new file mode 100644 index 000000000000..8dd6d7fc45d4 --- /dev/null +++ b/pkgs/development/python-modules/pykeyatome/default.nix @@ -0,0 +1,59 @@ +{ lib +, buildPythonPackage +, fake-useragent +, fetchFromGitHub +, pytest-aiohttp +, pytestCheckHook +, pythonOlder +, requests +, requests-mock +, responses +, simplejson +}: + +buildPythonPackage rec { + pname = "pykeyatome"; + version = "1.1.2"; + format = "setuptools"; + + disabled = pythonOlder "3.8"; + + src = fetchFromGitHub { + owner = "jugla"; + repo = "pyKeyAtome"; + rev = "V${version}"; + sha256 = "sha256-5aKZaS+BFKR1ldAY3BlS/oqYGz1C+ZRkNL9ez/etWh4="; + }; + + propagatedBuildInputs = [ + fake-useragent + requests + simplejson + ]; + + checkInputs = [ + pytest-aiohttp + pytestCheckHook + requests-mock + responses + ]; + + disabledTests = [ + # Tests require network access + "test_consumption" + "test_get_live" + "test_login" + "test_relog_after_session_down" + ]; + + pythonImportsCheck = [ + "pykeyatome" + ]; + + meta = with lib; { + description = "Python module to get data from Atome Key"; + homepage = "hhttps://github.com/jugla/pyKeyAtome"; + license = licenses.mit; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index 6569bf250ddb..3fda5e88e2bc 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -6674,6 +6674,8 @@ in { pykerberos = callPackage ../development/python-modules/pykerberos { }; + pykeyatome = callPackage ../development/python-modules/pykeyatome { }; + pykira = callPackage ../development/python-modules/pykira { }; pykka = callPackage ../development/python-modules/pykka { }; From b604d6e02e30538935470bb5ec9c8a4307738f89 Mon Sep 17 00:00:00 2001 From: Fabian Affolter Date: Sun, 5 Dec 2021 12:20:50 +0100 Subject: [PATCH 039/278] python3Packages.dingz: init at 0.5.0 --- .../python-modules/dingz/default.nix | 43 +++++++++++++++++++ pkgs/top-level/python-packages.nix | 2 + 2 files changed, 45 insertions(+) create mode 100644 pkgs/development/python-modules/dingz/default.nix diff --git a/pkgs/development/python-modules/dingz/default.nix b/pkgs/development/python-modules/dingz/default.nix new file mode 100644 index 000000000000..c02746695e88 --- /dev/null +++ b/pkgs/development/python-modules/dingz/default.nix @@ -0,0 +1,43 @@ +{ lib +, aiohttp +, async-timeout +, buildPythonPackage +, click +, fetchFromGitHub +, pythonOlder +}: + +buildPythonPackage rec { + pname = "dingz"; + version = "0.5.0"; + format = "setuptools"; + + disabled = pythonOlder "3.8"; + + src = fetchFromGitHub { + owner = "home-assistant-ecosystem"; + repo = "python-dingz"; + rev = version; + sha256 = "sha256-bCytQwLWw8D1UkKb/3LQ301eDCkVR4alD6NHjTs6I+4="; + }; + + propagatedBuildInputs = [ + aiohttp + async-timeout + click + ]; + + # Project has no tests + doCheck = false; + + pythonImportsCheck = [ + "dingz" + ]; + + meta = with lib; { + description = "Python API for interacting with Dingz devices"; + homepage = "https://github.com/home-assistant-ecosystem/python-dingz"; + license = with licenses; [ mit ]; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index 6569bf250ddb..cf5ede310951 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -2078,6 +2078,8 @@ in { dill = callPackage ../development/python-modules/dill { }; + dingz = callPackage ../development/python-modules/dingz { }; + diofant = callPackage ../development/python-modules/diofant { }; dipy = callPackage ../development/python-modules/dipy { }; From c1d0a084a990f6057988dfd1e4de6de1cf847f5d Mon Sep 17 00:00:00 2001 From: Fabian Affolter Date: Sun, 5 Dec 2021 13:22:15 +0100 Subject: [PATCH 040/278] python3Packages.hahomematic: init at 0.0.16 --- .../python-modules/hahomematic/default.nix | 43 +++++++++++++++++++ pkgs/top-level/python-packages.nix | 2 + 2 files changed, 45 insertions(+) create mode 100644 pkgs/development/python-modules/hahomematic/default.nix diff --git a/pkgs/development/python-modules/hahomematic/default.nix b/pkgs/development/python-modules/hahomematic/default.nix new file mode 100644 index 000000000000..3b50bd1dfd54 --- /dev/null +++ b/pkgs/development/python-modules/hahomematic/default.nix @@ -0,0 +1,43 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, aiohttp +, pythonOlder +, voluptuous +, websocket-client +, xmltodict +}: + +buildPythonPackage rec { + pname = "hahomematic"; + version = "0.0.16"; + format = "setuptools"; + + disabled = pythonOlder "3.8"; + + src = fetchFromGitHub { + owner = "danielperna84"; + repo = pname; + rev = version; + sha256 = "sha256-c+0CjERZX55A1Y73tqf6awe68TPw5pqXEIlBD5C8L8c="; + }; + + propagatedBuildInputs = [ + aiohttp + voluptuous + ]; + + # Project has no tests + doCheck = false; + + pythonImportsCheck = [ + "hahomematic" + ]; + + meta = with lib; { + description = "Python module to interact with HomeMatic devices"; + homepage = "https://github.com/danielperna84/hahomematic"; + license = with licenses; [ mit ]; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index 6569bf250ddb..074b1c01f890 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -3490,6 +3490,8 @@ in { ha-philipsjs = callPackage ../development/python-modules/ha-philipsjs{ }; + hahomematic = callPackage ../development/python-modules/hahomematic { }; + halo = callPackage ../development/python-modules/halo { }; halohome = callPackage ../development/python-modules/halohome { }; From 6529116b050880742d7d3fa578cf64ae3fcbe9f7 Mon Sep 17 00:00:00 2001 From: Fabian Affolter Date: Sun, 5 Dec 2021 13:42:01 +0100 Subject: [PATCH 041/278] python3Packages.reolink: init at 0.0.53 --- .../python-modules/reolink/default.nix | 67 +++++++++++++++++++ pkgs/top-level/python-packages.nix | 2 + 2 files changed, 69 insertions(+) create mode 100644 pkgs/development/python-modules/reolink/default.nix diff --git a/pkgs/development/python-modules/reolink/default.nix b/pkgs/development/python-modules/reolink/default.nix new file mode 100644 index 000000000000..3616eb1e3c0f --- /dev/null +++ b/pkgs/development/python-modules/reolink/default.nix @@ -0,0 +1,67 @@ +{ lib +, aiohttp +, aiounittest +, buildPythonPackage +, fetchFromGitHub +, ffmpeg-python +, pytestCheckHook +, pythonOlder +, requests +}: + +buildPythonPackage rec { + pname = "reolink"; + version = "0.0.53"; + format = "setuptools"; + + disabled = pythonOlder "3.8"; + + src = fetchFromGitHub { + owner = "fwestenberg"; + repo = pname; + # https://github.com/fwestenberg/reolink/issues/78 + rev = "0053"; + sha256 = "sha256-kEG+kRTWaC6eQbmlasAWIESFdKPoxQCdZLRrQwb2aRU="; + }; + + propagatedBuildInputs = [ + aiohttp + ffmpeg-python + requests + ]; + + checkInputs = [ + aiounittest + pytestCheckHook + ]; + + postPatch = '' + # Packages in nixpkgs is different than the module name + substituteInPlace setup.py \ + --replace "ffmpeg" "ffmpeg-python" + ''; + + pytestFlagsArray = [ + "test.py" + ]; + + disabledTests = [ + # Tests require network access + "test1_settings" + "test2_states" + "test3_images" + "test4_properties" + "test_succes" + ]; + + pythonImportsCheck = [ + "reolink" + ]; + + meta = with lib; { + description = "Python module to interact with the Reolink IP camera API"; + homepage = "https://github.com/fwestenberg/reolink"; + license = with licenses; [ mit ]; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index 6569bf250ddb..6ac71e1240e8 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -8194,6 +8194,8 @@ in { rencode = callPackage ../development/python-modules/rencode { }; + reolink = callPackage ../development/python-modules/reolink { }; + reparser = callPackage ../development/python-modules/reparser { }; repeated_test = callPackage ../development/python-modules/repeated_test { }; From 4d336c5202ef9633e5069d3143a940714af03265 Mon Sep 17 00:00:00 2001 From: Fabian Affolter Date: Sun, 5 Dec 2021 14:05:19 +0100 Subject: [PATCH 042/278] python3Packages.seatconnect: init at 1.1.3 --- .../python-modules/seatconnect/default.nix | 63 +++++++++++++++++++ pkgs/top-level/python-packages.nix | 2 + 2 files changed, 65 insertions(+) create mode 100644 pkgs/development/python-modules/seatconnect/default.nix diff --git a/pkgs/development/python-modules/seatconnect/default.nix b/pkgs/development/python-modules/seatconnect/default.nix new file mode 100644 index 000000000000..7adef77210ab --- /dev/null +++ b/pkgs/development/python-modules/seatconnect/default.nix @@ -0,0 +1,63 @@ +{ lib +, aiohttp +, beautifulsoup4 +, buildPythonPackage +, cryptography +, fetchFromGitHub +, lxml +, pyjwt +, pythonOlder +, setuptools-scm +, xmltodict +}: + +buildPythonPackage rec { + pname = "seatconnect"; + version = "1.1.3"; + format = "setuptools"; + + disabled = pythonOlder "3.8"; + + src = fetchFromGitHub { + owner = "farfar"; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-EOaFZch/C9N4lacZ4IqIJUVSaEn8wOFN/WN6WOL/1mo="; + }; + + SETUPTOOLS_SCM_PRETEND_VERSION = version; + + nativeBuildInputs = [ + setuptools-scm + ]; + + propagatedBuildInputs = [ + aiohttp + beautifulsoup4 + cryptography + lxml + pyjwt + xmltodict + ]; + + postPatch = '' + substituteInPlace setup.py \ + --replace "'pytest>=5,<6'," "" + substituteInPlace requirements.txt \ + --replace "pytest-asyncio" "" + ''; + + # Project only has a dummy test + doCheck = false; + + pythonImportsCheck = [ + "seatconnect" + ]; + + meta = with lib; { + description = "Python module to communicate with Seat Connect"; + homepage = "https://github.com/farfar/seatconnect"; + license = with licenses; [ asl20 ]; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index 6569bf250ddb..2bcffbc67cb6 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -8550,6 +8550,8 @@ in { seaserv = toPythonModule pkgs.seafile-server; + seatconnect = callPackage ../development/python-modules/seatconnect { }; + seccomp = callPackage ../development/python-modules/seccomp { }; secp256k1 = callPackage ../development/python-modules/secp256k1 { From e6d3584063ee236b4beedcbc6f4e259573564157 Mon Sep 17 00:00:00 2001 From: Fabian Affolter Date: Sun, 5 Dec 2021 14:28:20 +0100 Subject: [PATCH 043/278] python3Packages.skodaconnect: init at 1.1.12 --- .../python-modules/skodaconnect/default.nix | 61 +++++++++++++++++++ pkgs/top-level/python-packages.nix | 2 + 2 files changed, 63 insertions(+) create mode 100644 pkgs/development/python-modules/skodaconnect/default.nix diff --git a/pkgs/development/python-modules/skodaconnect/default.nix b/pkgs/development/python-modules/skodaconnect/default.nix new file mode 100644 index 000000000000..5196651959c7 --- /dev/null +++ b/pkgs/development/python-modules/skodaconnect/default.nix @@ -0,0 +1,61 @@ +{ lib +, aiohttp +, beautifulsoup4 +, buildPythonPackage +, cryptography +, fetchFromGitHub +, lxml +, pyjwt +, pythonOlder +, setuptools-scm +}: + +buildPythonPackage rec { + pname = "skodaconnect"; + version = "1.1.12"; + format = "setuptools"; + + disabled = pythonOlder "3.8"; + + src = fetchFromGitHub { + owner = "lendy007"; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-OKNw+t8S6rRQDKNRBN/CU36OwWojuOH6mMQ5QItkkb8="; + }; + + SETUPTOOLS_SCM_PRETEND_VERSION = version; + + nativeBuildInputs = [ + setuptools-scm + ]; + + propagatedBuildInputs = [ + aiohttp + beautifulsoup4 + cryptography + lxml + pyjwt + ]; + + postPatch = '' + substituteInPlace setup.py \ + --replace "'pytest>=5,<6'," "" + substituteInPlace requirements.txt \ + --replace "pytest-asyncio" "" + ''; + + # Project has no tests + doCheck = false; + + pythonImportsCheck = [ + "skodaconnect" + ]; + + meta = with lib; { + description = "Python module to communicate with Skoda Connect"; + homepage = "https://github.com/lendy007/skodaconnect"; + license = with licenses; [ asl20 ]; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index 6569bf250ddb..b6a603dff3ef 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -8717,6 +8717,8 @@ in { sklearn-deap = callPackage ../development/python-modules/sklearn-deap { }; + skodaconnect = callPackage ../development/python-modules/skodaconnect { }; + skorch = callPackage ../development/python-modules/skorch { }; skybellpy = callPackage ../development/python-modules/skybellpy { }; From 30d18d1889e7898c6163651e6b984601e72c4329 Mon Sep 17 00:00:00 2001 From: Fabian Affolter Date: Sun, 5 Dec 2021 15:59:54 +0100 Subject: [PATCH 044/278] python3Packages.lightwave2: init at 0.7.7 --- .../python-modules/lightwave2/default.nix | 37 +++++++++++++++++++ pkgs/top-level/python-packages.nix | 2 + 2 files changed, 39 insertions(+) create mode 100644 pkgs/development/python-modules/lightwave2/default.nix diff --git a/pkgs/development/python-modules/lightwave2/default.nix b/pkgs/development/python-modules/lightwave2/default.nix new file mode 100644 index 000000000000..9246c6d42dac --- /dev/null +++ b/pkgs/development/python-modules/lightwave2/default.nix @@ -0,0 +1,37 @@ +{ lib +, aiohttp +, buildPythonPackage +, fetchPypi +, pythonOlder +}: + +buildPythonPackage rec { + pname = "lightwave2"; + version = "0.7.7"; + format = "setuptools"; + + disabled = pythonOlder "3.8"; + + src = fetchPypi { + inherit pname version; + sha256 = "sha256-89REmMsZ79OsjhxAuxyTfRKy1+4cYDB9suiZLTXNntA="; + }; + + propagatedBuildInputs = [ + aiohttp + ]; + + # Project has no tests + doCheck = false; + + pythonImportsCheck = [ + "lightwave2" + ]; + + meta = with lib; { + description = "Python library to interact with LightWaveRF 2nd Gen lights and switches"; + homepage = "https://github.com/bigbadblunt/lightwave2"; + license = licenses.mit; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index 6569bf250ddb..aad6bd8a823d 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -4490,6 +4490,8 @@ in { lightparam = callPackage ../development/python-modules/lightparam { }; + lightwave2 = callPackage ../development/python-modules/lightwave2 { }; + lima = callPackage ../development/python-modules/lima { }; limiter= callPackage ../development/python-modules/limiter { }; From eea46bee36c8b9af66bff2226a88c56aa8305545 Mon Sep 17 00:00:00 2001 From: Fabian Affolter Date: Sun, 5 Dec 2021 16:38:54 +0100 Subject: [PATCH 045/278] python3Packages.wavinsentio: init at 0.3.0 --- .../python-modules/wavinsentio/default.nix | 37 +++++++++++++++++++ pkgs/top-level/python-packages.nix | 2 + 2 files changed, 39 insertions(+) create mode 100644 pkgs/development/python-modules/wavinsentio/default.nix diff --git a/pkgs/development/python-modules/wavinsentio/default.nix b/pkgs/development/python-modules/wavinsentio/default.nix new file mode 100644 index 000000000000..21dbe7b8ae82 --- /dev/null +++ b/pkgs/development/python-modules/wavinsentio/default.nix @@ -0,0 +1,37 @@ +{ lib +, buildPythonPackage +, fetchPypi +, pythonOlder +, requests +}: + +buildPythonPackage rec { + pname = "wavinsentio"; + version = "0.3.0"; + format = "setuptools"; + + disabled = pythonOlder "3.8"; + + src = fetchPypi { + inherit pname version; + sha256 = "sha256-3mzK+YBRhLDqcEJDyMK43Le6eCH3B89unXpuu8nIe1g="; + }; + + propagatedBuildInputs = [ + requests + ]; + + # Project has no tests + doCheck = false; + + pythonImportsCheck = [ + "wavinsentio" + ]; + + meta = with lib; { + description = "Python module to interact with the Wavin Sentio underfloor heating system"; + homepage = "https://github.com/djerik/wavinsentio"; + license = with licenses; [ mit ]; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index b05183e99425..b46480028fe4 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -9970,6 +9970,8 @@ in { wavefile = callPackage ../development/python-modules/wavefile { }; + wavinsentio = callPackage ../development/python-modules/wavinsentio { }; + wazeroutecalculator = callPackage ../development/python-modules/wazeroutecalculator { }; wcmatch = callPackage ../development/python-modules/wcmatch { }; From 591ada5c7af8ba44101d3192b5384f6caebc277d Mon Sep 17 00:00:00 2001 From: Fabian Affolter Date: Sun, 5 Dec 2021 16:45:07 +0100 Subject: [PATCH 046/278] python3Packages.aiobroadlink: init at 0.1.3 --- .../python-modules/aiobroadlink/default.nix | 37 +++++++++++++++++++ pkgs/top-level/python-packages.nix | 2 + 2 files changed, 39 insertions(+) create mode 100644 pkgs/development/python-modules/aiobroadlink/default.nix diff --git a/pkgs/development/python-modules/aiobroadlink/default.nix b/pkgs/development/python-modules/aiobroadlink/default.nix new file mode 100644 index 000000000000..d921f3c08049 --- /dev/null +++ b/pkgs/development/python-modules/aiobroadlink/default.nix @@ -0,0 +1,37 @@ +{ lib +, buildPythonPackage +, cryptography +, fetchPypi +, pythonOlder +}: + +buildPythonPackage rec { + pname = "aiobroadlink"; + version = "0.1.3"; + format = "setuptools"; + + disabled = pythonOlder "3.8"; + + src = fetchPypi { + inherit pname version; + sha256 = "sha256-uTUtDhL9VtWZE+Y6ZJY4prmlE+Yh2UrCg5+eSyAQzMk="; + }; + + propagatedBuildInputs = [ + cryptography + ]; + + # Project has no tests + doCheck = false; + + pythonImportsCheck = [ + "aiobroadlink" + ]; + + meta = with lib; { + description = "Python module to control various Broadlink devices"; + homepage = "https://github.com/frawau/aiobroadlink"; + license = with licenses; [ mit ]; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index b05183e99425..f8efebc4eb1e 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -317,6 +317,8 @@ in { aiobotocore = callPackage ../development/python-modules/aiobotocore { }; + aiobroadlink = callPackage ../development/python-modules/aiobroadlink { }; + aiohue = callPackage ../development/python-modules/aiohue { }; aiohwenergy = callPackage ../development/python-modules/aiohwenergy { }; From 2b5946b87ad8cf9ce2940bf4282340740c28b070 Mon Sep 17 00:00:00 2001 From: Josh Kingsley Date: Mon, 6 Dec 2021 01:57:43 +0200 Subject: [PATCH 047/278] calibre: 5.31.1 -> 5.33.2 --- pkgs/applications/misc/calibre/default.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/applications/misc/calibre/default.nix b/pkgs/applications/misc/calibre/default.nix index a991d7c0d13d..3e1bdaec9d39 100644 --- a/pkgs/applications/misc/calibre/default.nix +++ b/pkgs/applications/misc/calibre/default.nix @@ -27,14 +27,14 @@ mkDerivation rec { pname = "calibre"; - version = "5.31.1"; + version = "5.33.2"; src = fetchurl { url = "https://download.calibre-ebook.com/${version}/${pname}-${version}.tar.xz"; - sha256 = "sha256-3LGEWuHms54ji9GWSyLl8cFWIRBqHY1Jf/CNPJOywrU="; + sha256 = "sha256-wtt3ucCaFq9wLk79CeCz20tMM6AbLtZ4Ln6TxOx0dvI="; }; - # https://sources.debian.org/patches/calibre/5.31.1+dfsg-1 + # https://sources.debian.org/patches/calibre/5.33.2+dfsg-1 patches = [ # allow for plugin update check, but no calibre version check (fetchpatch { From 53971925f984367325943d65f68e01e533c7b71c Mon Sep 17 00:00:00 2001 From: Vonfry Date: Mon, 6 Dec 2021 09:37:56 +0800 Subject: [PATCH 048/278] libime: 1.0.7 -> 1.0.10 --- pkgs/development/libraries/libime/default.nix | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/pkgs/development/libraries/libime/default.nix b/pkgs/development/libraries/libime/default.nix index 4f0caa7cc33c..b8efaf8017d2 100644 --- a/pkgs/development/libraries/libime/default.nix +++ b/pkgs/development/libraries/libime/default.nix @@ -18,21 +18,21 @@ let url = "https://download.fcitx-im.org/data/lm_sc.3gm.arpa-${arpaVer}.tar.bz2"; sha256 = "0bqy3l7mif0yygjrcm65qallszgn17mvgyxhvz7a54zaamyan6vm"; }; - dictVer = "20210402"; + dictVer = "20211021"; dict = fetchurl { url = "https://download.fcitx-im.org/data/dict.utf8-${dictVer}.tar.xz"; - sha256 = "sha256-gYz7tama5bQMJwe2FYc09KEBlkRIU0AMvWsUUFWS2A0="; + sha256 = "sha256-MAWX5vf3n3iEgP1mXeige/6QInBItafjn0D0OmKpgd8="; }; in stdenv.mkDerivation rec { pname = "libime"; - version = "1.0.7"; + version = "1.0.10"; src = fetchFromGitHub { owner = "fcitx"; repo = "libime"; rev = version; - sha256 = "sha256-q/SXS6pT4vBkCkCTarPVHrZPXijYnc2t51YGRvzQ0FY="; + sha256 = "sha256-dHlya2vC3ugslP0K2oIHadcZQTmzt+tzNMkLy8V5M1Q="; fetchSubmodules = true; }; From 599da23debe2e6c12198a810a3ec52e54248902c Mon Sep 17 00:00:00 2001 From: Vonfry Date: Mon, 6 Dec 2021 08:45:41 +0800 Subject: [PATCH 049/278] fcitx5: 5.0.9 -> 5.0.11 --- pkgs/tools/inputmethods/fcitx5/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/tools/inputmethods/fcitx5/default.nix b/pkgs/tools/inputmethods/fcitx5/default.nix index 85b652577437..bae542cefbae 100644 --- a/pkgs/tools/inputmethods/fcitx5/default.nix +++ b/pkgs/tools/inputmethods/fcitx5/default.nix @@ -41,13 +41,13 @@ let in stdenv.mkDerivation rec { pname = "fcitx5"; - version = "5.0.9"; + version = "5.0.11"; src = fetchFromGitHub { owner = "fcitx"; repo = pname; rev = version; - sha256 = "161xgm2fs51v8l46raz6xxkjmshpgaaax64lz8208m7fcd32ll3a"; + sha256 = "sha256-81FuV6wBDQcOG5TLEJBqSG09BRgLekAo3tqZA40AQYo="; }; prePatch = '' From f6d0450c3deb5b401dff70667a687466bbb9dfd2 Mon Sep 17 00:00:00 2001 From: Vonfry Date: Mon, 6 Dec 2021 08:47:49 +0800 Subject: [PATCH 050/278] fcitx5-qt: 5.0.6 -> 5.0.8 --- pkgs/tools/inputmethods/fcitx5/fcitx5-qt.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/tools/inputmethods/fcitx5/fcitx5-qt.nix b/pkgs/tools/inputmethods/fcitx5/fcitx5-qt.nix index 40465d55e400..15b6f51126d9 100644 --- a/pkgs/tools/inputmethods/fcitx5/fcitx5-qt.nix +++ b/pkgs/tools/inputmethods/fcitx5/fcitx5-qt.nix @@ -12,13 +12,13 @@ mkDerivation rec { pname = "fcitx5-qt"; - version = "5.0.6"; + version = "5.0.8"; src = fetchFromGitHub { owner = "fcitx"; repo = "fcitx5-qt"; rev = version; - sha256 = "sha256-Y7X4pkBSf5FMpf1mdyLvr1QWhqz3yC4iOGXDvvvV9Yw="; + sha256 = "sha256-S7hbcAyoS+gagqoL+C3YgcyjODnE+ZvHEFIoAqAmOxo="; }; preConfigure = '' From 22952268ff8ff9c8c26f1d29943b4971013de136 Mon Sep 17 00:00:00 2001 From: Vonfry Date: Mon, 6 Dec 2021 08:46:55 +0800 Subject: [PATCH 051/278] fcitx5-gtk: 5.0.7 -> 5.0.10 --- pkgs/tools/inputmethods/fcitx5/fcitx5-gtk.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/tools/inputmethods/fcitx5/fcitx5-gtk.nix b/pkgs/tools/inputmethods/fcitx5/fcitx5-gtk.nix index 723624e96abc..43224553753d 100644 --- a/pkgs/tools/inputmethods/fcitx5/fcitx5-gtk.nix +++ b/pkgs/tools/inputmethods/fcitx5/fcitx5-gtk.nix @@ -26,13 +26,13 @@ stdenv.mkDerivation rec { pname = "fcitx5-gtk"; - version = "5.0.7"; + version = "5.0.10"; src = fetchFromGitHub { owner = "fcitx"; repo = pname; rev = version; - sha256 = "0vcikqrxv1xxcdaiz3axgm7rpab4w8aciw838sbpa9l20dp8cnyq"; + sha256 = "sha256-QR2ZHP6dP7XcOCJw2BE1ak+mnRL0njV2T1+iBeMA+do="; }; cmakeFlags = [ From 5690cf2e77d17efc5c53a690aa5351d9e9608a49 Mon Sep 17 00:00:00 2001 From: Vonfry Date: Mon, 6 Dec 2021 08:46:40 +0800 Subject: [PATCH 052/278] fcitx5-configtool: 5.0.5 -> 5.0.9 --- pkgs/tools/inputmethods/fcitx5/fcitx5-configtool.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/tools/inputmethods/fcitx5/fcitx5-configtool.nix b/pkgs/tools/inputmethods/fcitx5/fcitx5-configtool.nix index 584a1b932f48..7a7801b35270 100644 --- a/pkgs/tools/inputmethods/fcitx5/fcitx5-configtool.nix +++ b/pkgs/tools/inputmethods/fcitx5/fcitx5-configtool.nix @@ -19,13 +19,13 @@ mkDerivation rec { pname = "fcitx5-configtool"; - version = "5.0.5"; + version = "5.0.9"; src = fetchFromGitHub { owner = "fcitx"; repo = pname; rev = version; - sha256 = "0w6cgg57ldk02j3fs7mm8pn5inblcjyr20d3xl5qbyawwccjsn2m"; + sha256 = "sha256-QPRaATx6TaysfZrFCR/Itc+4hx3sx7kLbahacQGrccE="; }; cmakeFlags = [ From 0e670d9df7673f974538b949254c285d4d378ae4 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Mon, 6 Dec 2021 06:23:08 +0000 Subject: [PATCH 053/278] buildkit: 0.9.0 -> 0.9.3 --- pkgs/development/tools/buildkit/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/tools/buildkit/default.nix b/pkgs/development/tools/buildkit/default.nix index 12d35c07db3e..b9ae4e4dd887 100644 --- a/pkgs/development/tools/buildkit/default.nix +++ b/pkgs/development/tools/buildkit/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "buildkit"; - version = "0.9.0"; + version = "0.9.3"; src = fetchFromGitHub { owner = "moby"; repo = "buildkit"; rev = "v${version}"; - sha256 = "0i04b5ngvhkan45mx6xjcia0dsx0dc6w8bwy90yg3qnz7yzidm2d"; + sha256 = "sha256-xjuHMjJjA4sx2Hrr6tPpvKtSmhGZ3AZka733DLxmYfk="; }; vendorSha256 = null; From 66c60d196bd480f2a5a659e1b2e029c1b301073e Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Mon, 6 Dec 2021 08:01:30 +0000 Subject: [PATCH 054/278] apprise: 0.9.5.1 -> 0.9.6 --- pkgs/development/python-modules/apprise/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/python-modules/apprise/default.nix b/pkgs/development/python-modules/apprise/default.nix index fbcd7addb2a5..18b829249198 100644 --- a/pkgs/development/python-modules/apprise/default.nix +++ b/pkgs/development/python-modules/apprise/default.nix @@ -5,11 +5,11 @@ buildPythonPackage rec { pname = "apprise"; - version = "0.9.5.1"; + version = "0.9.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-vwkHA66xK4LGhdazZ0o93+cSpGwgiTCMm8IC8D4G1Y0="; + sha256 = "sha256-Fe0GIIGXydKP2DzWnnJ7SCgIeaTGEa/Wta6l0N7zl/g="; }; nativeBuildInputs = [ Babel installShellFiles ]; From c760b5282e8b65a185be258ca592feae40616280 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Mon, 6 Dec 2021 08:06:58 +0000 Subject: [PATCH 055/278] viddy: 0.3.1 -> 0.3.4 --- pkgs/tools/misc/viddy/default.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/tools/misc/viddy/default.nix b/pkgs/tools/misc/viddy/default.nix index 1b9158df1ae3..4b65a63431bd 100644 --- a/pkgs/tools/misc/viddy/default.nix +++ b/pkgs/tools/misc/viddy/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "viddy"; - version = "0.3.1"; + version = "0.3.4"; src = fetchFromGitHub { owner = "sachaos"; repo = pname; rev = "v${version}"; - sha256 = "18ms4kfv332863vd8b7mmrz39y4b8gvhi6lx9x5385jfzd19w5wx"; + sha256 = "sha256-V/x969wi5u5ND9QgJfc4vtI2t1G1ETlATzeqnpHMncc="; }; - vendorSha256 = "0789wq4d9cynyadvlwahs4586gc3p78gdpv5wf733lpv1h5rjbv3"; + vendorSha256 = "sha256-iSgFDTNeRPpCMxNqj2LhYV+6/eskGa58e+rT0Nhg+pE="; ldflags = [ "-s" From b24f58671c1f50ad60e9025b6de9ec67e66eebaf Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Mon, 6 Dec 2021 08:38:14 +0000 Subject: [PATCH 056/278] chezmoi: 2.9.0 -> 2.9.2 --- pkgs/tools/misc/chezmoi/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/tools/misc/chezmoi/default.nix b/pkgs/tools/misc/chezmoi/default.nix index debbe6c0a53b..16a251c9cc65 100644 --- a/pkgs/tools/misc/chezmoi/default.nix +++ b/pkgs/tools/misc/chezmoi/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "chezmoi"; - version = "2.9.0"; + version = "2.9.2"; src = fetchFromGitHub { owner = "twpayne"; repo = "chezmoi"; rev = "v${version}"; - sha256 = "sha256-jeg9XI2enNyZvv2D4URWluCaT+oD8QbHItx2etrGBpQ="; + sha256 = "sha256-tGmyn6RCr+1JiSAaoSDzk9rG2+y8G2Eot3srXEJ0Re0="; }; vendorSha256 = "sha256-jaEaVfPlYbmQ998KwZm8PUfbNlPEIr1lX5fx90jcqV4="; From b16aa54b4496c264d3eb7263a50e81172ecfb1e1 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Mon, 6 Dec 2021 08:49:07 +0000 Subject: [PATCH 057/278] circleci-cli: 0.1.16122 -> 0.1.16535 --- pkgs/development/tools/misc/circleci-cli/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/tools/misc/circleci-cli/default.nix b/pkgs/development/tools/misc/circleci-cli/default.nix index 70d68e92b4e9..77fe16c442d3 100644 --- a/pkgs/development/tools/misc/circleci-cli/default.nix +++ b/pkgs/development/tools/misc/circleci-cli/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "circleci-cli"; - version = "0.1.16122"; + version = "0.1.16535"; src = fetchFromGitHub { owner = "CircleCI-Public"; repo = pname; rev = "v${version}"; - sha256 = "sha256-zIBEKGp9icdBLwZBMf30d8JxmJwwWrO/arh8ZvMHTSI="; + sha256 = "sha256-IsFvUWNuQsECh47M6wDpuyDYXrKKaZp2SSmEGFryzM0="; }; vendorSha256 = "sha256-efrjHwHobML/t2lDSFx+UyAOca9dHjZHcAxkFzJqWEo="; From d70281593fbc1ce61d6a5e2f1bc712b76ea1f992 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Mon, 6 Dec 2021 08:53:36 +0000 Subject: [PATCH 058/278] clair: 4.3.2 -> 4.3.5 --- pkgs/tools/admin/clair/default.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/tools/admin/clair/default.nix b/pkgs/tools/admin/clair/default.nix index 752644c40cb4..bfeb636cb16e 100644 --- a/pkgs/tools/admin/clair/default.nix +++ b/pkgs/tools/admin/clair/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "clair"; - version = "4.3.2"; + version = "4.3.5"; src = fetchFromGitHub { owner = "quay"; repo = pname; rev = "v${version}"; - sha256 = "sha256-E5hMjGsub3HWzvQYLUnSHmSfiW1uaZCyJndyasrjzw8="; + sha256 = "sha256-XV1lSEg6ksa5Y1jPKpVw3l+3pWkf6iBrJ+TBqVoj60k="; }; - vendorSha256 = "sha256-J0AOgget9SpV+tKhzHINfsc7Vbxc2zVWIeFHruPc2BE="; + vendorSha256 = "sha256-U5uPTd9RHJnt3It7iluu73ihuDiIl3kCy/1f2bRqhBY="; doCheck = false; From 50d94b4d44c4b0f5c29b68557be935a12828701b Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Mon, 6 Dec 2021 10:49:26 +0000 Subject: [PATCH 059/278] conftest: 0.28.2 -> 0.28.3 --- pkgs/development/tools/conftest/default.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/development/tools/conftest/default.nix b/pkgs/development/tools/conftest/default.nix index 85b34e483468..ae5e97cd574b 100644 --- a/pkgs/development/tools/conftest/default.nix +++ b/pkgs/development/tools/conftest/default.nix @@ -2,15 +2,15 @@ buildGoModule rec { pname = "conftest"; - version = "0.28.2"; + version = "0.28.3"; src = fetchFromGitHub { owner = "open-policy-agent"; repo = "conftest"; rev = "v${version}"; - sha256 = "sha256-lmmk6veBDI51UA/wnFB7Q3DTxZ9J/1qp0OoNgmBrR1Y="; + sha256 = "sha256-qUbrd80As5BrP67bk8aXWAq85UKL1de5sJlPQtBuxn4="; }; - vendorSha256 = "sha256-NALyUjFL6OqgCke1QiUxbSNLAoaIMB2zeIWWEfcnCjs="; + vendorSha256 = "sha256-cEa2IB65CWsWXZnVRZmOOvUyOhybHBssQGt/pP7YPcg="; ldflags = [ "-s" From 2b260cc795478df117bc68e8c7686a913ba90f94 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Mon, 6 Dec 2021 11:55:43 +0000 Subject: [PATCH 060/278] tut: 0.0.41 -> 0.0.42 --- pkgs/applications/misc/tut/default.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/applications/misc/tut/default.nix b/pkgs/applications/misc/tut/default.nix index 0a9c2d38fa4b..2c4cc1a11c09 100644 --- a/pkgs/applications/misc/tut/default.nix +++ b/pkgs/applications/misc/tut/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "tut"; - version = "0.0.41"; + version = "0.0.42"; src = fetchFromGitHub { owner = "RasmusLindroth"; repo = pname; rev = version; - sha256 = "sha256-13d3EE/rswcHRALUfL46qpKYJUDwGiou5kUz+nCC8VQ="; + sha256 = "sha256-zWhG9lzerzDqqFN8IG5JSv3voLzvtp/gg6jBisbodMc="; }; - vendorSha256 = "sha256-RtvzQvZIFdLo24U9IWcoL9qnf4/q/+1UCrb7dcRKEIE="; + vendorSha256 = "sha256-kMGEAN/I2XsIc6zCDbhbbstYlyjDpXQsOPUzjaJqJBk="; meta = with lib; { description = "A TUI for Mastodon with vim inspired keys"; From acc8073467b15c37848c184e034b3afb372765dc Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Mon, 6 Dec 2021 11:57:14 +0000 Subject: [PATCH 061/278] cpp-utilities: 5.11.2 -> 5.11.3 --- pkgs/development/libraries/cpp-utilities/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/libraries/cpp-utilities/default.nix b/pkgs/development/libraries/cpp-utilities/default.nix index 6a0087d4bfbc..3f5b7b3db91d 100644 --- a/pkgs/development/libraries/cpp-utilities/default.nix +++ b/pkgs/development/libraries/cpp-utilities/default.nix @@ -7,13 +7,13 @@ stdenv.mkDerivation rec { pname = "cpp-utilities"; - version = "5.11.2"; + version = "5.11.3"; src = fetchFromGitHub { owner = "Martchus"; repo = pname; rev = "v${version}"; - sha256 = "sha256-my4799a9XFXWl9Xyq6gRfw4YTOCEWJgTvRKz0mVqrkQ="; + sha256 = "sha256-a/fuzZ8crmyO87QzIKuYPk0LC3EvvHZrWO17LtWu77I="; }; nativeBuildInputs = [ cmake ]; From 1b9e74a8ded639e1d4da83a2c8656458cb048cd9 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Mon, 6 Dec 2021 12:03:03 +0000 Subject: [PATCH 062/278] nodejs-16_x: 16.13.0 -> 16.13.1 --- pkgs/development/web/nodejs/v16.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/web/nodejs/v16.nix b/pkgs/development/web/nodejs/v16.nix index a1b0f1ea8c42..6eff31e3b02a 100644 --- a/pkgs/development/web/nodejs/v16.nix +++ b/pkgs/development/web/nodejs/v16.nix @@ -8,7 +8,7 @@ let in buildNodejs { inherit enableNpm; - version = "16.13.0"; - sha256 = "1k6bgs83s5iaawi63dcc826g23lfqr13phwbbzwx0pllqcyln49j"; + version = "16.13.1"; + sha256 = "1bb3rjb2xxwn6f4grjsa7m1pycp0ad7y6vz7v2d7kbsysx7h08sc"; patches = [ ./disable-darwin-v8-system-instrumentation.patch ]; } From 7cee057ae5a00fa61a5e3785ebeb7a88b7cd5940 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Mon, 6 Dec 2021 12:45:10 +0000 Subject: [PATCH 063/278] traefik: 2.5.3 -> 2.5.4 --- pkgs/servers/traefik/default.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/servers/traefik/default.nix b/pkgs/servers/traefik/default.nix index fab7806bac53..a707a4b98714 100644 --- a/pkgs/servers/traefik/default.nix +++ b/pkgs/servers/traefik/default.nix @@ -2,15 +2,15 @@ buildGoModule rec { pname = "traefik"; - version = "2.5.3"; + version = "2.5.4"; src = fetchzip { url = "https://github.com/traefik/traefik/releases/download/v${version}/traefik-v${version}.src.tar.gz"; - sha256 = "sha256-Bq7wuc127aC/GO5wsgNkwvZsRbxFnZk2fzTWTygl6Sw="; + sha256 = "sha256-OMzLRgpTUIosmlAdMiNplOx/Oj28gcqamsOPJdoFkN0="; stripRoot = false; }; - vendorSha256 = "sha256-NyIPT2NmJFB1wjNNteAEpTPYSYQZtEWJBOvG0YtxUGc="; + vendorSha256 = "sha256-BSempfKgRCj87XM8qPNEUs+sMILVS6bWwWgf7wWQviI="; doCheck = false; From baaaf41996f633de43213ab7affc494bd8d2c56c Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Mon, 6 Dec 2021 12:54:57 +0000 Subject: [PATCH 064/278] datadog-agent: 7.31.0 -> 7.32.1 --- pkgs/tools/networking/dd-agent/datadog-agent.