docs: Document the boxes

Add a top-level `README.md` mapping the boxes and per-machine docs under
`docs/boxes/` (grouped `colony/`, `home/`, `misc/`), one file per host, VM and
container documenting role, services and networking with source pointers.

Also point `AGENTS.md` at the new docs.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
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# waffletail
The colony Tailscale node / subnet router.
- **Source:** [`shill/containers/waffletail.nix`](../../../nixos/boxes/colony/vms/shill/containers/waffletail.nix)
- **Host:** NixOS container on `shill`
## Role
- Joins the Tailscale tailnet (auth key from secrets) and **advertises the colony
prefixes** into it, acting as the subnet router so tailnet clients can reach
colony services and vice-versa.
- nftables rules SNAT/forward between `host0` and `tailscale0` for the colony
v4/v6 ranges. `shill` routes the Tailscale prefixes here.
## Networking
- `internal` assignment on the `ctrs` network (alt name `waffletail-ctr`); owns
the `tailscale0` interface.