nixpkgs/pkgs/applications/science/biology/fastp/default.nix

{ lib
, stdenv
, fetchFromGitHub
, zlib
, libdeflate
, isa-l
}:

stdenv.mkDerivation rec {
  pname = "fastp";
  version = "0.23.2";

  src = fetchFromGitHub {
    owner = "OpenGene";
    repo = "fastp";
    rev = "v${version}";
    sha256 = "sha256-W1mXTfxD7/gHJhao6qqbNcyM3t2cfrUYiBYPJi/O1RI=";
  };

  buildInputs = [ zlib libdeflate isa-l ];

  installPhase = ''
    install -D fastp $out/bin/fastp
  '';

  meta = with lib; {
    description = "Ultra-fast all-in-one FASTQ preprocessor";
    license = licenses.mit;
    homepage = "https://github.com/OpenGene/fastp";
    maintainers = with maintainers; [ jbedo ];
    platforms = platforms.x86_64;
  };
}
fastp: 0.22.0 -> 0.23.1 2021-10-19 08:56:48 +01:00			`{ lib`
			`, stdenv`
fastp: init 0.20.1 2021-01-04 22:57:42 +00:00			`, fetchFromGitHub`
			`, zlib`
fastp: 0.22.0 -> 0.23.1 2021-10-19 08:56:48 +01:00			`, libdeflate`
			`, isa-l`
fastp: init 0.20.1 2021-01-04 22:57:42 +00:00			`}:`

			`stdenv.mkDerivation rec {`
			`pname = "fastp";`
fastp: 0.23.1 -> 0.23.2 2021-12-01 21:03:17 +00:00			`version = "0.23.2";`
fastp: init 0.20.1 2021-01-04 22:57:42 +00:00
			`src = fetchFromGitHub {`
			`owner = "OpenGene";`
			`repo = "fastp";`
			`rev = "v${version}";`
fastp: 0.23.1 -> 0.23.2 2021-12-01 21:03:17 +00:00			`sha256 = "sha256-W1mXTfxD7/gHJhao6qqbNcyM3t2cfrUYiBYPJi/O1RI=";`
fastp: init 0.20.1 2021-01-04 22:57:42 +00:00			`};`

fastp: 0.22.0 -> 0.23.1 2021-10-19 08:56:48 +01:00			`buildInputs = [ zlib libdeflate isa-l ];`
fastp: init 0.20.1 2021-01-04 22:57:42 +00:00
			`installPhase = ''`
			`install -D fastp $out/bin/fastp`
			`'';`

treewide: with stdenv.lib; in meta -> with lib; Part of: https://github.com/NixOS/nixpkgs/issues/108938 meta = with stdenv.lib; is a widely used pattern. We want to slowly remove the `stdenv.lib` indirection and encourage people to use `lib` directly. Thus let’s start with the meta field. This used a rewriting script to mostly automatically replace all occurances of this pattern, and add the `lib` argument to the package header if it doesn’t exist yet. The script in its current form is available at https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix 2021-01-11 07:54:33 +00:00			`meta = with lib; {`
fastp: init 0.20.1 2021-01-04 22:57:42 +00:00			`description = "Ultra-fast all-in-one FASTQ preprocessor";`
			`license = licenses.mit;`
			`homepage = "https://github.com/OpenGene/fastp";`
			`maintainers = with maintainers; [ jbedo ];`
			`platforms = platforms.x86_64;`
			`};`
			`}`