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/tools/networking/dd-agent/datadog-agent.nix b/pkgs/tools/networking/dd-agent/datadog-agent.nix index e050b68ca2d5..3edc085b931d 100644 --- a/pkgs/tools/networking/dd-agent/datadog-agent.nix +++ b/pkgs/tools/networking/dd-agent/datadog-agent.nix @@ -10,15 +10,15 @@ let in buildGoModule rec { pname = "datadog-agent"; - version = "7.31.0"; + version = "7.32.1"; src = fetchFromGitHub { inherit owner repo; rev = version; - sha256 = "sha256-APwR3/bvCHNnJWxRPSLLe4lHYv39wfw3WhGDEkxAku8="; + sha256 = "sha256-21xrnPP5uoGzVCBplNxzKUxFTjopDTjdVQqyvIEzIuo="; }; - vendorSha256 = "sha256-CNQJvnNnB29duALEXPguEJsoRHdieAiPFbwXa89jxUk="; + vendorSha256 = "sha256-j3A8Gqw3Erf6suK/TH9Ml2zb7tYDGNFqil5wSZRs79o="; subPackages = [ "cmd/agent" From 2a220d95b40eb4e2e2d60ea033fa2cdf30bbafbb Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Mon, 6 Dec 2021 13:15:18 +0000 Subject: [PATCH 065/278] unit: 1.26.0 -> 1.26.1 --- pkgs/servers/http/unit/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/servers/http/unit/default.nix b/pkgs/servers/http/unit/default.nix index f2e3af0c6790..e6fcaaca4bcf 100644 --- a/pkgs/servers/http/unit/default.nix +++ b/pkgs/servers/http/unit/default.nix @@ -29,14 +29,14 @@ let php80-unit = php80.override phpConfig; in stdenv.mkDerivation rec { - version = "1.26.0"; + version = "1.26.1"; pname = "unit"; src = fetchFromGitHub { owner = "nginx"; repo = pname; rev = version; - sha256 = "sha256-nh49Uz9iM5UbAfERUVGpR7ExuwJBgYC/CQk/QwjexqY="; + sha256 = "sha256-rTT7EJSHepGOwNXVqlOBOhZayZQXyNo3B2Oa1oLf2FI="; }; nativeBuildInputs = [ which ]; From 9f23f5bc88dedd293e49efc007ac16a501a4e914 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Mon, 6 Dec 2021 13:17:10 +0000 Subject: [PATCH 066/278] nwg-panel: 0.4.3 -> 0.5.0 --- pkgs/applications/misc/nwg-panel/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/applications/misc/nwg-panel/default.nix b/pkgs/applications/misc/nwg-panel/default.nix index 24697611622a..cb95b78ce39f 100644 --- a/pkgs/applications/misc/nwg-panel/default.nix +++ b/pkgs/applications/misc/nwg-panel/default.nix @@ -13,13 +13,13 @@ python3Packages.buildPythonApplication rec { pname = "nwg-panel"; - version = "0.4.3"; + version = "0.5.0"; src = fetchFromGitHub { owner = "nwg-piotr"; repo = "nwg-panel"; rev = "v${version}"; - sha256 = "1ihwrs0h2kcw0jw9zq43a9m1qaxllqmbvz0wyv73sgh9zsid5733"; + sha256 = "16qpl8dyvll6zy45q8nrg4n6g6n72pj9425gdxv2wfq96mcxfmbl"; }; # No tests From 700a66f5ac656881cc9cfe86478e9946170e34c9 Mon Sep 17 00:00:00 2001 From: figsoda Date: Mon, 6 Dec 2021 08:19:40 -0500 Subject: [PATCH 067/278] cargo-deny: 0.10.2 -> 0.11.0 --- .../tools/rust/cargo-deny/default.nix | 15 ++++++---- .../rust/cargo-deny/zstd-pkg-config.patch | 29 +++++++++++++++++++ 2 files changed, 39 insertions(+), 5 deletions(-) create mode 100644 pkgs/development/tools/rust/cargo-deny/zstd-pkg-config.patch diff --git a/pkgs/development/tools/rust/cargo-deny/default.nix b/pkgs/development/tools/rust/cargo-deny/default.nix index 54cf8c4de57f..b895ff703e48 100644 --- a/pkgs/development/tools/rust/cargo-deny/default.nix +++ b/pkgs/development/tools/rust/cargo-deny/default.nix @@ -3,6 +3,7 @@ , fetchFromGitHub , pkg-config , openssl +, zstd , stdenv , curl , Security @@ -10,26 +11,30 @@ rustPlatform.buildRustPackage rec { pname = "cargo-deny"; - version = "0.10.2"; + version = "0.11.0"; src = fetchFromGitHub { owner = "EmbarkStudios"; repo = pname; rev = version; - sha256 = "sha256-QgaiyGBz23x3HkUv8fMNgEQyBvtPoZPbRCCVOQ5cJd0="; + sha256 = "sha256-LYXwdOopQkgq7i4l8dqQFkNLB3r+CVRor4BVeoj0DPs="; }; - cargoSha256 = "sha256-Q334bsDFs0AT8ZZDcbT8PyYUK9nF3GIeVjlGkcbObAo="; + # enable pkg-config feature of zstd + cargoPatches = [ ./zstd-pkg-config.patch ]; - doCheck = false; + cargoSha256 = "sha256-SdbDWw4GOvCTKN7vBjhLU5rhdVIpyO+AWaFbo06HXfU="; nativeBuildInputs = [ pkg-config ]; - buildInputs = [ openssl ] + buildInputs = [ openssl zstd ] ++ lib.optionals stdenv.isDarwin [ curl Security ]; buildNoDefaultFeatures = true; + # tests require internet access + doCheck = false; + meta = with lib; { description = "Cargo plugin to generate list of all licenses for a crate"; homepage = "https://github.com/EmbarkStudios/cargo-deny"; diff --git a/pkgs/development/tools/rust/cargo-deny/zstd-pkg-config.patch b/pkgs/development/tools/rust/cargo-deny/zstd-pkg-config.patch new file mode 100644 index 000000000000..346d49e26d04 --- /dev/null +++ b/pkgs/development/tools/rust/cargo-deny/zstd-pkg-config.patch @@ -0,0 +1,29 @@ +--- a/Cargo.lock ++++ b/Cargo.lock +@@ -242,6 +242,7 @@ dependencies = [ + "toml_edit", + "twox-hash", + "url", ++ "zstd", + ] + + [[package]] +@@ -1904,4 +1905,5 @@ checksum = "2141bed8922b427761470e6bbfeff255da94fa20b0bbeab0d9297fcaf71e3aa7" + dependencies = [ + "cc", + "libc", ++ "pkg-config", + ] +diff --git a/Cargo.toml b/Cargo.toml +index 8f24673..b59c350 100644 +--- a/Cargo.toml ++++ b/Cargo.toml +@@ -92,6 +92,8 @@ twox-hash = { version = "1.5", default-features = false } + # Url parsing/manipulation + url = "2.1" + ++zstd = { version = "*", features = ["pkg-config"] } ++ + [dev-dependencies] + # Avoid loading license check many times + lazy_static = "1.4.0" From 125bb7dac1fcf9829ff93a33ed19665a72872ecd Mon Sep 17 00:00:00 2001 From: talyz Date: Mon, 6 Dec 2021 14:21:39 +0100 Subject: [PATCH 068/278] discourse: Don't patch the public path Instead of patching the path to /public in Discourse's sources, make the nginx configuration refer to the symlink in the discourse package which points to the real path. When there is a mismatch between the path nginx serves and the path Discourse thinks it serves, we can run into issues like files not being served - at least when sendfile requests from the ruby app are processed by nginx. The issue I ran into most recently is that backup downloads don't work. Since Discourse refers to the public directory relative to the Rails root in many places, it's much easier to just sync this path to the nginx configuration than trying to patch all occurrences in the sources. This should hopefully mean less potential for breakage in future Discourse releases, too. --- nixos/modules/services/web-apps/discourse.nix | 8 ++++---- pkgs/servers/web-apps/discourse/default.nix | 5 ----- .../web-apps/discourse/public_dir_path.patch | 13 ------------- 3 files changed, 4 insertions(+), 22 deletions(-) delete mode 100644 pkgs/servers/web-apps/discourse/public_dir_path.patch diff --git a/nixos/modules/services/web-apps/discourse.nix b/nixos/modules/services/web-apps/discourse.nix index 1c7ffd59a596..18b61200aa1b 100644 --- a/nixos/modules/services/web-apps/discourse.nix +++ b/nixos/modules/services/web-apps/discourse.nix @@ -841,7 +841,7 @@ in inherit (cfg) sslCertificate sslCertificateKey enableACME; forceSSL = lib.mkDefault tlsEnabled; - root = "/run/discourse/public"; + root = "${cfg.package}/share/discourse/public"; locations = let @@ -893,7 +893,7 @@ in "~ ^/uploads/" = proxy { extraConfig = cache_1y + '' proxy_set_header X-Sendfile-Type X-Accel-Redirect; - proxy_set_header X-Accel-Mapping /run/discourse/public/=/downloads/; + proxy_set_header X-Accel-Mapping ${cfg.package}/share/discourse/public/=/downloads/; # custom CSS location ~ /stylesheet-cache/ { @@ -915,7 +915,7 @@ in "~ ^/admin/backups/" = proxy { extraConfig = '' proxy_set_header X-Sendfile-Type X-Accel-Redirect; - proxy_set_header X-Accel-Mapping /run/discourse/public/=/downloads/; + proxy_set_header X-Accel-Mapping ${cfg.package}/share/discourse/public/=/downloads/; ''; }; "~ ^/(svg-sprite/|letter_avatar/|letter_avatar_proxy/|user_avatar|highlight-js|stylesheets|theme-javascripts|favicon/proxied|service-worker)" = proxy { @@ -942,7 +942,7 @@ in }; "/downloads/".extraConfig = '' internal; - alias /run/discourse/public/; + alias ${cfg.package}/share/discourse/public/; ''; }; }; diff --git a/pkgs/servers/web-apps/discourse/default.nix b/pkgs/servers/web-apps/discourse/default.nix index 62e9be80bcd9..6134b307c24d 100644 --- a/pkgs/servers/web-apps/discourse/default.nix +++ b/pkgs/servers/web-apps/discourse/default.nix @@ -264,11 +264,6 @@ let # Make sure the notification email setting applies ./notification_email.patch - - # Change the path to the public directory reported by Discourse - # to its real path instead of the symlink in the store, since - # the store path won't be matched by any nginx rules - ./public_dir_path.patch ]; postPatch = '' diff --git a/pkgs/servers/web-apps/discourse/public_dir_path.patch b/pkgs/servers/web-apps/discourse/public_dir_path.patch deleted file mode 100644 index 0c6579736e22..000000000000 --- a/pkgs/servers/web-apps/discourse/public_dir_path.patch +++ /dev/null @@ -1,13 +0,0 @@ -diff --git a/lib/file_store/local_store.rb b/lib/file_store/local_store.rb -index 25649532c0..614e062dc1 100644 ---- a/lib/file_store/local_store.rb -+++ b/lib/file_store/local_store.rb -@@ -88,7 +88,7 @@ module FileStore - end - - def public_dir -- File.join(Rails.root, "public") -+ "/run/discourse/public" - end - - def tombstone_dir From 01eb1394239969f9bb757ee4703195ce163ea598 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Mon, 6 Dec 2021 13:23:17 +0000 Subject: [PATCH 069/278] octant: 0.24.0 -> 0.25.0 --- .../applications/networking/cluster/octant/default.nix | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/pkgs/applications/networking/cluster/octant/default.nix b/pkgs/applications/networking/cluster/octant/default.nix index 257c37ff328d..7c97b9eaedb2 100644 --- a/pkgs/applications/networking/cluster/octant/default.nix +++ b/pkgs/applications/networking/cluster/octant/default.nix @@ -2,7 +2,7 @@ stdenv.mkDerivation rec { pname = "octant"; - version = "0.24.0"; + version = "0.25.0"; src = let @@ -19,10 +19,10 @@ stdenv.mkDerivation rec { }; in fetchsrc version { - x86_64-linux = "sha256-fvGVcp6SpHY0UuWurRuypDXbWEs565bK1Peg0Q4Y0m8="; - aarch64-linux = "sha256-7h8l4Pm34UCZ5NhD1scM1c5sM4ePGLDRGAQBfI5vSHI="; - x86_64-darwin = "sha256-2S+D5Gg98GEL5L6bC8ZUSEJXFs74ZaZlNkYHYJYZvqw="; - aarch64-darwin = "sha256-rEhMX+v2sjsmc1p22uscjIyhcnpv2fWjgEnU+lUq9RE="; + x86_64-linux = "sha256-woBmYDOOh3AQH0RZJtMCrOfjFBrpMPzv22cVZ2/xHZo="; + aarch64-linux = "sha256-3YUUdOZULjJZqVJP0aO/d1WulXlpwf012NYJ6Mc2qp8="; + x86_64-darwin = "sha256-9lbMyEid4I1fRLkLwGbmrB2OkycnGBPUU5wEdVZoTLo="; + aarch64-darwin = "sha256-Q0ZkQX9FpzEc6WC3mRoYfg9oW3fvLB1/Ksa64TDlSgo="; }; dontConfigure = true; From e7c61ddb0f5d7404cb78857a3ca9fa4b603e32a5 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Mon, 6 Dec 2021 13:25:59 +0000 Subject: [PATCH 070/278] tixati: 2.85 -> 2.86 --- pkgs/applications/networking/p2p/tixati/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/applications/networking/p2p/tixati/default.nix b/pkgs/applications/networking/p2p/tixati/default.nix index 01e119dafc18..12528421fa86 100644 --- a/pkgs/applications/networking/p2p/tixati/default.nix +++ b/pkgs/applications/networking/p2p/tixati/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "tixati"; - version = "2.85"; + version = "2.86"; src = fetchurl { url = "https://download2.tixati.com/download/tixati-${version}-1.x86_64.manualinstall.tar.gz"; - sha256 = "sha256-grmJ52x2NcsgXw5BWrEGF9+7TYS/45HgHUXuZB+hVK4="; + sha256 = "sha256-E5jZnjIdYRzkZ9hN7gKzIIjC0k2nN47yDptsMYrsvIA="; }; installPhase = '' From 363c5a0759006dd17cd69667745e97cbba15984d Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Mon, 6 Dec 2021 14:01:52 +0000 Subject: [PATCH 071/278] do-agent: 3.11.0 -> 3.12.0 --- pkgs/servers/monitoring/do-agent/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/servers/monitoring/do-agent/default.nix b/pkgs/servers/monitoring/do-agent/default.nix index b3da1a56049b..05e7654bf549 100644 --- a/pkgs/servers/monitoring/do-agent/default.nix +++ b/pkgs/servers/monitoring/do-agent/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "do-agent"; - version = "3.11.0"; + version = "3.12.0"; src = fetchFromGitHub { owner = "digitalocean"; repo = "do-agent"; rev = version; - sha256 = "sha256-Up7HBG6h24XIjBRvQYZpuB5lWXYTipQql9loykwwd1k="; + sha256 = "sha256-9xbtZeufDhci3yTsxAcPcYtnEhOg9k/K8a44SXXiAY0="; }; ldflags = [ From c14ea0f1809495d63576ad5307881cd4fdfe675f Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Mon, 6 Dec 2021 14:27:27 +0000 Subject: [PATCH 072/278] doctl: 1.65.0 -> 1.67.0 --- pkgs/development/tools/doctl/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/tools/doctl/default.nix b/pkgs/development/tools/doctl/default.nix index 2f91257801a9..6405c042a220 100644 --- a/pkgs/development/tools/doctl/default.nix +++ b/pkgs/development/tools/doctl/default.nix @@ -2,7 +2,7 @@ buildGoModule rec { pname = "doctl"; - version = "1.65.0"; + version = "1.67.0"; vendorSha256 = null; @@ -31,7 +31,7 @@ buildGoModule rec { owner = "digitalocean"; repo = "doctl"; rev = "v${version}"; - sha256 = "sha256-Fd3Zp4mXrYAdINJu/kbBCputAkHrG3MVpTOPitcd0hk="; + sha256 = "sha256-xtOgc52mn3e/Kiz6GVK8RLQkoJW9Kpv0GvGXXgrCdpc="; }; meta = with lib; { From 31701970986d5d6f3f61332ac5e14a0b3fc3381e Mon Sep 17 00:00:00 2001 From: figsoda Date: Mon, 6 Dec 2021 08:39:08 -0500 Subject: [PATCH 073/278] cargo-about: 0.4.2 -> 0.4.3, mark broken on darwin --- .../cargo-about/default.nix | 16 ++++++-- .../cargo-about/zstd-pkg-config.patch | 39 +++++++++++++++++++ 2 files changed, 51 insertions(+), 4 deletions(-) create mode 100644 pkgs/tools/package-management/cargo-about/zstd-pkg-config.patch diff --git a/pkgs/tools/package-management/cargo-about/default.nix b/pkgs/tools/package-management/cargo-about/default.nix index ac9249b3a9be..8e8cc710b5d8 100644 --- a/pkgs/tools/package-management/cargo-about/default.nix +++ b/pkgs/tools/package-management/cargo-about/default.nix @@ -1,17 +1,24 @@ -{ lib, rustPlatform, fetchFromGitHub }: +{ lib, rustPlatform, fetchFromGitHub, pkg-config, zstd, stdenv }: rustPlatform.buildRustPackage rec { pname = "cargo-about"; - version = "0.4.2"; + version = "0.4.3"; src = fetchFromGitHub { owner = "EmbarkStudios"; repo = "cargo-about"; rev = version; - sha256 = "sha256-QLPqvlMwCdMfUGCVibCGQdI7UkHV1WBfpBi2Kwi3b1Q="; + sha256 = "sha256-nNMpCv7pokWK+rCV/jEvTpJNwTtZO5t2+etMRg3XJiQ="; }; - cargoSha256 = "sha256-x9hx9wJlcrGo1zuugPYY4G4Os5x8tIOICKnKq8TuevI="; + # enable pkg-config feature of zstd + cargoPatches = [ ./zstd-pkg-config.patch ]; + + cargoSha256 = "sha256-LC4vY/jyIPGY2UpB4LOKCCR/gv8EUfB4nH8h0O9c6iw="; + + nativeBuildInputs = [ pkg-config ]; + + buildInputs = [ zstd ]; meta = with lib; { description = "Cargo plugin to generate list of all licenses for a crate"; @@ -19,5 +26,6 @@ rustPlatform.buildRustPackage rec { changelog = "https://github.com/EmbarkStudios/cargo-about/blob/${version}/CHANGELOG.md"; license = with licenses; [ mit /* or */ asl20 ]; maintainers = with maintainers; [ evanjs figsoda ]; + broken = stdenv.isDarwin; }; } diff --git a/pkgs/tools/package-management/cargo-about/zstd-pkg-config.patch b/pkgs/tools/package-management/cargo-about/zstd-pkg-config.patch new file mode 100644 index 000000000000..e084538ca924 --- /dev/null +++ b/pkgs/tools/package-management/cargo-about/zstd-pkg-config.patch @@ -0,0 +1,39 @@ +--- a/Cargo.lock ++++ b/Cargo.lock +@@ -183,6 +183,7 @@ dependencies = [ + "toml_edit", + "twox-hash", + "url", ++ "zstd", + ] + + [[package]] +@@ -1039,6 +1040,12 @@ version = "0.1.0" + source = "registry+https://github.com/rust-lang/crates.io-index" + checksum = "8b870d8c151b6f2fb93e84a13146138f05d02ed11c7e7c54f8826aaaf7c9f184" + ++[[package]] ++name = "pkg-config" ++version = "0.3.22" ++source = "registry+https://github.com/rust-lang/crates.io-index" ++checksum = "12295df4f294471248581bc09bef3c38a5e46f1e36d6a37353621a0c6c357e1f" ++ + [[package]] + name = "ppv-lite86" + version = "0.2.15" +@@ -1902,4 +1909,5 @@ checksum = "2141bed8922b427761470e6bbfeff255da94fa20b0bbeab0d9297fcaf71e3aa7" + dependencies = [ + "cc", + "libc", ++ "pkg-config", + ] +diff --git a/Cargo.toml b/Cargo.toml +index bf2a896..35cbf7c 100644 +--- a/Cargo.toml ++++ b/Cargo.toml +@@ -80,3 +80,5 @@ toml_edit = "0.9" + twox-hash = "1.6" + # Url parsing + url = "2.2" ++ ++zstd = { version = "*", features = ["pkg-config"] } From 4670400309f5fb898f4b63e7091d62cc531be46f Mon Sep 17 00:00:00 2001 From: pennae Date: Thu, 18 Nov 2021 20:21:53 +0100 Subject: [PATCH 074/278] nixos/lib/make-options-doc: generate asciidoc/md in derivations use the json file derivation we already have to also generate the asciidoc and md options docs instead of formatting the options in nix. docbook docs are already produced in derivations. the new script produce the exact same output as the old in-nix generation. --- nixos/lib/make-options-doc/default.nix | 74 +++---------------- .../lib/make-options-doc/generateAsciiDoc.py | 37 ++++++++++ .../make-options-doc/generateCommonMark.py | 27 +++++++ 3 files changed, 75 insertions(+), 63 deletions(-) create mode 100644 nixos/lib/make-options-doc/generateAsciiDoc.py create mode 100644 nixos/lib/make-options-doc/generateCommonMark.py diff --git a/nixos/lib/make-options-doc/default.nix b/nixos/lib/make-options-doc/default.nix index e058e70f3888..498a60134ab6 100644 --- a/nixos/lib/make-options-doc/default.nix +++ b/nixos/lib/make-options-doc/default.nix @@ -93,72 +93,20 @@ let optionsNix = builtins.listToAttrs (map (o: { name = o.name; value = removeAttrs o ["name" "visible" "internal"]; }) optionsList); - # TODO: declarations: link to github - singleAsciiDoc = name: value: '' - == ${name} - - ${value.description} - - [discrete] - === details - - Type:: ${value.type} - ${ if lib.hasAttr "default" value - then '' - Default:: - + - ---- - ${builtins.toJSON value.default} - ---- - '' - else "No Default:: {blank}" - } - ${ if value.readOnly - then "Read Only:: {blank}" - else "" - } - ${ if lib.hasAttr "example" value - then '' - Example:: - + - ---- - ${builtins.toJSON value.example} - ---- - '' - else "No Example:: {blank}" - } - ''; - - singleMDDoc = name: value: '' - ## ${lib.escape [ "<" ">" ] name} - ${value.description} - - ${lib.optionalString (value ? type) '' - *_Type_*: - ${value.type} - ''} - - ${lib.optionalString (value ? default) '' - *_Default_* - ``` - ${builtins.toJSON value.default} - ``` - ''} - - ${lib.optionalString (value ? example) '' - *_Example_* - ``` - ${builtins.toJSON value.example} - ``` - ''} - ''; - -in { +in rec { inherit optionsNix; - optionsAsciiDoc = lib.concatStringsSep "\n" (lib.mapAttrsToList singleAsciiDoc optionsNix); + optionsAsciiDoc = pkgs.runCommand "options.adoc" {} '' + ${pkgs.python3Minimal}/bin/python ${./generateAsciiDoc.py} \ + < ${optionsJSON}/share/doc/nixos/options.json \ + > $out + ''; - optionsMDDoc = lib.concatStringsSep "\n" (lib.mapAttrsToList singleMDDoc optionsNix); + optionsCommonMark = pkgs.runCommand "options.md" {} '' + ${pkgs.python3Minimal}/bin/python ${./generateCommonMark.py} \ + < ${optionsJSON}/share/doc/nixos/options.json \ + > $out + ''; optionsJSON = pkgs.runCommand "options.json" { meta.description = "List of NixOS options in JSON format"; diff --git a/nixos/lib/make-options-doc/generateAsciiDoc.py b/nixos/lib/make-options-doc/generateAsciiDoc.py new file mode 100644 index 000000000000..48eadd248c5a --- /dev/null +++ b/nixos/lib/make-options-doc/generateAsciiDoc.py @@ -0,0 +1,37 @@ +import json +import sys + +options = json.load(sys.stdin) +# TODO: declarations: link to github +for (name, value) in options.items(): + print(f'== {name}') + print() + print(value['description']) + print() + print('[discrete]') + print('=== details') + print() + print(f'Type:: {value["type"]}') + if 'default' in value: + print('Default::') + print('+') + print('----') + print(json.dumps(value['default'], ensure_ascii=False, separators=(',', ':'))) + print('----') + print() + else: + print('No Default:: {blank}') + if value['readOnly']: + print('Read Only:: {blank}') + else: + print() + if 'example' in value: + print('Example::') + print('+') + print('----') + print(json.dumps(value['example'], ensure_ascii=False, separators=(',', ':'))) + print('----') + print() + else: + print('No Example:: {blank}') + print() diff --git a/nixos/lib/make-options-doc/generateCommonMark.py b/nixos/lib/make-options-doc/generateCommonMark.py new file mode 100644 index 000000000000..404e53b0df9c --- /dev/null +++ b/nixos/lib/make-options-doc/generateCommonMark.py @@ -0,0 +1,27 @@ +import json +import sys + +options = json.load(sys.stdin) +for (name, value) in options.items(): + print('##', name.replace('<', '\\<').replace('>', '\\>')) + print(value['description']) + print() + if 'type' in value: + print('*_Type_*:') + print(value['type']) + print() + print() + if 'default' in value: + print('*_Default_*') + print('```') + print(json.dumps(value['default'], ensure_ascii=False, separators=(',', ':'))) + print('```') + print() + print() + if 'example' in value: + print('*_Example_*') + print('```') + print(json.dumps(value['example'], ensure_ascii=False, separators=(',', ':'))) + print('```') + print() + print() From c533b018631d68da543f20ff52775c562fa8b13d Mon Sep 17 00:00:00 2001 From: pennae Date: Thu, 18 Nov 2021 20:26:12 +0100 Subject: [PATCH 075/278] nixos/doc/manual: remove non-matching optionsXML inherit --- nixos/doc/manual/default.nix | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nixos/doc/manual/default.nix b/nixos/doc/manual/default.nix index 151743d9fb58..31b6da01c6bd 100644 --- a/nixos/doc/manual/default.nix +++ b/nixos/doc/manual/default.nix @@ -161,7 +161,7 @@ let in rec { inherit generatedSources; - inherit (optionsDoc) optionsJSON optionsXML optionsDocBook; + inherit (optionsDoc) optionsJSON optionsDocBook; # Generate the NixOS manual. manualHTML = runCommand "nixos-manual-html" From 9b97a2ea883a53f89a2c22d93edb7a218c194330 Mon Sep 17 00:00:00 2001 From: pennae Date: Thu, 18 Nov 2021 20:28:52 +0100 Subject: [PATCH 076/278] nix/lib/make-options-doc: remove nix-level sorting there are no remaining users of sorted option lists except the docbook build, which sorts its input separately. --- nixos/lib/make-options-doc/default.nix | 18 ++---------------- nixos/lib/make-options-doc/sortXML.py | 1 - 2 files changed, 2 insertions(+), 17 deletions(-) diff --git a/nixos/lib/make-options-doc/default.nix b/nixos/lib/make-options-doc/default.nix index 498a60134ab6..4e3f62544eb3 100644 --- a/nixos/lib/make-options-doc/default.nix +++ b/nixos/lib/make-options-doc/default.nix @@ -31,7 +31,7 @@ let else if lib.isFunction x then "" else x; - optionsListDesc = lib.flip map optionsListVisible + optionsList = lib.flip map optionsListVisible (opt: transformOptions opt // lib.optionalAttrs (opt ? example) { example = substFunction opt.example; } // lib.optionalAttrs (opt ? default) { default = substFunction opt.default; } @@ -69,27 +69,13 @@ let + ""; in "${lib.concatStringsSep "\n" (map (p: describe (unpack p)) packages)}"; - # Custom "less" that pushes up all the things ending in ".enable*" - # and ".package*" - optionLess = a: b: - let - ise = lib.hasPrefix "enable"; - isp = lib.hasPrefix "package"; - cmp = lib.splitByAndCompare ise lib.compare - (lib.splitByAndCompare isp lib.compare lib.compare); - in lib.compareLists cmp a.loc b.loc < 0; - # Remove invisible and internal options. optionsListVisible = lib.filter (opt: opt.visible && !opt.internal) (lib.optionAttrSetToDocList options); - # Customly sort option list for the man page. - # Always ensure that the sort order matches sortXML.py! - optionsList = lib.sort optionLess optionsListDesc; - # Convert the list of options into an XML file. # This file is *not* sorted sorted to save on eval time, since the docbook XML # and the manpage depend on it and thus we evaluate this on every system rebuild. - optionsXML = builtins.toFile "options.xml" (builtins.toXML optionsListDesc); + optionsXML = builtins.toFile "options.xml" (builtins.toXML optionsList); optionsNix = builtins.listToAttrs (map (o: { name = o.name; value = removeAttrs o ["name" "visible" "internal"]; }) optionsList); diff --git a/nixos/lib/make-options-doc/sortXML.py b/nixos/lib/make-options-doc/sortXML.py index 717820788c94..e63ff3538b3f 100644 --- a/nixos/lib/make-options-doc/sortXML.py +++ b/nixos/lib/make-options-doc/sortXML.py @@ -19,7 +19,6 @@ def sortKey(opt): for p in opt.findall('attr[@name="loc"]/list/string') ] -# always ensure that the sort order matches the order used in the nix expression! options.sort(key=sortKey) doc = ET.Element("expr") From 027f7e1b7f4552c9c9f0ff909a6863d5bf347a72 Mon Sep 17 00:00:00 2001 From: pennae Date: Thu, 18 Nov 2021 23:00:03 +0100 Subject: [PATCH 077/278] nixos/lib/make-options-doc: generate options.xml from options.json to do this we must replace derivations with attrsets in make-options-doc, since xml can represent derivations differently from attrset but json cannot. this also given asciidoc and mddoc the ability to handle derivation differently, which they previously didn't have. --- nixos/lib/make-options-doc/default.nix | 39 ++++++++++++------- .../make-options-doc/options-to-docbook.xsl | 2 +- .../lib/make-options-doc/optionsJSONtoXML.nix | 6 +++ 3 files changed, 33 insertions(+), 14 deletions(-) create mode 100644 nixos/lib/make-options-doc/optionsJSONtoXML.nix diff --git a/nixos/lib/make-options-doc/default.nix b/nixos/lib/make-options-doc/default.nix index 4e3f62544eb3..493006c92e7f 100644 --- a/nixos/lib/make-options-doc/default.nix +++ b/nixos/lib/make-options-doc/default.nix @@ -24,18 +24,25 @@ }: let - # Replace functions by the string - substFunction = x: - if builtins.isAttrs x then lib.mapAttrs (name: substFunction) x - else if builtins.isList x then map substFunction x + # Make a value safe for JSON. Functions are replaced by the string "", + # derivations are replaced with an attrset + # { _type = "derivation"; name = ; }. + # We need to handle derivations specially because consumers want to know about them, + # but we can't easily use the type,name subset of keys (since type is often used as + # a module option and might cause confusion). Use _type,name instead to the same + # effect, since _type is already used by the module system. + substSpecial = x: + if lib.isDerivation x then { _type = "derivation"; name = x.name; } + else if builtins.isAttrs x then lib.mapAttrs (name: substSpecial) x + else if builtins.isList x then map substSpecial x else if lib.isFunction x then "" else x; optionsList = lib.flip map optionsListVisible (opt: transformOptions opt - // lib.optionalAttrs (opt ? example) { example = substFunction opt.example; } - // lib.optionalAttrs (opt ? default) { default = substFunction opt.default; } - // lib.optionalAttrs (opt ? type) { type = substFunction opt.type; } + // lib.optionalAttrs (opt ? example) { example = substSpecial opt.example; } + // lib.optionalAttrs (opt ? default) { default = substSpecial opt.default; } + // lib.optionalAttrs (opt ? type) { type = substSpecial opt.type; } // lib.optionalAttrs (opt ? relatedPackages && opt.relatedPackages != []) { relatedPackages = genRelatedPackages opt.relatedPackages opt.name; } ); @@ -72,11 +79,6 @@ let # Remove invisible and internal options. optionsListVisible = lib.filter (opt: opt.visible && !opt.internal) (lib.optionAttrSetToDocList options); - # Convert the list of options into an XML file. - # This file is *not* sorted sorted to save on eval time, since the docbook XML - # and the manpage depend on it and thus we evaluate this on every system rebuild. - optionsXML = builtins.toFile "options.xml" (builtins.toXML optionsList); - optionsNix = builtins.listToAttrs (map (o: { name = o.name; value = removeAttrs o ["name" "visible" "internal"]; }) optionsList); in rec { @@ -110,7 +112,18 @@ in rec { mkdir -p $out/nix-support echo "file json $dst/options.json" >> $out/nix-support/hydra-build-products echo "file json-br $dst/options.json.br" >> $out/nix-support/hydra-build-products - ''; # */ + ''; + + # Convert options.json into an XML file. + # The actual generation of the xml file is done in nix purely for the convenience + # of not having to generate the xml some other way + optionsXML = pkgs.runCommand "options.xml" {} '' + ${pkgs.nix}/bin/nix-instantiate \ + --store dummy:// \ + --eval --xml --strict ${./optionsJSONtoXML.nix} \ + --argstr file ${optionsJSON}/share/doc/nixos/options.json \ + > "$out" + ''; optionsDocBook = pkgs.runCommand "options-docbook.xml" {} '' optionsXML=${optionsXML} diff --git a/nixos/lib/make-options-doc/options-to-docbook.xsl b/nixos/lib/make-options-doc/options-to-docbook.xsl index da4cd164bf20..b9ac26450514 100644 --- a/nixos/lib/make-options-doc/options-to-docbook.xsl +++ b/nixos/lib/make-options-doc/options-to-docbook.xsl @@ -189,7 +189,7 @@ - + (build of ) diff --git a/nixos/lib/make-options-doc/optionsJSONtoXML.nix b/nixos/lib/make-options-doc/optionsJSONtoXML.nix new file mode 100644 index 000000000000..ba50c5f898b5 --- /dev/null +++ b/nixos/lib/make-options-doc/optionsJSONtoXML.nix @@ -0,0 +1,6 @@ +{ file }: + +builtins.attrValues + (builtins.mapAttrs + (name: def: def // { inherit name; }) + (builtins.fromJSON (builtins.readFile file))) From c0f143fd0f745a27c178c2df842cf39ba05b771e Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Mon, 6 Dec 2021 16:54:52 +0000 Subject: [PATCH 078/278] emplace: 1.4.1 -> 1.4.2 --- pkgs/tools/package-management/emplace/default.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/tools/package-management/emplace/default.nix b/pkgs/tools/package-management/emplace/default.nix index 6b7f51d3ab69..07f17343cb7b 100644 --- a/pkgs/tools/package-management/emplace/default.nix +++ b/pkgs/tools/package-management/emplace/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "emplace"; - version = "1.4.1"; + version = "1.4.2"; src = fetchFromGitHub { owner = "tversteeg"; repo = pname; rev = "v${version}"; - sha256 = "sha256-lBCGSeEVxlXrn1RHqMEYSXLOehJw/DiL+33nx4+rV2Y="; + sha256 = "sha256-5PuSIOXns0FVLgyIw1mk8hZ/tYhikMV860BHTDlji78="; }; - cargoSha256 = "sha256-7LpUaOeBTIpi6A3cTRQAc1QostRgJp6bOf+AXy3mjyE="; + cargoSha256 = "sha256-UbbVjT5JQuVSCgbcelEVaAql4CUnCtO99zHp3Ei31Gs="; meta = with lib; { description = "Mirror installed software on multiple machines"; From 6274245368cd4f24c3cf0bf5fbb1cdfef54cef1a Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Mon, 6 Dec 2021 17:00:56 +0000 Subject: [PATCH 079/278] subgit: 3.3.11 -> 3.3.12 --- .../version-management/git-and-tools/subgit/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/applications/version-management/git-and-tools/subgit/default.nix b/pkgs/applications/version-management/git-and-tools/subgit/default.nix index 6d6a3a4f9882..fb3b521c8df9 100644 --- a/pkgs/applications/version-management/git-and-tools/subgit/default.nix +++ b/pkgs/applications/version-management/git-and-tools/subgit/default.nix @@ -2,7 +2,7 @@ stdenv.mkDerivation rec { pname = "subgit"; - version = "3.3.11"; + version = "3.3.12"; meta = { description = "A tool for a smooth, stress-free SVN to Git migration"; @@ -22,6 +22,6 @@ stdenv.mkDerivation rec { src = fetchurl { url = "https://subgit.com/download/subgit-${version}.zip"; - sha256 = "sha256-ltTpmXPCIGTmVDxKc6oelMEzQWXRbIf0NESzRugaXo0="; + sha256 = "sha256-Mdjm7rkF/iw3HBftCgXrbFCG00g/RowFcF/oeKLyzL0="; }; } From 8764e76473abdf21227a4be02aee0f9de4039267 Mon Sep 17 00:00:00 2001 From: Artturin Date: Mon, 6 Dec 2021 19:06:37 +0200 Subject: [PATCH 080/278] nixUnstable: 2.5pre20211126 -> 2.5pre20211206 --- pkgs/tools/package-management/nix/default.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/tools/package-management/nix/default.nix b/pkgs/tools/package-management/nix/default.nix index 0a897d963084..c0a90f5388f0 100644 --- a/pkgs/tools/package-management/nix/default.nix +++ b/pkgs/tools/package-management/nix/default.nix @@ -256,13 +256,13 @@ in rec { nixUnstable = lib.lowPrio (callPackage common rec { pname = "nix"; version = "2.5${suffix}"; - suffix = "pre20211126_${lib.substring 0 7 src.rev}"; + suffix = "pre20211206_${lib.substring 0 7 src.rev}"; src = fetchFromGitHub { owner = "NixOS"; repo = "nix"; - rev = "55275fcc5966cfad80fb6dc77b8d8939a2f1b8e0"; - sha256 = "sha256-jr85Z+0TA86mdsi3Y91wM3dFHWemmFHKdNwbx9rGz2U="; + rev = "d1aaa7ef71713b6693ad3ddf8704ce62bab82095"; + sha256 = "sha256-zdMODMLdJ0smEEzNMOoIzBxt9QWVzgMvr+pwxkhtD4g="; }; boehmgc = boehmgc_nixUnstable; From e2fcc2e69cb86dfc01c13e756ed6a512290ec756 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Mon, 6 Dec 2021 17:21:02 +0000 Subject: [PATCH 081/278] linuxKernel.packages.linux_5_15.system76-power: 1.1.18 -> 1.1.20 --- pkgs/os-specific/linux/system76-power/default.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/os-specific/linux/system76-power/default.nix b/pkgs/os-specific/linux/system76-power/default.nix index 8ef0e40312f5..edaf2b5c8144 100644 --- a/pkgs/os-specific/linux/system76-power/default.nix +++ b/pkgs/os-specific/linux/system76-power/default.nix @@ -2,19 +2,19 @@ rustPlatform.buildRustPackage rec { pname = "system76-power"; - version = "1.1.18"; + version = "1.1.20"; src = fetchFromGitHub { owner = "pop-os"; repo = "system76-power"; rev = version; - sha256 = "1zm06ywc3siwh2fpb8p7lp3xqjy4c08j8c8lipd6dyy3bakjh4r1"; + sha256 = "sha256-Qk9zHqwFlUTWE+YRt2GASIekbDoBCHPAUUN3+0wpvfw="; }; nativeBuildInputs = [ pkg-config ]; buildInputs = [ dbus libusb1 ]; - cargoSha256 = "0hda8cxa1pjz90bg215qmx5x2scz9mawq7irxbsw6zmcm7wahlii"; + cargoSha256 = "sha256-iG7M9ICFRTFVkbC89DyfR+Iyi7jaT9WmG3PSdBOF7YI="; postInstall = '' install -D -m 0644 data/system76-power.conf $out/etc/dbus-1/system.d/system76-power.conf From ff6776a47bfe4d1d83e74397b8ba8eabc54d70ec Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Mon, 6 Dec 2021 17:26:39 +0000 Subject: [PATCH 082/278] skaffold: 1.34.0 -> 1.35.1 --- pkgs/development/tools/skaffold/default.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/development/tools/skaffold/default.nix b/pkgs/development/tools/skaffold/default.nix index 5921f8d19d47..42aa91e9758b 100644 --- a/pkgs/development/tools/skaffold/default.nix +++ b/pkgs/development/tools/skaffold/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "skaffold"; - version = "1.34.0"; + version = "1.35.1"; src = fetchFromGitHub { owner = "GoogleContainerTools"; repo = "skaffold"; rev = "v${version}"; - sha256 = "sha256-y9y1aUy2fDvMuYCKU2g2lBSmX53NDy9v0XImHXqdJqM="; + sha256 = "sha256-+VnZoZhBooLue+82zOngij8PpH9/wtZkYiyfklHSpsQ="; }; - vendorSha256 = "sha256-h5UybTcvr9Zxpfw7zBCeSAG2oAZzFWpuYugqXUCMtjs="; + vendorSha256 = "sha256-jr4HEs2mTRPNAiV/OWUnjYyQ1uSUJfVOTNCRi/18tEo="; subPackages = ["cmd/skaffold"]; From fdeae3334584944c3b4559814dc319d2acd58101 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Mon, 6 Dec 2021 18:00:57 +0000 Subject: [PATCH 083/278] ergo: 4.0.15 -> 4.0.16 --- pkgs/applications/blockchains/ergo/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/applications/blockchains/ergo/default.nix b/pkgs/applications/blockchains/ergo/default.nix index 422ad8210de6..428919a55970 100644 --- a/pkgs/applications/blockchains/ergo/default.nix +++ b/pkgs/applications/blockchains/ergo/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "ergo"; - version = "4.0.15"; + version = "4.0.16"; src = fetchurl { url = "https://github.com/ergoplatform/ergo/releases/download/v${version}/ergo-${version}.jar"; - sha256 = "sha256-4omuu/9EeywWDkk//4TTal/1siCe/4YMmEsIefBxsuY="; + sha256 = "sha256-cdfpXJtN/JXQNBnCyTIvJLQQhjzDV3+l4WoASII9uuU="; }; nativeBuildInputs = [ makeWrapper ]; From 3adc92feb3dc69578b1e40b948629747417cae02 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Mon, 6 Dec 2021 18:06:14 +0000 Subject: [PATCH 084/278] esbuild: 0.13.12 -> 0.14.2 --- pkgs/development/tools/esbuild/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/tools/esbuild/default.nix b/pkgs/development/tools/esbuild/default.nix index 2c8e18f062e3..1258df45639b 100644 --- a/pkgs/development/tools/esbuild/default.nix +++ b/pkgs/development/tools/esbuild/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "esbuild"; - version = "0.13.12"; + version = "0.14.2"; src = fetchFromGitHub { owner = "evanw"; repo = "esbuild"; rev = "v${version}"; - sha256 = "sha256-1SjLbrOYEh0g9weVEqcOT7hMr9asxgSr+rKDNP75Sc4="; + sha256 = "sha256-ou1fkmlychf6VbKQD/PT1ehfyIQMIpbwEKlxpfncfEo="; }; vendorSha256 = "sha256-QPkBR+FscUc3jOvH7olcGUhM6OW4vxawmNJuRQxPuGs="; From 4d20574dd5ca7db3ee3588737e0881a6356d26ef Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Mon, 6 Dec 2021 18:17:23 +0000 Subject: [PATCH 085/278] stripe-cli: 1.7.4 -> 1.7.8 --- pkgs/tools/admin/stripe-cli/default.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/tools/admin/stripe-cli/default.nix b/pkgs/tools/admin/stripe-cli/default.nix index ea3ccc8162f8..f74b393bbbf3 100644 --- a/pkgs/tools/admin/stripe-cli/default.nix +++ b/pkgs/tools/admin/stripe-cli/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "stripe-cli"; - version = "1.7.4"; + version = "1.7.8"; src = fetchFromGitHub { owner = "stripe"; repo = pname; rev = "v${version}"; - sha256 = "sha256-2wiry3bBrxrhyyPT/81VpAS34XBZgZsz8Wlq8Qeybgk="; + sha256 = "sha256-QxfMfuqSxuyvzNC79sr4U0tdj2pSvGKQ28V3E523z+U="; }; - vendorSha256 = "sha256-Lgd1vGXlZw0s4dVC0TlGEYoGOLrJPc/bZ75Mzke4rrg="; + vendorSha256 = "sha256-Duu6lP87KKLC1eGIebycBSIPw7FN6BBxPexize9+jPE="; subPackages = [ "cmd/stripe" From c5632a07a5d5445605b6e6aa7aa4d14fd881b21c Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Mon, 6 Dec 2021 18:31:30 +0000 Subject: [PATCH 086/278] ethash: 0.7.1 -> 0.8.0 --- pkgs/development/libraries/ethash/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/libraries/ethash/default.nix b/pkgs/development/libraries/ethash/default.nix index 1283ec8cfab0..8d45a7186e74 100644 --- a/pkgs/development/libraries/ethash/default.nix +++ b/pkgs/development/libraries/ethash/default.nix @@ -2,14 +2,14 @@ stdenv.mkDerivation rec { pname = "ethash"; - version = "0.7.1"; + version = "0.8.0"; src = fetchFromGitHub { owner = "chfast"; repo = "ethash"; rev = "v${version}"; - sha256 = "sha256-ba8SBtJd0ERunO9KpJZkutkO6ZnZOEGzWn2IjO1Uu28="; + sha256 = "sha256-4SJk4niSpLPjymwTCD0kHOrqpMf+vE3J/O7DiffUSJ4="; }; nativeBuildInputs = [ From 99854e3a32de40e5c44646d23210370a1f04844c Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Mon, 6 Dec 2021 19:05:58 +0000 Subject: [PATCH 087/278] exoscale-cli: 1.46.0 -> 1.49.0 --- pkgs/tools/admin/exoscale-cli/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/tools/admin/exoscale-cli/default.nix b/pkgs/tools/admin/exoscale-cli/default.nix index af2500083304..d0af675ae408 100644 --- a/pkgs/tools/admin/exoscale-cli/default.nix +++ b/pkgs/tools/admin/exoscale-cli/default.nix @@ -2,13 +2,13 @@ buildGoPackage rec { pname = "exoscale-cli"; - version = "1.46.0"; + version = "1.49.0"; src = fetchFromGitHub { owner = "exoscale"; repo = "cli"; rev = "v${version}"; - sha256 = "sha256-dWbuzzFCBJuSUUQFXY3axK+T9rsMaIMOCKa0ig96bJE="; + sha256 = "sha256-R/EP+oNe6pebuTrWUZprajEcOTcaKG3li0hEb+4pTp0="; }; goPackagePath = "github.com/exoscale/cli"; From 8541b1178cc1d4bd9f131100585688e1871f2f7f Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Tue, 7 Dec 2021 09:04:29 +1100 Subject: [PATCH 088/278] rPackages.RandomFieldsUtils: x86 only --- pkgs/development/r-modules/default.nix | 2 ++ 1 file changed, 2 insertions(+) diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index 18f94da96699..21a2772d66df 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -1290,6 +1290,8 @@ let }); Rrdrand = old.Rrdrand.override { platforms = lib.platforms.x86_64 ++ lib.platforms.x86; }; + + RandomFieldsUtils = old.RandomFieldsUtils.override { platforms = lib.platforms.x86_64 ++ lib.platforms.x86; }; }; in self From f4c82e0d62e3b56115b1bbb840a2475d64098c04 Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Tue, 7 Dec 2021 09:20:20 +1100 Subject: [PATCH 089/278] rPackages.textshaping: fix build --- pkgs/development/r-modules/default.nix | 2 ++ 1 file changed, 2 insertions(+) diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index 21a2772d66df..98b6738aea89 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -491,6 +491,7 @@ let NanoMethViz = [ pkgs.zlib.dev ]; RcppMeCab = [ pkgs.pkg-config ]; HilbertVisGUI = with pkgs; [ pkg-config which ]; + textshaping = [ pkgs.pkg-config ]; }; packagesWithBuildInputs = { @@ -643,6 +644,7 @@ let RcppAlgos = [ pkgs.gmp.dev ]; RcppBigIntAlgos = [ pkgs.gmp.dev ]; HilbertVisGUI = [ pkgs.gnome2.gtkmm.dev ]; + textshaping = with pkgs; [ harfbuzz.dev freetype.dev fribidi libpng ]; }; packagesRequiringX = [ From 717914f31fdc96aec163d07ba31af68f16fc2b2c Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Tue, 7 Dec 2021 09:20:31 +1100 Subject: [PATCH 090/278] rPackages.DropletUtils: fix build --- pkgs/development/r-modules/default.nix | 1 + 1 file changed, 1 insertion(+) diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index 98b6738aea89..295b2211af2c 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -645,6 +645,7 @@ let RcppBigIntAlgos = [ pkgs.gmp.dev ]; HilbertVisGUI = [ pkgs.gnome2.gtkmm.dev ]; textshaping = with pkgs; [ harfbuzz.dev freetype.dev fribidi libpng ]; + DropletUtils = [ pkgs.zlib.dev ]; }; packagesRequiringX = [ From bedc496ddeee4d94de4eb817ec2c977d56870e87 Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Tue, 7 Dec 2021 09:20:44 +1100 Subject: [PATCH 091/278] rPackages.RMariaDB: fix build --- pkgs/development/r-modules/default.nix | 1 + 1 file changed, 1 insertion(+) diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index 295b2211af2c..32ee4eba25a6 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -646,6 +646,7 @@ let HilbertVisGUI = [ pkgs.gnome2.gtkmm.dev ]; textshaping = with pkgs; [ harfbuzz.dev freetype.dev fribidi libpng ]; DropletUtils = [ pkgs.zlib.dev ]; + RMariaDB = [ pkgs.libmysqlclient.dev ]; }; packagesRequiringX = [ From bd49665b8f540c3db914af61c492de49e61fbeab Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Tue, 7 Dec 2021 09:21:00 +1100 Subject: [PATCH 092/278] rPackages.x13binary: remove double occurance in broken list --- pkgs/development/r-modules/default.nix | 1 - 1 file changed, 1 deletion(-) diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index 32ee4eba25a6..c5b470a0f27b 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -898,7 +898,6 @@ let brokenPackages = [ "av" "NetLogoR" - "x13binary" "valse" "HierO" "HIBAG" From 03df8c8b88a6c56dccff813ba3d52c607902c238 Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Tue, 7 Dec 2021 09:21:17 +1100 Subject: [PATCH 093/278] rPackages.flowClust: x86 only --- pkgs/development/r-modules/default.nix | 2 ++ 1 file changed, 2 insertions(+) diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index c5b470a0f27b..e1a4855f9714 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -1295,6 +1295,8 @@ let Rrdrand = old.Rrdrand.override { platforms = lib.platforms.x86_64 ++ lib.platforms.x86; }; RandomFieldsUtils = old.RandomFieldsUtils.override { platforms = lib.platforms.x86_64 ++ lib.platforms.x86; }; + + flowClust = old.flowClust.override { platforms = lib.platforms.x86_64 ++ lib.platforms.x86; }; }; in self From 942263df96dbbe2461b9f2a76f7f16e93ef87cf8 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Mon, 6 Dec 2021 22:26:54 +0000 Subject: [PATCH 094/278] flow: 0.163.0 -> 0.166.1 --- pkgs/development/tools/analysis/flow/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/tools/analysis/flow/default.nix b/pkgs/development/tools/analysis/flow/default.nix index 54cea3727f21..9c84ba8979e2 100644 --- a/pkgs/development/tools/analysis/flow/default.nix +++ b/pkgs/development/tools/analysis/flow/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "flow"; - version = "0.163.0"; + version = "0.166.1"; src = fetchFromGitHub { owner = "facebook"; repo = "flow"; rev = "v${version}"; - sha256 = "sha256-8O7EuYMNEa0M3HS0U10VbkevxL/cnySXHkT1WdI4Z84="; + sha256 = "sha256-n07P7C+RehZJ+s7ZAgtHBMUwG62rxbjcXKLjKJf+rDA="; }; installPhase = '' From f01d449b68465485a509f29820a0dca9f30d9b13 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Mon, 6 Dec 2021 22:38:29 +0000 Subject: [PATCH 095/278] fluxctl: 1.24.1 -> 1.24.3 --- pkgs/applications/networking/cluster/fluxctl/default.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/applications/networking/cluster/fluxctl/default.nix b/pkgs/applications/networking/cluster/fluxctl/default.nix index fd6a314ecacc..af0db3f2c176 100644 --- a/pkgs/applications/networking/cluster/fluxctl/default.nix +++ b/pkgs/applications/networking/cluster/fluxctl/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "fluxctl"; - version = "1.24.1"; + version = "1.24.3"; src = fetchFromGitHub { owner = "weaveworks"; repo = "flux"; rev = version; - sha256 = "sha256-lgcEkOu4iaLg+tP826Qpgmn0ogOpr62o1iWlv1yLbBQ="; + sha256 = "sha256-i86WwSR14hxaXWMesvG2mG8nqXd97M3TekK2FLTLL+Y="; }; - vendorSha256 = "sha256-NQonBTHToGPo7QsChvuVM/jbV5FK71HMJfe5fe1gZYw="; + vendorSha256 = "sha256-Fw3/SMO66eExlDNcIaHM+G2kB4zb1Cih7kp8xfel/iY="; nativeBuildInputs = [ installShellFiles ]; From abe233632fd07b736e90fc3f7440811cf802b9d5 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Mon, 6 Dec 2021 23:35:33 +0000 Subject: [PATCH 096/278] rocksdb: 6.26.0 -> 6.26.1 --- pkgs/development/libraries/rocksdb/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/libraries/rocksdb/default.nix b/pkgs/development/libraries/rocksdb/default.nix index 83cdeecab2eb..b6a745566b70 100644 --- a/pkgs/development/libraries/rocksdb/default.nix +++ b/pkgs/development/libraries/rocksdb/default.nix @@ -15,13 +15,13 @@ stdenv.mkDerivation rec { pname = "rocksdb"; - version = "6.26.0"; + version = "6.26.1"; src = fetchFromGitHub { owner = "facebook"; repo = pname; rev = "v${version}"; - sha256 = "1nd8ixj249qiw089piw28aly0zmlla2k62gd6axd0bs2wfc4zma8"; + sha256 = "sha256-Tx809Q/Mn5C9LbtmTlJN9eDGWPDpJSRhnyNxA4Kq1Fc="; }; nativeBuildInputs = [ cmake ninja ]; From 7d1ec570c9ef8a62ab4617798a1a7e093786cb38 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Tue, 7 Dec 2021 00:23:17 +0000 Subject: [PATCH 097/278] git-town: 7.5.0 -> 7.6.0 --- pkgs/tools/misc/git-town/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/tools/misc/git-town/default.nix b/pkgs/tools/misc/git-town/default.nix index 18f251fb7208..27eb1275a2da 100644 --- a/pkgs/tools/misc/git-town/default.nix +++ b/pkgs/tools/misc/git-town/default.nix @@ -2,14 +2,14 @@ buildGoPackage rec { pname = "git-town"; - version = "7.5.0"; + version = "7.6.0"; goPackagePath = "github.com/git-town/git-town"; src = fetchFromGitHub { owner = "git-town"; repo = "git-town"; rev = "v${version}"; - sha256 = "sha256-RmLDlTK+JO2KRLuLvO927W3WYdDlteBIpgTgDXh8lC8="; + sha256 = "sha256-yarJWIEIZuBcXXxltkiM7LwrEM8fveD3+JVoPGarhJQ="; }; ldflags = [ "-X github.com/git-town/git-town/src/cmd.version=v${version}" "-X github.com/git-town/git-town/src/cmd.buildDate=nix" ]; From ee1c65e483e49058e5827d9eabdbbc280f3ab7b6 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Tue, 7 Dec 2021 00:26:26 +0000 Subject: [PATCH 098/278] shadowsocks-rust: 1.11.2 -> 1.12.4 --- pkgs/tools/networking/shadowsocks-rust/default.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/tools/networking/shadowsocks-rust/default.nix b/pkgs/tools/networking/shadowsocks-rust/default.nix index 065b842c384f..c2ae4020eedf 100644 --- a/pkgs/tools/networking/shadowsocks-rust/default.nix +++ b/pkgs/tools/networking/shadowsocks-rust/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "shadowsocks-rust"; - version = "1.11.2"; + version = "1.12.4"; src = fetchFromGitHub { rev = "v${version}"; owner = "shadowsocks"; repo = pname; - sha256 = "0ry3zfwxs5j243jpbp5ymnz14ycyk6gpgb50lcazhn1yy52p8wac"; + sha256 = "sha256-gPeikQ6a7GFgjGIwcufMCnGgqqVzHkMbQIgIPpBuOLE="; }; - cargoSha256 = "1hvrp3zf5h33j6fgqyzn2jvjbyi8c8pyqwrj5wg3lw38h0z5rvaj"; + cargoSha256 = "sha256-8qt8uapiFMhmPnbihqWoBalGV6LLsgg0pfxzw+gi4TI="; RUSTC_BOOTSTRAP = 1; From 1fdf1a462d1401dcae72280d0ca3cf6b511e2a18 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Tue, 7 Dec 2021 00:52:48 +0000 Subject: [PATCH 099/278] gmailctl: 0.9.0 -> 0.10.0 --- pkgs/applications/networking/gmailctl/default.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/applications/networking/gmailctl/default.nix b/pkgs/applications/networking/gmailctl/default.nix index 8d0b9915d0d7..1cd5b9344790 100644 --- a/pkgs/applications/networking/gmailctl/default.nix +++ b/pkgs/applications/networking/gmailctl/default.nix @@ -6,13 +6,13 @@ buildGoModule rec { pname = "gmailctl"; - version = "0.9.0"; + version = "0.10.0"; src = fetchFromGitHub { owner = "mbrt"; repo = "gmailctl"; rev = "v${version}"; - sha256 = "sha256-1gOixuOvPHEjnnDNNda9sktnhffovOfeG4XDrLRRMlE="; + sha256 = "sha256-JuE8+OW+qM6tir4A25tN2GTXQIkcKVE4uKbZNSTcNlA="; }; nativeBuildInputs = [ @@ -26,7 +26,7 @@ buildGoModule rec { --zsh <($out/bin/gmailctl completion zsh) ''; - vendorSha256 = "sha256-Yv3OGHFOmenst/ujUgvCaSEjwwBf3W9n+55ztVhuWjo="; + vendorSha256 = "sha256-zEWEcv6G/9tmM6/+lhMFkyew3r/pvQRjvh74BENTYI4="; doCheck = false; From 491ef7707daa3e2e1276efa12f91256aebb848e9 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Tue, 7 Dec 2021 01:01:43 +0000 Subject: [PATCH 100/278] scowl: 2019.10.06 -> 2020.12.07 --- pkgs/data/misc/scowl/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/data/misc/scowl/default.nix b/pkgs/data/misc/scowl/default.nix index 15c2699d8bba..e1709ae35cf3 100644 --- a/pkgs/data/misc/scowl/default.nix +++ b/pkgs/data/misc/scowl/default.nix @@ -4,13 +4,13 @@ stdenv.mkDerivation rec { pname = "scowl"; - version = "2019.10.06"; + version = "2020.12.07"; src = fetchFromGitHub { owner = "en-wl"; repo = "wordlist"; rev = "rel-${version}"; - sha256 = "1daag7h63gdijp1lv3v93bx5kmcb5zsyydsd57kv0a6kk3vs819x"; + sha256 = "sha256-J61jhpnZcXMnoGlSuSCrKDZnnyp3Snjr+fUpTVKX64g="; }; postPatch = '' From 978eae58e594b0bec842a851696428302a5d4d0b Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Tue, 7 Dec 2021 01:17:53 +0000 Subject: [PATCH 101/278] go-tools: 2021.1.1 -> 2021.1.2 --- pkgs/development/tools/go-tools/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/tools/go-tools/default.nix b/pkgs/development/tools/go-tools/default.nix index 38ed470cbe90..0812c949e37e 100644 --- a/pkgs/development/tools/go-tools/default.nix +++ b/pkgs/development/tools/go-tools/default.nix @@ -5,13 +5,13 @@ buildGoModule rec { pname = "go-tools"; - version = "2021.1.1"; + version = "2021.1.2"; src = fetchFromGitHub { owner = "dominikh"; repo = "go-tools"; rev = version; - sha256 = "sha256-Vj5C+PIzZUSD16U4KFO3jR/Gq11P8v3my5eODWb//4c="; + sha256 = "sha256-C6ekgrc+zvm8ZLvw1uYR3ZiMLCNSUw1ANEuM4bT4C/o="; }; vendorSha256 = "sha256-EjCOMdeJ0whp2pHZvm4VV2K78UNKzl98Z/cQvGhWSyY="; From 211f4371818fa24fb9fd5b2dc3706b0f1bb136ac Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Tue, 7 Dec 2021 05:07:38 +0000 Subject: [PATCH 102/278] i3status-rust: 0.20.6 -> 0.20.7 --- pkgs/applications/window-managers/i3/status-rust.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/applications/window-managers/i3/status-rust.nix b/pkgs/applications/window-managers/i3/status-rust.nix index a285c4b5a54a..019ac1377240 100644 --- a/pkgs/applications/window-managers/i3/status-rust.nix +++ b/pkgs/applications/window-managers/i3/status-rust.nix @@ -12,16 +12,16 @@ rustPlatform.buildRustPackage rec { pname = "i3status-rust"; - version = "0.20.6"; + version = "0.20.7"; src = fetchFromGitHub { owner = "greshake"; repo = pname; rev = "v${version}"; - sha256 = "sha256-FLMfXloAAIz/9KAtKFfB8uokQz/J8R+WsGarq/5cblo="; + sha256 = "sha256-7RfDNjTUQtVZUeRGBnd2ygSkFJOoPrNF/Bwy8GWo7To="; }; - cargoSha256 = "sha256-UVAF2rz0y6h3/rcTJ+31mMyJDLG7q40n6vBK8Wxultg="; + cargoSha256 = "sha256-alZJm2/hhloKQn7QeUA2IMgGl86Lz8xNpZkoMHCcjVI="; nativeBuildInputs = [ pkg-config makeWrapper ]; From b9fc29de15712ca062329a1ec84040d0a1f81c04 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Tue, 7 Dec 2021 05:20:04 +0000 Subject: [PATCH 103/278] icingaweb2: 2.9.4 -> 2.9.5 --- pkgs/servers/icingaweb2/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/servers/icingaweb2/default.nix b/pkgs/servers/icingaweb2/default.nix index 3602f5b01047..7a0d75dab24d 100644 --- a/pkgs/servers/icingaweb2/default.nix +++ b/pkgs/servers/icingaweb2/default.nix @@ -2,13 +2,13 @@ stdenvNoCC.mkDerivation rec { pname = "icingaweb2"; - version = "2.9.4"; + version = "2.9.5"; src = fetchFromGitHub { owner = "Icinga"; repo = "icingaweb2"; rev = "v${version}"; - sha256 = "sha256:1fd5d2vhiq3s7qr4hnvnh9vv4ns7dvqwq8s67av89hjf3sqgw13j"; + sha256 = "sha256-yKnG+wxWVgLwG9hRRiLPmNzm9pBrf/mh5V/lLdj8Sv8="; }; nativeBuildInputs = [ makeWrapper ]; From 980281f4235959b09c77e7c2e01b5964e646c444 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Tue, 7 Dec 2021 05:32:37 +0000 Subject: [PATCH 104/278] imgproxy: 2.17.0 -> 3.0.0 --- pkgs/servers/imgproxy/default.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/servers/imgproxy/default.nix b/pkgs/servers/imgproxy/default.nix index b71592e8f0f6..3c5e901dfb89 100644 --- a/pkgs/servers/imgproxy/default.nix +++ b/pkgs/servers/imgproxy/default.nix @@ -3,16 +3,16 @@ buildGoModule rec { pname = "imgproxy"; - version = "2.17.0"; + version = "3.0.0"; src = fetchFromGitHub { owner = pname; repo = pname; - sha256 = "sha256-afprMKFyuo1Doi5K5EtzdiQY+fbx2LtEh3xxnPr+yjk="; + sha256 = "sha256-r9nT4nAzD6xBTB9jfmPfE7vKs4tgrdGPWOptRpqh5TM="; rev = "v${version}"; }; - vendorSha256 = "sha256-aV+A2duS13Zi9IPa7bd/tBe5NzmUhKYsXzvluuIFc+I="; + vendorSha256 = "sha256-7LRxR6ISV+A30NSztlAlfjMjgnXZpHq3aMAKGoHJtNY="; doCheck = false; From 0ec9da17847af17077e6c1ea84c6f896c4911bcc Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Tue, 7 Dec 2021 05:47:04 +0000 Subject: [PATCH 105/278] intel-cmt-cat: 4.2.0 -> 4.3.0 --- pkgs/os-specific/linux/intel-cmt-cat/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/os-specific/linux/intel-cmt-cat/default.nix b/pkgs/os-specific/linux/intel-cmt-cat/default.nix index 748ae5b52670..af194d9dc1ca 100644 --- a/pkgs/os-specific/linux/intel-cmt-cat/default.nix +++ b/pkgs/os-specific/linux/intel-cmt-cat/default.nix @@ -1,14 +1,14 @@ { lib, stdenv, fetchFromGitHub }: stdenv.mkDerivation rec { - version = "4.2.0"; + version = "4.3.0"; pname = "intel-cmt-cat"; src = fetchFromGitHub { owner = "intel"; repo = "intel-cmt-cat"; rev = "v${version}"; - sha256 = "sha256-k66FZI76d9HcWEMwEgOlObdPmRhuK5h2GKXOzUY0BKQ="; + sha256 = "sha256-9XZuSHWcAFN5otBfG8xE4gTIDixw7mYnHT/CTjyOvwo="; }; enableParallelBuilding = true; From f602a5d312de93acd8ccf58b3905c8d197f19888 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Tue, 7 Dec 2021 06:03:46 +0000 Subject: [PATCH 106/278] libsForQt5.qtutilities: 6.5.1 -> 6.5.2 --- pkgs/development/libraries/qtutilities/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/libraries/qtutilities/default.nix b/pkgs/development/libraries/qtutilities/default.nix index 260e61284040..d2a700cdfe4e 100644 --- a/pkgs/development/libraries/qtutilities/default.nix +++ b/pkgs/development/libraries/qtutilities/default.nix @@ -9,13 +9,13 @@ stdenv.mkDerivation rec { pname = "qtutilities"; - version = "6.5.1"; + version = "6.5.2"; src = fetchFromGitHub { owner = "Martchus"; repo = pname; rev = "v${version}"; - sha256 = "sha256-J5yPezXU+AIvmLTBs4lWU35DvfP+0EuuhOJpxAzwRtw="; + sha256 = "sha256-/2gw6k6RUYBRnKJ85C8sDBCCcBEfkRU+MCgWi5/Z2hc="; }; buildInputs = [ qtbase cpp-utilities ]; From 220ec06fae76185a9c5ef3104b86a96d32320e32 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Tue, 7 Dec 2021 06:06:38 +0000 Subject: [PATCH 107/278] ip2location-c: 8.4.0 -> 8.4.1 --- pkgs/development/libraries/ip2location-c/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/libraries/ip2location-c/default.nix b/pkgs/development/libraries/ip2location-c/default.nix index 510bc162501d..40a5d834f71a 100644 --- a/pkgs/development/libraries/ip2location-c/default.nix +++ b/pkgs/development/libraries/ip2location-c/default.nix @@ -6,13 +6,13 @@ stdenv.mkDerivation rec { pname = "ip2location-c"; - version = "8.4.0"; + version = "8.4.1"; src = fetchFromGitHub { owner = "chrislim2888"; repo = "IP2Location-C-Library"; rev = version; - sha256 = "0rqjgmv62s7abiiqi3ff3ff838qx4pzr509irmzvqlflnkxxi0q6"; + sha256 = "sha256-a2ekDi8+08Mm/OsWZbahcpFMPNqmv+cECAONQLynhSY="; }; nativeBuildInputs = [ From ff8af27f7b0e057e5e88165c3b2bd727a5f876c5 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Tue, 7 Dec 2021 06:26:58 +0000 Subject: [PATCH 108/278] istioctl: 1.11.4 -> 1.11.5 --- pkgs/applications/networking/cluster/istioctl/default.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/applications/networking/cluster/istioctl/default.nix b/pkgs/applications/networking/cluster/istioctl/default.nix index acf9cea24e6b..c4c4ff42c05c 100644 --- a/pkgs/applications/networking/cluster/istioctl/default.nix +++ b/pkgs/applications/networking/cluster/istioctl/default.nix @@ -2,15 +2,15 @@ buildGoModule rec { pname = "istioctl"; - version = "1.11.4"; + version = "1.11.5"; src = fetchFromGitHub { owner = "istio"; repo = "istio"; rev = version; - sha256 = "sha256-DkZRRjnTWziAL6WSPy5V8fgjpRO2g3Ew25j3F47pDnk="; + sha256 = "sha256-GngjZnE6G/7Iz/BFUKciZAnk/FjcSngt9H+M23E3hHk="; }; - vendorSha256 = "sha256-kioicA4vdWuv0mvpjZRH0r1EuosS06Q3hIEkxdV4/1A="; + vendorSha256 = "sha256-MzlDChyuEVfcfS0DLf/FqKXk3qzsqwO3ZBVJlZqrNhg="; doCheck = false; From 104f405c265a1566163b207b27c7c0584978d13e Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Tue, 7 Dec 2021 06:50:24 +0000 Subject: [PATCH 109/278] libsForQt5.quazip: 1.1 -> 1.2 --- pkgs/development/libraries/quazip/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/libraries/quazip/default.nix b/pkgs/development/libraries/quazip/default.nix index 4184f3276c06..e670d6bd916d 100644 --- a/pkgs/development/libraries/quazip/default.nix +++ b/pkgs/development/libraries/quazip/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "quazip"; - version = "1.1"; + version = "1.2"; src = fetchFromGitHub { owner = "stachenov"; repo = pname; rev = "v${version}"; - sha256 = "06srglrj6jvy5ngmidlgx03i0d5w91yhi7sf846wql00v8rvhc5h"; + sha256 = "sha256-fsEMmbatTB1s8JnUYE18/vj2FZ2b40zHoOlL2OVplLc="; }; buildInputs = [ zlib qtbase ]; From c2937cd4a887606de956f3fef84e06c665c57cbe Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Tue, 7 Dec 2021 07:16:05 +0000 Subject: [PATCH 110/278] jp2a: 1.1.0 -> 1.1.1 --- pkgs/applications/misc/jp2a/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/applications/misc/jp2a/default.nix b/pkgs/applications/misc/jp2a/default.nix index 96d506b556e5..28100135d83d 100644 --- a/pkgs/applications/misc/jp2a/default.nix +++ b/pkgs/applications/misc/jp2a/default.nix @@ -11,14 +11,14 @@ }: stdenv.mkDerivation rec { - version = "1.1.0"; + version = "1.1.1"; pname = "jp2a"; src = fetchFromGitHub { owner = "Talinx"; repo = "jp2a"; rev = "v${version}"; - sha256 = "1dz2mrhl45f0vwyfx7qc3665xma78q024c10lfsgn6farrr0c2lb"; + sha256 = "sha256-CUyJMVvzXniK5fdZBuWUK9GLSGJyL5Zig49ikGOGRTw="; }; makeFlags = [ "PREFIX=$(out)" ]; From 6fa6514e56b4b752c5d2025042ac2e74af386d54 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?J=C3=B6rg=20Thalheim?= Date: Tue, 7 Dec 2021 08:25:15 +0100 Subject: [PATCH 111/278] radare2: 5.4.2 -> 5.5.2 --- .../development/tools/analysis/radare2/default.nix | 14 ++++++++++++-- 1 file changed, 12 insertions(+), 2 deletions(-) diff --git a/pkgs/development/tools/analysis/radare2/default.nix b/pkgs/development/tools/analysis/radare2/default.nix index 8cbfed0b16f9..ef311a8c6ed2 100644 --- a/pkgs/development/tools/analysis/radare2/default.nix +++ b/pkgs/development/tools/analysis/radare2/default.nix @@ -34,21 +34,31 @@ let rev = "3c5eaba46dab72ecb7d5f5b865a13fdeee95b464"; sha256 = "sha256-alcGEi+D8CptXzfznnuxQKCvU2mbzn2sQge5jSqLVpg="; }; + armv7 = fetchFromGitHub { + owner = "radareorg"; + repo = "vector35-arch-armv7"; + rev = "dde39f69ffea19fc37e681874b12cb4707bc4f30"; + + sha256 = "sha256-bnWQc0dScM9rhIdzf+iVXvMqYWq/bguEAUQPaZRgdlU="; + }; in stdenv.mkDerivation rec { pname = "radare2"; - version = "5.4.2"; + version = "5.5.2"; src = fetchFromGitHub { owner = "radare"; repo = "radare2"; rev = version; - sha256 = "sha256-5GvJ7J+pAL8GIZ4Tv09wdGyihfMm1bUABhmf7ozQoxc="; + sha256 = "sha256-7nygSugqOYhK0lXEy3BSr5h5+GTfLBG/1O6TyKhk++c="; }; preBuild = '' cp -r ${arm64} libr/asm/arch/arm/v35arm64/arch-arm64 chmod -R +w libr/asm/arch/arm/v35arm64/arch-arm64 + + cp -r ${armv7} libr/asm/arch/arm/v35arm64/arch-armv7 + chmod -R +w libr/asm/arch/arm/v35arm64/arch-armv7 ''; postFixup = lib.optionalString stdenv.isDarwin '' From 13ab11bf602cb0b14bdd5dab2dd2b4079b2b8fc2 Mon Sep 17 00:00:00 2001 From: Justin Bedo Date: Tue, 7 Dec 2021 19:18:05 +1100 Subject: [PATCH 112/278] rPackages: fix whitespace --- pkgs/development/r-modules/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index e1a4855f9714..1c9c479edd47 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -1293,9 +1293,9 @@ let }); Rrdrand = old.Rrdrand.override { platforms = lib.platforms.x86_64 ++ lib.platforms.x86; }; - + RandomFieldsUtils = old.RandomFieldsUtils.override { platforms = lib.platforms.x86_64 ++ lib.platforms.x86; }; - + flowClust = old.flowClust.override { platforms = lib.platforms.x86_64 ++ lib.platforms.x86; }; }; in From 742646712cc05823c3ba51f43242737a86fc8e14 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Tue, 7 Dec 2021 08:21:48 +0000 Subject: [PATCH 113/278] kotlin-language-server: 1.1.2 -> 1.2.0 --- pkgs/development/tools/kotlin-language-server/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/tools/kotlin-language-server/default.nix b/pkgs/development/tools/kotlin-language-server/default.nix index 510cd1f60f30..144c159f3637 100644 --- a/pkgs/development/tools/kotlin-language-server/default.nix +++ b/pkgs/development/tools/kotlin-language-server/default.nix @@ -2,10 +2,10 @@ stdenv.mkDerivation rec { pname = "kotlin-language-server"; - version = "1.1.2"; + version = "1.2.0"; src = fetchurl { url = "https://github.com/fwcd/kotlin-language-server/releases/download/${version}/server.zip"; - sha256 = "d8850ee2be8c49e5e642c4a41f52304098ae0bcce009e4d91531a9aeecd64916"; + sha256 = "sha256-GXr+sOGa09qeQrfaJYRPsoHULwfMst8tTr4y2cv752k="; }; dontBuild = true; From 6776d13d5c60c03231f8916dc056f39c0641bbac Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Tue, 7 Dec 2021 08:38:54 +0000 Subject: [PATCH 114/278] kube3d: 5.0.3 -> 5.2.0 --- pkgs/applications/networking/cluster/kube3d/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/applications/networking/cluster/kube3d/default.nix b/pkgs/applications/networking/cluster/kube3d/default.nix index b30d6999470c..86fcb2c72229 100644 --- a/pkgs/applications/networking/cluster/kube3d/default.nix +++ b/pkgs/applications/networking/cluster/kube3d/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "kube3d"; - version = "5.0.3"; + version = "5.2.0"; src = fetchFromGitHub { owner = "rancher"; repo = "k3d"; rev = "v${version}"; - sha256 = "sha256-BUQG+Nq5BsL+4oBksL8Im9CtNFvwuaW/HebMp9VoORo="; + sha256 = "sha256-xtYoyA5tcCjNbDysZn5yFQtMKLIu6DOHKH5vDMDCrZQ="; }; vendorSha256 = null; From a10948e8b2c181118a3ba91bddbbc4a2008de65d Mon Sep 17 00:00:00 2001 From: sternenseemann Date: Tue, 7 Dec 2021 09:59:17 +0100 Subject: [PATCH 115/278] emacs.pkgs.bqn-mode: 2021-10-26 -> 2021-12-04 --- .../editors/emacs/elisp-packages/bqn-mode/default.nix | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/pkgs/applications/editors/emacs/elisp-packages/bqn-mode/default.nix b/pkgs/applications/editors/emacs/elisp-packages/bqn-mode/default.nix index f74402f5e6ef..591777831ed4 100644 --- a/pkgs/applications/editors/emacs/elisp-packages/bqn-mode/default.nix +++ b/pkgs/applications/editors/emacs/elisp-packages/bqn-mode/default.nix @@ -5,13 +5,13 @@ trivialBuild { pname = "bqn-mode"; - version = "0.pre+unstable=2021-10-26"; + version = "0.pre+unstable=2021-12-04"; src = fetchFromGitHub { - owner = "AndersonTorres"; + owner = "museoa"; repo = "bqn-mode"; - rev = "89d6928d0653518c97bcb06ae156f8b1de1b8768"; - sha256 = "0pnvfssglaqbjw6hw7vf7vffzjdbqscqhyl62vknml29yl7mjq05"; + rev = "38fba1193e0d1101f3b90bd76e419c011651ad6f"; + sha256 = "0fdfz3kmrdgmx2i6fgrrj1cvapvrgnc3ahnwx3aayrpl1f091439"; }; meta = with lib; { From 97ea5cc073f2bef8b809f2daae8117390755419b Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Tue, 7 Dec 2021 09:29:04 +0000 Subject: [PATCH 116/278] python38Packages.plac: 1.3.3 -> 1.3.4 --- pkgs/development/python-modules/plac/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/python-modules/plac/default.nix b/pkgs/development/python-modules/plac/default.nix index 2bd50d87dc0b..3d2094263b6f 100644 --- a/pkgs/development/python-modules/plac/default.nix +++ b/pkgs/development/python-modules/plac/default.nix @@ -5,11 +5,11 @@ }: buildPythonPackage rec { pname = "plac"; - version = "1.3.3"; + version = "1.3.4"; src = fetchPypi { inherit pname version; - sha256 = "51e332dabc2aed2cd1f038be637d557d116175101535f53eaa7ae854a00f2a74"; + sha256 = "c91a4c9f9cc67c7e7213b6823b0ea15cd0afe5eaf8f8dda1fe5cb10192b137f5"; }; checkPhase = '' From 714bdbf6eb51a876189acdfe3db5f4c1d69088a3 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Tue, 7 Dec 2021 10:52:47 +0000 Subject: [PATCH 117/278] libplctag: 2.4.2 -> 2.4.6 --- pkgs/development/libraries/libplctag/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/libraries/libplctag/default.nix b/pkgs/development/libraries/libplctag/default.nix index e17f8d6e239b..a326cbc00468 100644 --- a/pkgs/development/libraries/libplctag/default.nix +++ b/pkgs/development/libraries/libplctag/default.nix @@ -6,13 +6,13 @@ stdenv.mkDerivation rec { pname = "libplctag"; - version = "2.4.2"; + version = "2.4.6"; src = fetchFromGitHub { owner = "libplctag"; repo = "libplctag"; rev = "v${version}"; - sha256 = "sha256-LyFCKWOjqSHWGBm2p52R/eYuPjtf5IfqqMtrLCNWIV8="; + sha256 = "sha256-e7WDXaFu4ujrxqSvAq2Y2MbUR1ItlKOYm9dNSPbdaMo="; }; nativeBuildInputs = [ cmake ]; From 4b803adbae7a1cc692c085e3692b8607e53ff8c4 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Tue, 7 Dec 2021 13:00:13 +0000 Subject: [PATCH 118/278] mark: 6.4 -> 6.5.1 --- pkgs/tools/text/mark/default.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/tools/text/mark/default.nix b/pkgs/tools/text/mark/default.nix index 229be7448c52..a0abd672559e 100644 --- a/pkgs/tools/text/mark/default.nix +++ b/pkgs/tools/text/mark/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "mark"; - version = "6.4"; + version = "6.5.1"; src = fetchFromGitHub { owner = "kovetskiy"; repo = "mark"; rev = version; - sha256 = "sha256-Ti7qxNb+7S67bXdvEWPyi/v/OAsAI4pd41dlF7GFjjo="; + sha256 = "sha256-NTe7J08Lu4uVI/mLj4m87n1BZXiUPDvi5OtjJfddJw8="; }; - vendorSha256 = "sha256-y3Q8UebNbLy1jmxUC37mv+2l8dCU3b/Fk8XHn5u57p0="; + vendorSha256 = "sha256-Yp47FBS8JN/idBfZG0z0f2A1bzob8KTPtZ7u0cNCrM8="; ldflags = [ "-s" "-w" "-X main.version=${version}" ]; From 192e4796d9d6bfb9b155bcd77bac78809a79261c Mon Sep 17 00:00:00 2001 From: Vonfry Date: Mon, 6 Dec 2021 08:45:56 +0800 Subject: [PATCH 119/278] fcitx5-chinese-addons: 5.0.6 -> 5.0.9 --- pkgs/tools/inputmethods/fcitx5/fcitx5-chinese-addons.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/tools/inputmethods/fcitx5/fcitx5-chinese-addons.nix b/pkgs/tools/inputmethods/fcitx5/fcitx5-chinese-addons.nix index 3a4a38c6b708..b52d03b7743f 100644 --- a/pkgs/tools/inputmethods/fcitx5/fcitx5-chinese-addons.nix +++ b/pkgs/tools/inputmethods/fcitx5/fcitx5-chinese-addons.nix @@ -31,13 +31,13 @@ in mkDerivation rec { pname = "fcitx5-chinese-addons"; - version = "5.0.6"; + version = "5.0.9"; src = fetchFromGitHub { owner = "fcitx"; repo = "fcitx5-chinese-addons"; rev = version; - sha256 = "sha256-+DhXFqUxECGZYHAmEw5cZJQnRHHgvT0nVVqY9DXgWBU="; + sha256 = "sha256-GnFIbvbLkL8YkLA3ziS8gBia9juDOkQWRcrXIPJAjLc="; }; cmakeFlags = [ From 74d19521a03ee5d70fe5c886e0d197f3d6479ee3 Mon Sep 17 00:00:00 2001 From: Vonfry Date: Mon, 6 Dec 2021 08:47:19 +0800 Subject: [PATCH 120/278] fcitx5-m17n: 5.0.5 -> 5.0.6 --- pkgs/tools/inputmethods/fcitx5/fcitx5-m17n.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/tools/inputmethods/fcitx5/fcitx5-m17n.nix b/pkgs/tools/inputmethods/fcitx5/fcitx5-m17n.nix index 9a90ab3ca7d7..a8a1cd0eb7a3 100644 --- a/pkgs/tools/inputmethods/fcitx5/fcitx5-m17n.nix +++ b/pkgs/tools/inputmethods/fcitx5/fcitx5-m17n.nix @@ -13,13 +13,13 @@ stdenv.mkDerivation rec { pname = "fcitx5-m17n"; - version = "5.0.5"; + version = "5.0.6"; src = fetchFromGitHub { owner = "fcitx"; repo = pname; rev = version; - sha256 = "sha256-duL9FgXPCr4/rMuguw8cf3EIdK6MW/alUNeh1yduY68="; + sha256 = "sha256-w806Xy7S8rhw7ZtMRzHfUD9BDzj3VmCxlP+kHMZgFpc="; }; nativeBuildInputs = [ From bf41a02953f0c4026ea2dd3ecedea3f51f0956a1 Mon Sep 17 00:00:00 2001 From: Vonfry Date: Mon, 6 Dec 2021 08:48:01 +0800 Subject: [PATCH 121/278] fcitx5-rime: 5.0.7 -> 5.0.9 --- pkgs/tools/inputmethods/fcitx5/fcitx5-rime.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/tools/inputmethods/fcitx5/fcitx5-rime.nix b/pkgs/tools/inputmethods/fcitx5/fcitx5-rime.nix index 86e5b6ca51af..f25a41306365 100644 --- a/pkgs/tools/inputmethods/fcitx5/fcitx5-rime.nix +++ b/pkgs/tools/inputmethods/fcitx5/fcitx5-rime.nix @@ -11,13 +11,13 @@ stdenv.mkDerivation rec { pname = "fcitx5-rime"; - version = "5.0.7"; + version = "5.0.9"; src = fetchFromGitHub { owner = "fcitx"; repo = pname; rev = version; - sha256 = "1djakg17rxc38smja4y76i0p4gwdj3lgwym8kybkaspk7lxr62zy"; + sha256 = "sha256-DRT4e59sMgS1xOIVx4t8I4aJGPprvRS6CYcNssIU2iY="; }; cmakeFlags = [ From 22dfb90cd9c41b3d90372c6a78edae84c0278f9e Mon Sep 17 00:00:00 2001 From: Vonfry Date: Mon, 6 Dec 2021 08:48:14 +0800 Subject: [PATCH 122/278] fcitx5-table-extra: 5.0.4 -> 5.0.7 --- pkgs/tools/inputmethods/fcitx5/fcitx5-table-extra.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/tools/inputmethods/fcitx5/fcitx5-table-extra.nix b/pkgs/tools/inputmethods/fcitx5/fcitx5-table-extra.nix index 570893c2ade4..65ad408adeba 100644 --- a/pkgs/tools/inputmethods/fcitx5/fcitx5-table-extra.nix +++ b/pkgs/tools/inputmethods/fcitx5/fcitx5-table-extra.nix @@ -10,13 +10,13 @@ stdenv.mkDerivation rec { pname = "fcitx5-table-extra"; - version = "5.0.4"; + version = "5.0.7"; src = fetchFromGitHub { owner = "fcitx"; repo = pname; rev = version; - sha256 = "1rhm9jyqxlsgjsn3f5n9jwm5qjcgg87widp0bv1xa9cc23mydrqv"; + sha256 = "sha256-K+MeFfst+vxgaHkYgLzfj7wqHYP6dIbh5ZOYHaV0cXo="; }; nativeBuildInputs = [ From 6ce45d6fb474192d05a4ee19995a487f7a13aa97 Mon Sep 17 00:00:00 2001 From: Vonfry Date: Mon, 6 Dec 2021 08:48:36 +0800 Subject: [PATCH 123/278] fcitx5-table-other: 5.0.5 -> 5.0.6 --- pkgs/tools/inputmethods/fcitx5/fcitx5-table-other.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/tools/inputmethods/fcitx5/fcitx5-table-other.nix b/pkgs/tools/inputmethods/fcitx5/fcitx5-table-other.nix index 00e13bc756fa..b6ba9bfd1632 100644 --- a/pkgs/tools/inputmethods/fcitx5/fcitx5-table-other.nix +++ b/pkgs/tools/inputmethods/fcitx5/fcitx5-table-other.nix @@ -10,13 +10,13 @@ stdenv.mkDerivation rec { pname = "fcitx5-table-other"; - version = "5.0.5"; + version = "5.0.6"; src = fetchFromGitHub { owner = "fcitx"; repo = pname; rev = version; - sha256 = "0z34y05sbb2qavpa6banv7xvlsmpymmm828265r8bf7r995wx8lz"; + sha256 = "sha256-NePb2tDy8mSR+cPxhOF4xBnxFRjLKdNs8YNGlvfFKmg="; }; nativeBuildInputs = [ From fd354779e3e7fe9a876df48a9ac065f53a4de9cc Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Tue, 7 Dec 2021 14:37:34 +0000 Subject: [PATCH 124/278] mednaffe: 0.9.1 -> 0.9.2 --- pkgs/misc/emulators/mednaffe/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/misc/emulators/mednaffe/default.nix b/pkgs/misc/emulators/mednaffe/default.nix index 8a11b633d28e..e92836ae34d5 100644 --- a/pkgs/misc/emulators/mednaffe/default.nix +++ b/pkgs/misc/emulators/mednaffe/default.nix @@ -11,13 +11,13 @@ stdenv.mkDerivation rec { pname = "mednaffe"; - version = "0.9.1"; + version = "0.9.2"; src = fetchFromGitHub { owner = "AmatCoder"; repo = "mednaffe"; rev = version; - sha256 = "sha256-YU8PHnQHAsY90LN/WDugi4WhsuZGBj/z3BS4o69qMS4="; + sha256 = "sha256-zvSAt6CMcgdoPpTTA5sPlQaWUw9LUMsR2Xg9jM2UaWY="; }; nativeBuildInputs = [ autoreconfHook pkg-config wrapGAppsHook ]; From 48dc356d6d26445d4fa095a5722e9cfaf1874902 Mon Sep 17 00:00:00 2001 From: Fabian Affolter Date: Tue, 7 Dec 2021 17:17:21 +0100 Subject: [PATCH 125/278] dnstwist: 20201228 -> 20211204 --- pkgs/tools/networking/dnstwist/default.nix | 10 ++++++---- 1 file changed, 6 insertions(+), 4 deletions(-) diff --git a/pkgs/tools/networking/dnstwist/default.nix b/pkgs/tools/networking/dnstwist/default.nix index e19b4dabd78b..034b69d2ecd7 100644 --- a/pkgs/tools/networking/dnstwist/default.nix +++ b/pkgs/tools/networking/dnstwist/default.nix @@ -5,14 +5,13 @@ python3.pkgs.buildPythonApplication rec { pname = "dnstwist"; - version = "20201228"; - disabled = python3.pythonOlder "3.6"; + version = "20211204"; src = fetchFromGitHub { owner = "elceef"; repo = pname; rev = version; - sha256 = "0bxshi1p0va2f449v6vsm8bav5caa3r3pyknj3zf4n5rvk6say70"; + sha256 = "sha256-D7qesxkJMx/N0oyaw3ev007SLCm4RKhZSNW22CNgKPw="; }; propagatedBuildInputs = with python3.pkgs; [ @@ -26,7 +25,10 @@ python3.pkgs.buildPythonApplication rec { # Project has no tests doCheck = false; - pythonImportsCheck = [ "dnstwist" ]; + + pythonImportsCheck = [ + "dnstwist" + ]; meta = with lib; { description = "Domain name permutation engine for detecting homograph phishing attacks"; From cfcbea7a3f8fcb8c80ff4f1760e71ff0b2d136f2 Mon Sep 17 00:00:00 2001 From: Fabian Affolter Date: Tue, 7 Dec 2021 17:28:05 +0100 Subject: [PATCH 126/278] nuclei: 2.5.3 -> 2.5.4 --- pkgs/tools/security/nuclei/default.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/tools/security/nuclei/default.nix b/pkgs/tools/security/nuclei/default.nix index a9785cde190b..396b8e03792c 100644 --- a/pkgs/tools/security/nuclei/default.nix +++ b/pkgs/tools/security/nuclei/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "nuclei"; - version = "2.5.3"; + version = "2.5.4"; src = fetchFromGitHub { owner = "projectdiscovery"; repo = pname; rev = "v${version}"; - sha256 = "sha256-LcOErqnjnBjC2OKObI1r4ydJ2mes2j6WdQpyHi0rLoU="; + sha256 = "sha256-r6nOVTg/vZr2somTCoEJQHtbMMZ1RCkdDzGQeTISreU="; }; - vendorSha256 = "sha256-lC88sV/WGZuiFZhXNdmMhDyrBdCxbspvpl8JPBS4in4="; + vendorSha256 = "sha256-/TFg+ztubfZfyUbRabVr943oF9R0Xg8mIDxUl/MFbJE="; modRoot = "./v2"; subPackages = [ From cab9136841e230e7d1415236ad62a31aee3ecb7e Mon Sep 17 00:00:00 2001 From: Zane van Iperen Date: Wed, 8 Dec 2021 02:34:16 +1000 Subject: [PATCH 127/278] fakeroute: change upstream Original upstream has been purged, switch to a mirror. See https://github.com/NixOS/nixpkgs/issues/149201 for details. --- pkgs/tools/networking/fakeroute/default.nix | 12 ++++++++---- 1 file changed, 8 insertions(+), 4 deletions(-) diff --git a/pkgs/tools/networking/fakeroute/default.nix b/pkgs/tools/networking/fakeroute/default.nix index 025eef72332f..6e5fbdb13d28 100644 --- a/pkgs/tools/networking/fakeroute/default.nix +++ b/pkgs/tools/networking/fakeroute/default.nix @@ -1,14 +1,18 @@ -{ lib, stdenv, fetchurl }: +{ lib, stdenv, fetchFromGitHub }: stdenv.mkDerivation rec { pname = "fakeroute"; version = "0.3"; - src = fetchurl { - url = "https://moxie.org/software/fakeroute/${pname}-${version}.tar.gz"; - sha256 = "1sp342rxgm1gz4mvi5vvz1knz7kn9px9s39ii3jdjp4ks7lr5c8f"; + src = fetchFromGitHub { + owner = "museoa"; + repo = "fakeroute"; + rev = "f8cb9c0ae3abb4c0662d9e1fcac67eefeeac3963"; + sha256 = "12dhahwlpjzv79wpdpryjihamfbh4d8cfzfw4wi1jkl0dv2d41jg"; }; + sourceRoot = "source/fakeroute-0.3"; + meta = with lib; { description = '' Makes your machine appear to be anywhere on the internet From 8f7f6fbf91da5a7ba9fa527896c1a12a0f09a768 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Tue, 7 Dec 2021 16:45:28 +0000 Subject: [PATCH 128/278] navi: 2.17.0 -> 2.18.0 --- pkgs/applications/misc/navi/default.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/applications/misc/navi/default.nix b/pkgs/applications/misc/navi/default.nix index 04fe08e1f386..2075f96285b3 100644 --- a/pkgs/applications/misc/navi/default.nix +++ b/pkgs/applications/misc/navi/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "navi"; - version = "2.17.0"; + version = "2.18.0"; src = fetchFromGitHub { owner = "denisidoro"; repo = "navi"; rev = "v${version}"; - sha256 = "sha256-WH8FfQ7cD4aFUi9iE0tR/B+5oWy8tMVmMLxusDwXF7w="; + sha256 = "sha256-JG0MZrvpx+cAFcZJK05GUI10PG53UmxjJjveAZA7k/M="; }; - cargoSha256 = "sha256-TH9DNCoUVqH5g05Z4Vdv7F8CCLnaYezupI5FeJhYTaQ="; + cargoSha256 = "sha256-S2DBzeir6+JS1jfVxCQ68v4Rl7UBpghbtE+wdu341xw="; nativeBuildInputs = [ makeWrapper ]; From e8e83be0a042f4b99f7b8ad4ee3e70c35e6164a1 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Tue, 7 Dec 2021 17:03:32 +0000 Subject: [PATCH 129/278] netease-music-tui: 0.1.3 -> 0.1.4 --- pkgs/applications/audio/netease-music-tui/default.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/applications/audio/netease-music-tui/default.nix b/pkgs/applications/audio/netease-music-tui/default.nix index bf7d680ff157..f6ccee3e535e 100644 --- a/pkgs/applications/audio/netease-music-tui/default.nix +++ b/pkgs/applications/audio/netease-music-tui/default.nix @@ -2,13 +2,13 @@ rustPlatform.buildRustPackage rec { pname = "netease-music-tui"; - version = "0.1.3"; + version = "0.1.4"; src = fetchFromGitHub { owner = "betta-cyber"; repo = "netease-music-tui"; rev = "v${version}"; - sha256 = "09355a6d197ckayh9833y39dsarklgpgrq3raapiv25z59di30qq"; + sha256 = "sha256-ILJkejRKG2DRXgR6O2tAFbrbd8HtnLZJmITq7hF41DQ="; }; cargoPatches = [ ./cargo-lock.patch ]; @@ -16,7 +16,7 @@ rustPlatform.buildRustPackage rec { nativeBuildInputs = [ pkg-config ]; buildInputs = [ alsa-lib openssl ]; - cargoSha256 = "1pca0sz4rz8qls6k2vhf70ixhnvgk81c4hbx81q3pv106g5k205f"; + cargoSha256 = "sha256-/JQDUtSSkuO9nrYVSkQOaZjps1BUuH8Bc1SMyDSSJS4="; meta = with lib; { homepage = "https://github.com/betta-cyber/netease-music-tui"; From 82b8a4a185c0058ea1d3b8b1245e3b4ed514a845 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Tue, 7 Dec 2021 17:17:39 +0000 Subject: [PATCH 130/278] nfpm: 2.7.1 -> 2.10.0 --- pkgs/tools/package-management/nfpm/default.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/tools/package-management/nfpm/default.nix b/pkgs/tools/package-management/nfpm/default.nix index 6f30a76bcd98..777aadfa96de 100644 --- a/pkgs/tools/package-management/nfpm/default.nix +++ b/pkgs/tools/package-management/nfpm/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "nfpm"; - version = "2.7.1"; + version = "2.10.0"; src = fetchFromGitHub { owner = "goreleaser"; repo = pname; rev = "v${version}"; - sha256 = "sha256-GKX+5N8BPm4VmI10mzPJORjwLpuOLLjO+Q+RNelKUVI="; + sha256 = "sha256-ZLlTcybBoLfiSWb0DKn+U+S/LbekZvTRyDV6b1q9FDU="; }; - vendorSha256 = "sha256-NPMJ5sCdbfDraRoK5fSdaxMpYS2i8ir0cklGDoHNLAY="; + vendorSha256 = "sha256-uGpMOKqNgGOtgLU9ztg3GmR4FYBaldgZf6BZWxn08W8="; doCheck = false; From 4cba5de303728803089b67c4b423dbf7c64983ac Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Janne=20He=C3=9F?= Date: Tue, 7 Dec 2021 18:36:01 +0100 Subject: [PATCH 131/278] nixos/hoogle: Type the last option --- nixos/modules/services/development/hoogle.nix | 1 + 1 file changed, 1 insertion(+) diff --git a/nixos/modules/services/development/hoogle.nix b/nixos/modules/services/development/hoogle.nix index 7c635f7a5b8d..7c2a1c8e1624 100644 --- a/nixos/modules/services/development/hoogle.nix +++ b/nixos/modules/services/development/hoogle.nix @@ -40,6 +40,7 @@ in { haskellPackages = mkOption { description = "Which haskell package set to use."; + type = types.attrs; default = pkgs.haskellPackages; defaultText = literalExpression "pkgs.haskellPackages"; }; From 5015aeab6fc233301e0dfb60fa9f2b263a55e97d Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Janne=20He=C3=9F?= Date: Tue, 7 Dec 2021 18:36:11 +0100 Subject: [PATCH 132/278] nixos/xmonad: Type the last option --- nixos/modules/services/x11/window-managers/xmonad.nix | 2 ++ 1 file changed, 2 insertions(+) diff --git a/nixos/modules/services/x11/window-managers/xmonad.nix b/nixos/modules/services/x11/window-managers/xmonad.nix index a8f38046137a..ecad411ff683 100644 --- a/nixos/modules/services/x11/window-managers/xmonad.nix +++ b/nixos/modules/services/x11/window-managers/xmonad.nix @@ -39,10 +39,12 @@ in { options = { services.xserver.windowManager.xmonad = { enable = mkEnableOption "xmonad"; + haskellPackages = mkOption { default = pkgs.haskellPackages; defaultText = literalExpression "pkgs.haskellPackages"; example = literalExpression "pkgs.haskell.packages.ghc784"; + type = types.attrs; description = '' haskellPackages used to build Xmonad and other packages. This can be used to change the GHC version used to build From e14d34f80fa6adc87a686d830df5ca215f9b856f Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Janne=20He=C3=9F?= Date: Tue, 7 Dec 2021 18:53:18 +0100 Subject: [PATCH 133/278] nixos/dysnomia: Type all options --- nixos/modules/services/misc/dysnomia.nix | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/nixos/modules/services/misc/dysnomia.nix b/nixos/modules/services/misc/dysnomia.nix index 333ba651cde2..7d9c39a69737 100644 --- a/nixos/modules/services/misc/dysnomia.nix +++ b/nixos/modules/services/misc/dysnomia.nix @@ -104,31 +104,37 @@ in properties = mkOption { description = "An attribute set in which each attribute represents a machine property. Optionally, these values can be shell substitutions."; default = {}; + type = types.attrs; }; containers = mkOption { description = "An attribute set in which each key represents a container and each value an attribute set providing its configuration properties"; default = {}; + type = types.attrsOf types.attrs; }; components = mkOption { description = "An atttribute set in which each key represents a container and each value an attribute set in which each key represents a component and each value a derivation constructing its initial state"; default = {}; + type = types.attrsOf types.attrs; }; extraContainerProperties = mkOption { description = "An attribute set providing additional container settings in addition to the default properties"; default = {}; + type = types.attrs; }; extraContainerPaths = mkOption { description = "A list of paths containing additional container configurations that are added to the search folders"; default = []; + type = types.listOf types.path; }; extraModulePaths = mkOption { description = "A list of paths containing additional modules that are added to the search folders"; default = []; + type = types.listOf types.path; }; enableLegacyModules = mkOption { From 92decf627814c7030621e03589dc3931020e00ab Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Tue, 7 Dec 2021 18:51:12 +0000 Subject: [PATCH 134/278] oatpp: 1.2.5 -> 1.3.0 --- pkgs/development/libraries/oatpp/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/libraries/oatpp/default.nix b/pkgs/development/libraries/oatpp/default.nix index e9f92a31f2c5..3f554807d0d3 100644 --- a/pkgs/development/libraries/oatpp/default.nix +++ b/pkgs/development/libraries/oatpp/default.nix @@ -5,13 +5,13 @@ stdenv.mkDerivation rec { pname = "oatpp"; - version = "1.2.5"; + version = "1.3.0"; src = fetchFromGitHub { owner = "oatpp"; repo = "oatpp"; rev = version; - sha256 = "sha256-Vtdz03scx0hvY1yeM7yfSxCVKzi84OQ1Oh9b922movE="; + sha256 = "sha256-k6RPg53z9iTrrKZXOm5Ga9qxI32mHgB+4d6y+IUvJC0="; }; nativeBuildInputs = [ cmake ]; From 46c88e2c58bcca1911cdf66acbb6d7a77b76ced5 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Tue, 7 Dec 2021 19:02:26 +0000 Subject: [PATCH 135/278] odpic: 4.2.1 -> 4.3.0 --- pkgs/development/libraries/odpic/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/libraries/odpic/default.nix b/pkgs/development/libraries/odpic/default.nix index 9e4b01ef172c..b9095f214814 100644 --- a/pkgs/development/libraries/odpic/default.nix +++ b/pkgs/development/libraries/odpic/default.nix @@ -1,7 +1,7 @@ { lib, stdenv, fetchFromGitHub, fixDarwinDylibNames, oracle-instantclient, libaio }: let - version = "4.2.1"; + version = "4.3.0"; libPath = lib.makeLibraryPath [ oracle-instantclient.lib ]; in stdenv.mkDerivation { @@ -13,7 +13,7 @@ in stdenv.mkDerivation { owner = "oracle"; repo = "odpi"; rev = "v${version}"; - sha256 = "sha256-jdDMG6+bvsKQkHSpUrwtwU/ngq1iINcUhWu2b9lJgPY="; + sha256 = "sha256-oL2yehjP8JJxU19VY4e/ueh2xjo1yp4X7FGslqCXO8A="; }; nativeBuildInputs = lib.optional stdenv.isDarwin fixDarwinDylibNames; From 3112fe2acedf3fa88c0c673661c82442a1cb2b46 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Tue, 7 Dec 2021 20:17:43 +0000 Subject: [PATCH 136/278] openmvg: 1.6 -> 2.0 --- pkgs/applications/science/misc/openmvg/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/applications/science/misc/openmvg/default.nix b/pkgs/applications/science/misc/openmvg/default.nix index 2e34f2d15d25..585c5ac4f398 100644 --- a/pkgs/applications/science/misc/openmvg/default.nix +++ b/pkgs/applications/science/misc/openmvg/default.nix @@ -8,14 +8,14 @@ , enableDocs ? false }: stdenv.mkDerivation rec { - version = "1.6"; + version = "2.0"; pname = "openmvg"; src = fetchFromGitHub { owner = "openmvg"; repo = "openmvg"; rev = "v${version}"; - sha256 = "0mrsi0dzgi7cjzn13r9xv7rnc8c9a4h8ip78xy88m9xsyr21wd1h"; + sha256 = "sha256-6F/xUgZpqY+v6CpwTBhIXI4JdT8HVB0P5JzOL66AVd8="; fetchSubmodules = true; }; From 252d59279197f8b62b57a543d624ae4546663467 Mon Sep 17 00:00:00 2001 From: Smitty Date: Tue, 7 Dec 2021 15:40:14 -0500 Subject: [PATCH 137/278] oxipng: 5.0.0 -> 5.0.1 https://github.com/shssoichiro/oxipng/releases/tag/v5.0.1 --- pkgs/tools/graphics/oxipng/default.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/tools/graphics/oxipng/default.nix b/pkgs/tools/graphics/oxipng/default.nix index eab3996811ef..d081b7eee816 100644 --- a/pkgs/tools/graphics/oxipng/default.nix +++ b/pkgs/tools/graphics/oxipng/default.nix @@ -1,15 +1,15 @@ { lib, stdenv, fetchCrate, rustPlatform }: rustPlatform.buildRustPackage rec { - version = "5.0.0"; + version = "5.0.1"; pname = "oxipng"; src = fetchCrate { inherit version pname; - sha256 = "sha256-rTAY+3ViPkOsRjT9FHKnVOEGfLscuBdMAiQq+N9PRNU="; + sha256 = "1g2m6ifmppgq086w3vzdsihnba4qrzmnf5k13bgah2qasnl97qfh"; }; - cargoSha256 = "sha256-Z5tA2bUE/5qGKXP2hIKo6tBegaSUALRzEZ/Xext3EWY="; + cargoSha256 = "1dkfplmi21wgks8pfxxc3kww89i9wq7fq5j7jm7a8zi59p3xdars"; doCheck = !stdenv.isAarch64 && !stdenv.isDarwin; From 98faa6e57471e2309ac3e2731fce1afd7a168258 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Robert=20Sch=C3=BCtz?= Date: Tue, 7 Dec 2021 13:01:43 -0800 Subject: [PATCH 138/278] gnome-passwordsafe: 5.0 -> 5.1 --- pkgs/applications/misc/gnome-passwordsafe/default.nix | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/pkgs/applications/misc/gnome-passwordsafe/default.nix b/pkgs/applications/misc/gnome-passwordsafe/default.nix index 34f4aa71a38a..e7a413e63b46 100644 --- a/pkgs/applications/misc/gnome-passwordsafe/default.nix +++ b/pkgs/applications/misc/gnome-passwordsafe/default.nix @@ -17,16 +17,16 @@ python3Packages.buildPythonApplication rec { pname = "gnome-passwordsafe"; - version = "5.0"; + version = "5.1"; format = "other"; strictDeps = false; # https://github.com/NixOS/nixpkgs/issues/56943 src = fetchFromGitLab { domain = "gitlab.gnome.org"; owner = "World"; - repo = "PasswordSafe"; + repo = "secrets"; rev = version; - sha256 = "8EFKLNK7rZlYL2g/7FmaC5r5hcdblsnod/aB8NYiBvY="; + sha256 = "sha256-RgpkLoqhwCdaPZxC1Qe0MpLtYLevNCOxbvwEEI0cpE0="; }; nativeBuildInputs = [ @@ -58,7 +58,7 @@ python3Packages.buildPythonApplication rec { meta = with lib; { broken = stdenv.hostPlatform.isStatic; # libpwquality doesn't provide bindings when static description = "Password manager for GNOME which makes use of the KeePass v.4 format"; - homepage = "https://gitlab.gnome.org/World/PasswordSafe"; + homepage = "https://gitlab.gnome.org/World/secrets"; license = licenses.gpl3Only; platforms = platforms.linux; maintainers = with maintainers; [ mvnetbiz ]; From e5cb762963ff8f645bbcd2cb019fa60e167d7ee4 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Tue, 7 Dec 2021 22:30:34 +0000 Subject: [PATCH 139/278] opentelemetry-collector: 0.38.0 -> 0.40.0 --- pkgs/tools/misc/opentelemetry-collector/default.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/tools/misc/opentelemetry-collector/default.nix b/pkgs/tools/misc/opentelemetry-collector/default.nix index 27dc4ee6d5c9..6c83d72976d9 100644 --- a/pkgs/tools/misc/opentelemetry-collector/default.nix +++ b/pkgs/tools/misc/opentelemetry-collector/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "opentelemetry-collector"; - version = "0.38.0"; + version = "0.40.0"; src = fetchFromGitHub { owner = "open-telemetry"; repo = "opentelemetry-collector-contrib"; rev = "v${version}"; - sha256 = "1sgzz7p19vy7grvq1qrfgf5rw3yjnidcsdsky2l2g98i54md25ml"; + sha256 = "sha256-YFgAS4WReyMnzb6FOeRUXHf1LUgknH5gWObiZNKMbv8="; }; - vendorSha256 = "1p9i01lwz7yidlmcri3pndmg8brgdrd0ai8sag9xn021hw2sn6qq"; + vendorSha256 = "sha256-DTZLYF3BoQGou59KaL56pkxySsoQ0xeJ5aF/SkewziE="; proxyVendor = true; CGO_ENABLED = 0; From 0bd5c9c7c7a56851e2c5596f1474cbbcfeb51ea4 Mon Sep 17 00:00:00 2001 From: Fabian Affolter Date: Wed, 8 Dec 2021 00:05:50 +0100 Subject: [PATCH 140/278] tfsec: 0.61.3 -> 0.63.1 --- pkgs/development/tools/analysis/tfsec/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/tools/analysis/tfsec/default.nix b/pkgs/development/tools/analysis/tfsec/default.nix index 9bd7a4c8daf4..75d1b3035ee3 100644 --- a/pkgs/development/tools/analysis/tfsec/default.nix +++ b/pkgs/development/tools/analysis/tfsec/default.nix @@ -5,13 +5,13 @@ buildGoPackage rec { pname = "tfsec"; - version = "0.61.3"; + version = "0.63.1"; src = fetchFromGitHub { owner = "aquasecurity"; repo = pname; rev = "v${version}"; - sha256 = "sha256-hMLUdUZz7IUTldiJQLKwq0AJdpQqTTzuorfzaUR+ao8="; + sha256 = "sha256-khAVb+uwr3qyAWjvMjPG//+FKQJ9qoVwmhsej++IQhs="; }; goPackagePath = "github.com/aquasecurity/tfsec"; From 7a4c308c6cd976211eb3c9202e64464f38828eaa Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Tue, 7 Dec 2021 23:14:37 +0000 Subject: [PATCH 141/278] otpclient: 2.4.4 -> 2.4.7 --- pkgs/applications/misc/otpclient/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/applications/misc/otpclient/default.nix b/pkgs/applications/misc/otpclient/default.nix index b15eb1a78b42..364bb6c80deb 100644 --- a/pkgs/applications/misc/otpclient/default.nix +++ b/pkgs/applications/misc/otpclient/default.nix @@ -15,13 +15,13 @@ stdenv.mkDerivation rec { pname = "otpclient"; - version = "2.4.4"; + version = "2.4.7"; src = fetchFromGitHub { owner = "paolostivanin"; repo = pname; rev = "v${version}"; - sha256 = "0zjvhcx9q8nsf97zikddxriky0kghi4j4i7312s94pl8c7kb4abr"; + sha256 = "sha256-UR7h+btmOSnpjkrQMiABcM1tOFjOhNVWuKYDF9qXfFo="; }; buildInputs = [ gtk3 jansson libgcrypt libzip libpng libcotp zbar ]; From 4d9b81510548101e74d8c693e32e0ea59987f45c Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Tue, 7 Dec 2021 23:31:48 +0000 Subject: [PATCH 142/278] papirus-icon-theme: 20211001 -> 20211201 --- pkgs/data/icons/papirus-icon-theme/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/data/icons/papirus-icon-theme/default.nix b/pkgs/data/icons/papirus-icon-theme/default.nix index 9e8856528b10..503e4e1d296a 100644 --- a/pkgs/data/icons/papirus-icon-theme/default.nix +++ b/pkgs/data/icons/papirus-icon-theme/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "papirus-icon-theme"; - version = "20211001"; + version = "20211201"; src = fetchFromGitHub { owner = "PapirusDevelopmentTeam"; repo = pname; rev = version; - sha256 = "sha256-OVG/bKWOdSxOXVvtMOITnCDoGNSc+zPNZ/XOablfSEE="; + sha256 = "sha256-lcwQALFQ4zkgDLCX1uthAP3QZwP7UcWcPSOU+UTDykE="; }; nativeBuildInputs = [ gtk3 ]; From 3ffb1e60e585477ea6b8eae20363aebc46ea49cb Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 00:05:59 +0000 Subject: [PATCH 143/278] pdfcpu: 0.3.12 -> 0.3.13 --- pkgs/applications/graphics/pdfcpu/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/applications/graphics/pdfcpu/default.nix b/pkgs/applications/graphics/pdfcpu/default.nix index d30437c93184..29cbbf257ac3 100644 --- a/pkgs/applications/graphics/pdfcpu/default.nix +++ b/pkgs/applications/graphics/pdfcpu/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "pdfcpu"; - version = "0.3.12"; + version = "0.3.13"; src = fetchFromGitHub { owner = "pdfcpu"; repo = pname; rev = "v${version}"; - sha256 = "sha256-Ts4FJWUeWHVfeBEetgACYMGEsDLHm5JOEEn7EtQduPU="; + sha256 = "sha256-CFKo8YEAXAniX+jL2A0naJUOn3KAWwcrPsabdiZevhI="; }; vendorSha256 = "sha256-p/2Bu5h2P3ebgvSC12jdR2Zpd27xCFwtB/KZV0AULAM="; From d124987587a6d0688f74c62a76a351c257df6beb Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 00:09:34 +0000 Subject: [PATCH 144/278] qbe: unstable-2021-11-10 -> unstable-2021-11-22 --- pkgs/development/compilers/qbe/default.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/development/compilers/qbe/default.nix b/pkgs/development/compilers/qbe/default.nix index fd6dea1cb1d5..1751da3e8f30 100644 --- a/pkgs/development/compilers/qbe/default.nix +++ b/pkgs/development/compilers/qbe/default.nix @@ -6,12 +6,12 @@ stdenv.mkDerivation rec { pname = "qbe"; - version = "unstable-2021-11-10"; + version = "unstable-2021-11-22"; src = fetchgit { url = "git://c9x.me/qbe.git"; - rev = "b0f16dad64d14f36ffe235b2e9cca96aa3ce35ba"; - sha256 = "sha256-oPgr8PDxGNqIWxWsvVr9B8oN0Io/pUuzgIkZfY/qD+o="; + rev = "bf153b359e9ce3ebef9bca899eb7ed5bd9045c11"; + sha256 = "sha256-13Mvq4VWZxlye/kncJibCnfSECx4PeHMYLuX0xMkN3A="; }; makeFlags = [ "PREFIX=$(out)" ]; From 89d416b670025b7ede4e4e30155fee3dba70a74f Mon Sep 17 00:00:00 2001 From: Raphael Megzari Date: Wed, 8 Dec 2021 09:11:35 +0900 Subject: [PATCH 145/278] elixir-ls: 0.8.1 -> 0.9.0 (#148671) --- .../beam-modules/elixir-ls/default.nix | 14 ++++---- .../beam-modules/elixir-ls/pin.json | 5 +++ .../beam-modules/elixir-ls/update.sh | 35 +++++++++---------- 3 files changed, 30 insertions(+), 24 deletions(-) create mode 100644 pkgs/development/beam-modules/elixir-ls/pin.json diff --git a/pkgs/development/beam-modules/elixir-ls/default.nix b/pkgs/development/beam-modules/elixir-ls/default.nix index e0a7cb4e539d..72862d5b9689 100644 --- a/pkgs/development/beam-modules/elixir-ls/default.nix +++ b/pkgs/development/beam-modules/elixir-ls/default.nix @@ -2,23 +2,25 @@ # Based on the work of Hauleth # None of this would have happened without him -mixRelease rec { +let pname = "elixir-ls"; - version = "0.8.1"; - inherit elixir; - + pinData = lib.importJSON ./pin.json; + version = pinData.version; src = fetchFromGitHub { owner = "elixir-lsp"; repo = "elixir-ls"; rev = "v${version}"; - sha256 = "sha256-KlZq12RCor9GrwA8QMP3R+jUQ/xFHRjkLwwkvthiMU0="; + sha256 = pinData.sha256; fetchSubmodules = true; }; +in +mixRelease { + inherit pname version src elixir; mixFodDeps = fetchMixDeps { pname = "mix-deps-${pname}"; inherit src version elixir; - sha256 = "sha256-OzjToAg+q/ybCyqzNFk28OBsItjFTbdPi416EPh2qX0="; + sha256 = pinData.depsSha256; }; # elixir_ls is an umbrella app diff --git a/pkgs/development/beam-modules/elixir-ls/pin.json b/pkgs/development/beam-modules/elixir-ls/pin.json new file mode 100644 index 000000000000..02b0ef8c4ae9 --- /dev/null +++ b/pkgs/development/beam-modules/elixir-ls/pin.json @@ -0,0 +1,5 @@ +{ + "version": "0.9.0", + "sha256": "sha256-dHHmA9TAM5YEfbUoujgy1XLzdh7zGWhR9SsFoTnKX48=", + "depsSha256": "sha256-YkZ/tp537ULKfXka4IdD+RgLlXuv6ayxdYn9KFyXrr4=" +} diff --git a/pkgs/development/beam-modules/elixir-ls/update.sh b/pkgs/development/beam-modules/elixir-ls/update.sh index 8bc1c2b6e966..eaa73815d735 100755 --- a/pkgs/development/beam-modules/elixir-ls/update.sh +++ b/pkgs/development/beam-modules/elixir-ls/update.sh @@ -2,31 +2,30 @@ #! nix-shell -i oil -p jq sd nix-prefetch-github ripgrep # TODO set to `verbose` or `extdebug` once implemented in oil -shopt --set xtrace +set -x -var directory = $(dirname $0 | xargs realpath) -var owner = "elixir-lsp" -var repo = "elixir-ls" -var latest_rev = $(curl -q https://api.github.com/repos/${owner}/${repo}/releases/latest | \ +const directory = $(dirname $0 | xargs realpath) +const owner = "elixir-lsp" +const repo = "elixir-ls" +const latest_rev = $(curl -q https://api.github.com/repos/${owner}/${repo}/releases/latest | \ jq -r '.tag_name') -var latest_version = $(echo $latest_rev | sd 'v' '') -var current_version = $(nix-instantiate -A elixir_ls.version --eval --json | jq -r) -if ("$latest_version" == "$current_version") { +const latest_version = $(echo $latest_rev | sd 'v' '') +const current_version = $(jq -r '.version' $directory/pin.json) +if ("$latest_version" === "$current_version") { echo "elixir-ls is already up-to-date" return 0 } else { - var tarball_meta = $(nix-prefetch-github $owner $repo --rev "$latest_rev") - var tarball_hash = "sha256-$(echo $tarball_meta | jq -r '.sha256')" - var sha256s = $(rg '"sha256-.+"' $directory/default.nix | sd '.+"(.+)";' '$1' ) - echo $sha256s | read --line :github_sha256 - echo $sha256s | tail -n 1 | read --line :old_mix_sha256 - sd 'version = ".+"' "version = \"$latest_version\"" "$directory/default.nix" - sd "sha256 = \"$github_sha256\"" "sha256 = \"$tarball_hash\"" "$directory/default.nix" - sd "sha256 = \"$old_mix_sha256\"" "sha256 = \"\"" "$directory/default.nix" + const tarball_meta = $(nix-prefetch-github $owner $repo --rev "$latest_rev") + const tarball_hash = "sha256-$(echo $tarball_meta | jq -r '.sha256')" + const sha256s = $(rg '"sha256-.+"' $directory/default.nix | sd '.+"(.+)";' '$1' ) - var new_mix_hash = $(nix-build -A elixir_ls.mixFodDeps 2>&1 | \ + jq ".version = \"$latest_version\" | \ + .\"sha256\" = \"$tarball_hash\" | \ + .\"depsSha256\" = \"\"" $directory/pin.json | sponge $directory/pin.json + + const new_mix_hash = $(nix-build -A elixir_ls.mixFodDeps 2>&1 | \ tail -n 1 | \ sd '\s+got:\s+' '') - sd "sha256 = \"\"" "sha256 = \"$new_mix_hash\"" "$directory/default.nix" + jq ".depsSha256 = \"$new_mix_hash\"" $directory/pin.json | sponge $directory/pin.json } From f4f1bfd2617cc3a69d2675efc480b42f21e1574a Mon Sep 17 00:00:00 2001 From: TredwellGit Date: Thu, 2 Dec 2021 07:52:30 +0000 Subject: [PATCH 146/278] linux: 4.14.255 -> 4.14.256 --- pkgs/os-specific/linux/kernel/linux-4.14.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/os-specific/linux/kernel/linux-4.14.nix b/pkgs/os-specific/linux/kernel/linux-4.14.nix index 2073d28f078f..7fbd38d43602 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.14.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.14.nix @@ -3,7 +3,7 @@ with lib; buildLinux (args // rec { - version = "4.14.255"; + version = "4.14.256"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "1mxjwqijnlvrdbpd973kdycz1dwklfkj9vpnj1cihgsf880q02zh"; + sha256 = "180s2zmkfxk7af9nnkmfi2cs56af6vwyd21hjcfdxiygjm7j114p"; }; } // (args.argsOverride or {})) From 0868920a423d1b80d868a07a8d15e6dfebe18ce8 Mon Sep 17 00:00:00 2001 From: TredwellGit Date: Thu, 2 Dec 2021 07:52:35 +0000 Subject: [PATCH 147/278] linux: 4.19.217 -> 4.19.219 --- pkgs/os-specific/linux/kernel/linux-4.19.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/os-specific/linux/kernel/linux-4.19.nix b/pkgs/os-specific/linux/kernel/linux-4.19.nix index 1e813076d1f9..6f6cb7527f34 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.19.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.19.nix @@ -3,7 +3,7 @@ with lib; buildLinux (args // rec { - version = "4.19.217"; + version = "4.19.219"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "01500jcjvhbkn7xcan564jw0nnwc12cf8hhvl8118jqqqw612lc5"; + sha256 = "1nq9228zm24d8azvv6d6r5iw8lfkb7z5lblyhk137mydzdqwsklg"; }; } // (args.argsOverride or {})) From cc06653c4671c017323fc2857a66f7b85cae40dd Mon Sep 17 00:00:00 2001 From: TredwellGit Date: Thu, 2 Dec 2021 07:52:39 +0000 Subject: [PATCH 148/278] linux: 4.4.292 -> 4.4.293 --- pkgs/os-specific/linux/kernel/linux-4.4.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/os-specific/linux/kernel/linux-4.4.nix b/pkgs/os-specific/linux/kernel/linux-4.4.nix index f39340b59bca..a9470ecb625f 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.4.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.4.nix @@ -1,12 +1,12 @@ { buildPackages, fetchurl, perl, buildLinux, nixosTests, stdenv, ... } @ args: buildLinux (args // rec { - version = "4.4.292"; + version = "4.4.293"; extraMeta.branch = "4.4"; extraMeta.broken = stdenv.isAarch64; src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "0v5rz8na1d458grc49x3j1951mhvxvqzjq5g9rv1hi0p9rjala97"; + sha256 = "1z9hc68v8fvph29l2w3md4734hhgp36sy8mzdlkmdrlkjihq6bvd"; }; } // (args.argsOverride or {})) From 9fc610cf3f81b46095b5f7f6bb15d622d956b44f Mon Sep 17 00:00:00 2001 From: TredwellGit Date: Thu, 2 Dec 2021 07:52:46 +0000 Subject: [PATCH 149/278] linux: 4.9.290 -> 4.9.291 --- pkgs/os-specific/linux/kernel/linux-4.9.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/os-specific/linux/kernel/linux-4.9.nix b/pkgs/os-specific/linux/kernel/linux-4.9.nix index f58f7c4a7e4d..50feb2c821ca 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.9.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.9.nix @@ -1,12 +1,12 @@ { buildPackages, fetchurl, perl, buildLinux, nixosTests, stdenv, ... } @ args: buildLinux (args // rec { - version = "4.9.290"; + version = "4.9.291"; extraMeta.branch = "4.9"; extraMeta.broken = stdenv.isAarch64; src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "1ns0xbcgv0ix4b3xkcws8g3ks1a31kzc5whmkf9arz1k8si5mpnd"; + sha256 = "0lwb9mb4s6qnwklygvfsr5ap85k83w1apkbbfdzzacfn9rvpfpdm"; }; } // (args.argsOverride or {})) From 342e0a3df9a58e0bbb13d410015cc6e5d9213ae0 Mon Sep 17 00:00:00 2001 From: TredwellGit Date: Thu, 2 Dec 2021 07:52:54 +0000 Subject: [PATCH 150/278] linux: 5.10.81 -> 5.10.83 --- pkgs/os-specific/linux/kernel/linux-5.10.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/os-specific/linux/kernel/linux-5.10.nix b/pkgs/os-specific/linux/kernel/linux-5.10.nix index d17bb34d2122..c49d248a3662 100644 --- a/pkgs/os-specific/linux/kernel/linux-5.10.nix +++ b/pkgs/os-specific/linux/kernel/linux-5.10.nix @@ -3,7 +3,7 @@ with lib; buildLinux (args // rec { - version = "5.10.81"; + version = "5.10.83"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v5.x/linux-${version}.tar.xz"; - sha256 = "1nssv94zivx08vrxxflq4dxk5fxl3azsqlnzvw58qnf469hniqd2"; + sha256 = "0w4vq8wby3m9f5ryssh6z948m6zj1bjz9x432805dnrxyd1rl9gg"; }; } // (args.argsOverride or {})) From cd32471748cc13a45272fe89beb5435c1dbf3b12 Mon Sep 17 00:00:00 2001 From: TredwellGit Date: Thu, 2 Dec 2021 07:53:00 +0000 Subject: [PATCH 151/278] linux: 5.15.4 -> 5.15.6 --- pkgs/os-specific/linux/kernel/linux-5.15.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/os-specific/linux/kernel/linux-5.15.nix b/pkgs/os-specific/linux/kernel/linux-5.15.nix index 772c47916ac6..5a6d55b94b67 100644 --- a/pkgs/os-specific/linux/kernel/linux-5.15.nix +++ b/pkgs/os-specific/linux/kernel/linux-5.15.nix @@ -3,7 +3,7 @@ with lib; buildLinux (args // rec { - version = "5.15.4"; + version = "5.15.6"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v5.x/linux-${version}.tar.xz"; - sha256 = "1jnbk7mb3s5xc0a23qd07n28dls9y94cdv2bdy71bxk5bsvhz7al"; + sha256 = "1w0plw9rzk2c0g8yxzwj7c6wkq538sy56mx1skmf58wrl83bmsdk"; }; } // (args.argsOverride or { })) From 8a260ea0f34ae72296890a664662a11a551cc0ab Mon Sep 17 00:00:00 2001 From: TredwellGit Date: Thu, 2 Dec 2021 07:53:07 +0000 Subject: [PATCH 152/278] linux: 5.4.161 -> 5.4.163 --- pkgs/os-specific/linux/kernel/linux-5.4.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/os-specific/linux/kernel/linux-5.4.nix b/pkgs/os-specific/linux/kernel/linux-5.4.nix index a9063da41b82..d0ba457959dc 100644 --- a/pkgs/os-specific/linux/kernel/linux-5.4.nix +++ b/pkgs/os-specific/linux/kernel/linux-5.4.nix @@ -3,7 +3,7 @@ with lib; buildLinux (args // rec { - version = "5.4.161"; + version = "5.4.163"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v5.x/linux-${version}.tar.xz"; - sha256 = "19rrz7fzka506bpgy229v1sbaxc2s609ldmxc2522y9h5aswcj9i"; + sha256 = "1glh0azkrqdwydvbz9rp3czc5ppb72gq7svl3zbkjc6qfqbzwik2"; }; } // (args.argsOverride or {})) From 962956db9699f00c4ab9337452275bc98c395ba0 Mon Sep 17 00:00:00 2001 From: TredwellGit Date: Thu, 2 Dec 2021 08:05:04 +0000 Subject: [PATCH 153/278] linux-rt_5_10: 5.10.78-rt55 -> 5.10.78-rt56 --- pkgs/os-specific/linux/kernel/linux-rt-5.10.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/os-specific/linux/kernel/linux-rt-5.10.nix b/pkgs/os-specific/linux/kernel/linux-rt-5.10.nix index c8d42ddda746..db5b6bb3b6bb 100644 --- a/pkgs/os-specific/linux/kernel/linux-rt-5.10.nix +++ b/pkgs/os-specific/linux/kernel/linux-rt-5.10.nix @@ -6,7 +6,7 @@ , ... } @ args: let - version = "5.10.78-rt55"; # updated by ./update-rt.sh + version = "5.10.78-rt56"; # updated by ./update-rt.sh branch = lib.versions.majorMinor version; kversion = builtins.elemAt (lib.splitString "-" version) 0; in buildLinux (args // { @@ -25,7 +25,7 @@ in buildLinux (args // { name = "rt"; patch = fetchurl { url = "mirror://kernel/linux/kernel/projects/rt/${branch}/older/patch-${version}.patch.xz"; - sha256 = "1wcw682r238qi5jgn5zk9m6j2506p9ypfax13bzhjfyjzz3h98kp"; + sha256 = "0fg627hd0yq2cnbli2v795qfdwhgqqyzmxrq03vyqwg8471kdqzb"; }; }; in [ rt-patch ] ++ kernelPatches; From b4a903e20d988053c18987d9250fcdd4d5a162f0 Mon Sep 17 00:00:00 2001 From: TredwellGit Date: Thu, 2 Dec 2021 08:05:48 +0000 Subject: [PATCH 154/278] linux-rt_5_4: 5.4.154-rt65 -> 5.4.161-rt66 --- pkgs/os-specific/linux/kernel/linux-rt-5.4.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/os-specific/linux/kernel/linux-rt-5.4.nix b/pkgs/os-specific/linux/kernel/linux-rt-5.4.nix index c299cd2a27d7..c80a6b3c3bcd 100644 --- a/pkgs/os-specific/linux/kernel/linux-rt-5.4.nix +++ b/pkgs/os-specific/linux/kernel/linux-rt-5.4.nix @@ -6,7 +6,7 @@ , ... } @ args: let - version = "5.4.154-rt65"; # updated by ./update-rt.sh + version = "5.4.161-rt66"; # updated by ./update-rt.sh branch = lib.versions.majorMinor version; kversion = builtins.elemAt (lib.splitString "-" version) 0; in buildLinux (args // { @@ -14,14 +14,14 @@ in buildLinux (args // { src = fetchurl { url = "mirror://kernel/linux/kernel/v5.x/linux-${kversion}.tar.xz"; - sha256 = "01iwbz1ncakw90yykdw3cx04wnclwf1qa8nmlis08svbcvs99285"; + sha256 = "19rrz7fzka506bpgy229v1sbaxc2s609ldmxc2522y9h5aswcj9i"; }; kernelPatches = let rt-patch = { name = "rt"; patch = fetchurl { url = "mirror://kernel/linux/kernel/projects/rt/${branch}/older/patch-${version}.patch.xz"; - sha256 = "0vbcmwg91hzcxiwq9dj550bw24k8r7lk61j06nwcnwmjg9a3g449"; + sha256 = "1prjfvymk4zp94vlgp3nqf1k184blx14kakpikbnk8nck5p9z02m"; }; }; in [ rt-patch ] ++ kernelPatches; From d2bfac4ff97145d24160d894fa87c759eaae1ac1 Mon Sep 17 00:00:00 2001 From: TredwellGit Date: Thu, 2 Dec 2021 08:06:29 +0000 Subject: [PATCH 155/278] linux/hardened/patches/4.14: 4.14.255-hardened1 -> 4.14.256-hardened1 --- pkgs/os-specific/linux/kernel/hardened/patches.json | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/pkgs/os-specific/linux/kernel/hardened/patches.json b/pkgs/os-specific/linux/kernel/hardened/patches.json index e7541e040496..d9c09b3d2c2a 100644 --- a/pkgs/os-specific/linux/kernel/hardened/patches.json +++ b/pkgs/os-specific/linux/kernel/hardened/patches.json @@ -2,12 +2,12 @@ "4.14": { "patch": { "extra": "-hardened1", - "name": "linux-hardened-4.14.255-hardened1.patch", - "sha256": "0d84jwf9vd86qzxq8aqcyrzmwczf3qh2f7a801qsgzb96fyvakrl", - "url": "https://github.com/anthraxx/linux-hardened/releases/download/4.14.255-hardened1/linux-hardened-4.14.255-hardened1.patch" + "name": "linux-hardened-4.14.256-hardened1.patch", + "sha256": "0dxp40jq9xwrc8v81yyiy6vachqdwlviws152yzinh0k3j4s1c3g", + "url": "https://github.com/anthraxx/linux-hardened/releases/download/4.14.256-hardened1/linux-hardened-4.14.256-hardened1.patch" }, - "sha256": "1mxjwqijnlvrdbpd973kdycz1dwklfkj9vpnj1cihgsf880q02zh", - "version": "4.14.255" + "sha256": "180s2zmkfxk7af9nnkmfi2cs56af6vwyd21hjcfdxiygjm7j114p", + "version": "4.14.256" }, "4.19": { "patch": { From cfd35502f63fb2888b72cf4dbdcb4ff6d15dbdd7 Mon Sep 17 00:00:00 2001 From: TredwellGit Date: Thu, 2 Dec 2021 08:06:36 +0000 Subject: [PATCH 156/278] linux/hardened/patches/4.19: 4.19.217-hardened1 -> 4.19.219-hardened1 --- pkgs/os-specific/linux/kernel/hardened/patches.json | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/pkgs/os-specific/linux/kernel/hardened/patches.json b/pkgs/os-specific/linux/kernel/hardened/patches.json index d9c09b3d2c2a..b9711895c76c 100644 --- a/pkgs/os-specific/linux/kernel/hardened/patches.json +++ b/pkgs/os-specific/linux/kernel/hardened/patches.json @@ -12,12 +12,12 @@ "4.19": { "patch": { "extra": "-hardened1", - "name": "linux-hardened-4.19.217-hardened1.patch", - "sha256": "1brx4dvh8acq1r5mbh2a5d95k3n7m4x3jnqnp0s69p3fx9gf1kxh", - "url": "https://github.com/anthraxx/linux-hardened/releases/download/4.19.217-hardened1/linux-hardened-4.19.217-hardened1.patch" + "name": "linux-hardened-4.19.219-hardened1.patch", + "sha256": "0447km2z1ww6yzixln1a3b7ymrj3ymxag7ny1d60d0d5064id6vj", + "url": "https://github.com/anthraxx/linux-hardened/releases/download/4.19.219-hardened1/linux-hardened-4.19.219-hardened1.patch" }, - "sha256": "01500jcjvhbkn7xcan564jw0nnwc12cf8hhvl8118jqqqw612lc5", - "version": "4.19.217" + "sha256": "1nq9228zm24d8azvv6d6r5iw8lfkb7z5lblyhk137mydzdqwsklg", + "version": "4.19.219" }, "5.10": { "patch": { From 55969e856cf58e251ef0a73a9d58f362f88f2aff Mon Sep 17 00:00:00 2001 From: TredwellGit Date: Thu, 2 Dec 2021 08:06:43 +0000 Subject: [PATCH 157/278] linux/hardened/patches/5.10: 5.10.80-hardened1 -> 5.10.83-hardened1 --- pkgs/os-specific/linux/kernel/hardened/patches.json | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/pkgs/os-specific/linux/kernel/hardened/patches.json b/pkgs/os-specific/linux/kernel/hardened/patches.json index b9711895c76c..a314b32be86e 100644 --- a/pkgs/os-specific/linux/kernel/hardened/patches.json +++ b/pkgs/os-specific/linux/kernel/hardened/patches.json @@ -22,12 +22,12 @@ "5.10": { "patch": { "extra": "-hardened1", - "name": "linux-hardened-5.10.80-hardened1.patch", - "sha256": "1srm1kwh1fhc1rm7hwwyki48x1b4nq2zishscamsb82drnwl5pbs", - "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.10.80-hardened1/linux-hardened-5.10.80-hardened1.patch" + "name": "linux-hardened-5.10.83-hardened1.patch", + "sha256": "1ipx6ad7n2lzlrr02fk2qif5ac2mqpis0qghvms95dd3lpi4lj5r", + "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.10.83-hardened1/linux-hardened-5.10.83-hardened1.patch" }, - "sha256": "0ffvgxaq2ipylzavvgnnqk56pw2a6gy5zhhgdhsf8qs2cbvyhz27", - "version": "5.10.80" + "sha256": "0w4vq8wby3m9f5ryssh6z948m6zj1bjz9x432805dnrxyd1rl9gg", + "version": "5.10.83" }, "5.14": { "patch": { From a4a70dcab4a38ac13d7baa534d4e2257abf8073b Mon Sep 17 00:00:00 2001 From: TredwellGit Date: Thu, 2 Dec 2021 08:06:59 +0000 Subject: [PATCH 158/278] linux/hardened/patches/5.15: 5.15.3-hardened1 -> 5.15.6-hardened1 --- pkgs/os-specific/linux/kernel/hardened/patches.json | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/pkgs/os-specific/linux/kernel/hardened/patches.json b/pkgs/os-specific/linux/kernel/hardened/patches.json index a314b32be86e..e9d2b03a46f1 100644 --- a/pkgs/os-specific/linux/kernel/hardened/patches.json +++ b/pkgs/os-specific/linux/kernel/hardened/patches.json @@ -42,12 +42,12 @@ "5.15": { "patch": { "extra": "-hardened1", - "name": "linux-hardened-5.15.3-hardened1.patch", - "sha256": "13d78f159bhd6f1fikrnf5madrfg9zrgg4zcmnjzmb1db1irh53n", - "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.15.3-hardened1/linux-hardened-5.15.3-hardened1.patch" + "name": "linux-hardened-5.15.6-hardened1.patch", + "sha256": "1ndj0dsxpailr12pp5kg8qqsvrmcdkhzlnxarl1jsp6c70g051r1", + "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.15.6-hardened1/linux-hardened-5.15.6-hardened1.patch" }, - "sha256": "1rh5zkany0gxwha74l8ivb2psykp236h8q56plas7dc7hghxmwx9", - "version": "5.15.3" + "sha256": "1w0plw9rzk2c0g8yxzwj7c6wkq538sy56mx1skmf58wrl83bmsdk", + "version": "5.15.6" }, "5.4": { "patch": { From a93b636340c6df8424a9226b2660a9f5664d9d84 Mon Sep 17 00:00:00 2001 From: TredwellGit Date: Thu, 2 Dec 2021 08:07:07 +0000 Subject: [PATCH 159/278] linux/hardened/patches/5.4: 5.4.160-hardened1 -> 5.4.163-hardened1 --- pkgs/os-specific/linux/kernel/hardened/patches.json | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/pkgs/os-specific/linux/kernel/hardened/patches.json b/pkgs/os-specific/linux/kernel/hardened/patches.json index e9d2b03a46f1..dc3ad1a2a543 100644 --- a/pkgs/os-specific/linux/kernel/hardened/patches.json +++ b/pkgs/os-specific/linux/kernel/hardened/patches.json @@ -52,11 +52,11 @@ "5.4": { "patch": { "extra": "-hardened1", - "name": "linux-hardened-5.4.160-hardened1.patch", - "sha256": "06f7qnc21miz5yjrws3kbavj3v6ir8z3m87ljpnq55y6b73bxngy", - "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.4.160-hardened1/linux-hardened-5.4.160-hardened1.patch" + "name": "linux-hardened-5.4.163-hardened1.patch", + "sha256": "1yybid435c466grsfx53iax5x0b1ycz7a02ymx9r85gixp6qd3bp", + "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.4.163-hardened1/linux-hardened-5.4.163-hardened1.patch" }, - "sha256": "0n04nlg44l7p855lxkdz80x2avwm1pmrx1761cjmqv4w1qlq1c6l", - "version": "5.4.160" + "sha256": "1glh0azkrqdwydvbz9rp3czc5ppb72gq7svl3zbkjc6qfqbzwik2", + "version": "5.4.163" } } From 04bbfd1b889b24ca8af03e5f00254d8b56522780 Mon Sep 17 00:00:00 2001 From: TredwellGit Date: Fri, 26 Nov 2021 23:19:20 +0000 Subject: [PATCH 160/278] linux_5_14: remove https://lwn.net/ml/linux-kernel/1637500331152110@kroah.com/ https://github.com/openzfs/zfs/issues/12786 --- .../linux/kernel/hardened/patches.json | 10 ---------- pkgs/os-specific/linux/kernel/linux-5.14.nix | 18 ------------------ pkgs/os-specific/linux/zfs/default.nix | 6 +++--- pkgs/top-level/aliases.nix | 2 -- pkgs/top-level/all-packages.nix | 2 -- pkgs/top-level/linux-kernels.nix | 10 ---------- 6 files changed, 3 insertions(+), 45 deletions(-) delete mode 100644 pkgs/os-specific/linux/kernel/linux-5.14.nix diff --git a/pkgs/os-specific/linux/kernel/hardened/patches.json b/pkgs/os-specific/linux/kernel/hardened/patches.json index dc3ad1a2a543..a02d34f2e24f 100644 --- a/pkgs/os-specific/linux/kernel/hardened/patches.json +++ b/pkgs/os-specific/linux/kernel/hardened/patches.json @@ -29,16 +29,6 @@ "sha256": "0w4vq8wby3m9f5ryssh6z948m6zj1bjz9x432805dnrxyd1rl9gg", "version": "5.10.83" }, - "5.14": { - "patch": { - "extra": "-hardened1", - "name": "linux-hardened-5.14.20-hardened1.patch", - "sha256": "0bnbwcayfcijgchnhyig9g9q334f4x1hwqns1zwg0wnsi3kxvcsb", - "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.14.20-hardened1/linux-hardened-5.14.20-hardened1.patch" - }, - "sha256": "0icb14xmwijcamqbnj3v16cl1awmjzhg9cniw5gwwk6la1d7aiwj", - "version": "5.14.20" - }, "5.15": { "patch": { "extra": "-hardened1", diff --git a/pkgs/os-specific/linux/kernel/linux-5.14.nix b/pkgs/os-specific/linux/kernel/linux-5.14.nix deleted file mode 100644 index be5ca19bf359..000000000000 --- a/pkgs/os-specific/linux/kernel/linux-5.14.nix +++ /dev/null @@ -1,18 +0,0 @@ -{ lib, buildPackages, fetchurl, perl, buildLinux, nixosTests, modDirVersionArg ? null, ... } @ args: - -with lib; - -buildLinux (args // rec { - version = "5.14.21"; - - # modDirVersion needs to be x.y.z, will automatically add .0 if needed - modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; - - # branchVersion needs to be x.y - extraMeta.branch = versions.majorMinor version; - - src = fetchurl { - url = "mirror://kernel/linux/kernel/v5.x/linux-${version}.tar.xz"; - sha256 = "1cr381c179nfdrq95l4j56c4ygw09sxv493553ix4b80naf2a6pl"; - }; -} // (args.argsOverride or { })) diff --git a/pkgs/os-specific/linux/zfs/default.nix b/pkgs/os-specific/linux/zfs/default.nix index 50327bc658f2..29e7f3e9b942 100644 --- a/pkgs/os-specific/linux/zfs/default.nix +++ b/pkgs/os-specific/linux/zfs/default.nix @@ -16,7 +16,7 @@ , enablePython ? true # for determining the latest compatible linuxPackages -, linuxPackages_5_14 ? pkgs.linuxKernel.packages.linux_5_14 +, linuxPackages_5_10 ? pkgs.linuxKernel.packages.linux_5_10 }: with lib; @@ -216,7 +216,7 @@ in { zfsStable = common { # check the release notes for compatible kernels kernelCompatible = kernel.kernelAtLeast "3.10" && kernel.kernelOlder "5.15"; - latestCompatibleLinuxPackages = linuxPackages_5_14; + latestCompatibleLinuxPackages = linuxPackages_5_10; # this package should point to the latest release. version = "2.1.1"; @@ -227,7 +227,7 @@ in { zfsUnstable = common { # check the release notes for compatible kernels kernelCompatible = kernel.kernelAtLeast "3.10" && kernel.kernelOlder "5.15"; - latestCompatibleLinuxPackages = linuxPackages_5_14; + latestCompatibleLinuxPackages = linuxPackages_5_10; # this package should point to a version / git revision compatible with the latest kernel release # IMPORTANT: Always use a tagged release candidate or commits from the diff --git a/pkgs/top-level/aliases.nix b/pkgs/top-level/aliases.nix index cf33d0c52f2c..a57079ca1a01 100644 --- a/pkgs/top-level/aliases.nix +++ b/pkgs/top-level/aliases.nix @@ -481,7 +481,6 @@ mapAliases ({ linuxPackages_4_19 = linuxKernel.packages.linux_4_19; linuxPackages_5_4 = linuxKernel.packages.linux_5_4; linuxPackages_5_10 = linuxKernel.packages.linux_5_10; - linuxPackages_5_14 = linuxKernel.packages.linux_5_14; linuxPackages_5_15 = linuxKernel.packages.linux_5_15; linux_mptcp_95 = linuxKernel.kernels.linux_mptcp_95; @@ -497,7 +496,6 @@ mapAliases ({ linux-rt_5_4 = linuxKernel.kernels.linux_rt_5_4; linux_5_10 = linuxKernel.kernels.linux_5_10; linux-rt_5_10 = linuxKernel.kernels.linux_rt_5_10; - linux_5_14 = linuxKernel.kernels.linux_5_14; linux_5_15 = linuxKernel.kernels.linux_5_15; # added 2020-04-04 diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 74e24ccc16d6..e7ebb313370b 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -22245,8 +22245,6 @@ with pkgs; linux_5_4_hardened = linuxKernel.kernels.linux_5_4_hardened; linuxPackages_5_10_hardened = linuxKernel.packages.linux_5_10_hardened; linux_5_10_hardened = linuxKernel.kernels.linux_5_10_hardened; - linuxPackages_5_14_hardened = linuxKernel.packages.linux_5_14_hardened; - linux_5_14_hardened = linuxKernel.kernels.linux_5_14_hardened; linuxPackages_5_15_hardened = linuxKernel.packages.linux_5_15_hardened; linux_5_15_hardened = linuxKernel.kernels.linux_5_15_hardened; diff --git a/pkgs/top-level/linux-kernels.nix b/pkgs/top-level/linux-kernels.nix index 64b5d068220f..37a5fea9e2e4 100644 --- a/pkgs/top-level/linux-kernels.nix +++ b/pkgs/top-level/linux-kernels.nix @@ -159,13 +159,6 @@ in { ]; }; - linux_5_14 = callPackage ../os-specific/linux/kernel/linux-5.14.nix { - kernelPatches = [ - kernelPatches.bridge_stp_helper - kernelPatches.request_key_helper - ]; - }; - linux_5_15 = callPackage ../os-specific/linux/kernel/linux-5.15.nix { kernelPatches = [ kernelPatches.bridge_stp_helper @@ -229,7 +222,6 @@ in { linux_4_19_hardened = hardenedKernelFor kernels.linux_4_19 { }; linux_5_4_hardened = hardenedKernelFor kernels.linux_5_4 { }; linux_5_10_hardened = hardenedKernelFor kernels.linux_5_10 { }; - linux_5_14_hardened = hardenedKernelFor kernels.linux_5_14 { }; linux_5_15_hardened = hardenedKernelFor kernels.linux_5_15 { }; })); @@ -467,7 +459,6 @@ in { linux_4_19 = recurseIntoAttrs (packagesFor kernels.linux_4_19); linux_5_4 = recurseIntoAttrs (packagesFor kernels.linux_5_4); linux_5_10 = recurseIntoAttrs (packagesFor kernels.linux_5_10); - linux_5_14 = recurseIntoAttrs (packagesFor kernels.linux_5_14); linux_5_15 = recurseIntoAttrs (packagesFor kernels.linux_5_15); }; @@ -497,7 +488,6 @@ in { linux_4_19_hardened = recurseIntoAttrs (hardenedPackagesFor kernels.linux_4_19 { }); linux_5_4_hardened = recurseIntoAttrs (hardenedPackagesFor kernels.linux_5_4 { }); linux_5_10_hardened = recurseIntoAttrs (hardenedPackagesFor kernels.linux_5_10 { }); - linux_5_14_hardened = recurseIntoAttrs (hardenedPackagesFor kernels.linux_5_14 { }); linux_5_15_hardened = recurseIntoAttrs (hardenedPackagesFor kernels.linux_5_15 { }); linux_zen = recurseIntoAttrs (packagesFor kernels.linux_zen); From 5c0328242e024854561380619a9ca190bd56988f Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 00:19:42 +0000 Subject: [PATCH 161/278] pet: 0.3.6 -> 0.4.0 --- pkgs/development/tools/pet/default.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/development/tools/pet/default.nix b/pkgs/development/tools/pet/default.nix index 4ed16d417466..653bc8aca729 100644 --- a/pkgs/development/tools/pet/default.nix +++ b/pkgs/development/tools/pet/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "pet"; - version = "0.3.6"; + version = "0.4.0"; src = fetchFromGitHub { owner = "knqyf263"; repo = "pet"; rev = "v${version}"; - sha256 = "1na3az7vicjq1rxd3ybid47yrblsdazgli0dchkbwh8zchwhqj33"; + sha256 = "sha256-gVTpzmXekQxGMucDKskGi+e+34nJwwsXwvQTjRO6Gdg="; }; - vendorSha256 = "0pnd89iqdj3f719xf4iy5r04n51d0rrrf0qb2zjirpw7vh7g82i9"; + vendorSha256 = "sha256-vciiBzmqUAt5ZWn9go4B1uaz0HsBk5Z9Rbw7/MAimY4="; doCheck = false; From 83e078ecb35d7c04eb0131d5163f3d876b173cc1 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 00:24:28 +0000 Subject: [PATCH 162/278] postgresql11Packages.pgtap: 1.1.0 -> 1.2.0 --- pkgs/servers/sql/postgresql/ext/pgtap.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/servers/sql/postgresql/ext/pgtap.nix b/pkgs/servers/sql/postgresql/ext/pgtap.nix index 396e743e70b4..7e59eb4e953e 100644 --- a/pkgs/servers/sql/postgresql/ext/pgtap.nix +++ b/pkgs/servers/sql/postgresql/ext/pgtap.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "pgtap"; - version = "1.1.0"; + version = "1.2.0"; src = fetchFromGitHub { owner = "theory"; repo = "pgtap"; rev = "v${version}"; - sha256 = "09fvzsl8m18yzpvrz6cqvs1ffzs451iwmb2mw39yq69jgqby5kqy"; + sha256 = "sha256-lb0PRffwo6J5a6Hqw1ggvn0cW7gPZ02OEcLPi9ineI8="; }; nativeBuildInputs = [ postgresql perl perlPackages.TAPParserSourceHandlerpgTAP which ]; From 5c647de65fa8c115319092e938ef1225ab7c7700 Mon Sep 17 00:00:00 2001 From: Adson Cicilioti Date: Tue, 7 Dec 2021 21:35:43 -0300 Subject: [PATCH 163/278] maintainers: add AdsonCicilioti --- maintainers/maintainer-list.nix | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/maintainers/maintainer-list.nix b/maintainers/maintainer-list.nix index e9b7df1801b7..e098cf76fd5d 100644 --- a/maintainers/maintainer-list.nix +++ b/maintainers/maintainer-list.nix @@ -278,6 +278,12 @@ githubId = 1250775; name = "Adolfo E. García Castro"; }; + AdsonCicilioti = { + name = "Adson Cicilioti"; + email = "adson.cicilioti@live.com"; + github = "AdsonCicilioti"; + githubId = 6278398; + }; adsr = { email = "as@php.net"; github = "adsr"; From 7e48f4294eb86789d47086e368709d9bb65c1d0b Mon Sep 17 00:00:00 2001 From: Adson Cicilioti Date: Tue, 7 Dec 2021 21:37:07 -0300 Subject: [PATCH 164/278] clickgen: init at 1.1.9 --- .../python-modules/clickgen/default.nix | 46 +++++++++++++++++++ pkgs/top-level/all-packages.nix | 2 + pkgs/top-level/python-packages.nix | 2 + 3 files changed, 50 insertions(+) create mode 100644 pkgs/development/python-modules/clickgen/default.nix diff --git a/pkgs/development/python-modules/clickgen/default.nix b/pkgs/development/python-modules/clickgen/default.nix new file mode 100644 index 000000000000..141fd4569b52 --- /dev/null +++ b/pkgs/development/python-modules/clickgen/default.nix @@ -0,0 +1,46 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, pillow +, libX11 +, libXcursor +, libpng +, python +}: + +buildPythonPackage rec { + pname = "clickgen"; + version = "1.1.9"; + + src = fetchFromGitHub { + owner = "ful1e5"; + repo = "clickgen"; + rev = "v${version}"; + sha256 = "108f3sbramd3hhs4d84s3i3lbwllfrkvjakjq4gdmbw6xpilvm0l"; + }; + + buildInputs = [ libXcursor libX11 libpng ]; + + propagatedBuildInputs = [ pillow ]; + + pythonImportsCheck = [ "clickgen" ]; + + postInstall = '' + install -m644 clickgen/xcursorgen.so $out/${python.sitePackages}/clickgen/xcursorgen.so + ''; + + # Tests fail with ${bitmap_error}. + # Application works normally if tests are disabled + doCheck = false; + + meta = with lib; { + homepage = "https://github.com/ful1e5/clickgen"; + description = "The hassle-free cursor building toolbox"; + longDescription = '' + clickgen is API for building X11 and Windows Cursors from + .png files. clickgen is using anicursorgen and xcursorgen under the hood. + ''; + license = licenses.mit; + maintainers = with maintainers; [ AdsonCicilioti ]; + }; +} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index e7ebb313370b..1d032db17d97 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -2478,6 +2478,8 @@ with pkgs; clickclack = callPackage ../tools/misc/clickclack { }; + clickgen = with python3Packages; toPythonApplication clickgen; + clog-cli = callPackage ../development/tools/clog-cli { }; cloud-init = python3.pkgs.callPackage ../tools/virtualization/cloud-init { }; diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index ee2cc85022da..1b8062ce6175 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -1597,6 +1597,8 @@ in { click-threading = callPackage ../development/python-modules/click-threading { }; + clickgen = callPackage ../development/python-modules/clickgen { }; + clickhouse-cityhash = callPackage ../development/python-modules/clickhouse-cityhash { }; clickhouse-cli = callPackage ../development/python-modules/clickhouse-cli { }; From b8fbdc8852549db892853c2fa3a1b7549d35493f Mon Sep 17 00:00:00 2001 From: Adson Cicilioti Date: Tue, 7 Dec 2021 21:38:38 -0300 Subject: [PATCH 165/278] bibata-cursors: 0.4.2 -> 1.1.2 --- pkgs/data/icons/bibata-cursors/default.nix | 59 ++++++++++++---------- 1 file changed, 31 insertions(+), 28 deletions(-) diff --git a/pkgs/data/icons/bibata-cursors/default.nix b/pkgs/data/icons/bibata-cursors/default.nix index 04fb6281f253..15905bec3a97 100644 --- a/pkgs/data/icons/bibata-cursors/default.nix +++ b/pkgs/data/icons/bibata-cursors/default.nix @@ -1,51 +1,54 @@ -{ lib, stdenvNoCC, fetchFromGitHub, gnome-themes-extra, inkscape, xcursorgen, python3 }: +{ lib +, stdenv +, fetchFromGitHub +, fetchurl +, clickgen +, unzip +}: -let - py = python3.withPackages(ps: [ ps.pillow ]); -in stdenvNoCC.mkDerivation rec { +stdenv.mkDerivation rec { pname = "bibata-cursors"; - version = "0.4.2"; + version = "1.1.2"; src = fetchFromGitHub { - owner = "KaizIqbal"; + owner = "ful1e5"; repo = "Bibata_Cursor"; rev = "v${version}"; - sha256 = "1f7i5jkl21fvrr45zpcj40avkc7camjb1ddrrdlaabbplgz5mcgn"; + sha256 = "1q2wdbrmdnr9mwiilm5cc9im3zwbl7yaj1zpy5wwn44ypq3hcngy"; }; - postPatch = '' - patchShebangs . - substituteInPlace build.sh --replace "sudo" "" + bitmaps = fetchurl { + url = "https://github.com/ful1e5/Bibata_Cursor/releases/download/v${version}/bitmaps.zip"; + sha256 = "1pcn6par0f0syyhzpzmqr3c6b9ri4lprkdd2ncwzdas01p2d9v1i"; + }; - # Don't generate windows cursors, - # they aren't used and aren't installed - # by the project's install script anyway. - echo "exit 0" > w32-make.sh - ''; + nativeBuildInputs = [ unzip ]; - nativeBuildInputs = [ - gnome-themes-extra - inkscape - xcursorgen - py - ]; + buildInputs = [ clickgen ]; buildPhase = '' - HOME="$NIX_BUILD_ROOT" ./build.sh + mkdir bitmaps + unzip $bitmaps -d bitmaps + rm -rf themes + cd builder && make build_unix ''; installPhase = '' install -dm 0755 $out/share/icons - for x in Bibata_*; do - cp -pr $x/out/X11/$x $out/share/icons/ - done + cd ../ + cp -rf themes/* $out/share/icons/ + ''; + + postPatch = '' + substituteInPlace "builder/Makefile" \ + --replace "/bin/bash" "bash" ''; meta = with lib; { - description = "Material Based Cursor"; - homepage = "https://github.com/KaizIqbal/Bibata_Cursor"; + description = "Material Based Cursor Theme"; + homepage = "https://github.com/ful1e5/Bibata_Cursor"; license = licenses.gpl3; platforms = platforms.linux; - maintainers = with maintainers; [ rawkode ]; + maintainers = with maintainers; [ rawkode AdsonCicilioti ]; }; } From 408ecd60d43ad0985a65e7b0c3ec6d2e5d18ab1a Mon Sep 17 00:00:00 2001 From: Adson Cicilioti Date: Tue, 7 Dec 2021 21:39:55 -0300 Subject: [PATCH 166/278] bibata-extra-cursors: 0.3 -> 1.0.1 --- pkgs/data/icons/bibata-cursors/extra.nix | 59 +++++++++++++----------- 1 file changed, 31 insertions(+), 28 deletions(-) diff --git a/pkgs/data/icons/bibata-cursors/extra.nix b/pkgs/data/icons/bibata-cursors/extra.nix index f59b12ec76a9..a6fdaca84277 100644 --- a/pkgs/data/icons/bibata-cursors/extra.nix +++ b/pkgs/data/icons/bibata-cursors/extra.nix @@ -1,51 +1,54 @@ -{ lib, stdenvNoCC, fetchFromGitHub, gnome-themes-extra, inkscape, xcursorgen, python3 }: +{ lib +, stdenv +, fetchFromGitHub +, fetchurl +, clickgen +, unzip +}: -let - py = python3.withPackages(ps: [ ps.pillow ]); -in stdenvNoCC.mkDerivation rec { +stdenv.mkDerivation rec { pname = "bibata-extra-cursors"; - version = "0.3"; + version = "1.0.1"; src = fetchFromGitHub { - owner = "KaizIqbal"; + owner = "ful1e5"; repo = "Bibata_Extra_Cursor"; rev = "v${version}"; - sha256 = "1bh945hvakbh985jkr6g6x0myw3k49pvn24m1clvqdv35v65nfxk"; + sha256 = "0wndl4c547k99y0gq922hn7z1mwdgxvvyjfm6757g6shfbcmkz7m"; }; - postPatch = '' - patchShebangs . - substituteInPlace build.sh --replace "sudo" "" + bitmaps = fetchurl { + url = "https://github.com/ful1e5/Bibata_Extra_Cursor/releases/download/v${version}/bitmaps.zip"; + sha256 = "0vf14ln53wigaq3dkqdk5avarqplsq751nlv72da04ms6gqjfhdl"; + }; - # Don't generate windows cursors, - # they aren't used and aren't installed - # by the project's install script anyway. - echo "exit 0" > w32-make.sh - ''; + nativeBuildInputs = [ unzip ]; - nativeBuildInputs = [ - gnome-themes-extra - inkscape - xcursorgen - py - ]; + buildInputs = [ clickgen ]; buildPhase = '' - HOME="$NIX_BUILD_ROOT" ./build.sh + mkdir bitmaps + unzip $bitmaps -d bitmaps + rm -rf themes + cd builder && make build_unix ''; installPhase = '' install -dm 0755 $out/share/icons - for x in Bibata_*; do - cp -pr $x/out/X11/$x $out/share/icons/ - done + cd ../ + cp -rf themes/* $out/share/icons/ + ''; + + postPatch = '' + substituteInPlace "builder/Makefile" \ + --replace "/bin/bash" "bash" ''; meta = with lib; { - description = "Cursors Based on Bibata"; - homepage = "https://github.com/KaizIqbal/Bibata_Extra_Cursor"; + description = "Material Based Cursor Theme"; + homepage = "https://github.com/ful1e5/Bibata_Extra_Cursor"; license = licenses.gpl3; platforms = platforms.linux; - maintainers = with maintainers; [ dtzWill ]; + maintainers = with maintainers; [ dtzWill AdsonCicilioti ]; }; } From 15e4cefbea5ead252b4b0145e2b8751a75aa37a5 Mon Sep 17 00:00:00 2001 From: Adson Cicilioti Date: Tue, 7 Dec 2021 21:40:15 -0300 Subject: [PATCH 167/278] bibata-cursors-translucent: unstable-2019-09-13 -> 1.1.1 --- .../data/icons/bibata-cursors/translucent.nix | 27 +++++-------------- 1 file changed, 6 insertions(+), 21 deletions(-) diff --git a/pkgs/data/icons/bibata-cursors/translucent.nix b/pkgs/data/icons/bibata-cursors/translucent.nix index d1e2814a8aa3..74d7c4d7c3f9 100644 --- a/pkgs/data/icons/bibata-cursors/translucent.nix +++ b/pkgs/data/icons/bibata-cursors/translucent.nix @@ -1,31 +1,16 @@ -{ lib, stdenvNoCC, fetchFromGitHub, gnome-themes-extra, inkscape, xcursorgen }: +{ lib, stdenv, fetchFromGitHub }: -stdenvNoCC.mkDerivation rec { +stdenv.mkDerivation rec { pname = "bibata-cursors-translucent"; - version = "unstable-2019-09-13"; + version = "1.1.1"; src = fetchFromGitHub { owner = "Silicasandwhich"; repo = "Bibata_Cursor_Translucent"; - rev = "2eed979d817148817ea6bca15c594809aa9c2cb9"; - sha256 = "1s688v40xx9jbvfncb4kgfnnxkmknji7igqx7c4q1ly9s7imbd1f"; + rev = "v${version}"; + sha256 = "1ddnwqkxricnd731blckcxvksbgql8k4pfiz65591p81n5095k8y"; }; - postPatch = '' - patchShebangs . - substituteInPlace build.sh --replace "gksu " "" - ''; - - nativeBuildInputs = [ - gnome-themes-extra - inkscape - xcursorgen - ]; - - buildPhase = '' - HOME="$NIX_BUILD_ROOT" ./build.sh - ''; - installPhase = '' install -dm 0755 $out/share/icons cp -pr Bibata_* $out/share/icons/ @@ -36,6 +21,6 @@ stdenvNoCC.mkDerivation rec { homepage = "https://github.com/Silicasandwhich/Bibata_Cursor_Translucent"; license = licenses.gpl3; platforms = platforms.linux; - maintainers = with maintainers; [ dtzWill ]; + maintainers = with maintainers; [ dtzWill AdsonCicilioti ]; }; } From c3f889934a54801c7232b7c50f898282ddc62923 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 00:40:23 +0000 Subject: [PATCH 168/278] pistol: 0.3.1 -> 0.3.2 --- pkgs/tools/misc/pistol/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/tools/misc/pistol/default.nix b/pkgs/tools/misc/pistol/default.nix index 3ef95782e44f..930554d18696 100644 --- a/pkgs/tools/misc/pistol/default.nix +++ b/pkgs/tools/misc/pistol/default.nix @@ -8,13 +8,13 @@ buildGoModule rec { pname = "pistol"; - version = "0.3.1"; + version = "0.3.2"; src = fetchFromGitHub { owner = "doronbehar"; repo = pname; rev = "v${version}"; - sha256 = "sha256-ZLSPq9FfzbuePrz11bqpAIQIfKfTIEnP6KcEIlW5LAA="; + sha256 = "sha256-DGbWlEDI/qGNpdT8N79RsLxnUm4Sw8lHFRIBFd1GmK0="; }; vendorSha256 = "sha256-poTd0lXRaJeDxwcw+h76NPC0mFB9nwm2vLLB5UUK1dk="; From 2d91877c3778bdf8223ccd9899cc5f6c7cf13d56 Mon Sep 17 00:00:00 2001 From: Adson Cicilioti Date: Tue, 7 Dec 2021 22:57:20 -0300 Subject: [PATCH 169/278] clickgen: run tests with pytestCheckHook --- pkgs/development/python-modules/clickgen/default.nix | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/pkgs/development/python-modules/clickgen/default.nix b/pkgs/development/python-modules/clickgen/default.nix index 141fd4569b52..a85cee778b0b 100644 --- a/pkgs/development/python-modules/clickgen/default.nix +++ b/pkgs/development/python-modules/clickgen/default.nix @@ -6,6 +6,7 @@ , libXcursor , libpng , python +, pytestCheckHook }: buildPythonPackage rec { @@ -29,9 +30,7 @@ buildPythonPackage rec { install -m644 clickgen/xcursorgen.so $out/${python.sitePackages}/clickgen/xcursorgen.so ''; - # Tests fail with ${bitmap_error}. - # Application works normally if tests are disabled - doCheck = false; + checkInputs = [ pytestCheckHook ]; meta = with lib; { homepage = "https://github.com/ful1e5/clickgen"; From 7b1d8bd18273ba25564a52a2b144ddf41f226ec3 Mon Sep 17 00:00:00 2001 From: Matt Christ Date: Tue, 7 Dec 2021 20:35:50 -0600 Subject: [PATCH 170/278] brscan5: fix nixos test import 're' so we can do regex stuff in this test --- nixos/tests/brscan5.nix | 1 + 1 file changed, 1 insertion(+) diff --git a/nixos/tests/brscan5.nix b/nixos/tests/brscan5.nix index 715191b383cb..9aed742f6de7 100644 --- a/nixos/tests/brscan5.nix +++ b/nixos/tests/brscan5.nix @@ -23,6 +23,7 @@ import ./make-test-python.nix ({ pkgs, ...} : { }; testScript = '' + import re # sane loads libsane-brother5.so.1 successfully, and scanimage doesn't die strace = machine.succeed('strace scanimage -L 2>&1').split("\n") regexp = 'openat\(.*libsane-brother5.so.1", O_RDONLY|O_CLOEXEC\) = \d\d*$' From a0a41b405eaf806aa0bfc6033d80a3d9855f9b7d Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 03:37:05 +0000 Subject: [PATCH 171/278] py-spy: 0.3.10 -> 0.3.11 --- pkgs/development/tools/py-spy/default.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/development/tools/py-spy/default.nix b/pkgs/development/tools/py-spy/default.nix index ed1f7aa0f795..c6bc51b4f844 100644 --- a/pkgs/development/tools/py-spy/default.nix +++ b/pkgs/development/tools/py-spy/default.nix @@ -2,13 +2,13 @@ rustPlatform.buildRustPackage rec { pname = "py-spy"; - version = "0.3.10"; + version = "0.3.11"; src = fetchFromGitHub { owner = "benfred"; repo = "py-spy"; rev = "v${version}"; - sha256 = "sha256-OiYYWLbdDrte0+YeJklt5pX2u2f4PnWJ4dyGWJBiTmQ="; + sha256 = "sha256-4Zp4IGd4lKBC0ye2/7Tfpz8vJzm0VnkKqx/2k3mCj3A="; }; NIX_CFLAGS_COMPILE = "-L${libunwind}/lib"; @@ -20,7 +20,7 @@ rustPlatform.buildRustPackage rec { checkInputs = [ python3 ]; - cargoSha256 = "sha256-Dn+1C+RRjxu8onejeKB9WsVGtthTy3Uit9jm2JtyN1w="; + cargoSha256 = "sha256-LEtmzCoT8esBYh9PkCGpzUU7miaWd3Ao0z/LzxhP39A="; meta = with lib; { description = "Sampling profiler for Python programs"; From d7f8016963cc006c044d0d5985ffeb79903f6966 Mon Sep 17 00:00:00 2001 From: zowoq <59103226+zowoq@users.noreply.github.com> Date: Wed, 8 Dec 2021 13:58:09 +1000 Subject: [PATCH 172/278] delta: 0.11.1 -> 0.11.2 https://github.com/dandavison/delta/releases/tag/0.11.2 --- .../version-management/git-and-tools/delta/default.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/applications/version-management/git-and-tools/delta/default.nix b/pkgs/applications/version-management/git-and-tools/delta/default.nix index b09b92842f31..3b1c648144d3 100644 --- a/pkgs/applications/version-management/git-and-tools/delta/default.nix +++ b/pkgs/applications/version-management/git-and-tools/delta/default.nix @@ -11,16 +11,16 @@ rustPlatform.buildRustPackage rec { pname = "delta"; - version = "0.11.1"; + version = "0.11.2"; src = fetchFromGitHub { owner = "dandavison"; repo = pname; rev = version; - sha256 = "sha256-coxETvB/uKTgg5VFlvcFmbNj95paDWkpq0zUIeR9//8="; + sha256 = "sha256-GboG7Ia27CTisY0YCFiAhzoCMxMAXlCeAPll19+JoxM="; }; - cargoSha256 = "sha256-V6px+OGe9vHg/OgiEbT+TG1PmUIgWPVuv+AD176W0Bo="; + cargoSha256 = "sha256-JEIMZFDEWaKXfe4OzaAxMop0XYQAcz8L7hcTBD8DJio="; nativeBuildInputs = [ installShellFiles ]; From ffd1e95bcbacd9f33aff482ffc5ac3abca4f9931 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 04:12:31 +0000 Subject: [PATCH 173/278] php74Extensions.ast: 1.0.12 -> 1.0.16 --- pkgs/development/php-packages/ast/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/php-packages/ast/default.nix b/pkgs/development/php-packages/ast/default.nix index 65e734e9254d..7ab4ff13b402 100644 --- a/pkgs/development/php-packages/ast/default.nix +++ b/pkgs/development/php-packages/ast/default.nix @@ -3,8 +3,8 @@ buildPecl { pname = "ast"; - version = "1.0.12"; - sha256 = "1mcfx989yrakixlsx2d8v6kyxawfwhig4mra9ccpjasfhad0d31x"; + version = "1.0.16"; + sha256 = "sha256-Rb2jS3gMRmHOd89lzYpQT7VlJtS0Vu3Ml9eRyG84ec4="; meta = with lib; { description = "Exposes the abstract syntax tree generated by PHP"; From 92eb421af04c7a8d1220b43ba86ea0494f7f7412 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 04:17:27 +0000 Subject: [PATCH 174/278] profile-cleaner: 2.42 -> 2.44 --- pkgs/tools/misc/profile-cleaner/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/tools/misc/profile-cleaner/default.nix b/pkgs/tools/misc/profile-cleaner/default.nix index 0a50ff49f653..6680fbde2ad0 100644 --- a/pkgs/tools/misc/profile-cleaner/default.nix +++ b/pkgs/tools/misc/profile-cleaner/default.nix @@ -1,14 +1,14 @@ { lib, stdenv, fetchFromGitHub, makeWrapper, parallel, sqlite, bc, file }: stdenv.mkDerivation rec { - version = "2.42"; + version = "2.44"; pname = "profile-cleaner"; src = fetchFromGitHub { owner = "graysky2"; repo = "profile-cleaner"; rev = "v${version}"; - sha256 = "1d94lp91i4y896vyc7fc3ysha700cwzsdjmmmwlm6h2zp652c73y"; + sha256 = "sha256-OkrZb8skglczJEjwJSZINELeStdsILQO4GfZ1uLSnQY="; }; nativeBuildInputs = [ makeWrapper ]; From 42fb1714d703a01666e24ae8c69285c927256671 Mon Sep 17 00:00:00 2001 From: Mario Rodas Date: Wed, 8 Dec 2021 04:20:00 +0000 Subject: [PATCH 175/278] navi: make fzf optional Navi also allows to configure Skim as finder --- pkgs/applications/misc/navi/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/applications/misc/navi/default.nix b/pkgs/applications/misc/navi/default.nix index 2075f96285b3..840db0400f54 100644 --- a/pkgs/applications/misc/navi/default.nix +++ b/pkgs/applications/misc/navi/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchFromGitHub, fzf, lib, makeWrapper, rustPlatform, wget, libiconv }: +{ stdenv, fetchFromGitHub, lib, makeWrapper, rustPlatform, wget, libiconv, withFzf ? true, fzf }: rustPlatform.buildRustPackage rec { pname = "navi"; @@ -20,7 +20,7 @@ rustPlatform.buildRustPackage rec { postInstall = '' wrapProgram $out/bin/navi \ --prefix PATH : "$out/bin" \ - --prefix PATH : ${lib.makeBinPath [ fzf wget ]} + --prefix PATH : ${lib.makeBinPath([ wget ] ++ lib.optionals withFzf [ fzf ])} ''; checkFlags = [ From 46a15c08380556bd837beffce866deb5e519819b Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 04:32:38 +0000 Subject: [PATCH 176/278] postgresql11Packages.pg_partman: 4.5.1 -> 4.6.0 --- pkgs/servers/sql/postgresql/ext/pg_partman.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/servers/sql/postgresql/ext/pg_partman.nix b/pkgs/servers/sql/postgresql/ext/pg_partman.nix index d2e7dd37be15..9e4b3171dd38 100644 --- a/pkgs/servers/sql/postgresql/ext/pg_partman.nix +++ b/pkgs/servers/sql/postgresql/ext/pg_partman.nix @@ -2,7 +2,7 @@ stdenv.mkDerivation rec { pname = "pg_partman"; - version = "4.5.1"; + version = "4.6.0"; buildInputs = [ postgresql ]; @@ -10,7 +10,7 @@ stdenv.mkDerivation rec { owner = "pgpartman"; repo = pname; rev = "refs/tags/v${version}"; - sha256 = "182yqvgcpgw99swn7w516f6d1bid2gnmf6dfsgmldx5viz0d6vi0"; + sha256 = "sha256-DpK3D7PEZ1sO9bYvwwT9L8jtDmUGMbHtx2s9juzL6RQ="; }; installPhase = '' From 7aa3afede93fe659958a4cf35edbd540708d945b Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 04:37:35 +0000 Subject: [PATCH 177/278] primesieve: 7.6 -> 7.7 --- .../development/libraries/science/math/primesieve/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/libraries/science/math/primesieve/default.nix b/pkgs/development/libraries/science/math/primesieve/default.nix index 15b4d6a66a30..2367b373b1c5 100644 --- a/pkgs/development/libraries/science/math/primesieve/default.nix +++ b/pkgs/development/libraries/science/math/primesieve/default.nix @@ -2,7 +2,7 @@ stdenv.mkDerivation rec { pname = "primesieve"; - version = "7.6"; + version = "7.7"; nativeBuildInputs = [ cmake ]; @@ -10,7 +10,7 @@ stdenv.mkDerivation rec { owner = "kimwalisch"; repo = "primesieve"; rev = "v${version}"; - sha256 = "sha256-rSNYoWBy80BgPi1c+BSKbWTyGGb7/fxmu+mq1DXakHY="; + sha256 = "sha256-1Gfo00yaf7zHzCLfu/abWqeM0qBuLu+f+lowFFnWFxY="; }; meta = with lib; { From a7c3993132c69f49eab78a4b74a0f8c3ddd1ff55 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 04:58:37 +0000 Subject: [PATCH 178/278] php74Packages.php-cs-fixer: 3.0.0 -> 3.3.2 --- pkgs/development/php-packages/php-cs-fixer/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/php-packages/php-cs-fixer/default.nix b/pkgs/development/php-packages/php-cs-fixer/default.nix index 2e6cc6723be4..02461ca7188b 100644 --- a/pkgs/development/php-packages/php-cs-fixer/default.nix +++ b/pkgs/development/php-packages/php-cs-fixer/default.nix @@ -1,14 +1,14 @@ { mkDerivation, fetchurl, makeWrapper, lib, php }: let pname = "php-cs-fixer"; - version = "3.0.0"; + version = "3.3.2"; in mkDerivation { inherit pname version; src = fetchurl { url = "https://github.com/FriendsOfPHP/PHP-CS-Fixer/releases/download/v${version}/php-cs-fixer.phar"; - sha256 = "141rkcr0wbsqnc4s5vg4bk4dmxwigwxa3j0vi5c42b5k1lq3sgwr"; + sha256 = "sha256-iny2/L+RbwHUtCO3hQtEAbxocnUBG29DcyJnmk/EYT8="; }; dontUnpack = true; From e248329f1c0ad9e97122e22f7450071a2be129c2 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 05:04:00 +0000 Subject: [PATCH 179/278] php74Extensions.protobuf: 3.17.3 -> 3.19.1 --- pkgs/development/php-packages/protobuf/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/php-packages/protobuf/default.nix b/pkgs/development/php-packages/protobuf/default.nix index 87007b1ea12b..2d4a1af9af6c 100644 --- a/pkgs/development/php-packages/protobuf/default.nix +++ b/pkgs/development/php-packages/protobuf/default.nix @@ -3,8 +3,8 @@ buildPecl { pname = "protobuf"; - version = "3.17.3"; - sha256 = "05nn6ps271vwrbr9w08lyyzsszabnqhz1x0vbblg0q8y2xrmb6dl"; + version = "3.19.1"; + sha256 = "sha256-kAPNPnvbCrmGITM3Hjpsn62TASV8eNCizFN8+1+I6bY="; buildInputs = [ pcre2 ]; From 6494a49b1a60bcdc3368f1418dac9df6549e1a1f Mon Sep 17 00:00:00 2001 From: Doron Behar Date: Wed, 8 Dec 2021 07:04:56 +0200 Subject: [PATCH 180/278] pdfcpu: Add an installCheck --- pkgs/applications/graphics/pdfcpu/default.nix | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/pkgs/applications/graphics/pdfcpu/default.nix b/pkgs/applications/graphics/pdfcpu/default.nix index 29cbbf257ac3..f2ffa143aebb 100644 --- a/pkgs/applications/graphics/pdfcpu/default.nix +++ b/pkgs/applications/graphics/pdfcpu/default.nix @@ -15,6 +15,12 @@ buildGoModule rec { # No tests doCheck = false; + doInstallCheck = true; + installCheckPhase = '' + export HOME=$(mktemp -d) + echo checking the version print of pdfcpu + $out/bin/pdfcpu version | grep ${version} + ''; subPackages = [ "cmd/pdfcpu" ]; From 5e1ce628fdaef5a60fd664c569533482849dda25 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 05:09:09 +0000 Subject: [PATCH 181/278] powercap: 0.3.1 -> 0.4.0 --- pkgs/os-specific/linux/powercap/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/os-specific/linux/powercap/default.nix b/pkgs/os-specific/linux/powercap/default.nix index ad9de9f75d5d..5d6c1ab9b08d 100644 --- a/pkgs/os-specific/linux/powercap/default.nix +++ b/pkgs/os-specific/linux/powercap/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "powercap"; - version = "0.3.1"; + version = "0.4.0"; src = fetchFromGitHub { owner = "powercap"; repo = "powercap"; rev = "v${version}"; - sha256 = "0f1sg1zsskcfralg9khwq7lmz25gvnyknza3bb0hmh1a9lw0jhdn"; + sha256 = "sha256-9THXWDGflqTafOMIFg+w0L9L+6xevf0ksWCXFFqI4sI="; }; nativeBuildInputs = [ cmake ]; From 8ac241805db8046b61fb9278fdc80c85bd911908 Mon Sep 17 00:00:00 2001 From: Luiz Ribeiro Date: Tue, 7 Dec 2021 22:16:59 -0600 Subject: [PATCH 182/278] telegraf: 1.20.3 -> 1.20.4 --- pkgs/servers/monitoring/telegraf/default.nix | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/pkgs/servers/monitoring/telegraf/default.nix b/pkgs/servers/monitoring/telegraf/default.nix index d640d956bd38..12b124b78415 100644 --- a/pkgs/servers/monitoring/telegraf/default.nix +++ b/pkgs/servers/monitoring/telegraf/default.nix @@ -1,8 +1,8 @@ -{ lib, buildGoModule, fetchFromGitHub, nixosTests }: +{ lib, buildGo117Module, fetchFromGitHub, nixosTests }: -buildGoModule rec { +buildGo117Module rec { pname = "telegraf"; - version = "1.20.3"; + version = "1.20.4"; excludedPackages = "test"; @@ -12,10 +12,10 @@ buildGoModule rec { owner = "influxdata"; repo = "telegraf"; rev = "v${version}"; - sha256 = "sha256-KziXTuj1J3pXJIACiF09En3rRt1BYixj/jAadyaz4ns="; + sha256 = "sha256-AK2KCbwFHeryqdK7iYtKEaP8JYINdX1i42/EHCAGkFk="; }; - vendorSha256 = "sha256-4L65JT+5GRS7KszuwKdveOlJIrOptPomDuyQ/r434cc="; + vendorSha256 = "sha256-35jcieU/EdJ3d4WfYhwXpDNZRrS+DQsWZYp2EoxpKU4"; proxyVendor = true; ldflags = [ From 0c9716ad3c531ec0537dc0c97e75775e647ef95c Mon Sep 17 00:00:00 2001 From: John Ericson Date: Wed, 8 Dec 2021 00:11:18 -0500 Subject: [PATCH 183/278] llvmPackages: Make sure we can attempt to cross-compile the tools --- pkgs/top-level/all-packages.nix | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 1d032db17d97..5a2a34d67270 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -12513,31 +12513,31 @@ with pkgs; llvmPackages_5 = recurseIntoAttrs (callPackage ../development/compilers/llvm/5 { inherit (stdenvAdapters) overrideCC; buildLlvmTools = buildPackages.llvmPackages_5.tools; - targetLlvmLibraries = targetPackages.llvmPackages_5.libraries; + targetLlvmLibraries = targetPackages.llvmPackages_5.libraries or llvmPackages_5.libraries; }); llvmPackages_6 = recurseIntoAttrs (callPackage ../development/compilers/llvm/6 { inherit (stdenvAdapters) overrideCC; buildLlvmTools = buildPackages.llvmPackages_6.tools; - targetLlvmLibraries = targetPackages.llvmPackages_6.libraries; + targetLlvmLibraries = targetPackages.llvmPackages_6.libraries or llvmPackages_6.libraries; }); llvmPackages_7 = recurseIntoAttrs (callPackage ../development/compilers/llvm/7 { inherit (stdenvAdapters) overrideCC; buildLlvmTools = buildPackages.llvmPackages_7.tools; - targetLlvmLibraries = targetPackages.llvmPackages_7.libraries; + targetLlvmLibraries = targetPackages.llvmPackages_7.libraries or llvmPackages_7.libraries; }); llvmPackages_8 = recurseIntoAttrs (callPackage ../development/compilers/llvm/8 { inherit (stdenvAdapters) overrideCC; buildLlvmTools = buildPackages.llvmPackages_8.tools; - targetLlvmLibraries = targetPackages.llvmPackages_8.libraries; + targetLlvmLibraries = targetPackages.llvmPackages_8.libraries or llvmPackages_8.libraries; }); llvmPackages_9 = recurseIntoAttrs (callPackage ../development/compilers/llvm/9 { inherit (stdenvAdapters) overrideCC; buildLlvmTools = buildPackages.llvmPackages_9.tools; - targetLlvmLibraries = targetPackages.llvmPackages_9.libraries; + targetLlvmLibraries = targetPackages.llvmPackages_9.libraries or llvmPackages_9.libraries; }); llvmPackages_10 = recurseIntoAttrs (callPackage ../development/compilers/llvm/10 { @@ -12549,7 +12549,7 @@ with pkgs; llvmPackages_11 = recurseIntoAttrs (callPackage ../development/compilers/llvm/11 ({ inherit (stdenvAdapters) overrideCC; buildLlvmTools = buildPackages.llvmPackages_11.tools; - targetLlvmLibraries = targetPackages.llvmPackages_11.libraries; + targetLlvmLibraries = targetPackages.llvmPackages_11.libraries or llvmPackages_11.libraries; } // lib.optionalAttrs (stdenv.hostPlatform.isi686 && buildPackages.stdenv.cc.isGNU) { stdenv = gcc7Stdenv; })); @@ -12557,7 +12557,7 @@ with pkgs; llvmPackages_12 = recurseIntoAttrs (callPackage ../development/compilers/llvm/12 ({ inherit (stdenvAdapters) overrideCC; buildLlvmTools = buildPackages.llvmPackages_12.tools; - targetLlvmLibraries = targetPackages.llvmPackages_12.libraries; + targetLlvmLibraries = targetPackages.llvmPackages_12.libraries or llvmPackages_12.libraries; } // lib.optionalAttrs (stdenv.hostPlatform.isi686 && buildPackages.stdenv.cc.isGNU) { stdenv = gcc7Stdenv; })); @@ -12565,7 +12565,7 @@ with pkgs; llvmPackages_13 = recurseIntoAttrs (callPackage ../development/compilers/llvm/13 ({ inherit (stdenvAdapters) overrideCC; buildLlvmTools = buildPackages.llvmPackages_13.tools; - targetLlvmLibraries = targetPackages.llvmPackages_13.libraries; + targetLlvmLibraries = targetPackages.llvmPackages_13.libraries or llvmPackages_13.libraries; } // lib.optionalAttrs (stdenv.hostPlatform.isi686 && buildPackages.stdenv.cc.isGNU) { stdenv = gcc7Stdenv; })); From 913a1014a4aaa6682bf863b56d54c5f01b0e23f9 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 05:23:20 +0000 Subject: [PATCH 184/278] psi-plus: 1.5.1576 -> 1.5.1582 --- .../networking/instant-messengers/psi-plus/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/applications/networking/instant-messengers/psi-plus/default.nix b/pkgs/applications/networking/instant-messengers/psi-plus/default.nix index b8ee5182c26b..5344e5204801 100644 --- a/pkgs/applications/networking/instant-messengers/psi-plus/default.nix +++ b/pkgs/applications/networking/instant-messengers/psi-plus/default.nix @@ -42,13 +42,13 @@ assert enablePsiMedia -> enablePlugins; mkDerivation rec { pname = "psi-plus"; - version = "1.5.1576"; + version = "1.5.1582"; src = fetchFromGitHub { owner = "psi-plus"; repo = "psi-plus-snapshots"; rev = version; - sha256 = "15iqa8hd4p968sp79zsi32g7bhamgg267pk2bxspl646viv91f6g"; + sha256 = "sha256-ZMJxGxwDuY2fW+W68JiH0X+FpowdAPm70EQ9pHNnrG4="; }; cmakeFlags = [ From 452f9ac4e72f8620e3616a433b1484e074cfe6a5 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 05:29:43 +0000 Subject: [PATCH 185/278] php74Extensions.couchbase: 3.2.0 -> 3.2.1 --- pkgs/development/php-packages/couchbase/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/php-packages/couchbase/default.nix b/pkgs/development/php-packages/couchbase/default.nix index 18513945bf99..1b90e71fd209 100644 --- a/pkgs/development/php-packages/couchbase/default.nix +++ b/pkgs/development/php-packages/couchbase/default.nix @@ -1,7 +1,7 @@ { lib, buildPecl, fetchFromGitHub, writeText, libcouchbase, zlib, php, substituteAll }: let pname = "couchbase"; - version = "3.2.0"; + version = "3.2.1"; in buildPecl { inherit pname version; @@ -10,7 +10,7 @@ buildPecl { owner = "couchbase"; repo = "php-couchbase"; rev = "v${version}"; - sha256 = "sha256-rvlyH28xWLIVwK3yqqdhkoD1h6kl8FDq3Byo7mhV3jM="; + sha256 = "sha256-Ti1jo1do0xiY/FAfyG/YI/TTcgFTMWy8cuhorDodUko="; }; configureFlags = [ "--with-couchbase" ]; From f7cbc57cd9f83eecc8bda7b7a6e0ffe432d42a09 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 05:31:39 +0000 Subject: [PATCH 186/278] dconf2nix: 0.0.8 -> 0.0.10 --- pkgs/development/tools/haskell/dconf2nix/dconf2nix.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/development/tools/haskell/dconf2nix/dconf2nix.nix b/pkgs/development/tools/haskell/dconf2nix/dconf2nix.nix index 3ebbc9b03396..890ea6cef616 100644 --- a/pkgs/development/tools/haskell/dconf2nix/dconf2nix.nix +++ b/pkgs/development/tools/haskell/dconf2nix/dconf2nix.nix @@ -3,11 +3,11 @@ }: mkDerivation { pname = "dconf2nix"; - version = "0.0.8"; + version = "0.0.10"; src = fetchgit { url = "https://github.com/gvolpe/dconf2nix.git"; - sha256 = "19jk3p0ys3lbqk21lm37a7alkg2vhnmkvcffjqfxrw8p4737hxid"; - rev = "6bf3d7d4ca9f553a9e1ba4a70a65640114d230b2"; + sha256 = "0ddjgd97nhcbdkry3668mnjb0kbkklzab7zr12km3p8fv99xzva4"; + rev = "629faff2deb6a1131c67e241b688000f859dac48"; fetchSubmodules = true; }; isLibrary = true; From 17d7c20a493709c09df5eee7810119decf9cdb90 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 05:43:34 +0000 Subject: [PATCH 187/278] php74Extensions.mongodb: 1.9.1 -> 1.11.1 --- pkgs/development/php-packages/mongodb/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/php-packages/mongodb/default.nix b/pkgs/development/php-packages/mongodb/default.nix index b65862750e72..7e34d875905f 100644 --- a/pkgs/development/php-packages/mongodb/default.nix +++ b/pkgs/development/php-packages/mongodb/default.nix @@ -14,8 +14,8 @@ buildPecl { pname = "mongodb"; - version = "1.9.1"; - sha256 = "1mzyssy2a89grw7rwmh0x22lql377nmnqlcv9piam1c32qiwxlg9"; + version = "1.11.1"; + sha256 = "sha256-g4pQUN5Q1R+VkCa9jOxzSdivNwWMD+BylaC8lgqC1+8="; nativeBuildInputs = [ pkg-config ]; buildInputs = [ From c9a8ebe3756011d6887ee4ec86290344a1e5436e Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 05:55:03 +0000 Subject: [PATCH 188/278] php74Extensions.pcov: 1.0.9 -> 1.0.10 --- pkgs/development/php-packages/pcov/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/php-packages/pcov/default.nix b/pkgs/development/php-packages/pcov/default.nix index f0e3e75c71c3..a6905f0daee1 100644 --- a/pkgs/development/php-packages/pcov/default.nix +++ b/pkgs/development/php-packages/pcov/default.nix @@ -3,8 +3,8 @@ buildPecl { pname = "pcov"; - version = "1.0.9"; - sha256 = "0q2ig5lxzpwz3qgr05wcyh5jzhfxlygkv6nj6jagkhiialng2710"; + version = "1.0.10"; + sha256 = "sha256-M0oPauqLPNR8QmcGHxR9MDP9rd0vj2iLMj6Wlm2a+Zw="; buildInputs = [ pcre2 ]; From 65bbefdaa78ffa4dff1b4e4b9b0c379725c1b25b Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 06:00:27 +0000 Subject: [PATCH 189/278] php74Extensions.igbinary: 3.2.3 -> 3.2.6 --- pkgs/development/php-packages/igbinary/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/php-packages/igbinary/default.nix b/pkgs/development/php-packages/igbinary/default.nix index 258b0debbae0..886f75ecc9f3 100644 --- a/pkgs/development/php-packages/igbinary/default.nix +++ b/pkgs/development/php-packages/igbinary/default.nix @@ -3,8 +3,8 @@ buildPecl { pname = "igbinary"; - version = "3.2.3"; - sha256 = "1ffaqhckkk1qr5dk1fl7f8dm2w4lj4gqrgazzmc67acsdmp7z5f0"; + version = "3.2.6"; + sha256 = "sha256-yjLjlezbREemnV6lGzX+sZw7xXWbRolv729+LKQajkM="; configureFlags = [ "--enable-igbinary" ]; makeFlags = [ "phpincludedir=$(dev)/include" ]; From 0a03fe6802c18ba722c60cd898a5845c7619cda1 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 06:17:37 +0000 Subject: [PATCH 190/278] protonmail-bridge: 1.8.7 -> 1.8.10 --- pkgs/applications/networking/protonmail-bridge/default.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/applications/networking/protonmail-bridge/default.nix b/pkgs/applications/networking/protonmail-bridge/default.nix index c15720ffc380..49e4bd01e423 100644 --- a/pkgs/applications/networking/protonmail-bridge/default.nix +++ b/pkgs/applications/networking/protonmail-bridge/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "protonmail-bridge"; - version = "1.8.7"; + version = "1.8.10"; src = fetchFromGitHub { owner = "ProtonMail"; repo = "proton-bridge"; rev = "br-${version}"; - sha256 = "sha256-bynPuAdeX4WxYdbjMkR9ANuYWYOINB0OHnKTmIrCB6E="; + sha256 = "sha256-T6pFfGKG4VNcZ6EYEU5A5V91PlZZDylTNSNbah/pwS4="; }; - vendorSha256 = "sha256-g2vl1Ctxr2U+D/k9u9oXuZ1OWaABIJs0gmfhWh13ZFM="; + vendorSha256 = "sha256-hRGedgdQlky9UBqsVTSbgAgii1skF/MA21ZQ0+goaM4="; nativeBuildInputs = [ pkg-config ]; From 13e2f5c8e04e5e49f45ce8e08fed8530d9a707b6 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 06:26:56 +0000 Subject: [PATCH 191/278] php74Extensions.yaml: 2.2.1 -> 2.2.2 --- pkgs/development/php-packages/yaml/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/php-packages/yaml/default.nix b/pkgs/development/php-packages/yaml/default.nix index ef58b315faee..d4803c9d21ac 100644 --- a/pkgs/development/php-packages/yaml/default.nix +++ b/pkgs/development/php-packages/yaml/default.nix @@ -3,8 +3,8 @@ buildPecl { pname = "yaml"; - version = "2.2.1"; - sha256 = "sha256-4XrQTnUuJf0Jm93S350m3+8YPI0AxBebydei4cl9eBk="; + version = "2.2.2"; + sha256 = "sha256-EZBS8EYdV9hvRMJS+cmy3XQ0hscBwaCroK6+zdDYuCo="; configureFlags = [ "--with-yaml=${libyaml}" ]; From 0ef8a922bfd0195625bc3e5211ea436a7e833b37 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 06:36:01 +0000 Subject: [PATCH 192/278] postgresql11Packages.pgrouting: 3.2.1 -> 3.3.0 --- pkgs/servers/sql/postgresql/ext/pgrouting.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/servers/sql/postgresql/ext/pgrouting.nix b/pkgs/servers/sql/postgresql/ext/pgrouting.nix index 36d44c82c9dc..f75fbe7137a4 100644 --- a/pkgs/servers/sql/postgresql/ext/pgrouting.nix +++ b/pkgs/servers/sql/postgresql/ext/pgrouting.nix @@ -2,7 +2,7 @@ stdenv.mkDerivation rec { pname = "pgrouting"; - version = "3.2.1"; + version = "3.3.0"; nativeBuildInputs = [ cmake perl ]; buildInputs = [ postgresql boost ]; @@ -11,7 +11,7 @@ stdenv.mkDerivation rec { owner = "pgRouting"; repo = pname; rev = "v${version}"; - sha256 = "1zn3yyp4zz14yn2mmqwn7c4m65zfb2nj9zg4qj97ppsahs5xc6vw"; + sha256 = "sha256-GWufuOsAYLIOy5MXYVNFWVeVdLntd5ZeUnSdEahlkak="; }; installPhase = '' From 089ce59f6cedee228493131be2edba2efb55cbcf Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 06:49:46 +0000 Subject: [PATCH 193/278] php74Extensions.xdebug: 3.0.4 -> 3.1.2 --- pkgs/development/php-packages/xdebug/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/php-packages/xdebug/default.nix b/pkgs/development/php-packages/xdebug/default.nix index 43387380ddac..a7a710b3193e 100644 --- a/pkgs/development/php-packages/xdebug/default.nix +++ b/pkgs/development/php-packages/xdebug/default.nix @@ -3,8 +3,8 @@ buildPecl { pname = "xdebug"; - version = "3.0.4"; - sha256 = "1bvjmnx9bcfq4ikp02kiqg0f7ccgx4mkmz5d7g6v0d263x4r0wmj"; + version = "3.1.2"; + sha256 = "sha256-CD9r4RAN95zL3wSdr8OTC6s18OuA+bGawa2E+md5zPM="; doCheck = true; checkTarget = "test"; From 0301f18dfff9f59e537258fdb273905843f396c1 Mon Sep 17 00:00:00 2001 From: zowoq <59103226+zowoq@users.noreply.github.com> Date: Wed, 8 Dec 2021 06:26:23 +1000 Subject: [PATCH 194/278] podman: 3.4.2 -> 3.4.3 https://github.com/containers/podman/releases/tag/v3.4.3 --- pkgs/applications/virtualization/podman/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/applications/virtualization/podman/default.nix b/pkgs/applications/virtualization/podman/default.nix index 0f12d11cc381..235578b965c2 100644 --- a/pkgs/applications/virtualization/podman/default.nix +++ b/pkgs/applications/virtualization/podman/default.nix @@ -17,13 +17,13 @@ buildGoModule rec { pname = "podman"; - version = "3.4.2"; + version = "3.4.3"; src = fetchFromGitHub { owner = "containers"; repo = "podman"; rev = "v${version}"; - sha256 = "sha256-VkKFlOm5r+a9+4em1oisjXNwK9mCCCPViql6g0O7PWw="; + sha256 = "sha256-SZHonZdUTJisFMjvUBst1HErvKWEcYZYhK++G+S4sEg="; }; vendorSha256 = null; From 39f695ffefb2317f575e2d3885d4880398bfe4e1 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 06:58:24 +0000 Subject: [PATCH 195/278] pfstools: 2.1.0 -> 2.2.0 --- pkgs/tools/graphics/pfstools/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/tools/graphics/pfstools/default.nix b/pkgs/tools/graphics/pfstools/default.nix index a81321204757..d815b6ac83e2 100644 --- a/pkgs/tools/graphics/pfstools/default.nix +++ b/pkgs/tools/graphics/pfstools/default.nix @@ -6,11 +6,11 @@ mkDerivation rec { pname = "pfstools"; - version = "2.1.0"; + version = "2.2.0"; src = fetchurl { url = "mirror://sourceforge/${pname}/${version}/${pname}-${version}.tgz"; - sha256 = "04rlb705gmdiphcybf9dyr0d5lla2cfs3c308zz37x0vwi445six"; + sha256 = "sha256-m/aESYVmMibCGZjutDwmGsuOSziRuakbcpVUQGKJ18o="; }; outputs = [ "out" "dev" "man"]; From 823279a78606b39fa62a6428c2defb8c5ddab6f7 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 07:04:25 +0000 Subject: [PATCH 196/278] php74Extensions.maxminddb: 1.10.1 -> 1.11.0 --- pkgs/development/php-packages/maxminddb/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/php-packages/maxminddb/default.nix b/pkgs/development/php-packages/maxminddb/default.nix index eae232b6c017..852a86a7b178 100644 --- a/pkgs/development/php-packages/maxminddb/default.nix +++ b/pkgs/development/php-packages/maxminddb/default.nix @@ -1,7 +1,7 @@ { buildPecl, lib, fetchFromGitHub, libmaxminddb }: let pname = "maxminddb"; - version = "1.10.1"; + version = "1.11.0"; in buildPecl { inherit pname version; @@ -10,7 +10,7 @@ buildPecl { owner = "maxmind"; repo = "MaxMind-DB-Reader-php"; rev = "v${version}"; - sha256 = "1m5y733x4ykldi1pym54mdahfwfnwy2r1n6fnndwi8jz9px9pa5k"; + sha256 = "sha256-Dw1+pYJmZ3U2+rgSOEkx4a6HB8FebSr7YZodOjSipjI="; }; buildInputs = [ libmaxminddb ]; From 8474bbde7480d3e284f6c7c39004610ea6370566 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 07:04:55 +0000 Subject: [PATCH 197/278] firefox-esr-91-unwrapped: 91.3.0esr -> 91.4.0esr --- pkgs/applications/networking/browsers/firefox/packages.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/applications/networking/browsers/firefox/packages.nix b/pkgs/applications/networking/browsers/firefox/packages.nix index 5923a967e720..c9a6a992cda6 100644 --- a/pkgs/applications/networking/browsers/firefox/packages.nix +++ b/pkgs/applications/networking/browsers/firefox/packages.nix @@ -32,10 +32,10 @@ rec { firefox-esr-91 = common rec { pname = "firefox-esr"; - version = "91.3.0esr"; + version = "91.4.0esr"; src = fetchurl { url = "mirror://mozilla/firefox/releases/${version}/source/firefox-${version}.source.tar.xz"; - sha512 = "7cf6efd165acc134bf576715580c103a2fc10ab928ede4c18f69908c62a04eb0f60affa8ceafd5883b393c31b85cae6821d0ae063c9e78117456d475947deaa9"; + sha512 = "781bf62a0e1215cad7d90de7c822978997bfeaf71bde4e7124a732921d130762c6654417c708a299726039d1603ff5e0796106118ad4b2ddef4e9dac84887765"; }; meta = { From 9770ffd76652beb7173deebd45bc67e32550dea3 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 07:10:54 +0000 Subject: [PATCH 198/278] python38Packages.hyppo: 0.2.1 -> 0.2.2 --- pkgs/development/python-modules/hyppo/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/python-modules/hyppo/default.nix b/pkgs/development/python-modules/hyppo/default.nix index 8dcca1983ba3..2364556cfecf 100644 --- a/pkgs/development/python-modules/hyppo/default.nix +++ b/pkgs/development/python-modules/hyppo/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "hyppo"; - version = "0.2.1"; + version = "0.2.2"; disabled = isPy27; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "neurodata"; repo = pname; rev = "v${version}"; - sha256 = "0izjc68rb6sr3x55c3zzraakzspgzh80qykfax9zj868zypfm365"; + sha256 = "1wrzrppyjq0pc03bn6qcslxzcnwn7fr2z5lm71gfpli5k05i26nr"; }; propagatedBuildInputs = [ From 1f8ee144f9a67a30f7fc50d031dd98a647da824f Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 07:28:14 +0000 Subject: [PATCH 199/278] postgresql11Packages.plpgsql_check: 2.0.5 -> 2.0.6 --- pkgs/servers/sql/postgresql/ext/plpgsql_check.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/servers/sql/postgresql/ext/plpgsql_check.nix b/pkgs/servers/sql/postgresql/ext/plpgsql_check.nix index 4de703ccded8..eb04a473d250 100644 --- a/pkgs/servers/sql/postgresql/ext/plpgsql_check.nix +++ b/pkgs/servers/sql/postgresql/ext/plpgsql_check.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "plpgsql_check"; - version = "2.0.5"; + version = "2.0.6"; src = fetchFromGitHub { owner = "okbob"; repo = pname; rev = "v${version}"; - sha256 = "1n5csi0lxghlrhyk1wz45a95ikzblkvc5r7pb7jqq3cpk110biy4"; + sha256 = "sha256-M/kvfGhB2s8TvmpL7KihorVTOfwp7HmKka4IAgnIQ6M="; }; buildInputs = [ postgresql ]; From 43df7a5af099aba9be4f00b79b8a4bff8aa71874 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 07:33:28 +0000 Subject: [PATCH 200/278] php74Extensions.event: 3.0.5 -> 3.0.6 --- pkgs/development/php-packages/event/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/php-packages/event/default.nix b/pkgs/development/php-packages/event/default.nix index ed23bcc4b0b6..f10b474f7b1b 100644 --- a/pkgs/development/php-packages/event/default.nix +++ b/pkgs/development/php-packages/event/default.nix @@ -2,8 +2,8 @@ buildPecl { pname = "event"; - version = "3.0.5"; - sha256 = "0q5a83mcl97cyry5rd85j5xsjvflnki6s5cm56igjm0szxvgj39c"; + version = "3.0.6"; + sha256 = "sha256-BN43wydPQBCVla29YoPqKSVihSZCkLAIgDZb+CNQecw="; configureFlags = [ "--with-event-libevent-dir=${libevent.dev}" From ce7e5f36325cee8f2294b556048654bd537b7020 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 07:33:42 +0000 Subject: [PATCH 201/278] gitRepo: 2.18 -> 2.19 --- pkgs/applications/version-management/git-repo/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/applications/version-management/git-repo/default.nix b/pkgs/applications/version-management/git-repo/default.nix index 276ce92f40e1..bc496cbbaaee 100644 --- a/pkgs/applications/version-management/git-repo/default.nix +++ b/pkgs/applications/version-management/git-repo/default.nix @@ -4,13 +4,13 @@ stdenv.mkDerivation rec { pname = "git-repo"; - version = "2.18"; + version = "2.19"; src = fetchFromGitHub { owner = "android"; repo = "tools_repo"; rev = "v${version}"; - sha256 = "sha256-eW+FjTsTWzHxyNlsP5dvV3TFtEz4cLWwyF4bmqsDW2k="; + sha256 = "sha256-aJnerKeZobgw3e4s7D7de7/nP6vwymLpeKnrLmPzDow="; }; # Fix 'NameError: name 'ssl' is not defined' From 202e44f6750ff1e972896e695088245653f8d776 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Mon, 6 Dec 2021 22:27:10 +0000 Subject: [PATCH 202/278] python38Packages.django-csp: 3.5 -> 3.7 --- pkgs/development/python-modules/django-csp/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/python-modules/django-csp/default.nix b/pkgs/development/python-modules/django-csp/default.nix index 1f7b28114054..c54583447671 100644 --- a/pkgs/development/python-modules/django-csp/default.nix +++ b/pkgs/development/python-modules/django-csp/default.nix @@ -2,12 +2,12 @@ buildPythonPackage rec { pname = "django-csp"; - version = "3.5"; + version = "3.7"; src = fetchPypi { inherit version; pname = "django_csp"; - sha256 = "0ks4zszbjx5lyqlc34pjica8hfcjzw4i5m6pivvnyv8yf0vh4q04"; + sha256 = "01eda02ad3f10261c74131cdc0b5a6a62b7c7ad4fd017fbefb7a14776e0a9727"; }; # too complicated to setup - needs a running django instance From f328fd0ce522b009f9adfc6c2fbab67d6cb1e306 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Mon, 6 Dec 2021 22:50:31 +0000 Subject: [PATCH 203/278] python38Packages.djangorestframework-simplejwt: 4.8.0 -> 5.0.0 --- .../python-modules/djangorestframework-simplejwt/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/python-modules/djangorestframework-simplejwt/default.nix b/pkgs/development/python-modules/djangorestframework-simplejwt/default.nix index 6c54f3ded292..4c616bdeb274 100644 --- a/pkgs/development/python-modules/djangorestframework-simplejwt/default.nix +++ b/pkgs/development/python-modules/djangorestframework-simplejwt/default.nix @@ -10,12 +10,12 @@ buildPythonPackage rec { pname = "djangorestframework-simplejwt"; - version = "4.8.0"; + version = "5.0.0"; src = fetchPypi { pname = "djangorestframework_simplejwt"; inherit version; - sha256 = "153c973c5c154baf566be431de8527c2bd62557fde7373ebcb0f02b73b28e07a"; + sha256 = "30b10e7732395c44d21980f773214d2b9bdeadf2a6c6809cd1a7c9abe272873c"; }; nativeBuildInputs = [ From 6315ad6346b1a21172a3d8ed536d7ca9a4236ba0 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Mon, 6 Dec 2021 23:14:52 +0000 Subject: [PATCH 204/278] python38Packages.eggdeps: 0.4 -> 1.0 --- pkgs/development/python-modules/eggdeps/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/python-modules/eggdeps/default.nix b/pkgs/development/python-modules/eggdeps/default.nix index 02c2c6444493..9f17306b7bdc 100644 --- a/pkgs/development/python-modules/eggdeps/default.nix +++ b/pkgs/development/python-modules/eggdeps/default.nix @@ -7,12 +7,12 @@ buildPythonPackage rec { pname = "tl-eggdeps"; - version = "0.4"; + version = "1.0"; src = fetchPypi { inherit version; pname = "tl.eggdeps"; - sha256 = "a99de5e4652865224daab09b2e2574a4f7c1d0d9a267048f9836aa914a2caf3a"; + sha256 = "a094ed7961a3dd38fcaaa69cf7a58670038acdff186360166d9e3d964b7a7323"; }; propagatedBuildInputs = [ zope_interface zope_testing ]; From 63cdf83699bd72a67ab7aa758369a40676be2914 Mon Sep 17 00:00:00 2001 From: Fabian Affolter Date: Thu, 2 Dec 2021 22:31:19 +0100 Subject: [PATCH 205/278] python3Packages.potentials: 0.3.1 -> 0.3.2 --- pkgs/development/python-modules/potentials/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/python-modules/potentials/default.nix b/pkgs/development/python-modules/potentials/default.nix index ea7fc4654284..f3542c13972e 100644 --- a/pkgs/development/python-modules/potentials/default.nix +++ b/pkgs/development/python-modules/potentials/default.nix @@ -19,7 +19,7 @@ }: buildPythonPackage rec { - version = "0.3.1"; + version = "0.3.2"; pname = "potentials"; format = "setuptools"; @@ -27,7 +27,7 @@ buildPythonPackage rec { src = fetchPypi { inherit pname version; - sha256 = "02l1rav5jdfsb00byxbswyhqdnjljp9y7g4ddn4mivzi7x39qa52"; + sha256 = "sha256-u++ClAAc96u7k8w756sFR4oCtIOgERQ7foklxWWPprY="; }; propagatedBuildInputs = [ From 5103e78f95e04676f7d59204472840f14c7420a0 Mon Sep 17 00:00:00 2001 From: Fabian Affolter Date: Sun, 5 Dec 2021 09:57:05 +0100 Subject: [PATCH 206/278] python3Packages.atomman: 1.4.2 -> 1.4.3 --- pkgs/development/python-modules/atomman/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/python-modules/atomman/default.nix b/pkgs/development/python-modules/atomman/default.nix index 8e03dbe67af7..7f5b08fd4fe3 100644 --- a/pkgs/development/python-modules/atomman/default.nix +++ b/pkgs/development/python-modules/atomman/default.nix @@ -17,7 +17,7 @@ }: buildPythonPackage rec { - version = "1.4.2"; + version = "1.4.3"; pname = "atomman"; format = "setuptools"; @@ -27,7 +27,7 @@ buildPythonPackage rec { owner = "usnistgov"; repo = "atomman"; rev = "v${version}"; - sha256 = "sha256-Kq4mDykYf74ylWw2golxc81CYKGokXro64YUsFctLmk="; + sha256 = "sha256-is47O59Pjrh9tPC1Y2+DVVcHbxmcjUOFOVGnNHuURoM="; }; propagatedBuildInputs = [ From 2b6facfed201666453c1ca147d6b82747fe7c9b8 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Tue, 7 Dec 2021 23:41:02 +0000 Subject: [PATCH 207/278] python38Packages.zigpy-znp: 0.6.1 -> 0.6.4 --- pkgs/development/python-modules/zigpy-znp/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/python-modules/zigpy-znp/default.nix b/pkgs/development/python-modules/zigpy-znp/default.nix index 74295782a4a6..8a3bd0e41fd2 100644 --- a/pkgs/development/python-modules/zigpy-znp/default.nix +++ b/pkgs/development/python-modules/zigpy-znp/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { pname = "zigpy-znp"; - version = "0.6.1"; + version = "0.6.4"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -27,7 +27,7 @@ buildPythonPackage rec { owner = "zigpy"; repo = pname; rev = "v${version}"; - sha256 = "sha256-Dj8gduDyE3JpcNwzXmDjZLbX0QmUQmptuAKRBQJkdaA="; + sha256 = "0hz483wqzpdaap96gbjasisxd4wy8f4lslnspcvzqcf4dy1mxln6"; }; propagatedBuildInputs = [ From 4a7ba4621b1a86daf5c6e71542c673542fb4c62a Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 06:03:28 +0000 Subject: [PATCH 208/278] evolution: 3.42.1 -> 3.42.2 --- .../networking/mailreaders/evolution/evolution/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/applications/networking/mailreaders/evolution/evolution/default.nix b/pkgs/applications/networking/mailreaders/evolution/evolution/default.nix index 34b25c17a254..3ccf066831c1 100644 --- a/pkgs/applications/networking/mailreaders/evolution/evolution/default.nix +++ b/pkgs/applications/networking/mailreaders/evolution/evolution/default.nix @@ -42,11 +42,11 @@ stdenv.mkDerivation rec { pname = "evolution"; - version = "3.42.1"; + version = "3.42.2"; src = fetchurl { url = "mirror://gnome/sources/evolution/${lib.versions.majorMinor version}/${pname}-${version}.tar.xz"; - sha256 = "RlMq46E6aIV3GtEiNLlBQRZ67HRyOn7tE9293a767kU="; + sha256 = "C+QT8W3WjsjUNCpPJpVlryp0oZpb+hxcv2Y1I6W1ujg="; }; nativeBuildInputs = [ From f6e3fb9e9df2e13dd744e2664066867e14e004df Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 07:54:17 +0000 Subject: [PATCH 209/278] petsc: 3.14.3 -> 3.16.1 --- pkgs/development/libraries/science/math/petsc/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/libraries/science/math/petsc/default.nix b/pkgs/development/libraries/science/math/petsc/default.nix index 1bffb41806c5..4ac72013eb37 100644 --- a/pkgs/development/libraries/science/math/petsc/default.nix +++ b/pkgs/development/libraries/science/math/petsc/default.nix @@ -18,11 +18,11 @@ assert petsc-withp4est -> p4est.mpiSupport; stdenv.mkDerivation rec { pname = "petsc"; - version = "3.14.3"; + version = "3.16.1"; src = fetchurl { url = "http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-${version}.tar.gz"; - sha256 = "sha256-1rdyLNSH8jMkmIg88uHMN3ZXqTHAtzU1adybJEZzJ9M="; + sha256 = "sha256-kJz3vOe2oN2yWAoayVAqoBYx7EEFxxZZTBgE8O4eoGo="; }; mpiSupport = !withp4est || p4est.mpiSupport; From 81272244aa1f4540a355b82658751e5576c649aa Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 08:10:36 +0000 Subject: [PATCH 210/278] pmd: 6.30.0 -> 6.41.0 --- pkgs/development/tools/analysis/pmd/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/tools/analysis/pmd/default.nix b/pkgs/development/tools/analysis/pmd/default.nix index 3aa37d650cb2..64ab4a315de1 100644 --- a/pkgs/development/tools/analysis/pmd/default.nix +++ b/pkgs/development/tools/analysis/pmd/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "pmd"; - version = "6.30.0"; + version = "6.41.0"; src = fetchurl { url = "mirror://sourceforge/pmd/pmd-bin-${version}.zip"; - sha256 = "sha256-LgQmoUdsG5sAyHs9YyiaOFonMFaVtHKdp/KvSAWSy8w="; + sha256 = "sha256-kXyUukqLFIdaBpO+oimyrzmGm6bNwoQaRDIoMtZq45k="; }; nativeBuildInputs = [ unzip makeWrapper ]; From f1ca35a6aaab5a18bdba3f1f304d6b83b24bfe17 Mon Sep 17 00:00:00 2001 From: Nikolay Korotkiy Date: Wed, 8 Dec 2021 11:19:29 +0300 Subject: [PATCH 211/278] =?UTF-8?q?gpxsee:=209.12=20=E2=86=92=2010.0?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- pkgs/applications/misc/gpxsee/default.nix | 12 +++++++----- 1 file changed, 7 insertions(+), 5 deletions(-) diff --git a/pkgs/applications/misc/gpxsee/default.nix b/pkgs/applications/misc/gpxsee/default.nix index 84651b78121a..277cb2475952 100644 --- a/pkgs/applications/misc/gpxsee/default.nix +++ b/pkgs/applications/misc/gpxsee/default.nix @@ -1,14 +1,14 @@ -{ lib, stdenv, mkDerivation, fetchFromGitHub, qmake, qttools, qttranslations, substituteAll }: +{ lib, stdenv, fetchFromGitHub, qmake, qttools, qttranslations, qtlocation, wrapQtAppsHook, substituteAll }: -mkDerivation rec { +stdenv.mkDerivation rec { pname = "gpxsee"; - version = "9.12"; + version = "10.0"; src = fetchFromGitHub { owner = "tumic0"; repo = "GPXSee"; rev = version; - sha256 = "sha256-hIDphwmS4UNSTvE+Icupipo6AmT2fiPdaufT/I3EeJ4="; + sha256 = "sha256-XACexj91TLd/i2GoFr0zZ3Yqcg+KjKoWWPfCGsEIR04="; }; patches = (substituteAll { @@ -17,7 +17,9 @@ mkDerivation rec { inherit qttranslations; }); - nativeBuildInputs = [ qmake qttools ]; + buildInputs = [ qtlocation ]; + + nativeBuildInputs = [ qmake qttools wrapQtAppsHook ]; preConfigure = '' lrelease gpxsee.pro From 1540a5115f8f221cc824be699a7b5771d5b77435 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 08:01:45 +0000 Subject: [PATCH 212/278] gnome.gnome-calculator: 41.0 -> 41.1 --- pkgs/desktops/gnome/core/gnome-calculator/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/desktops/gnome/core/gnome-calculator/default.nix b/pkgs/desktops/gnome/core/gnome-calculator/default.nix index 58c079078d64..6a7a8ccec06b 100644 --- a/pkgs/desktops/gnome/core/gnome-calculator/default.nix +++ b/pkgs/desktops/gnome/core/gnome-calculator/default.nix @@ -26,11 +26,11 @@ stdenv.mkDerivation rec { pname = "gnome-calculator"; - version = "41.0"; + version = "41.1"; src = fetchurl { url = "mirror://gnome/sources/gnome-calculator/${lib.versions.major version}/${pname}-${version}.tar.xz"; - sha256 = "pm3AS9hYfnbWc3Wmrvp5VTtWnJvfeOvcKBfxwK3j3Jk="; + sha256 = "AmdhSv2yXTi3hBG0Lrq3vFDBtjQMxJu2jA5DLX3fijQ="; }; nativeBuildInputs = [ From 9f941faeb94f68ac6577c6ab3143661ed98ab4d5 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 08:53:40 +0000 Subject: [PATCH 213/278] python38Packages.elasticsearch: 7.15.2 -> 7.16.0 --- pkgs/development/python-modules/elasticsearch/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/python-modules/elasticsearch/default.nix b/pkgs/development/python-modules/elasticsearch/default.nix index ae5d14aa4883..678c2ce6329e 100644 --- a/pkgs/development/python-modules/elasticsearch/default.nix +++ b/pkgs/development/python-modules/elasticsearch/default.nix @@ -12,11 +12,11 @@ buildPythonPackage (rec { # there's a clear path forward. See # https://github.com/elastic/elasticsearch-py/issues/1639 for more # info. - version = "7.15.2"; + version = "7.16.0"; src = fetchPypi { inherit pname version; - sha256 = "436f871848a5020bf9b47495812b229b59bd0c5d7e40adbd5e3c89896b311704"; + sha256 = "d7f8665715ad80e3e99e42388bcc49c1b06162f72acfa1f8febe2baf5570b0ed"; }; # Check is disabled because running them destroy the content of the local cluster! From 2e7a03213975e42231392794883ef4e472334f92 Mon Sep 17 00:00:00 2001 From: Dario Bertini Date: Tue, 7 Dec 2021 20:25:34 +0000 Subject: [PATCH 214/278] agg: Fix darwin build This had been broken with #136095 --- pkgs/development/libraries/agg/default.nix | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/pkgs/development/libraries/agg/default.nix b/pkgs/development/libraries/agg/default.nix index e5ce7537f250..bfa7449b04c6 100644 --- a/pkgs/development/libraries/agg/default.nix +++ b/pkgs/development/libraries/agg/default.nix @@ -32,10 +32,12 @@ stdenv.mkDerivation rec { sh autogen.sh ''; - configureFlags = lib.optionals stdenv.isLinux [ + configureFlags = [ + (lib.strings.enableFeature stdenv.isLinux "platform") + "--enable-examples=no" + ] ++ lib.optionals stdenv.isLinux [ "--x-includes=${lib.getDev libX11}/include" "--x-libraries=${lib.getLib libX11}/lib" - "--enable-examples=no" ]; # libtool --tag=CXX --mode=link g++ -g -O2 libexamples.la ../src/platform/X11/libaggplatformX11.la ../src/libagg.la -o alpha_mask2 alpha_mask2.o From fe73fe0c6e14f9bdb635c07fd7ab0f9f14caed85 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 08:22:03 +0000 Subject: [PATCH 215/278] gnome.gnome-terminal: 3.42.1 -> 3.42.2 --- pkgs/desktops/gnome/core/gnome-terminal/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/desktops/gnome/core/gnome-terminal/default.nix b/pkgs/desktops/gnome/core/gnome-terminal/default.nix index 1c905eec41b7..69fb69261f98 100644 --- a/pkgs/desktops/gnome/core/gnome-terminal/default.nix +++ b/pkgs/desktops/gnome/core/gnome-terminal/default.nix @@ -27,11 +27,11 @@ stdenv.mkDerivation rec { pname = "gnome-terminal"; - version = "3.42.1"; + version = "3.42.2"; src = fetchurl { url = "mirror://gnome/sources/gnome-terminal/${lib.versions.majorMinor version}/${pname}-${version}.tar.xz"; - sha256 = "wxmxQFUBuMdpPmFvSOztQWldLnhhSMpfnie8fZj0rrE="; + sha256 = "ipyOXvejpzskapR+EZC7COyYk1r4YM8LOqL79GBoF6A="; }; nativeBuildInputs = [ From a93106d0d2b8ad111d65eab341a2ce35cbda85a2 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 09:16:04 +0000 Subject: [PATCH 216/278] php74Extensions.swoole: 4.6.7 -> 4.8.3 --- pkgs/development/php-packages/swoole/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/php-packages/swoole/default.nix b/pkgs/development/php-packages/swoole/default.nix index a6687922bc17..411e2a3f0f0e 100644 --- a/pkgs/development/php-packages/swoole/default.nix +++ b/pkgs/development/php-packages/swoole/default.nix @@ -3,8 +3,8 @@ buildPecl { pname = "swoole"; - version = "4.6.7"; - sha256 = "107wp403z8skkqrcm240vyyy6wqx5a4v2bqhlshlknyi14r2v165"; + version = "4.8.3"; + sha256 = "sha256-Oa/SnmmMc/KZXyP/qX9BT7V1xPa4EWJa/GUNngpA4pw="; buildInputs = [ pcre2 ] ++ lib.optionals (!stdenv.isDarwin) [ valgrind ]; internalDeps = lib.optionals (lib.versionOlder php.version "7.4") [ php.extensions.hash ]; From f982bc9daf7cabf0d7ac49e20938fc4303187c5a Mon Sep 17 00:00:00 2001 From: Fabian Affolter Date: Wed, 8 Dec 2021 10:25:10 +0100 Subject: [PATCH 217/278] jsonwatch: move to tools --- .../misc}/jsonwatch/default.nix | 29 ++++++++++--------- pkgs/top-level/all-packages.nix | 4 +++ pkgs/top-level/python-packages.nix | 2 -- 3 files changed, 19 insertions(+), 16 deletions(-) rename pkgs/{development/python-modules => tools/misc}/jsonwatch/default.nix (51%) diff --git a/pkgs/development/python-modules/jsonwatch/default.nix b/pkgs/tools/misc/jsonwatch/default.nix similarity index 51% rename from pkgs/development/python-modules/jsonwatch/default.nix rename to pkgs/tools/misc/jsonwatch/default.nix index aec66d4ec4b7..3fe4f5008fd6 100644 --- a/pkgs/development/python-modules/jsonwatch/default.nix +++ b/pkgs/tools/misc/jsonwatch/default.nix @@ -1,37 +1,38 @@ { lib -, buildPythonPackage +, stdenv , fetchFromGitHub -, six -, isPyPy +, rustPlatform +, Security }: -buildPythonPackage rec { +rustPlatform.buildRustPackage rec { pname = "jsonwatch"; - version = "0.2.0"; - disabled = isPyPy; # doesn't find setuptools + version = "0.6.0"; src = fetchFromGitHub { owner = "dbohdan"; - repo = "jsonwatch"; + repo = pname; rev = "v${version}"; - sha256 = "sha256-yLN6jOxAz+B7zvV3tGT6Nxi17v9ZOtWpbtSi0o1h48U="; + sha256 = "sha256-TGW04P8t0mAXza7I7qp6QRXA/MDE3m1dlRC7bMf2dSk="; }; - propagatedBuildInputs = [ six ]; + cargoSha256 = "sha256-Gjb7v3kz11iOml3Ykxhy43KNxzaprgMbb5DpPNChLTc="; + + buildInputs = lib.optional stdenv.isDarwin [ + Security + ]; meta = with lib; { description = "Like watch -d but for JSON"; longDescription = '' jsonwatch is a command line utility with which you can track changes in JSON data delivered by a shell command or a web - (HTTP/HTTPS) API. jsonwatch requests data from the designated + (HTTP/HTTPS) API. jsonwatch requests data from the designated source repeatedly at a set interval and displays the - differences when the data changes. It is similar in its - behavior to how watch(1) with the -d switch works for - plain-text data. + differences when the data changes. ''; homepage = "https://github.com/dbohdan/jsonwatch"; license = licenses.mit; - platforms = platforms.all; + maintainers = with maintainers; [ fab ]; }; } diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 5a2a34d67270..9d455fa1b077 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -6724,6 +6724,10 @@ with pkgs; json-schema-for-humans = with python3Packages; toPythonApplication json-schema-for-humans; + jsonwatch = callPackage ../tools/misc/jsonwatch { + inherit (darwin.apple_sdk.frameworks) Security; + }; + jtc = callPackage ../development/tools/jtc { }; jumpapp = callPackage ../tools/X11/jumpapp {}; diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index e57eabcc6845..bf89cf5643a4 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -4095,8 +4095,6 @@ in { jsonstreams = callPackage ../development/python-modules/jsonstreams { }; - jsonwatch = callPackage ../development/python-modules/jsonwatch { }; - jug = callPackage ../development/python-modules/jug { }; junitparser = callPackage ../development/python-modules/junitparser { }; From 21b121dc619da589213fdef177dd0bee529bd85f Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 09:39:38 +0000 Subject: [PATCH 218/278] php74Extensions.rdkafka: 5.0.0 -> 5.0.2 --- pkgs/development/php-packages/rdkafka/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/php-packages/rdkafka/default.nix b/pkgs/development/php-packages/rdkafka/default.nix index 1b963a01ad5d..6ac94b8eb025 100644 --- a/pkgs/development/php-packages/rdkafka/default.nix +++ b/pkgs/development/php-packages/rdkafka/default.nix @@ -3,8 +3,8 @@ buildPecl { pname = "rdkafka"; - version = "5.0.0"; - sha256 = "sha256-Qy+6rkPczhdxFbDhcuzmUTLMPUXYZ0HaheDBhkh4FXs="; + version = "5.0.2"; + sha256 = "sha256-slCwtt8ySE5Zk2tnaYO6E0N20VZS8CVSsr8EgqssvOk="; buildInputs = [ rdkafka pcre2 ]; From 08c55412cd09a07b1b944bf211f5781c90956e27 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 09:40:46 +0000 Subject: [PATCH 219/278] python38Packages.exchangelib: 4.6.1 -> 4.6.2 --- pkgs/development/python-modules/exchangelib/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/python-modules/exchangelib/default.nix b/pkgs/development/python-modules/exchangelib/default.nix index d57b054350d7..6ab7495fcb30 100644 --- a/pkgs/development/python-modules/exchangelib/default.nix +++ b/pkgs/development/python-modules/exchangelib/default.nix @@ -27,7 +27,7 @@ buildPythonPackage rec { pname = "exchangelib"; - version = "4.6.1"; + version = "4.6.2"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -36,7 +36,7 @@ buildPythonPackage rec { owner = "ecederstrand"; repo = pname; rev = "v${version}"; - sha256 = "sha256-9MvxQe5VnR+UHB5DSn6EtExKTYsTvzZzCCaTTkCBQkU="; + sha256 = "1vax4xqjav6nr3kfkz390ism3cs69dxnbx6sc0f9ci4mn3rxjwdy"; }; propagatedBuildInputs = [ From 62fbf8d7c26a3b5388a344fad65a1b027be27397 Mon Sep 17 00:00:00 2001 From: Fabian Affolter Date: Wed, 8 Dec 2021 10:41:45 +0100 Subject: [PATCH 220/278] python3Packages.archinfo: 9.0.10689 -> 9.0.10730 --- pkgs/development/python-modules/archinfo/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/python-modules/archinfo/default.nix b/pkgs/development/python-modules/archinfo/default.nix index e07ae115fcb4..5f1a4ea3127d 100644 --- a/pkgs/development/python-modules/archinfo/default.nix +++ b/pkgs/development/python-modules/archinfo/default.nix @@ -7,13 +7,13 @@ buildPythonPackage rec { pname = "archinfo"; - version = "9.0.10689"; + version = "9.0.10730"; src = fetchFromGitHub { owner = "angr"; repo = pname; rev = "v${version}"; - sha256 = "sha256-kye8muKTm79lVhOBJeHnI4apJBsUVtNtGYpNiykXFDs="; + sha256 = "sha256-z48nlPqbKiJkF1sAufUfUSfGLjKhTRaGq5t5nbsbsh8="; }; checkInputs = [ From 62679ee8af7ca641ab573f03de98a0948ac95751 Mon Sep 17 00:00:00 2001 From: Fabian Affolter Date: Wed, 8 Dec 2021 10:41:49 +0100 Subject: [PATCH 221/278] python3Packages.ailment: 9.0.10689 -> 9.0.10730 --- pkgs/development/python-modules/ailment/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/python-modules/ailment/default.nix b/pkgs/development/python-modules/ailment/default.nix index 9797d8ebe76b..d1e47682e149 100644 --- a/pkgs/development/python-modules/ailment/default.nix +++ b/pkgs/development/python-modules/ailment/default.nix @@ -7,14 +7,14 @@ buildPythonPackage rec { pname = "ailment"; - version = "9.0.10689"; + version = "9.0.10730"; disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "angr"; repo = pname; rev = "v${version}"; - sha256 = "sha256-U+2R/TlMwRj+FEuO1aOox7dt3RXlDjazjoG7IfN8um8="; + sha256 = "sha256-lmtxCl9QiVVd6cQ8jFMDpJg7rC99Htac0q5VFp7LVyk="; }; propagatedBuildInputs = [ pyvex ]; From de977fbdf4596dd19c8b9c5104f33f8476486c0d Mon Sep 17 00:00:00 2001 From: Fabian Affolter Date: Wed, 8 Dec 2021 10:41:52 +0100 Subject: [PATCH 222/278] python3Packages.pyvex: 9.0.10689 -> 9.0.10730 --- pkgs/development/python-modules/pyvex/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/python-modules/pyvex/default.nix b/pkgs/development/python-modules/pyvex/default.nix index 388611595a6d..cca37f1ba777 100644 --- a/pkgs/development/python-modules/pyvex/default.nix +++ b/pkgs/development/python-modules/pyvex/default.nix @@ -11,11 +11,11 @@ buildPythonPackage rec { pname = "pyvex"; - version = "9.0.10689"; + version = "9.0.10730"; src = fetchPypi { inherit pname version; - sha256 = "sha256-BP0yRsp0I6QNN6lCpF6MwBw/BXTXCsNbmzfpKNMS0fQ="; + sha256 = "sha256-2cXbdPqWasGlXulxy6zGKQk3ent4dRwQWRGzKj3v6Ns="; }; postPatch = lib.optionalString stdenv.isDarwin '' From 8a8489ecd893ee8a5a37de3c1a082fac442ba224 Mon Sep 17 00:00:00 2001 From: Fabian Affolter Date: Wed, 8 Dec 2021 10:41:55 +0100 Subject: [PATCH 223/278] python3Packages.claripy: 9.0.10689 -> 9.0.10730 --- pkgs/development/python-modules/claripy/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/python-modules/claripy/default.nix b/pkgs/development/python-modules/claripy/default.nix index f5016d1fe7f8..64db7d938b93 100644 --- a/pkgs/development/python-modules/claripy/default.nix +++ b/pkgs/development/python-modules/claripy/default.nix @@ -13,14 +13,14 @@ buildPythonPackage rec { pname = "claripy"; - version = "9.0.10689"; + version = "9.0.10730"; disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "angr"; repo = pname; rev = "v${version}"; - sha256 = "sha256-s3h+SnqCi29B0/BwUHp08x7n4tej+u5aI4exGpeKbxc="; + sha256 = "sha256-ATc6PiYxkBx48O55sh5lHVkJVdqlx2wLPUZRgGKb20U="; }; # Use upstream z3 implementation From 7eda7a7f5a5438f9727deeccafad910f28877fbc Mon Sep 17 00:00:00 2001 From: Fabian Affolter Date: Wed, 8 Dec 2021 10:41:59 +0100 Subject: [PATCH 224/278] python3Packages.cle: 9.0.10689 -> 9.0.10730 --- pkgs/development/python-modules/cle/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/python-modules/cle/default.nix b/pkgs/development/python-modules/cle/default.nix index df3bd33e9961..f69236ecde73 100644 --- a/pkgs/development/python-modules/cle/default.nix +++ b/pkgs/development/python-modules/cle/default.nix @@ -15,7 +15,7 @@ let # The binaries are following the argr projects release cycle - version = "9.0.10689"; + version = "9.0.10730"; # Binary files from https://github.com/angr/binaries (only used for testing and only here) binaries = fetchFromGitHub { @@ -35,7 +35,7 @@ buildPythonPackage rec { owner = "angr"; repo = pname; rev = "v${version}"; - sha256 = "sha256-sZVdDEs+9UqPHWiCxrZpHp3UiB1hX8dTZxR3TXrIsTQ="; + sha256 = "sha256-Q5T5HNUE6WLDjz+qu5hMM6lIZp9WoK7+Sqs+ohlBgzc="; }; propagatedBuildInputs = [ From ace501f6215be3128f0d0e20cbf633e27649443a Mon Sep 17 00:00:00 2001 From: Fabian Affolter Date: Wed, 8 Dec 2021 10:42:03 +0100 Subject: [PATCH 225/278] python3Packages.angr: 9.0.10689 -> 9.0.10730 --- pkgs/development/python-modules/angr/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/python-modules/angr/default.nix b/pkgs/development/python-modules/angr/default.nix index 0fb339507448..0c4814eae1dc 100644 --- a/pkgs/development/python-modules/angr/default.nix +++ b/pkgs/development/python-modules/angr/default.nix @@ -44,14 +44,14 @@ in buildPythonPackage rec { pname = "angr"; - version = "9.0.10689"; + version = "9.0.10730"; disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = pname; repo = pname; rev = "v${version}"; - sha256 = "sha256-UMPJZUtfcUTiL0Ha+p1M09yhLwaCuBLpam4KUgtYvnw="; + sha256 = "sha256-vH5TL3l4KQh48iBXQDCH+SsB9z6fFKzHLZbtMds6JV0="; }; propagatedBuildInputs = [ From 5e35c9d4bfef9525663b5a9ef6d3010fd42e8a95 Mon Sep 17 00:00:00 2001 From: Fabian Affolter Date: Wed, 8 Dec 2021 10:42:07 +0100 Subject: [PATCH 226/278] python3Packages.angrop: 9.0.10689 -> 9.0.10730 --- pkgs/development/python-modules/angrop/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/python-modules/angrop/default.nix b/pkgs/development/python-modules/angrop/default.nix index 8cf1acc783eb..8355e737dca9 100644 --- a/pkgs/development/python-modules/angrop/default.nix +++ b/pkgs/development/python-modules/angrop/default.nix @@ -9,14 +9,14 @@ buildPythonPackage rec { pname = "angrop"; - version = "9.0.10689"; + version = "9.0.10730"; disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "angr"; repo = pname; rev = "v${version}"; - sha256 = "sha256-ZWu9Kk/d6Qz9IEDUkuaB0f5cZV0HnZAaEDnYSoiKMDI="; + sha256 = "sha256-AfnX7MmxdQWYC86T37A383s+56aCYRitbGYmET+jeTE="; }; propagatedBuildInputs = [ From 497dcab51ae611a81daa3ee92099ed467b0a3d54 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 09:48:43 +0000 Subject: [PATCH 227/278] php74Packages.phpstan: 0.12.99 -> 1.2.0 --- pkgs/development/php-packages/phpstan/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/php-packages/phpstan/default.nix b/pkgs/development/php-packages/phpstan/default.nix index 029d9f467763..4a193d9eaac1 100644 --- a/pkgs/development/php-packages/phpstan/default.nix +++ b/pkgs/development/php-packages/phpstan/default.nix @@ -1,14 +1,14 @@ { mkDerivation, fetchurl, makeWrapper, lib, php }: let pname = "phpstan"; - version = "0.12.99"; + version = "1.2.0"; in mkDerivation { inherit pname version; src = fetchurl { url = "https://github.com/phpstan/phpstan/releases/download/${version}/phpstan.phar"; - sha256 = "0rv8xf5yx88wh95myysqmv29n5rr15zgwsvh8a4xb1pmw3h9kb6q"; + sha256 = "sha256-WA1N6fOibS0+txaGxH+cOgec9CsrIYzQbpjQCfQf/ao="; }; dontUnpack = true; From 20a9dc6bdb6138b3d50e61ce53c543f96a25b375 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 09:04:11 +0000 Subject: [PATCH 228/278] gnome-builder: 41.2 -> 41.3 --- pkgs/applications/editors/gnome-builder/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/applications/editors/gnome-builder/default.nix b/pkgs/applications/editors/gnome-builder/default.nix index 1619ff1e6174..d9092b550117 100644 --- a/pkgs/applications/editors/gnome-builder/default.nix +++ b/pkgs/applications/editors/gnome-builder/default.nix @@ -39,13 +39,13 @@ stdenv.mkDerivation rec { pname = "gnome-builder"; - version = "41.2"; + version = "41.3"; outputs = [ "out" "devdoc" ]; src = fetchurl { url = "mirror://gnome/sources/${pname}/${lib.versions.major version}/${pname}-${version}.tar.xz"; - sha256 = "VjF7Vn94Yd2gNzKVsk6U7fSRnMlV+0XtYqyllGIY4BI="; + sha256 = "4iUPyOnp8gAsRS5ZUNgmhXNNPESAs1Fnq1CKyHAlCeE="; }; nativeBuildInputs = [ From 0ea3426d4da282d3abb392404f49c68610f7ce2c Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 09:58:38 +0000 Subject: [PATCH 229/278] php74Extensions.apcu: 5.1.20 -> 5.1.21 --- pkgs/development/php-packages/apcu/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/php-packages/apcu/default.nix b/pkgs/development/php-packages/apcu/default.nix index 0cfc7b4b44fd..150c761ae511 100644 --- a/pkgs/development/php-packages/apcu/default.nix +++ b/pkgs/development/php-packages/apcu/default.nix @@ -3,8 +3,8 @@ buildPecl { pname = "apcu"; - version = "5.1.20"; - sha256 = "sha256-uZ1A+v7Ab00TL87lPnUm3b/B0EHqbgThc4nfrSj5w5A="; + version = "5.1.21"; + sha256 = "sha256-EDNTBEhpbufK3shQUPbfUTX7EzAHLvKnRWk5Ks/s+8E="; buildInputs = [ pcre2 ]; doCheck = true; From 9cdda88bb513a97ab9aad553660f2be1c5da791d Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Janne=20He=C3=9F?= Date: Tue, 7 Dec 2021 18:38:42 +0100 Subject: [PATCH 230/278] nixos/pcmcia: Type the last option --- nixos/modules/hardware/pcmcia.nix | 1 + 1 file changed, 1 insertion(+) diff --git a/nixos/modules/hardware/pcmcia.nix b/nixos/modules/hardware/pcmcia.nix index d7d002ae6c8a..aef35a28e54d 100644 --- a/nixos/modules/hardware/pcmcia.nix +++ b/nixos/modules/hardware/pcmcia.nix @@ -35,6 +35,7 @@ in config = mkOption { default = null; + type = types.nullOr types.path; description = '' Path to the configuration file which maps the memory, IRQs and ports used by the PCMCIA hardware. From 713096b520169c4031552161db46c6fda1a99042 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 10:05:11 +0000 Subject: [PATCH 231/278] phoronix-test-suite: 10.2.2 -> 10.6.1 --- pkgs/tools/misc/phoronix-test-suite/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/tools/misc/phoronix-test-suite/default.nix b/pkgs/tools/misc/phoronix-test-suite/default.nix index f0f20d4b3a7b..e0375e2349e3 100644 --- a/pkgs/tools/misc/phoronix-test-suite/default.nix +++ b/pkgs/tools/misc/phoronix-test-suite/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "phoronix-test-suite"; - version = "10.2.2"; + version = "10.6.1"; src = fetchurl { url = "https://phoronix-test-suite.com/releases/${pname}-${version}.tar.gz"; - sha256 = "sha256-g5hUmsn01Msopxzmi/G4LcZISXMD2wFqreaHMkFzF1Y="; + sha256 = "sha256-ixDMd9/tO793yVvIE60n5gytfDAmcuA631/ZON9v6LA="; }; buildInputs = [ php ]; From 28db2a481da0c4372293a9909f3c508ab59d6cbb Mon Sep 17 00:00:00 2001 From: David Knaack Date: Wed, 8 Dec 2021 11:10:02 +0100 Subject: [PATCH 232/278] nixos/snapraid: fix evaluation Use string concatenation operator (`+`) instead of incorrect list concatenation operator (`++`) --- nixos/modules/tasks/snapraid.nix | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nixos/modules/tasks/snapraid.nix b/nixos/modules/tasks/snapraid.nix index ff956f306709..c8dde5b48993 100644 --- a/nixos/modules/tasks/snapraid.nix +++ b/nixos/modules/tasks/snapraid.nix @@ -207,7 +207,7 @@ in SystemCallArchitectures = "native"; SystemCallFilter = "@system-service"; SystemCallErrorNumber = "EPERM"; - CapabilityBoundingSet = "CAP_DAC_OVERRIDE" ++ + CapabilityBoundingSet = "CAP_DAC_OVERRIDE" + lib.optionalString cfg.touchBeforeSync " CAP_FOWNER"; ProtectSystem = "strict"; From 340ede9984c2e38890d1be5201efb581f1abe938 Mon Sep 17 00:00:00 2001 From: ajs124 Date: Wed, 8 Dec 2021 11:09:09 +0100 Subject: [PATCH 233/278] firefox: 94.0.2 -> 95.0 --- .../networking/browsers/firefox/common.nix | 10 +++---- .../firefox/no-buildconfig-ffx95.patch | 27 +++++++++++++++++++ .../networking/browsers/firefox/packages.nix | 4 +-- 3 files changed, 32 insertions(+), 9 deletions(-) create mode 100644 pkgs/applications/networking/browsers/firefox/no-buildconfig-ffx95.patch diff --git a/pkgs/applications/networking/browsers/firefox/common.nix b/pkgs/applications/networking/browsers/firefox/common.nix index b0d11bd835b6..041082484571 100644 --- a/pkgs/applications/networking/browsers/firefox/common.nix +++ b/pkgs/applications/networking/browsers/firefox/common.nix @@ -132,13 +132,8 @@ buildStdenv.mkDerivation ({ patches = [ ] ++ lib.optional (lib.versionAtLeast version "86") ./env_var_for_system_dir-ff86.patch ++ - lib.optional (lib.versionAtLeast version "90") ./no-buildconfig-ffx90.patch ++ - # This fixes a race condition causing deadlock. - # https://phabricator.services.mozilla.com/D128657 - lib.optional (lib.versionAtLeast version "94") (fetchpatch { - url = "https://raw.githubusercontent.com/archlinux/svntogit-packages/9c7f25d45bb1dd6b1a865780bc249cdaa619aa83/trunk/0002-Bug-1735905-Upgrade-cubeb-pulse-to-fix-a-race-condit.patch"; - sha256 = "l4bMK/YDXcDpIjPy9DPuUSFyDpzVQca201A4h9eav5g="; - }) ++ + lib.optional (lib.versionAtLeast version "90" && lib.versionOlder version "95") ./no-buildconfig-ffx90.patch ++ + lib.optional (lib.versionAtLeast version "95") ./no-buildconfig-ffx95.patch ++ patches; # Ignore trivial whitespace changes in patches, this fixes compatibility of @@ -297,6 +292,7 @@ buildStdenv.mkDerivation ({ ++ lib.optionals enableDebugSymbols [ "--disable-strip" "--disable-install-strip" ] ++ lib.optional enableOfficialBranding "--enable-official-branding" + ++ lib.optional (lib.versionAtLeast version "95") "--without-wasm-sandboxed-libraries" ++ extraConfigureFlags; postConfigure = '' diff --git a/pkgs/applications/networking/browsers/firefox/no-buildconfig-ffx95.patch b/pkgs/applications/networking/browsers/firefox/no-buildconfig-ffx95.patch new file mode 100644 index 000000000000..238c32ee45b1 --- /dev/null +++ b/pkgs/applications/networking/browsers/firefox/no-buildconfig-ffx95.patch @@ -0,0 +1,27 @@ +diff --git a/docshell/base/nsAboutRedirector.cpp b/docshell/base/nsAboutRedirector.cpp +index 038136a..1709f1f 100644 +--- a/docshell/base/nsAboutRedirector.cpp ++++ b/docshell/base/nsAboutRedirector.cpp +@@ -66,9 +66,6 @@ static const RedirEntry kRedirMap[] = { + {"about", "chrome://global/content/aboutAbout.html", 0}, + {"addons", "chrome://mozapps/content/extensions/aboutaddons.html", + nsIAboutModule::ALLOW_SCRIPT | nsIAboutModule::IS_SECURE_CHROME_UI}, +- {"buildconfig", "chrome://global/content/buildconfig.html", +- nsIAboutModule::URI_SAFE_FOR_UNTRUSTED_CONTENT | +- nsIAboutModule::IS_SECURE_CHROME_UI}, + {"checkerboard", "chrome://global/content/aboutCheckerboard.html", + nsIAboutModule::URI_SAFE_FOR_UNTRUSTED_CONTENT | + nsIAboutModule::ALLOW_SCRIPT}, +diff --git a/toolkit/content/jar.mn b/toolkit/content/jar.mn +index 9ac4305..916b4ad 100644 +--- a/toolkit/content/jar.mn ++++ b/toolkit/content/jar.mn +@@ -39,8 +39,6 @@ toolkit.jar: + content/global/plugins.html + content/global/plugins.css + content/global/plugins.js +-* content/global/buildconfig.html +- content/global/buildconfig.css + content/global/contentAreaUtils.js + content/global/datepicker.xhtml + #ifndef MOZ_FENNEC diff --git a/pkgs/applications/networking/browsers/firefox/packages.nix b/pkgs/applications/networking/browsers/firefox/packages.nix index 5923a967e720..0ba99f3d06b3 100644 --- a/pkgs/applications/networking/browsers/firefox/packages.nix +++ b/pkgs/applications/networking/browsers/firefox/packages.nix @@ -7,10 +7,10 @@ in rec { firefox = common rec { pname = "firefox"; - version = "94.0.2"; + version = "95.0"; src = fetchurl { url = "mirror://mozilla/firefox/releases/${version}/source/firefox-${version}.source.tar.xz"; - sha512 = "00ce4f6be711e1f309828e030163e61bbd9fe3364a8e852e644177c93832078877dea1a516719b106a52c0d8462193ed52c1d3cc7ae34ea021eb1dd0f5b685e2"; + sha512 = "350672a2cd99195c67dafc0e71c6eaf1e23e85a5fe92775697119a054f17c34a736035e23d7f2bb404b544f0f144efef3843cfc293596a6e61d1ea36efc3a724"; }; meta = { From 7aa74d9a137eb7afc281734382c5bade645e08f4 Mon Sep 17 00:00:00 2001 From: Vincent Laporte Date: Wed, 8 Dec 2021 11:45:27 +0100 Subject: [PATCH 234/278] ocamlPackages.faillib: remove at 111.17.00 This is a legacy library for OCaml < 4.06 --- .../ocaml-modules/faillib/default.nix | 28 ------------------- pkgs/top-level/ocaml-packages.nix | 2 -- 2 files changed, 30 deletions(-) delete mode 100644 pkgs/development/ocaml-modules/faillib/default.nix diff --git a/pkgs/development/ocaml-modules/faillib/default.nix b/pkgs/development/ocaml-modules/faillib/default.nix deleted file mode 100644 index e2d90e06bdb5..000000000000 --- a/pkgs/development/ocaml-modules/faillib/default.nix +++ /dev/null @@ -1,28 +0,0 @@ -{ lib, buildOcaml, fetchurl, ocaml, herelib, camlp4 }: - -if lib.versionAtLeast ocaml.version "4.06" -then throw "faillib-111.17.00 is not available for OCaml ${ocaml.version}" -else - -buildOcaml rec { - minimumSupportedOcamlVersion = "4.00"; - pname = "faillib"; - version = "111.17.00"; - - src = fetchurl { - url = "https://github.com/janestreet/faillib/archive/${version}.tar.gz"; - sha256 = "12dvaxkmgf7yzzvbadcyk1n17llgh6p8qr33867d21npaljy7l9v"; - }; - - propagatedBuildInputs = [ camlp4 herelib ]; - - doCheck = true; - checkPhase = "make test"; - - meta = with lib; { - homepage = "https://ocaml.janestreet.com/"; - description = "Library for dealing with failure in OCaml"; - license = licenses.asl20; - maintainers = [ maintainers.maurer ]; - }; -} diff --git a/pkgs/top-level/ocaml-packages.nix b/pkgs/top-level/ocaml-packages.nix index 5e89d1d03ecd..4967bc82cb3a 100644 --- a/pkgs/top-level/ocaml-packages.nix +++ b/pkgs/top-level/ocaml-packages.nix @@ -369,8 +369,6 @@ let facile = callPackage ../development/ocaml-modules/facile { }; - faillib = callPackage ../development/ocaml-modules/faillib { }; - faraday = callPackage ../development/ocaml-modules/faraday { }; faraday-async = callPackage ../development/ocaml-modules/faraday/async.nix { }; From ea2f45793d53cb5703bb94c52818203c1900ebfb Mon Sep 17 00:00:00 2001 From: Vincent Laporte Date: Wed, 8 Dec 2021 11:45:36 +0100 Subject: [PATCH 235/278] ocamlPackages.estring: remove broken --- .../ocaml-modules/estring/default.nix | 21 ------------------- pkgs/top-level/ocaml-packages.nix | 2 -- 2 files changed, 23 deletions(-) delete mode 100644 pkgs/development/ocaml-modules/estring/default.nix diff --git a/pkgs/development/ocaml-modules/estring/default.nix b/pkgs/development/ocaml-modules/estring/default.nix deleted file mode 100644 index c0cc3398763c..000000000000 --- a/pkgs/development/ocaml-modules/estring/default.nix +++ /dev/null @@ -1,21 +0,0 @@ -{ lib, buildOcaml, ocaml, fetchurl }: - -if lib.versionAtLeast ocaml.version "4.06" -then throw "estring is not available for OCaml ${ocaml.version}" -else - -buildOcaml rec { - pname = "estring"; - version = "1.3"; - - src = fetchurl { - url = "https://forge.ocamlcore.org/frs/download.php/1012/estring-${version}.tar.gz"; - sha256 = "0b6znz5igm8pp28w4b7sgy82rpd9m5aw6ss933rfbw1mrh05gvcg"; - }; - - meta = with lib; { - homepage = "http://estring.forge.ocamlcore.org/"; - description = "Extension for string literals"; - license = licenses.bsd3; - }; -} diff --git a/pkgs/top-level/ocaml-packages.nix b/pkgs/top-level/ocaml-packages.nix index 4967bc82cb3a..39fd58dcd778 100644 --- a/pkgs/top-level/ocaml-packages.nix +++ b/pkgs/top-level/ocaml-packages.nix @@ -359,8 +359,6 @@ let erm_xmpp = callPackage ../development/ocaml-modules/erm_xmpp { }; - estring = callPackage ../development/ocaml-modules/estring { }; - ethernet = callPackage ../development/ocaml-modules/ethernet { }; ezjsonm = callPackage ../development/ocaml-modules/ezjsonm { }; From 447e371cf8b6ea508d1dd429fbf9803e1aaffac7 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 10:56:46 +0000 Subject: [PATCH 236/278] python38Packages.deezer-py: 1.2.5 -> 1.2.7 --- pkgs/development/python-modules/deezer-py/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/python-modules/deezer-py/default.nix b/pkgs/development/python-modules/deezer-py/default.nix index ce2242a625eb..a3662e711e78 100644 --- a/pkgs/development/python-modules/deezer-py/default.nix +++ b/pkgs/development/python-modules/deezer-py/default.nix @@ -7,12 +7,12 @@ buildPythonPackage rec { pname = "deezer-py"; - version = "1.2.5"; + version = "1.2.7"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-JceyMBQFLD3fRPb9nJlGOSN7iACuJG8dmlFfOhhsYKc="; + sha256 = "20a99337fc22b7406f5bb9b4687535b91a61dc31998c0369c4efc76dffeb9a2c"; }; propagatedBuildInputs = [ requests ]; From 0782984c0593939330fe14c6fd1f70105742ddfb Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 10:57:41 +0000 Subject: [PATCH 237/278] php74Packages.composer: 2.1.9 -> 2.1.14 --- pkgs/development/php-packages/composer/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/php-packages/composer/default.nix b/pkgs/development/php-packages/composer/default.nix index 2ae6ec055476..c2e88bd20303 100644 --- a/pkgs/development/php-packages/composer/default.nix +++ b/pkgs/development/php-packages/composer/default.nix @@ -1,14 +1,14 @@ { mkDerivation, fetchurl, makeWrapper, unzip, lib, php }: let pname = "composer"; - version = "2.1.9"; + version = "2.1.14"; in mkDerivation { inherit pname version; src = fetchurl { url = "https://getcomposer.org/download/${version}/composer.phar"; - sha256 = "1fj8sq21qdsdidj5zh8s3c12pmf9nkmj36igmmixc5vc2h7bf02d"; + sha256 = "sha256-1EqQRSD5qqdm6LSwXS2admrZpvA/oaSFGCJKrXAwYaQ="; }; dontUnpack = true; From 24c6b28737966e42d306a0a191db8ea90c09b144 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Janne=20He=C3=9F?= Date: Wed, 8 Dec 2021 11:23:26 +0100 Subject: [PATCH 238/278] libspf2: Switch to a more supported upstream --- .../development/libraries/libspf2/default.nix | 27 ++++++------------- 1 file changed, 8 insertions(+), 19 deletions(-) diff --git a/pkgs/development/libraries/libspf2/default.nix b/pkgs/development/libraries/libspf2/default.nix index dc46e356e2c8..6ec8f24b7132 100644 --- a/pkgs/development/libraries/libspf2/default.nix +++ b/pkgs/development/libraries/libspf2/default.nix @@ -1,29 +1,18 @@ -{ lib, stdenv, fetchurl, autoreconfHook }: +{ lib, stdenv, fetchFromGitHub, autoreconfHook }: with lib; stdenv.mkDerivation rec { pname = "libspf2"; - version = "1.2.10"; + version = "2.2.12"; - src = fetchurl { - url = "https://www.libspf2.org/spf/libspf2-${version}.tar.gz"; - sha256 = "1j91p0qiipzf89qxq4m1wqhdf01hpn1h5xj4djbs51z23bl3s7nr"; + src = fetchFromGitHub { + owner = "helsinki-systems"; + repo = "libspf2"; + rev = "v${version}"; + sha256 = "03iiaafdcwh220pqignk407h6klrakwz0zkb8iwk6nkwipkwvhsx"; }; - patches = [ - (fetchurl { - name = "0001-gcc-variadic-macros.patch"; - url = "https://github.com/shevek/libspf2/commit/5852828582f556e73751076ad092f72acf7fc8b6.patch"; - sha256 = "1v6ashqzpr0xidxq0vpkjd8wd66cj8df01kyzj678ljzcrax35hk"; - }) - (fetchurl { - name = "0002-CVE-2021-20314.patch"; - url = "https://github.com/shevek/libspf2/commit/c37b7c13c30e225183899364b9f2efdfa85552ef.patch"; - sha256 = "190nnh7mlz6328829ba6jajad16s3md8kraspn81qnvhwh0nkiak"; - }) - ]; - postPatch = '' # disable static bins compilation sed -i \ @@ -42,7 +31,7 @@ stdenv.mkDerivation rec { description = "Implementation of the Sender Policy Framework for SMTP authorization"; homepage = "https://www.libspf2.org"; license = with licenses; [ lgpl21Plus bsd2 ]; - maintainers = with maintainers; [ pacien ]; + maintainers = with maintainers; [ pacien ajs124 das_j ]; platforms = platforms.all; }; } From 7a12bd32798008fb8da95da5d5f70ebae14de9be Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?J=C3=A9r=C3=A9my=20Pag=C3=A9?= Date: Wed, 8 Dec 2021 12:07:40 +0100 Subject: [PATCH 239/278] maintainers: add jpagex --- maintainers/maintainer-list.nix | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/maintainers/maintainer-list.nix b/maintainers/maintainer-list.nix index e098cf76fd5d..a90651883e7d 100644 --- a/maintainers/maintainer-list.nix +++ b/maintainers/maintainer-list.nix @@ -13389,4 +13389,10 @@ github = "vdot0x23"; githubId = 40716069; }; + jpagex = { + name = "Jérémy Pagé"; + email = "contact@jeremypage.me"; + github = "jpagex"; + githubId = 635768; + }; } From 1bb887de122c7cdf696ce805179aebe35c1cebf4 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 11:07:44 +0000 Subject: [PATCH 240/278] lagrange: 1.9.1 -> 1.9.2 --- pkgs/applications/networking/browsers/lagrange/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/applications/networking/browsers/lagrange/default.nix b/pkgs/applications/networking/browsers/lagrange/default.nix index db791d9e43c5..c0b8da52d722 100644 --- a/pkgs/applications/networking/browsers/lagrange/default.nix +++ b/pkgs/applications/networking/browsers/lagrange/default.nix @@ -19,13 +19,13 @@ stdenv.mkDerivation rec { pname = "lagrange"; - version = "1.9.1"; + version = "1.9.2"; src = fetchFromGitHub { owner = "skyjake"; repo = "lagrange"; rev = "v${version}"; - sha256 = "sha256-5mZbx9L7YDG2VwrF/iFhYCw8R/0FOnZz9cRkA5Wl9MA="; + sha256 = "sha256-ZiG3KSEk4l9FFxfftQNb1UHQV//SlK8thp5Tr8ek5v4="; fetchSubmodules = true; }; From 88842a90fa57735976c7c5424dc710532a8d6216 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 11:10:31 +0000 Subject: [PATCH 241/278] libpkgconf: 1.7.4 -> 1.8.0 --- pkgs/development/tools/misc/pkgconf/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/tools/misc/pkgconf/default.nix b/pkgs/development/tools/misc/pkgconf/default.nix index 2c55a6f03a7f..e3e0de4e7f16 100644 --- a/pkgs/development/tools/misc/pkgconf/default.nix +++ b/pkgs/development/tools/misc/pkgconf/default.nix @@ -2,7 +2,7 @@ stdenv.mkDerivation rec { pname = "pkgconf"; - version = "1.7.4"; + version = "1.8.0"; nativeBuildInputs = [ removeReferencesTo ]; @@ -12,7 +12,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "https://distfiles.dereferenced.org/${pname}/${pname}-${version}.tar.xz"; - sha256 = "sha256-1z8ywkikWRE5prF3d8gNTeq2tBTsKz0h0KJL40jEdqs="; + sha256 = "sha256-75x+YYIrfLg1bm6eHcpY2VVvMgDXisqzXkNH6dTCu68="; }; # Debian has outputs like these too: From 4e0f65ce17edfdb7bd506793156063483448d704 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 11:19:39 +0000 Subject: [PATCH 242/278] libsidplayfp: 2.3.0 -> 2.3.1 --- pkgs/development/libraries/libsidplayfp/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/libraries/libsidplayfp/default.nix b/pkgs/development/libraries/libsidplayfp/default.nix index fe902bfdd306..6e1319dda24f 100644 --- a/pkgs/development/libraries/libsidplayfp/default.nix +++ b/pkgs/development/libraries/libsidplayfp/default.nix @@ -16,14 +16,14 @@ stdenv.mkDerivation rec { pname = "libsidplayfp"; - version = "2.3.0"; + version = "2.3.1"; src = fetchFromGitHub { owner = "libsidplayfp"; repo = "libsidplayfp"; rev = "v${version}"; fetchSubmodules = true; - sha256 = "sha256-NtT6NaNs43gp8sgPNkRj85PBbpaG7hdUctDF564nZIk="; + sha256 = "sha256-Cu5mZzsqAO4X4Y8QAn851zIFPVPwxj5pB+jvA62L108="; }; postPatch = '' From da6125aceb8351148f1dc94f45fe1c78e4374dc1 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 11:26:15 +0000 Subject: [PATCH 243/278] polyml: 5.8.2 -> 5.9 --- pkgs/development/compilers/polyml/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/compilers/polyml/default.nix b/pkgs/development/compilers/polyml/default.nix index 2af100d067bc..8a283bb6cf99 100644 --- a/pkgs/development/compilers/polyml/default.nix +++ b/pkgs/development/compilers/polyml/default.nix @@ -2,7 +2,7 @@ stdenv.mkDerivation rec { pname = "polyml"; - version = "5.8.2"; + version = "5.9"; prePatch = lib.optionalString stdenv.isDarwin '' substituteInPlace configure.ac --replace stdc++ c++ @@ -22,7 +22,7 @@ stdenv.mkDerivation rec { owner = "polyml"; repo = "polyml"; rev = "v${version}"; - sha256 = "0vvla816g9rk9aa75gq63rb7bf6yla27p8wh1s1ycgq2in2zk0py"; + sha256 = "sha256-4oo4AB54CivhS99RuZVTP9+Ic0CDpsBb+OiHvOhmZnM="; }; meta = with lib; { From b91157b047b78ac69afb97e6987cab2220e944a8 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 11:51:15 +0000 Subject: [PATCH 244/278] plantuml: 1.2021.12 -> 1.2021.15 --- pkgs/tools/misc/plantuml/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/tools/misc/plantuml/default.nix b/pkgs/tools/misc/plantuml/default.nix index 14b9733bf69b..258c2117a793 100644 --- a/pkgs/tools/misc/plantuml/default.nix +++ b/pkgs/tools/misc/plantuml/default.nix @@ -1,12 +1,12 @@ { lib, stdenv, fetchurl, makeWrapper, jre, graphviz }: stdenv.mkDerivation rec { - version = "1.2021.12"; + version = "1.2021.15"; pname = "plantuml"; src = fetchurl { url = "mirror://sourceforge/project/plantuml/${version}/plantuml.${version}.jar"; - sha256 = "sha256-t9IQ1D2QJHrQmt/0EWofrqSf6o2YMUdpxFILsV5muog="; + sha256 = "sha256-wVwPPAIR7oDIe+vPh/NZJazX/CU4yAxzafDrst0YSBI="; }; nativeBuildInputs = [ makeWrapper ]; From e1abf750f79930074ded0d90d8ff4bb92736b2b9 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 11:59:02 +0000 Subject: [PATCH 245/278] php74Packages.psysh: 0.10.8 -> 0.10.12 --- pkgs/development/php-packages/psysh/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/php-packages/psysh/default.nix b/pkgs/development/php-packages/psysh/default.nix index 6b7277130c09..d1780f09aeff 100644 --- a/pkgs/development/php-packages/psysh/default.nix +++ b/pkgs/development/php-packages/psysh/default.nix @@ -1,14 +1,14 @@ { mkDerivation, fetchurl, makeWrapper, lib, php }: let pname = "psysh"; - version = "0.10.8"; + version = "0.10.12"; in mkDerivation { inherit pname version; src = fetchurl { url = "https://github.com/bobthecow/psysh/releases/download/v${version}/psysh-v${version}.tar.gz"; - sha256 = "sha256-6opSBKR5eI5HlaJy4A94JrxYfUtCCNVlyntmLZbWfOE="; + sha256 = "sha256-UJ44PgVdXw++gfKZgBTjOBFRj3GL0WUB7I0Qpdzrijw="; }; dontUnpack = true; From 3688c4ef87489b2e276587dcfe11307fa67407b6 Mon Sep 17 00:00:00 2001 From: Bernardo Meurer Date: Wed, 8 Dec 2021 12:03:23 +0000 Subject: [PATCH 246/278] linux_xanmod: point to linuxKernel.kernels.linux_xanmod --- pkgs/top-level/all-packages.nix | 1 + 1 file changed, 1 insertion(+) diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 5a2a34d67270..0c88150be4a2 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -22266,6 +22266,7 @@ with pkgs; # XanMod kernel linuxPackages_xanmod = linuxKernel.packages.linux_xanmod; + linux_xanmod = linuxKernel.kernels.linux_xanmod; cryptodev = linuxKernel.packages.linux_4_9.cryptodev; From 93b22ab6dc55d1bfe2a739307bb79f9115080449 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 12:07:27 +0000 Subject: [PATCH 247/278] php74Extensions.mailparse: 3.1.1 -> 3.1.2 --- pkgs/development/php-packages/mailparse/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/php-packages/mailparse/default.nix b/pkgs/development/php-packages/mailparse/default.nix index 1981b3d6aea2..f3796eb3b6c6 100644 --- a/pkgs/development/php-packages/mailparse/default.nix +++ b/pkgs/development/php-packages/mailparse/default.nix @@ -3,8 +3,8 @@ buildPecl { pname = "mailparse"; - version = "3.1.1"; - sha256 = "02nfjbgyjbr48rw6r46gd713hkxh7nghg2rcbr726zhzz182c3y7"; + version = "3.1.2"; + sha256 = "sha256-sGR6sH6kgPzBNTM2jjj9tPS7RdMNzmX8kGUqZwpPQBA="; internalDeps = [ php.extensions.mbstring ]; postConfigure = '' From 19945f7be585af4a13f61cdf14d3c293616e9f90 Mon Sep 17 00:00:00 2001 From: Bernardo Meurer Date: Wed, 8 Dec 2021 12:07:43 +0000 Subject: [PATCH 248/278] linux_xanmod: 5.15.4 -> 5.15.6 --- pkgs/os-specific/linux/kernel/linux-xanmod.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/os-specific/linux/kernel/linux-xanmod.nix b/pkgs/os-specific/linux/kernel/linux-xanmod.nix index a38c4a93b213..772e90c3f914 100644 --- a/pkgs/os-specific/linux/kernel/linux-xanmod.nix +++ b/pkgs/os-specific/linux/kernel/linux-xanmod.nix @@ -1,8 +1,8 @@ { lib, stdenv, buildLinux, fetchFromGitHub, ... } @ args: let - version = "5.15.4"; - release = "1"; + version = "5.15.6"; + release = "2"; suffix = "xanmod${release}-tt"; in buildLinux (args // rec { @@ -13,7 +13,7 @@ buildLinux (args // rec { owner = "xanmod"; repo = "linux"; rev = modDirVersion; - sha256 = "sha256-N/Gvlc5lYSH77nz30cOrtIk1CVu112fv4aOKmfT25XM="; + sha256 = "sha256-7wK/KIITQT3qmn4WMZHR9wigYgiq88njGn/FLYwI1ls="; }; structuredExtraConfig = with lib.kernel; { From f5ca72dcf3fed01728dbf62f3506eec9365faf08 Mon Sep 17 00:00:00 2001 From: Vincent Laporte Date: Wed, 8 Dec 2021 13:24:56 +0100 Subject: [PATCH 249/278] =?UTF-8?q?coqPackages.mathcomp-bigenough:=201.0.0?= =?UTF-8?q?=20=E2=86=92=201.0.1?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- .../coq-modules/mathcomp-bigenough/default.nix | 10 ++++++++-- 1 file changed, 8 insertions(+), 2 deletions(-) diff --git a/pkgs/development/coq-modules/mathcomp-bigenough/default.nix b/pkgs/development/coq-modules/mathcomp-bigenough/default.nix index 296bd738928f..2283d5ef1733 100644 --- a/pkgs/development/coq-modules/mathcomp-bigenough/default.nix +++ b/pkgs/development/coq-modules/mathcomp-bigenough/default.nix @@ -6,9 +6,15 @@ with lib; mkCoqDerivation { pname = "bigenough"; owner = "math-comp"; - release = { "1.0.0".sha256 = "10g0gp3hk7wri7lijkrqna263346wwf6a3hbd4qr9gn8hmsx70wg"; }; + release = { + "1.0.0".sha256 = "10g0gp3hk7wri7lijkrqna263346wwf6a3hbd4qr9gn8hmsx70wg"; + "1.0.1".sha256 = "sha256:02f4dv4rz72liciwxb2k7acwx6lgqz4381mqyq5854p3nbyn06aw"; + }; inherit version; - defaultVersion = "1.0.0"; + defaultVersion = with versions; switch coq.version [ + { case = range "8.10" "8.15"; out = "1.0.1"; } + { case = range "8.5" "8.14"; out = "1.0.0"; } + ] null; propagatedBuildInputs = [ mathcomp.ssreflect ]; From 19b685cfe0db6467e3809c6e1ea3895c4a735975 Mon Sep 17 00:00:00 2001 From: hqurve Date: Tue, 7 Dec 2021 21:34:17 -0400 Subject: [PATCH 250/278] space-cadet-pinball: init at unstable-2021-12-02 --- pkgs/games/space-cadet-pinball/default.nix | 51 ++++++++++++++++++++++ pkgs/top-level/all-packages.nix | 2 + 2 files changed, 53 insertions(+) create mode 100644 pkgs/games/space-cadet-pinball/default.nix diff --git a/pkgs/games/space-cadet-pinball/default.nix b/pkgs/games/space-cadet-pinball/default.nix new file mode 100644 index 000000000000..82a22d985790 --- /dev/null +++ b/pkgs/games/space-cadet-pinball/default.nix @@ -0,0 +1,51 @@ +{ lib, stdenv, fetchFromGitHub, fetchzip +, cmake, SDL2, SDL2_mixer +, unrar-wrapper, makeWrapper +}: + +let + assets = (fetchzip { + url = "https://archive.org/download/SpaceCadet_Plus95/Space_Cadet.rar"; + sha256 = "sha256-fC+zsR8BY6vXpUkVd6i1jF0IZZxVKVvNi6VWCKT+pA4="; + stripRoot = false; + }).overrideAttrs (old: { + nativeBuildInputs = old.nativeBuildInputs ++ [ unrar-wrapper ]; + }); +in +stdenv.mkDerivation rec { + pname = "SpaceCadetPinball"; + version = "unstable-2021-12-02"; + + src = fetchFromGitHub { + owner = "k4zmu2a"; + repo = pname; + rev = "de13d4e326b2dfa8e6dfb59815c0a8b9657f942d"; + sha256 = "sha256-/nk4kNsmL1z2rKgV1dh9gcVjp8xJwovhE6/u2aNl/fA="; + }; + + buildInputs = [ + SDL2 + SDL2_mixer + cmake + makeWrapper + ]; + + postInstall = '' + mkdir -p $out/lib/SpaceCadetPinball + install ${assets}/*.{DAT,DOC,MID,BMP,INF} ${assets}/Sounds/*.WAV $out/lib/SpaceCadetPinball + + # Assets are loaded from the directory of the program is stored in + # https://github.com/k4zmu2a/SpaceCadetPinball/blob/de13d4e326b2dfa8e6dfb59815c0a8b9657f942d/SpaceCadetPinball/winmain.cpp#L119 + mv $out/bin/SpaceCadetPinball $out/lib/SpaceCadetPinball + makeWrapper $out/lib/SpaceCadetPinball/SpaceCadetPinball $out/bin/SpaceCadetPinball + ''; + + meta = with lib; { + description = "Reverse engineering of 3D Pinball for Windows – Space Cadet, a game bundled with Windows"; + homepage = "https://github.com/k4zmu2a/SpaceCadetPinball"; + # The assets are unfree while the code is labeled as MIT + license = with licenses; [ unfree mit ]; + maintainers = [ maintainers.hqurve ]; + platforms = platforms.all; + }; +} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 360e1820e97f..15d077338a89 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -3598,6 +3598,8 @@ with pkgs; spacevim = callPackage ../applications/editors/spacevim { }; + space-cadet-pinball = callPackage ../games/space-cadet-pinball { }; + ssmsh = callPackage ../tools/admin/ssmsh { }; stacs = callPackage ../tools/security/stacs { }; From 3546aec12c0c52a39caee9ce2ef9c0e6b267f604 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 13:02:25 +0000 Subject: [PATCH 251/278] psftools: 1.1.0 -> 1.1.1 --- pkgs/os-specific/linux/psftools/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/os-specific/linux/psftools/default.nix b/pkgs/os-specific/linux/psftools/default.nix index 6d423be738e7..5d8c39bb145c 100644 --- a/pkgs/os-specific/linux/psftools/default.nix +++ b/pkgs/os-specific/linux/psftools/default.nix @@ -1,10 +1,10 @@ { lib, stdenv, fetchurl }: stdenv.mkDerivation rec { pname = "psftools"; - version = "1.1.0"; + version = "1.1.1"; src = fetchurl { url = "https://www.seasip.info/Unix/PSF/${pname}-${version}.tar.gz"; - sha256 = "sha256-P9eIHtEXC55C2rXweJ9Vw93tIspjjQ6MCQ44FJDEook="; + sha256 = "sha256-MecY4JsIXTgHdkrFkQ+C3fC6OEFRUgjUgf7qxfKeZtM="; }; outputs = ["out" "man" "dev" "lib"]; From bdfdfff9669b049d219d3ba78d4337988ddf8e64 Mon Sep 17 00:00:00 2001 From: nixbitcoin Date: Wed, 8 Dec 2021 13:03:44 +0000 Subject: [PATCH 252/278] elements: 0.21.0 -> 0.21.0.1 --- pkgs/applications/blockchains/elements/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/applications/blockchains/elements/default.nix b/pkgs/applications/blockchains/elements/default.nix index 63914af6f3c2..b0ed8a1a2e87 100644 --- a/pkgs/applications/blockchains/elements/default.nix +++ b/pkgs/applications/blockchains/elements/default.nix @@ -24,11 +24,11 @@ with lib; stdenv.mkDerivation rec { pname = if withGui then "elements" else "elementsd"; - version = "0.21.0"; + version = "0.21.0.1"; src = fetchurl { url = "https://github.com/ElementsProject/elements/archive/elements-${version}.tar.gz"; - sha256 = "0d9mcb0nw9qqhv0jhpddi9i4iry3w7b5jifsl5kpcw82qrkvgfgj"; + sha256 = "00a2lrn77mfmr5dvrqwplk20gaxxq4cd9gcx667hgmfmmz1v6r6b"; }; nativeBuildInputs = From 73a4286e3b2a6114bd21a68d84da7ebc7ca218e4 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 13:18:25 +0000 Subject: [PATCH 253/278] prometheus-node-exporter: 1.3.0 -> 1.3.1 --- pkgs/servers/monitoring/prometheus/node-exporter.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/servers/monitoring/prometheus/node-exporter.nix b/pkgs/servers/monitoring/prometheus/node-exporter.nix index 3056037060cc..7d40e919773d 100644 --- a/pkgs/servers/monitoring/prometheus/node-exporter.nix +++ b/pkgs/servers/monitoring/prometheus/node-exporter.nix @@ -2,14 +2,14 @@ buildGoModule rec { pname = "node_exporter"; - version = "1.3.0"; + version = "1.3.1"; rev = "v${version}"; src = fetchFromGitHub { inherit rev; owner = "prometheus"; repo = "node_exporter"; - sha256 = "sha256-gfRnlKq8F4gfea0JOzRqQDDFVJpNSfUX/cvFE/rUU1Q="; + sha256 = "sha256-+0k9LBsHqNHmoOAY1UDzbbqni+ikj+c3ijfT41rCfLc="; }; vendorSha256 = "sha256-nAvODyy+PfkGFAaq+3hBhQaPji5GUMU7N8xcgbGQMeI="; From 8030740b154f470352c9787586ce0ff69c33994b Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 13:26:06 +0000 Subject: [PATCH 254/278] php74Extensions.imagick: 3.5.0 -> 3.6.0 --- pkgs/development/php-packages/imagick/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/php-packages/imagick/default.nix b/pkgs/development/php-packages/imagick/default.nix index 7da324b2e1a2..280ad28f8f60 100644 --- a/pkgs/development/php-packages/imagick/default.nix +++ b/pkgs/development/php-packages/imagick/default.nix @@ -3,8 +3,8 @@ buildPecl { pname = "imagick"; - version = "3.5.0"; - sha256 = "0afjyll6rr79am6d1p041bl4dj44hp9z4gzmlhrkvkdsdz1vfpbr"; + version = "3.6.0"; + sha256 = "sha256-Till8tcN1ZpA55V9VuWQ5zHK0maen4ng/KFZ10jSlH4="; configureFlags = [ "--with-imagick=${imagemagick.dev}" ]; nativeBuildInputs = [ pkg-config ]; From b8a221262b7a16bb6be806d0f909cd582a61bcb7 Mon Sep 17 00:00:00 2001 From: Yannick Markus Date: Wed, 8 Dec 2021 14:27:52 +0100 Subject: [PATCH 255/278] doc: ruby-section: add workaround for platform-specific gems --- doc/languages-frameworks/ruby.section.md | 13 +++++++++++++ 1 file changed, 13 insertions(+) diff --git a/doc/languages-frameworks/ruby.section.md b/doc/languages-frameworks/ruby.section.md index 5e2f72ed61ec..e29f97c566c1 100644 --- a/doc/languages-frameworks/ruby.section.md +++ b/doc/languages-frameworks/ruby.section.md @@ -201,6 +201,19 @@ $ nix-shell --run 'ruby -rpg -e "puts PG.library_version"' Of course for this use-case one could also use overlays since the configuration for `pg` depends on the `postgresql` alias, but for demonstration purposes this has to suffice. +### Platform-specific gems + +Right now, bundix has some issues with pre-built, platform-specific gems: [bundix PR #68](https://github.com/nix-community/bundix/pull/68). +Until this is solved, you can tell bundler to not use platform-specific gems and instead build them from source each time: +- globally (will be set in `~/.config/.bundle/config`): +```shell +$ bundle config set force_ruby_platform true +``` +- locally (will be set in `/.bundle/config`): +```shell +$ bundle config set --local force_ruby_platform true +``` + ### Adding a gem to the default gemset {#adding-a-gem-to-the-default-gemset} Now that you know how to get a working Ruby environment with Nix, it's time to go forward and start actually developing with Ruby. We will first have a look at how Ruby gems are packaged on Nix. Then, we will look at how you can use development mode with your code. From a5412446965b99f55c2827966eb9d08114839070 Mon Sep 17 00:00:00 2001 From: sternenseemann Date: Tue, 7 Dec 2021 20:52:52 +0100 Subject: [PATCH 256/278] dbqn, dbqn-native: unstable-2021-10-08 -> 0.2.1 --- pkgs/development/interpreters/bqn/dzaima-bqn/default.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/development/interpreters/bqn/dzaima-bqn/default.nix b/pkgs/development/interpreters/bqn/dzaima-bqn/default.nix index e9b6bdf83c78..a32757fcb335 100644 --- a/pkgs/development/interpreters/bqn/dzaima-bqn/default.nix +++ b/pkgs/development/interpreters/bqn/dzaima-bqn/default.nix @@ -8,13 +8,13 @@ stdenv.mkDerivation rec { pname = "dbqn" + lib.optionalString buildNativeImage "-native"; - version = "0.pre+date=2021-10-08"; + version = "0.2.1"; src = fetchFromGitHub { owner = "dzaima"; repo = "BQN"; - rev = "0001109a1c5a420421b368c79d34b1e93bfe606e"; - hash = "sha256-riHHclTLkrVbtzmcz9ungAIc7kaoFHS77+SNatsfNhc="; + rev = "v${version}"; + sha256 = "1kxzxz2hrd1871281s4rsi569qk314aqfmng9pkqn8gv9nqhmph0"; }; nativeBuildInputs = [ From 1f8a8bd75abe135429bbccf4ec76d06d87f32b57 Mon Sep 17 00:00:00 2001 From: James Guthrie Date: Wed, 8 Dec 2021 12:51:53 +0100 Subject: [PATCH 257/278] promscale: 0.6.2 -> 0.7.1 --- .../0001-remove-jaeger-test-dep.patch | 17 ++++++++++++ .../{promscale.nix => promscale/default.nix} | 26 ++++++++++--------- pkgs/top-level/all-packages.nix | 2 +- 3 files changed, 32 insertions(+), 13 deletions(-) create mode 100644 pkgs/servers/monitoring/prometheus/promscale/0001-remove-jaeger-test-dep.patch rename pkgs/servers/monitoring/prometheus/{promscale.nix => promscale/default.nix} (63%) diff --git a/pkgs/servers/monitoring/prometheus/promscale/0001-remove-jaeger-test-dep.patch b/pkgs/servers/monitoring/prometheus/promscale/0001-remove-jaeger-test-dep.patch new file mode 100644 index 000000000000..9266a9aca53c --- /dev/null +++ b/pkgs/servers/monitoring/prometheus/promscale/0001-remove-jaeger-test-dep.patch @@ -0,0 +1,17 @@ + +A Promscale test has a dependency on a package which was not intended to be +vendored, so `go mod vendor` breaks. The dependency is not required to build +Promscale, so it can be removed. + +diff --git a/pkg/tests/end_to_end_tests/trace_query_integration_test.go b/pkg/tests/end_to_end_tests/trace_query_integration_test.go +index 84a0d08..efbe5e1 100644 +--- a/pkg/tests/end_to_end_tests/trace_query_integration_test.go ++++ b/pkg/tests/end_to_end_tests/trace_query_integration_test.go +@@ -24,7 +24,6 @@ import ( + ingstr "github.com/timescale/promscale/pkg/pgmodel/ingestor" + "github.com/timescale/promscale/pkg/pgxconn" + +- jaegerQueryApp "github.com/jaegertracing/jaeger/cmd/query/app" + jaegerQueryService "github.com/jaegertracing/jaeger/cmd/query/app/querysvc" + jaegerJSONModel "github.com/jaegertracing/jaeger/model/json" + ) diff --git a/pkgs/servers/monitoring/prometheus/promscale.nix b/pkgs/servers/monitoring/prometheus/promscale/default.nix similarity index 63% rename from pkgs/servers/monitoring/prometheus/promscale.nix rename to pkgs/servers/monitoring/prometheus/promscale/default.nix index 5940d033deba..591542f28398 100644 --- a/pkgs/servers/monitoring/prometheus/promscale.nix +++ b/pkgs/servers/monitoring/prometheus/promscale/default.nix @@ -1,33 +1,35 @@ { lib , buildGoModule , fetchFromGitHub +, promscale +, testVersion }: buildGoModule rec { pname = "promscale"; - version = "0.6.2"; + version = "0.7.1"; src = fetchFromGitHub { owner = "timescale"; repo = pname; rev = version; - sha256 = "sha256-YGT+VaHX6dqYdJz002fGZxRYE3gFqY8Q7VdhtSTPpjU="; + sha256 = "sha256-OMDl8RGFOMW+KNX2tNHusJY/6gLZxuWCI3c0E/oqrfE="; }; - vendorSha256 = "sha256-o7vRSCEEqzhruHEnRPuxC1e4NzCl8Br4vvqg0pwGIgA="; + patches = [ + ./0001-remove-jaeger-test-dep.patch + ]; + + vendorSha256 = "sha256-IwHngKiQ+TangEj5PcdiGoLxQJrt/Y3EtbSYZYmfUOE="; ldflags = [ "-s" "-w" "-X github.com/timescale/promscale/pkg/version.Version=${version}" "-X github.com/timescale/promscale/pkg/version.CommitHash=${src.rev}" ]; doCheck = false; # Requires access to a docker daemon - doInstallCheck = true; - installCheckPhase = '' - if [[ "$("$out/bin/${pname}" -version)" == "${version}" ]]; then - echo '${pname} smoke check passed' - else - echo '${pname} smoke check failed' - exit 1 - fi - ''; + + passthru.tests.version = testVersion { + package = promscale; + command = "promscale -version"; + }; meta = with lib; { description = "An open-source analytical platform for Prometheus metrics"; diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 33aa4ae76338..861a69350b38 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -21358,7 +21358,7 @@ with pkgs; asciidoc = asciidoc-full; }; - promscale = callPackage ../servers/monitoring/prometheus/promscale.nix { }; + promscale = callPackage ../servers/monitoring/prometheus/promscale { }; timescaledb-parallel-copy = callPackage ../development/tools/database/timescaledb-parallel-copy { }; From 4c7aff47e1ae86aab66645712ae915a0cf16eaae Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 13:58:04 +0000 Subject: [PATCH 258/278] ansible-lint: 5.3.0 -> 5.3.1 --- pkgs/development/python-modules/ansible-lint/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/python-modules/ansible-lint/default.nix b/pkgs/development/python-modules/ansible-lint/default.nix index 8a5d1181ac86..a6381362b383 100644 --- a/pkgs/development/python-modules/ansible-lint/default.nix +++ b/pkgs/development/python-modules/ansible-lint/default.nix @@ -18,13 +18,13 @@ buildPythonPackage rec { pname = "ansible-lint"; - version = "5.3.0"; + version = "5.3.1"; disabled = isPy27; format = "pyproject"; src = fetchPypi { inherit pname version; - sha256 = "sha256-LlaJQ6uZ9kdN8mK8NYCNiwVXVKprMgRknVeIRzO6zi4="; + sha256 = "sha256-fXvHS5uQxZgr5cJ0wq/LpbgHPsiMznk/q0Y/5kGKJfY="; }; nativeBuildInputs = [ From 7e3e1a8e472a9ea1f44114c44585ee0547109550 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 12:55:39 +0000 Subject: [PATCH 259/278] oh-my-zsh: 2021-12-02 -> 2021-12-07 --- pkgs/shells/zsh/oh-my-zsh/default.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/shells/zsh/oh-my-zsh/default.nix b/pkgs/shells/zsh/oh-my-zsh/default.nix index 131d9cc38851..ddf89b38d5de 100644 --- a/pkgs/shells/zsh/oh-my-zsh/default.nix +++ b/pkgs/shells/zsh/oh-my-zsh/default.nix @@ -5,15 +5,15 @@ , git, nix, nixfmt, jq, coreutils, gnused, curl, cacert }: stdenv.mkDerivation rec { - version = "2021-12-02"; + version = "2021-12-07"; pname = "oh-my-zsh"; - rev = "841f3cb0bb7663fa1062ffc59acb7b4581dc1d0f"; + rev = "5b987e59d0fce1a74bcfd51750c6f52d7c29c647"; src = fetchFromGitHub { inherit rev; owner = "ohmyzsh"; repo = "ohmyzsh"; - sha256 = "Cn67FahvJAaAnO0MC1bBkVpIYByFR3EtrLoXs0beYHQ="; + sha256 = "JNAuWsD03F8fbhHwwDnDh+2pPjJsyFnT/oboZIhk3rc="; }; installPhase = '' From e02790f7261cf4a029fa0814935940904bd5e552 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 14:34:24 +0000 Subject: [PATCH 260/278] buildpack: 0.20.0 -> 0.22.0 --- pkgs/development/tools/buildpack/default.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/development/tools/buildpack/default.nix b/pkgs/development/tools/buildpack/default.nix index f4c65120036d..cd2365ef86f3 100644 --- a/pkgs/development/tools/buildpack/default.nix +++ b/pkgs/development/tools/buildpack/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "pack"; - version = "0.20.0"; + version = "0.22.0"; src = fetchFromGitHub { owner = "buildpacks"; repo = pname; rev = "v${version}"; - sha256 = "sha256-G1tnk0SlQVX4bEifmuZahazNv3bbdgmcr1V0dN9dlKc="; + sha256 = "sha256-ddJqHHunh8NSFJel7hCqkji8iYExytZ1phI8jxDMuPM="; }; - vendorSha256 = "sha256-jeOK4k1W/5LvqB52LriKD5jNvZa/nc2ypRowrem2y30="; + vendorSha256 = "sha256-PnZRyxRV/umJCS3L/GknqwcBedJVb2kRlVjiRgJoIuc="; nativeBuildInputs = [ installShellFiles ]; From a2a5e4ebd10cfc366496fca0fbc0119cb104d3d6 Mon Sep 17 00:00:00 2001 From: Bernardo Meurer Date: Wed, 8 Dec 2021 15:19:03 +0000 Subject: [PATCH 261/278] localtime: 2017-11-07 -> 2021-11-23 --- pkgs/tools/system/localtime/default.nix | 38 +++++++++++++------------ 1 file changed, 20 insertions(+), 18 deletions(-) diff --git a/pkgs/tools/system/localtime/default.nix b/pkgs/tools/system/localtime/default.nix index 0ad17c6c6595..943651fa2497 100644 --- a/pkgs/tools/system/localtime/default.nix +++ b/pkgs/tools/system/localtime/default.nix @@ -1,38 +1,40 @@ -{ lib, fetchFromGitHub, buildGoPackage, m4 }: +{ buildGoModule +, fetchFromGitHub +, geoclue2-with-demo-agent +, lib +, m4 +}: -buildGoPackage rec { +buildGoModule { pname = "localtime"; - version = "unstable-2017-11-07"; + version = "unstable-2021-11-23"; src = fetchFromGitHub { owner = "Stebalien"; repo = "localtime"; - rev = "2e7b4317c723406bd75b2a1d640219ab9f8090ce"; - sha256 = "04fyna8p7q7skzx9fzmncd6gx7x5pwa9jh8a84hpljlvj0kldfs8"; + rev = "3e5d6cd64444b2164e87cea03448bfb8eefd6ccd"; + sha256 = "sha256-6uxxPq6abtRqM/R2Fw46ynP9PEkHggTSUymLYlQXQRU="; }; - goPackagePath = "github.com/Stebalien/localtime"; + vendorSha256 = "sha256-sf3sL6aO5jSytT2NtBkA3lhg77RIzbYkSC4fkH+cwwk="; + + postPatch = '' + demoPath="${geoclue2-with-demo-agent}/libexec/geoclue-2.0/demos/agent" + sed -i localtimed.go -e "s#/usr/lib/geoclue-2.0/demos/agent#$demoPath#" + ''; nativeBuildInputs = [ m4 ]; - makeFlags = [ - "PREFIX=${placeholder "out"}" - "BINDIR=${placeholder "out"}/bin" - ]; - - buildPhase = '' - cd go/src/${goPackagePath} - make $makeFlags - ''; - installPhase = '' - make install $makeFlags + runHook preInstall + make PREFIX="$out" install + runHook postInstall ''; meta = with lib; { description = "A daemon for keeping the system timezone up-to-date based on the current location"; homepage = "https://github.com/Stebalien/localtime"; - maintainers = with maintainers; [ ]; + maintainers = with maintainers; [ lovesegfault ]; platforms = platforms.linux; license = licenses.gpl3; }; From 9deb6bf33612e07df6deb4db6811d84039a2e4f1 Mon Sep 17 00:00:00 2001 From: lassulus Date: Wed, 8 Dec 2021 16:17:47 +0100 Subject: [PATCH 262/278] steam: 1.0.0.73 -> 1.0.0.74 --- pkgs/games/steam/steam.nix | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/pkgs/games/steam/steam.nix b/pkgs/games/steam/steam.nix index fdc0058a2eee..88e2473801a0 100644 --- a/pkgs/games/steam/steam.nix +++ b/pkgs/games/steam/steam.nix @@ -2,15 +2,16 @@ let traceLog = "/tmp/steam-trace-dependencies.log"; - version = "1.0.0.73"; + version = "1.0.0.74"; in stdenv.mkDerivation { pname = "steam-original"; inherit version; src = fetchurl { - url = "https://repo.steampowered.com/steam/pool/steam/s/steam/steam_${version}.tar.gz"; - sha256 = "sha256-uVO6D1K8zGlq12lrIs7aTQEVnj1bk1P4wRUtkPWkNZE="; + # use archive url so the tarball doesn't 404 on a new release + url = "https://repo.steampowered.com/steam/archive/stable/steam_${version}.tar.gz"; + sha256 = "sha256-sO07g3j1Qejato2LWJ2FrW3AzfMCcBz46HEw7aKxojQ="; }; makeFlags = [ "DESTDIR=$(out)" "PREFIX=" ]; From 4e85fba98693f48d767f40841e189298e15c4947 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 16:04:37 +0000 Subject: [PATCH 263/278] libosip: 5.2.0 -> 5.3.0 --- pkgs/development/libraries/osip/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/development/libraries/osip/default.nix b/pkgs/development/libraries/osip/default.nix index b0603cc454f6..92da6bbdd4a1 100644 --- a/pkgs/development/libraries/osip/default.nix +++ b/pkgs/development/libraries/osip/default.nix @@ -1,9 +1,9 @@ {lib, stdenv, fetchurl}: stdenv.mkDerivation rec { - version = "5.2.0"; + version = "5.3.0"; src = fetchurl { url = "mirror://gnu/osip/libosip2-${version}.tar.gz"; - sha256 = "0xdk3cszkzb8nb757gl47slrr13mf6xz43ab4k343fv8llp8pd2g"; + sha256 = "sha256-9HJZFsIs9RSWnvsVw8IHIz1kc5OD99QpVgOLePbK6Mg="; }; pname = "libosip2"; From e0da0b7c6a1142798215e69a93b6eaa2514d6c03 Mon Sep 17 00:00:00 2001 From: Bernardo Meurer Date: Wed, 8 Dec 2021 16:09:59 +0000 Subject: [PATCH 264/278] firefox-bin: 94.0.2 -> 95.0 --- .../browsers/firefox-bin/release_sources.nix | 786 +++++++++--------- 1 file changed, 393 insertions(+), 393 deletions(-) diff --git a/pkgs/applications/networking/browsers/firefox-bin/release_sources.nix b/pkgs/applications/networking/browsers/firefox-bin/release_sources.nix index 5c065c4bde29..a2cc1ea9283b 100644 --- a/pkgs/applications/networking/browsers/firefox-bin/release_sources.nix +++ b/pkgs/applications/networking/browsers/firefox-bin/release_sources.nix @@ -1,985 +1,985 @@ { - version = "94.0.2"; + version = "95.0"; sources = [ - { url = "http://archive.mozilla.org/pub/firefox/releases/94.0.2/linux-x86_64/ach/firefox-94.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/95.0/linux-x86_64/ach/firefox-95.0.tar.bz2"; locale = "ach"; arch = "linux-x86_64"; - sha256 = "bd5c9faa119d8e16b24840ad5843b7a4c64f664ea29c1512a41756d19d2cb65e"; + sha256 = "baa9aae395c8ce157bdde4741c298153e864eb16b3ebb5c5ff02ec5427a4be7a"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/94.0.2/linux-x86_64/af/firefox-94.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/95.0/linux-x86_64/af/firefox-95.0.tar.bz2"; locale = "af"; arch = "linux-x86_64"; - sha256 = "9ed0fff3ccfef43b467e295daf21c776ab9419b00a0524de75d0f3b985baef5a"; + sha256 = "ba77c17049bb0773d792705e95963f8097142c1107b392db0b8a57a80f62f3d8"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/94.0.2/linux-x86_64/an/firefox-94.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/95.0/linux-x86_64/an/firefox-95.0.tar.bz2"; locale = "an"; arch = "linux-x86_64"; - sha256 = "989a16767a92a91ba100af7f4fc97e1cb26ab718adbd5f0a14bebf9c0cba0495"; + sha256 = "63ca2166a44bb00cea7f78b12bb32a3910192f32fb3a421182470c300481f9fc"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/94.0.2/linux-x86_64/ar/firefox-94.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/95.0/linux-x86_64/ar/firefox-95.0.tar.bz2"; locale = "ar"; arch = "linux-x86_64"; - sha256 = "8937403e15eac062bee7b189acb52c87e33b6177eb5e8e0f9dfd9167fd5b01cb"; + sha256 = "88c7b793915b6e0a7568637913ebbd915595be0d16e6fc56162dcc4629ac72a6"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/94.0.2/linux-x86_64/ast/firefox-94.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/95.0/linux-x86_64/ast/firefox-95.0.tar.bz2"; locale = "ast"; arch = "linux-x86_64"; - sha256 = "18a4051fbc0fdde0faeaee72951e2994a50a6f041d180075c4f38ee4b7f9fd3e"; + sha256 = "63dd7cf9eb56588977e9e1ae767cd951419c32a5d1995f42d76ea1a41913154c"; 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} - { url = "http://archive.mozilla.org/pub/firefox/releases/94.0.2/linux-i686/szl/firefox-94.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/95.0/linux-i686/szl/firefox-95.0.tar.bz2"; locale = "szl"; arch = "linux-i686"; - sha256 = "b793d4afc5b1d67b9f90461b1a82d389970ea1550876797b9ae031f9acb1f939"; + sha256 = "226c7b2474bc079fce8f7e3eff7f3d07c28603533301df36845c1e5e58882a88"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/94.0.2/linux-i686/ta/firefox-94.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/95.0/linux-i686/ta/firefox-95.0.tar.bz2"; locale = "ta"; arch = "linux-i686"; - sha256 = "4b4a5d317c535d23e49c341da57563b10eca4fed88f269d3fd4b2d88d58efb51"; + sha256 = "59f352b471823393d7bc94bd2f27190a5f8714b715f4e275b1ace658aa1963cb"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/94.0.2/linux-i686/te/firefox-94.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/95.0/linux-i686/te/firefox-95.0.tar.bz2"; locale = "te"; arch = "linux-i686"; - sha256 = "ebe97cb46f66a10a429437c44ee7fc58112502ff72dd496a1deaf08deb35a492"; + sha256 = "8ac438f4751f34bfd84a0257dfb2c6ac8d3a044b8d2f0fc75154b73b61ca8f0e"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/94.0.2/linux-i686/th/firefox-94.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/95.0/linux-i686/th/firefox-95.0.tar.bz2"; locale = "th"; arch = "linux-i686"; - sha256 = "e14f130d454ad543c26acc04fb8ae10b163e50f886eee95422976cce3109cc0d"; + sha256 = "5ad4843b8a4b89117228bad779aa317c042dc5de408f61383dc8db8835243ff8"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/94.0.2/linux-i686/tl/firefox-94.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/95.0/linux-i686/tl/firefox-95.0.tar.bz2"; locale = "tl"; arch = "linux-i686"; - sha256 = "8fbec4b22f4abedc1f08e86f06b0bd58c4c9b37475dc036c48430dcf1221e2c0"; + sha256 = "714f87ba16bd6650b1e32c7e5a42edf184720fd23677e6e80ad11431e6f3558f"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/94.0.2/linux-i686/tr/firefox-94.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/95.0/linux-i686/tr/firefox-95.0.tar.bz2"; locale = "tr"; arch = "linux-i686"; - sha256 = "99403ff004eee5e88098e37f3e5d62c56c72fb86358609f22826326751b81461"; + sha256 = "b306db5728e47834f38702a1751f418de967c6f99d67c98ca999cdcc42e0d8eb"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/94.0.2/linux-i686/trs/firefox-94.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/95.0/linux-i686/trs/firefox-95.0.tar.bz2"; locale = "trs"; arch = "linux-i686"; - sha256 = "ff0edf90e4122347430a9df1ad2d0e6fd05b7bbcf00ba92345d31b8bbaae67c2"; + sha256 = "e8aafa349540d8ef612f085ba49c583958075525df8e9e6d8f958f8d79be7620"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/94.0.2/linux-i686/uk/firefox-94.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/95.0/linux-i686/uk/firefox-95.0.tar.bz2"; locale = "uk"; arch = "linux-i686"; - sha256 = "3ddab9ade8f193ea1c5a61a92bfd502c8264de6f4b145793158c9cce99bf1cf5"; + sha256 = "8d3a3164dd9919bcc0ef0c95bb9be6a994bee95c2f51685b7ccc7ec583c8b9f7"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/94.0.2/linux-i686/ur/firefox-94.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/95.0/linux-i686/ur/firefox-95.0.tar.bz2"; locale = "ur"; arch = "linux-i686"; - sha256 = "5b9c92ab2ff9acf88148b9d9c9261aaf353740821fc62a2e2051217fde9c09e0"; + sha256 = "cb243dfee7f738643d2008bf0985e21e8a8f282bbc085eb0231a4d30a96b2b78"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/94.0.2/linux-i686/uz/firefox-94.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/95.0/linux-i686/uz/firefox-95.0.tar.bz2"; locale = "uz"; arch = "linux-i686"; - sha256 = "f1f4b441e1d76b0b92bc3af3f8bb4545699a1860935d008de12784d4a9fe0b9b"; + sha256 = "915c7a7d20668973e93196f3c0aad833646aa90c8eb492d68663c468f0c7cee4"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/94.0.2/linux-i686/vi/firefox-94.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/95.0/linux-i686/vi/firefox-95.0.tar.bz2"; locale = "vi"; arch = "linux-i686"; - sha256 = "a10fa164778d39194d898d9e5159ba1db917751d63e0a84d7d52e5a12747753b"; + sha256 = "1c3cd736af3a54512c60d38ac14529cfce2cede3495774cf45ebcb22d1777b46"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/94.0.2/linux-i686/xh/firefox-94.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/95.0/linux-i686/xh/firefox-95.0.tar.bz2"; locale = "xh"; arch = "linux-i686"; - sha256 = "3fdd7069f4f6d546f1eed76edd33b440b658c7519ef97368844f02aa8be6e851"; + sha256 = "935e1cef0bf29fcd0476e91c40431c330c10ad58ae304024f4a22c2f5802a06c"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/94.0.2/linux-i686/zh-CN/firefox-94.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/95.0/linux-i686/zh-CN/firefox-95.0.tar.bz2"; locale = "zh-CN"; arch = "linux-i686"; - sha256 = "942611c8165b14eff15ebaf00415d60e45982e3eac4cdc79b765c1461a3f42fa"; + sha256 = "48e44f731e148d01168255522c902e3eaa61a52662b6def5fa3b99b26a0256a9"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/94.0.2/linux-i686/zh-TW/firefox-94.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/95.0/linux-i686/zh-TW/firefox-95.0.tar.bz2"; locale = "zh-TW"; arch = "linux-i686"; - sha256 = "60c2b8946b79d8d32248e7624c5292cf9d141beffbccb046f6c2a7308d16b23c"; + sha256 = "dc4e3791021743cfef6030f557df9a9134b56ca92791edb6db0dfacaedd2ccfe"; } ]; } From ed57d3546c782b1e8d5c250e56f6f95eef22efd1 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 16:27:31 +0000 Subject: [PATCH 265/278] opkg: 0.4.4 -> 0.4.5 --- pkgs/tools/package-management/opkg/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/tools/package-management/opkg/default.nix b/pkgs/tools/package-management/opkg/default.nix index 631274cb7222..1853c080166c 100644 --- a/pkgs/tools/package-management/opkg/default.nix +++ b/pkgs/tools/package-management/opkg/default.nix @@ -2,11 +2,11 @@ , autoreconfHook }: stdenv.mkDerivation rec { - version = "0.4.4"; + version = "0.4.5"; pname = "opkg"; src = fetchurl { url = "https://downloads.yoctoproject.org/releases/opkg/opkg-${version}.tar.gz"; - sha256 = "sha256-IhesxYuOsxMAYx66514iLrxwDJwc9kCAiHBdGaRyyDk="; + sha256 = "sha256-oSFKdfo0+5Io242kcwjg5xGxyT/Yk4zxZMEP0o61Dx4="; }; nativeBuildInputs = [ pkg-config autoreconfHook ]; From b86115a1add0858b5f846d3f46d3015c464321ba Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 15:55:52 +0000 Subject: [PATCH 266/278] pcapfix: 1.1.4 -> 1.1.7 --- pkgs/tools/networking/pcapfix/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/tools/networking/pcapfix/default.nix b/pkgs/tools/networking/pcapfix/default.nix index bdce32f0813e..5a8f24355c26 100644 --- a/pkgs/tools/networking/pcapfix/default.nix +++ b/pkgs/tools/networking/pcapfix/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "pcapfix"; - version = "1.1.4"; + version = "1.1.7"; src = fetchurl { url = "https://f00l.de/pcapfix/pcapfix-${version}.tar.gz"; - sha256 = "0m6308ka33wqs568b7cwa1f5q0bv61j2nwfizdyzrazw673lnh6d"; + sha256 = "sha256-bL6/b5npdrGrdok5JK65DNh8MWUILRUmTBkz8POz4Ow="; }; postPatch = ''sed -i "s|/usr|$out|" Makefile''; From 2cac5a75f11203d7bac4ca45ae87930dbfa1ce8c Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?J=C3=A9r=C3=A9my=20Pag=C3=A9?= Date: Wed, 8 Dec 2021 12:08:12 +0100 Subject: [PATCH 267/278] elm-test-rs: init at 2.0 --- pkgs/development/compilers/elm/default.nix | 13 ++++++++++++- .../compilers/elm/packages/elm-test-rs.nix | 18 ++++++++++++++++++ 2 files changed, 30 insertions(+), 1 deletion(-) create mode 100644 pkgs/development/compilers/elm/packages/elm-test-rs.nix diff --git a/pkgs/development/compilers/elm/default.nix b/pkgs/development/compilers/elm/default.nix index b82f14d9ef9f..a4b0d12fd8b7 100644 --- a/pkgs/development/compilers/elm/default.nix +++ b/pkgs/development/compilers/elm/default.nix @@ -2,7 +2,7 @@ , haskell, haskellPackages, nodejs , fetchurl, fetchpatch, makeWrapper, writeScriptBin # Rust dependecies -, curl, rustPlatform, openssl, pkg-config, Security +, curl, rustPlatform, openssl, pkg-config, Security, darwin }: let fetchElmDeps = import ./fetchElmDeps.nix { inherit stdenv lib fetchurl; }; @@ -111,6 +111,17 @@ let maintainers = [ maintainers.turbomack ]; }; }; + + elm-test-rs = import ./packages/elm-test-rs.nix { + inherit lib rustPlatform fetchurl openssl stdenv Security darwin; + } // { + meta = with lib; { + description = "Fast and portable executable to run your Elm tests"; + homepage = "https://github.com/mpizenberg/elm-test-rs"; + license = licenses.bsd3; + maintainers = [ maintainers.jpagex ]; + }; + }; }; elmNodePackages = with elmLib; diff --git a/pkgs/development/compilers/elm/packages/elm-test-rs.nix b/pkgs/development/compilers/elm/packages/elm-test-rs.nix new file mode 100644 index 000000000000..a482809ab50d --- /dev/null +++ b/pkgs/development/compilers/elm/packages/elm-test-rs.nix @@ -0,0 +1,18 @@ +{ lib, rustPlatform, fetchurl, openssl, stdenv, Security, darwin }: +rustPlatform.buildRustPackage rec { + pname = "elm-test-rs"; + version = "2.0"; + + src = fetchurl { + url = "https://github.com/mpizenberg/elm-test-rs/archive/v${version}.tar.gz"; + sha256 = "sha256:1manr42w613r9vyji7pxx5gb08jcgkdxv29qqylrqlwxa8d5dcid"; + }; + + buildInputs = [ openssl ] ++ lib.optionals stdenv.isDarwin [ Security darwin.apple_sdk.frameworks.CoreServices ]; + + cargoSha256 = "sha256:1dpdlzv96kpc25yf5jgsz9qldghyw35x382qpxhkadkn5dryzjvd"; + verifyCargoDeps = true; + + # Tests perform networking and therefore can't work in sandbox + doCheck = false; +} From 67f6c0312848c0447b2f554a0143227ae5591282 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 16:58:22 +0000 Subject: [PATCH 268/278] padthv1: 0.9.18 -> 0.9.23 --- pkgs/applications/audio/padthv1/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/applications/audio/padthv1/default.nix b/pkgs/applications/audio/padthv1/default.nix index 90e80f13ac48..2c4581cc7319 100644 --- a/pkgs/applications/audio/padthv1/default.nix +++ b/pkgs/applications/audio/padthv1/default.nix @@ -2,11 +2,11 @@ mkDerivation rec { pname = "padthv1"; - version = "0.9.18"; + version = "0.9.23"; src = fetchurl { url = "mirror://sourceforge/padthv1/${pname}-${version}.tar.gz"; - sha256 = "1karrprb3ijrbiwpr43rl3nxnzc33lnmwrd1832psgr3flnr9fp5"; + sha256 = "sha256-9yFfvlskOYnGraou2S3Qffl8RoYJqE0wnDlOP8mxQgg="; }; buildInputs = [ libjack2 alsa-lib libsndfile liblo lv2 qt5.qtbase qt5.qttools fftwFloat ]; From a73696f9efa64d2be0bf5be2505ec29d6ae0b0c7 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Wed, 8 Dec 2021 15:25:06 +0000 Subject: [PATCH 269/278] orca: 41.0 -> 41.1 --- pkgs/applications/misc/orca/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/applications/misc/orca/default.nix b/pkgs/applications/misc/orca/default.nix index 688d5acdd127..a558ac67f7d1 100644 --- a/pkgs/applications/misc/orca/default.nix +++ b/pkgs/applications/misc/orca/default.nix @@ -34,13 +34,13 @@ buildPythonApplication rec { pname = "orca"; - version = "41.0"; + version = "41.1"; format = "other"; src = fetchurl { url = "mirror://gnome/sources/${pname}/${lib.versions.major version}/${pname}-${version}.tar.xz"; - sha256 = "dpflFEXhn9d05osWCtr2aHuAgXLeBBdgLhaXZra21L0="; + sha256 = "H9ArmQlPCfbnLfd54actzkFCfsguJFpOqDIzqX7tonE="; }; patches = [ From 52a2f435b1f33995d5bf4ae63ed6cf6fe149a6c0 Mon Sep 17 00:00:00 2001 From: Jan Tojnar Date: Wed, 8 Dec 2021 17:07:08 +0100 Subject: [PATCH 270/278] php74Extensions.blackfire: 1.70.0 -> 1.71.0 Add PHP 8.1 support. --- pkgs/development/tools/misc/blackfire/php-probe.nix | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/pkgs/development/tools/misc/blackfire/php-probe.nix b/pkgs/development/tools/misc/blackfire/php-probe.nix index 5872741d1a83..31ea03a2f868 100644 --- a/pkgs/development/tools/misc/blackfire/php-probe.nix +++ b/pkgs/development/tools/misc/blackfire/php-probe.nix @@ -15,14 +15,15 @@ let "7.3" = "blackfire-20180731"; "7.4" = "blackfire-20190902"; "8.0" = "blackfire-20200930"; + "8.1" = "blackfire-20210902"; }.${lib.versions.majorMinor php.version} or (throw "Unsupported PHP version."); in stdenv.mkDerivation rec { pname = "php-blackfire"; - version = "1.70.0"; + version = "1.71.0"; src = fetchurl { url = "https://packages.blackfire.io/debian/pool/any/main/b/blackfire-php/blackfire-php_${version}_amd64.deb"; - sha256 = "BOdVZCLwMQwVHFgmigXrWZhqZFP+1aWkeq9r24609nI="; + sha256 = "8LsYkzNy98qQ9niXrRCkL47Ouyd33ZICnSXx29WIWl4="; }; nativeBuildInputs = [ From eea6baad509b24c9137fd9d97fd3ae9392cf34de Mon Sep 17 00:00:00 2001 From: Artturin Date: Wed, 8 Dec 2021 18:26:08 +0200 Subject: [PATCH 271/278] make-squashfs: use $NIX_BUILD_CORES or 48 cores if above 48 by default all cores are used hoping this will fix the hydra i686 squashfs build issues as all the failures were using 64 cores Parallel mksquashfs: Using 64 processors Creating 4.0 filesystem on ..., block size 1048576. FATAL ERROR: mangle2:: xz compress failed with error code 5 --- nixos/lib/make-squashfs.nix | 9 ++++++++- 1 file changed, 8 insertions(+), 1 deletion(-) diff --git a/nixos/lib/make-squashfs.nix b/nixos/lib/make-squashfs.nix index 8690c42e7ac9..170d315fb751 100644 --- a/nixos/lib/make-squashfs.nix +++ b/nixos/lib/make-squashfs.nix @@ -21,8 +21,15 @@ stdenv.mkDerivation { # for nix-store --load-db. cp $closureInfo/registration nix-path-registration + # 64 cores on i686 does not work + # fails with FATAL ERROR: mangle2:: xz compress failed with error code 5 + if ((NIX_BUILD_CORES > 48)); then + NIX_BUILD_CORES=48 + fi + # Generate the squashfs image. mksquashfs nix-path-registration $(cat $closureInfo/store-paths) $out \ - -no-hardlinks -keep-as-directory -all-root -b 1048576 -comp ${comp} + -no-hardlinks -keep-as-directory -all-root -b 1048576 -comp ${comp} \ + -processors $NIX_BUILD_CORES ''; } From a5782a2b53e2bb77d1cb7cb9aa1242b2b296f247 Mon Sep 17 00:00:00 2001 From: Michael Weiss Date: Wed, 8 Dec 2021 19:30:16 +0100 Subject: [PATCH 272/278] ungoogled-chromium: 96.0.4664.45 -> 96.0.4664.93 --- .../networking/browsers/chromium/upstream-info.json | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/pkgs/applications/networking/browsers/chromium/upstream-info.json b/pkgs/applications/networking/browsers/chromium/upstream-info.json index 25f012f231eb..033b0b3e586d 100644 --- a/pkgs/applications/networking/browsers/chromium/upstream-info.json +++ b/pkgs/applications/networking/browsers/chromium/upstream-info.json @@ -44,9 +44,9 @@ } }, "ungoogled-chromium": { - "version": "96.0.4664.45", - "sha256": "01q4fsf2cbx6g9nnaihvc5jj3ap8jq2gf16pnhf7ixzbhgcnm328", - "sha256bin64": "0546i4yd1jahv088hjxpq0jc393pscvl5ap3s2qw5jrybliyfd2g", + "version": "96.0.4664.93", + "sha256": "14rlm91pzpdll6x2r1sxdswiv19h1ykxcq0csi9k9g0a9s71yyvw", + "sha256bin64": "15233njj6ln7q3c112ssfh9s4m3shhp920zw8648z9dr7k8512qb", "deps": { "gn": { "version": "2021-09-24", @@ -55,8 +55,8 @@ "sha256": "0y4414h8jqsbz5af6pn91c0vkfp4s281s85g992xfyl785c5zbsi" }, "ungoogled-patches": { - "rev": "96.0.4664.45-1", - "sha256": "1k0kf5ika1sz489bcbn485kmdq1xp7ssa80gbqrpd60xihkhnrm3" + "rev": "96.0.4664.93-1", + "sha256": "0r8cwriaxbmzy9sxa6mx71h8n1a0x7pdx3kmqc1sg97b2qwmg15r" } } } From 426f6957978ff049dcda866c219cab00eb7831fb Mon Sep 17 00:00:00 2001 From: Michael Weiss Date: Wed, 8 Dec 2021 19:30:16 +0100 Subject: [PATCH 273/278] chromiumDev: 98.0.4736.0 -> 98.0.4750.0 --- .../networking/browsers/chromium/upstream-info.json | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/pkgs/applications/networking/browsers/chromium/upstream-info.json b/pkgs/applications/networking/browsers/chromium/upstream-info.json index 25f012f231eb..6158bd76bbbe 100644 --- a/pkgs/applications/networking/browsers/chromium/upstream-info.json +++ b/pkgs/applications/networking/browsers/chromium/upstream-info.json @@ -31,15 +31,15 @@ } }, "dev": { - "version": "98.0.4736.0", - "sha256": "1bakzvzx0604k20p16lxmbl0s8za6fy4akng35c1kzf350jznq7n", - "sha256bin64": "09adpl6b43fzlms081c1bs3vrlwrm3kq0mfcqff4q33i0wb5wl25", + "version": "98.0.4750.0", + "sha256": "0qygnmb1wlbarni2pdfs1xl50ggvf0211c6mj7341wwsbd0bpkgr", + "sha256bin64": "1psbh5xwlgr4ain4s9vk7d0kdbbd14v29f95ai5i4d2d3cpj2319", "deps": { "gn": { - "version": "2021-11-24", + "version": "2021-12-03", "url": "https://gn.googlesource.com/gn", - "rev": "b79031308cc878488202beb99883ec1f2efd9a6d", - "sha256": "1fdn48y0nvs2qm67qvp1i75d9278ddi5v3bpxgjf28zrh9yragwd" + "rev": "e0afadf7a743d5b14737bd454df45d5f1caf0d23", + "sha256": "00pxhfikscghgm79zckh9j00jgjmdy6hixkpfq5vmgc0xpxif78v" } } }, From bcb4b714bdddec94d88ff974f242cdb3f3308dac Mon Sep 17 00:00:00 2001 From: Jan Tojnar Date: Wed, 8 Dec 2021 19:52:32 +0100 Subject: [PATCH 274/278] Revert "nixos: make GIO_EXTRA_MODULES a session variable" This reverts commit abfcb79abf3ba32eb4719c48915a143370093fb7. Fixes: https://github.com/NixOS/nixpkgs/issues/149539 --- nixos/modules/programs/dconf.nix | 2 +- nixos/modules/services/desktops/gnome/glib-networking.nix | 2 +- nixos/modules/services/desktops/gvfs.nix | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/nixos/modules/programs/dconf.nix b/nixos/modules/programs/dconf.nix index 265c41cbbbc9..298abac8afa9 100644 --- a/nixos/modules/programs/dconf.nix +++ b/nixos/modules/programs/dconf.nix @@ -60,7 +60,7 @@ in environment.systemPackages = [ pkgs.dconf ]; # Needed for unwrapped applications - environment.sessionVariables.GIO_EXTRA_MODULES = mkIf cfg.enable [ "${pkgs.dconf.lib}/lib/gio/modules" ]; + environment.variables.GIO_EXTRA_MODULES = mkIf cfg.enable [ "${pkgs.dconf.lib}/lib/gio/modules" ]; }; } diff --git a/nixos/modules/services/desktops/gnome/glib-networking.nix b/nixos/modules/services/desktops/gnome/glib-networking.nix index 1039605391ab..4288b6b5de61 100644 --- a/nixos/modules/services/desktops/gnome/glib-networking.nix +++ b/nixos/modules/services/desktops/gnome/glib-networking.nix @@ -38,7 +38,7 @@ with lib; systemd.packages = [ pkgs.glib-networking ]; - environment.sessionVariables.GIO_EXTRA_MODULES = [ "${pkgs.glib-networking.out}/lib/gio/modules" ]; + environment.variables.GIO_EXTRA_MODULES = [ "${pkgs.glib-networking.out}/lib/gio/modules" ]; }; diff --git a/nixos/modules/services/desktops/gvfs.nix b/nixos/modules/services/desktops/gvfs.nix index f2b2855dc3e0..b6a27279bdf8 100644 --- a/nixos/modules/services/desktops/gvfs.nix +++ b/nixos/modules/services/desktops/gvfs.nix @@ -57,7 +57,7 @@ in services.udev.packages = [ pkgs.libmtp.bin ]; # Needed for unwrapped applications - environment.sessionVariables.GIO_EXTRA_MODULES = [ "${cfg.package}/lib/gio/modules" ]; + environment.variables.GIO_EXTRA_MODULES = [ "${cfg.package}/lib/gio/modules" ]; }; From 7842f1ba082de799f2bba0ce822e54e5d4efdd9d Mon Sep 17 00:00:00 2001 From: Smitty Date: Wed, 8 Dec 2021 13:55:41 -0500 Subject: [PATCH 275/278] imageworsener: 1.3.3 -> 1.3.4 Updates imageworsener to 1.3.4, and adds me as a maintainer. Update tag: https://github.com/jsummers/imageworsener/releases/tag/1.3.4 --- pkgs/tools/graphics/imageworsener/default.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/tools/graphics/imageworsener/default.nix b/pkgs/tools/graphics/imageworsener/default.nix index 120643ddde05..126bcfefc80d 100644 --- a/pkgs/tools/graphics/imageworsener/default.nix +++ b/pkgs/tools/graphics/imageworsener/default.nix @@ -8,11 +8,11 @@ stdenv.mkDerivation rec { pname = "imageworsener"; - version = "1.3.3"; + version = "1.3.4"; src = fetchurl { url = "https://entropymine.com/${pname}/${pname}-${version}.tar.gz"; - sha256 = "099ymaqk7gj0plmdx7fxabbdx2n03d25r00ly0vf6cx37mgnwjvw"; + sha256 = "1dhjhlfrdng50dxxd306adzm54ir62pz99h4v0yi6rg56nxv5q5s"; }; postPatch = '' @@ -35,7 +35,7 @@ stdenv.mkDerivation rec { homepage = "https://entropymine.com/imageworsener/"; changelog = "https://github.com/jsummers/${pname}/blob/${version}/changelog.txt"; license = licenses.mit; - maintainers = with maintainers; [ emily ]; + maintainers = with maintainers; [ emily smitop ]; platforms = platforms.all; }; } From 67f6fbd5310795e7432e691bbc63e9025e04a14e Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?J=C3=B6rn=20Gersdorf?= Date: Wed, 8 Dec 2021 20:24:03 +0100 Subject: [PATCH 276/278] nixos-shell: 0.21 -> 0.22 --- pkgs/tools/virtualization/nixos-shell/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgs/tools/virtualization/nixos-shell/default.nix b/pkgs/tools/virtualization/nixos-shell/default.nix index 9f34fb99c754..4e54a8db6bf4 100644 --- a/pkgs/tools/virtualization/nixos-shell/default.nix +++ b/pkgs/tools/virtualization/nixos-shell/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "nixos-shell"; - version = "0.2.1"; + version = "0.2.2"; src = fetchFromGitHub { owner = "Mic92"; repo = "nixos-shell"; rev = version; - sha256 = "sha256-HoY2diusDHXwR0BjYwKR3svLz5LrviE03yxyjWG9oPQ="; + sha256 = "sha256-a3NJJv7MscAXhIdr07gEAQDYX0Qgb6ax5E8zSdCIgE8="; }; nativeBuildInputs = [ makeWrapper ]; From 1fe9e52a1bdf6be9ab11a24fb8060f426766d756 Mon Sep 17 00:00:00 2001 From: "R. Ryantm" Date: Tue, 7 Dec 2021 02:27:17 +0000 Subject: [PATCH 277/278] grafana-agent: 0.20.0 -> 0.21.1 --- pkgs/servers/monitoring/grafana-agent/default.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/servers/monitoring/grafana-agent/default.nix b/pkgs/servers/monitoring/grafana-agent/default.nix index 01bfd6b4c2c9..2fa310ea9b7f 100644 --- a/pkgs/servers/monitoring/grafana-agent/default.nix +++ b/pkgs/servers/monitoring/grafana-agent/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "grafana-agent"; - version = "0.20.0"; + version = "0.21.1"; src = fetchFromGitHub { rev = "v${version}"; owner = "grafana"; repo = "agent"; - sha256 = "sha256-oe5uUG3uQnobH94J3ndI35pnw7zExqtoXJ3Ro9lSrrc="; + sha256 = "sha256-ABiyL1QpVtoQ4hwpDc3rwlhwILdQBX1wHKHj1K5O2jw="; }; - vendorSha256 = "sha256-uQEcoAxodMMSv0vEKtcmXYzZ50YYdywHG3S07UONN84="; + vendorSha256 = "sha256-VFCuCUV5tq1svQN8WoFdmxhLI8OEODQd2kc1caYLGro="; patches = [ # https://github.com/grafana/agent/issues/731 From 0d85aadbf639e143421ed461ab0a9c42f5f99781 Mon Sep 17 00:00:00 2001 From: Florian Klink Date: Wed, 8 Dec 2021 21:11:30 +0100 Subject: [PATCH 278/278] grafana-agent: 0.21.1 -> 0.21.2 Fixes CVE-2021-41090 --- pkgs/servers/monitoring/grafana-agent/default.nix | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pkgs/servers/monitoring/grafana-agent/default.nix b/pkgs/servers/monitoring/grafana-agent/default.nix index 2fa310ea9b7f..4ef0c34e393f 100644 --- a/pkgs/servers/monitoring/grafana-agent/default.nix +++ b/pkgs/servers/monitoring/grafana-agent/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "grafana-agent"; - version = "0.21.1"; + version = "0.21.2"; src = fetchFromGitHub { rev = "v${version}"; owner = "grafana"; repo = "agent"; - sha256 = "sha256-ABiyL1QpVtoQ4hwpDc3rwlhwILdQBX1wHKHj1K5O2jw="; + sha256 = "sha256-s++21feD3L2HuVYFjWhNIOGTjjX+lXwURc4PqbwFnhI="; }; - vendorSha256 = "sha256-VFCuCUV5tq1svQN8WoFdmxhLI8OEODQd2kc1caYLGro="; + vendorSha256 = "sha256-kxLtbElzfimC/ZefUyTlfQiUZo4y0f1riajRm5shVdU="; patches = [ # https://github.com/grafana/agent/issues/731